Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 159 of 316
Found at i:50389855 original size:47 final size:48
Alignment explanation
Indices: 50389794--50389985 Score: 250
Period size: 47 Copynumber: 4.1 Consensus size: 48
50389784 ACACATTTCG
* **
50389794 CATTAGCCATTCGGCCTT-TCCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCCACATATACGCATGTTCACATTCATCA
* * * *
50389841 CATCGGCCCTTCGGCCTTAT-CTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCCACATATACGCATGTTCACATTCATCA
50389888 CATTGGCCATTCGGCCTTATCGCAC--ATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATC-CACATATACGCATGTTCACATTCATCA
* * *
50389935 CATTGGCCATTCGGCTTTAT-CACACATACGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCCACATATACGCATGTTCACATTCATCA
50389982 CATT
1 CATT
50389986 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
45 3 0.02
47 123 0.95
48 1 0.01
49 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (48 bp):
CATTGGCCATTCGGCCTTATCCACATATACGCATGTTCACATTCATCA
Found at i:50394371 original size:46 final size:46
Alignment explanation
Indices: 50394321--50394489 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
50394311 TGAGCATCCA
50394321 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * * * *
50394367 AACTCGTTGAGTTGAGCCCGAGTTC-GTGA--AATG-TAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
50394414 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
50394460 AGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
50394490 GGGGCAGGTT
Statistics
Matches: 98, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 54 0.55
47 27 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:50394473 original size:93 final size:93
Alignment explanation
Indices: 50394314--50394484 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
50394304 GGATGGTTGA
* *
50394314 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50394379 TGAGCCCGAGTTCGTGAAATGTAACTAG
66 TGAGCCCGAGTTCGTGAAATGTAACTAG
* *
50394407 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
50394472 TGAGTCCGAGTTC
66 TGAGCCCGAGTTC
50394485 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAAATGTAACTAG
Found at i:50398042 original size:20 final size:20
Alignment explanation
Indices: 50398012--50398049 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50398002 AACATTATTT
50398012 TCAACTAAATGAATTAAAGAA
1 TCAACTAAATGAA-TAAAGAA
50398033 TCAA-TAAATGAATAAAG
1 TCAACTAAATGAATAAAG
50398050 GGTAATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.58, C:0.08, G:0.11, T:0.24
Consensus pattern (20 bp):
TCAACTAAATGAATAAAGAA
Found at i:50406119 original size:30 final size:31
Alignment explanation
Indices: 50406085--50406181 Score: 85
Period size: 30 Copynumber: 3.2 Consensus size: 31
50406075 TAAACTAAAA
*
50406085 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
1 TGAGCTAAGCTTTAGCTCATGAGCTGAAAGT
* * * * *
50406115 TGAGCTGAGGC-TAAACTCCTAAGCTGAAA-T
1 TGAGCT-AAGCTTTAGCTCATGAGCTGAAAGT
* *
50406145 TGAGCTAAGGTTTAGCTCATGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCATGAGCTGAAAGT
50406175 TGAGCTA
1 TGAGCTA
50406182 GGAATGAGCT
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
29 2 0.04
30 43 0.84
31 6 0.12
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (31 bp):
TGAGCTAAGCTTTAGCTCATGAGCTGAAAGT
Found at i:50412510 original size:11 final size:11
Alignment explanation
Indices: 50412479--50412526 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
50412469 ATATGAATAC
50412479 ATCATGTGCAT
1 ATCATGTGCAT
*
50412490 ATCA--TACAT
1 ATCATGTGCAT
50412499 ATCATGTGCAT
1 ATCATGTGCAT
*
50412510 ATCATGT-CAA
1 ATCATGTGCAT
50412520 ATCATGT
1 ATCATGT
50412527 ACATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:50422090 original size:13 final size:13
Alignment explanation
Indices: 50422072--50422097 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50422062 CTAAGCCACC
50422072 CCACACGGGCGTG
1 CCACACGGGCGTG
50422085 CCACACGGGCGTG
1 CCACACGGGCGTG
50422098 TCCCTGTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.38, T:0.08
Consensus pattern (13 bp):
CCACACGGGCGTG
Found at i:50428691 original size:6 final size:6
Alignment explanation
Indices: 50428672--50428795 Score: 71
Period size: 6 Copynumber: 20.2 Consensus size: 6
50428662 AATCAAACTT
* *
50428672 TTTTTC TATTTTC TTTTTC TTGTTC ATCTTTTC TTTTCTC ATTTTC -TTTTC
1 TTTTTC T-TTTTC TTTTTC TTTTTC -T-TTTTC TTTT-TC TTTTTC TTTTTC
* * *
50428723 TCTCTC TTTTTC -TATTC TTGTGTTC TTTTTC TCATTTT- TCTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TT-T-TTC TTTTTC T--TTTTC T-TTTTC TTTTTC
*
50428774 ATTTTC -TTTTC --TTTC TTTTTC T
1 TTTTTC TTTTTC TTTTTC TTTTTC T
50428796 CTCAATTTAT
Statistics
Matches: 94, Mismatches: 11, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
4 4 0.04
5 14 0.15
6 47 0.50
7 16 0.17
8 13 0.14
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (6 bp):
TTTTTC
Found at i:50428701 original size:15 final size:12
Alignment explanation
Indices: 50428680--50428797 Score: 70
Period size: 13 Copynumber: 9.7 Consensus size: 12
50428670 TTTTTTTCTA
50428680 TTTTCT-TTTTC
1 TTTTCTCTTTTC
50428691 TTGTTCATCTTTTC
1 TT-TTC-TCTTTTC
50428705 TTTTCTCATTTTC
1 TTTTCTC-TTTTC
*
50428718 TTTTCTC-TCTC
1 TTTTCTCTTTTC
*
50428729 TTTT-TCTATTC
1 TTTTCTCTTTTC
50428740 TTGTGT-TCTTTTTC
1 TT-T-TCTC-TTTTC
*
50428754 TCATTTTTCTTTTC
1 T--TTTCTCTTTTC
50428768 TTTT-TCATTTTC
1 TTTTCTC-TTTTC
*
50428780 TTTTCT-TTCT-
1 TTTTCTCTTTTC
50428790 TTTTCTCT
1 TTTTCTCT
50428798 CAATTTATTT
Statistics
Matches: 88, Mismatches: 5, Indels: 28
0.73 0.04 0.23
Matches are distributed among these distances:
10 8 0.09
11 19 0.22
12 18 0.20
13 20 0.23
14 19 0.22
15 3 0.03
16 1 0.01
ACGTcount: A:0.04, C:0.21, G:0.03, T:0.72
Consensus pattern (12 bp):
TTTTCTCTTTTC
Found at i:50428733 original size:17 final size:17
Alignment explanation
Indices: 50428698--50428740 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
50428688 TTCTTGTTCA
*
50428698 TCTTTTCTTTTCTCATTT
1 TCTTTTC-TCTCTCATTT
*
50428716 TCTTTTCTCTCTCTTTT
1 TCTTTTCTCTCTCATTT
*
50428733 TCTATTCT
1 TCTTTTCT
50428741 TGTGTTCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.70
Consensus pattern (17 bp):
TCTTTTCTCTCTCATTT
Found at i:50428751 original size:19 final size:20
Alignment explanation
Indices: 50428727--50428773 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
50428717 CTTTTCTCTC
*
50428727 TCTTTTTCT-ATTCTTGTGT
1 TCTTTTTCTCATTCTTCTGT
* *
50428746 TCTTTTTCTCATTTTTCTTT
1 TCTTTTTCTCATTCTTCTGT
50428766 TCTTTTTC
1 TCTTTTTC
50428774 ATTTTCTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.04, C:0.19, G:0.04, T:0.72
Consensus pattern (20 bp):
TCTTTTTCTCATTCTTCTGT
Found at i:50428768 original size:20 final size:20
Alignment explanation
Indices: 50428727--50428787 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 20
50428717 CTTTTCTCTC
* * *
50428727 TCTTTTTCT-ATTCTTGTGT
1 TCTTTTTCTCATTTTTCTTT
50428746 TCTTTTTCTCATTTTTCTTT
1 TCTTTTTCTCATTTTTCTTT
50428766 TC-TTTT-TCA-TTTTCTTT
1 TCTTTTTCTCATTTTTCTTT
50428783 TCTTT
1 TCTTT
50428788 CTTTTTCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 10 0.27
18 5 0.14
19 13 0.35
20 9 0.24
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (20 bp):
TCTTTTTCTCATTTTTCTTT
Found at i:50432242 original size:39 final size:39
Alignment explanation
Indices: 50432182--50432307 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
50432172 GACTTAATGT
*
50432182 CTAGCAGGCCTCGTGCTGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTTGTGCTGGTGATAAATTCAGGTTTATAC
*
50432221 CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTTGTGCTGGTGATAAATTCAGGTTTATAC
* * * *
50432260 CTAGTAGGCCTTGTGCTGGTGTTAAGTTCGGGTTTATAC
1 CTAGCAGGCCTTGTGCTGGTGATAAATTCAGGTTTATAC
*
50432299 ATAGCAGGC
1 CTAGCAGGC
50432308 AAATTTTCGG
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (39 bp):
CTAGCAGGCCTTGTGCTGGTGATAAATTCAGGTTTATAC
Found at i:50432683 original size:22 final size:22
Alignment explanation
Indices: 50432661--50432714 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 22
50432651 GGTTATGTAT
50432661 TTTCGGTCAAT-TGGTATTATA
1 TTTCGGTCAATATGGTATTATA
50432682 TTTC-G--AATATGGTATTATA
1 TTTCGGTCAATATGGTATTATA
50432701 TTTCGGTCAA-ATGG
1 TTTCGGTCAATATGG
50432715 CTAGTCTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
18 3 0.10
19 14 0.48
20 2 0.07
21 8 0.28
22 2 0.07
ACGTcount: A:0.26, C:0.09, G:0.20, T:0.44
Consensus pattern (22 bp):
TTTCGGTCAATATGGTATTATA
Found at i:50439023 original size:34 final size:34
Alignment explanation
Indices: 50438985--50439056 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
50438975 GTAACAGTCT
50438985 AGTATCAGT-TACGGCCTTAGCCCATTACAGTAAC
1 AGTATCAGTGT-CGGCCTTAGCCCATTACAGTAAC
* * *
50439019 AGTATCAGTGTGGGCCTTAGCCCATTTCAGTAAT
1 AGTATCAGTGTCGGCCTTAGCCCATTACAGTAAC
50439053 AGTA
1 AGTA
50439057 AAAGGAAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (34 bp):
AGTATCAGTGTCGGCCTTAGCCCATTACAGTAAC
Found at i:50449000 original size:39 final size:39
Alignment explanation
Indices: 50448886--50449186 Score: 403
Period size: 39 Copynumber: 7.6 Consensus size: 39
50448876 GCTCCTCGTT
* * *
50448886 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
50448926 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
50448966 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
50449005 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
50449044 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
50449083 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * *
50449122 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGTAAC-TCGCA
50449163 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
50449187 CATCATTCAA
Statistics
Matches: 243, Mismatches: 13, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
39 170 0.70
40 63 0.26
41 10 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:50464401 original size:40 final size:40
Alignment explanation
Indices: 50464357--50464456 Score: 137
Period size: 40 Copynumber: 2.5 Consensus size: 40
50464347 ATATCATATA
* * **
50464357 TATATATGACACTTAGTGTGCGATTCAAGAAAGCTTCGGT
1 TATATATGGCACTTAGTGTGCAATTCAAGAAAGCTTCGAC
* * *
50464397 TATATACGGCACTTATTGTGCAATTCAAGAAAGTTTCGAC
1 TATATATGGCACTTAGTGTGCAATTCAAGAAAGCTTCGAC
50464437 TATATATGGCACTTAGTGTG
1 TATATATGGCACTTAGTGTG
50464457 TAACACCCCT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGCAATTCAAGAAAGCTTCGAC
Found at i:50468194 original size:48 final size:48
Alignment explanation
Indices: 50468136--50468268 Score: 194
Period size: 48 Copynumber: 2.8 Consensus size: 48
50468126 CTCTTGTCAG
* *
50468136 TGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATAAA
** * * *
50468184 TGCCGGTGCCATGTCCCAGACATGGTCTTACAATGGCACACATGTAAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATAAA
*
50468232 TGCCAATGCCATGTCTCAGACATGGTCTTACACTAGC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGC
50468269 TCTCATTAAT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATAAA
Found at i:50469935 original size:42 final size:42
Alignment explanation
Indices: 50469824--50469935 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
50469814 TACCATACCA
* * * *
50469824 ATGCCATATCCTAGATATGGTCTTAAATGAAATCTCGTATCG
1 ATGCCATATCCCAGATATGGCCTTACATGAAATCTCATATCG
* * *
50469866 ATGCCAATAGCCCAGTTAT-GCTCTTACATGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGC-CTTACATGAAATCTCATATCG
50469909 ATGCCATATCCCAGATATGGCCTTACA
1 ATGCCATATCCCAGATATGGCCTTACA
50469936 CATAATCTCG
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 23 0.40
43 35 0.60
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGCCTTACATGAAATCTCATATCG
Found at i:50472645 original size:21 final size:21
Alignment explanation
Indices: 50472618--50472678 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
50472608 TATAATGAGT
50472618 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
50472639 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
50472660 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
50472679 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:50472677 original size:10 final size:10
Alignment explanation
Indices: 50472618--50472678 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
50472608 TATAATGAGT
50472618 ATATCATAG-C
1 ATATCAT-GTC
50472628 ATATCATGTGC
1 ATATCATGT-C
* **
50472639 ATCTCATAAC
1 ATATCATGTC
50472649 ATATCATGTGC
1 ATATCATGT-C
50472660 ATATCATGTC
1 ATATCATGTC
50472670 ATATCATGT
1 ATATCATGT
50472679 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:50478232 original size:46 final size:46
Alignment explanation
Indices: 50478090--50478232 Score: 118
Period size: 46 Copynumber: 3.1 Consensus size: 46
50478080 CCCGCCCATA
* *
50478090 AGTGAACTCGGACTCAACTCAACGAGCTCGG-TGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
50478138 CA---AACTCGGACTCAAGTCAACGAGTTCGGACATTCGCATCCAT--A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
50478182 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
50478228 AGTGA
1 AGTGA
50478233 CATGTCACTT
Statistics
Matches: 73, Mismatches: 13, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
43 1 0.01
44 8 0.11
46 56 0.77
47 4 0.05
49 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:50480645 original size:30 final size:30
Alignment explanation
Indices: 50480610--50480688 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
50480600 AAGAAAACGA
*
50480610 AATAAAGAAATCCAAGATAGAGAAACCCAG
1 AATAAAGAAATCCAAGATAAAGAAACCCAG
* *
50480640 AATAAAGAAATCC-AGAATAAAGAGATCCAG
1 AATAAAGAAATCCAAG-ATAAAGAAACCCAG
* *
50480670 GATAAAGAAACCCAAGATA
1 AATAAAGAAATCCAAGATA
50480689 CGATACTATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 2 0.05
30 38 0.90
31 2 0.05
ACGTcount: A:0.57, C:0.15, G:0.16, T:0.11
Consensus pattern (30 bp):
AATAAAGAAATCCAAGATAAAGAAACCCAG
Found at i:50480648 original size:15 final size:15
Alignment explanation
Indices: 50480610--50480679 Score: 88
Period size: 15 Copynumber: 4.7 Consensus size: 15
50480600 AAGAAAACGA
50480610 AATAAAGAAATCCA-
1 AATAAAGAAATCCAG
* *
50480624 AGATAGAGAAACCCAG
1 A-ATAAAGAAATCCAG
50480640 AATAAAGAAATCCAG
1 AATAAAGAAATCCAG
*
50480655 AATAAAGAGATCCAG
1 AATAAAGAAATCCAG
*
50480670 GATAAAGAAA
1 AATAAAGAAA
50480680 CCCAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.59, C:0.13, G:0.17, T:0.11
Consensus pattern (15 bp):
AATAAAGAAATCCAG
Found at i:50480688 original size:15 final size:15
Alignment explanation
Indices: 50480611--50480688 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
50480601 AGAAAACGAA
50480611 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
50480626 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
50480640 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
50480655 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
50480671 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
50480686 ATA
1 ATA
50480689 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:50483790 original size:46 final size:46
Alignment explanation
Indices: 50483624--50483799 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
50483614 TGTAACTCGC
* * *
50483624 CCATAAGTGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
50483670 CAATAAGTGAACTCGAACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
50483716 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
50483763 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
50483800 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:50483791 original size:93 final size:93
Alignment explanation
Indices: 50483632--50483803 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
50483622 GCCCATAAGT
* * *
50483632 GAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCATCAATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGAACTCAACTCAA
50483697 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
50483725 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGAACTCAACTCAA
*
50483790 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
50483804 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50487453 original size:28 final size:28
Alignment explanation
Indices: 50487390--50487487 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
50487380 ATATTAAGTC
*
50487390 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50487417 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50487445 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50487474 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50487488 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50495567 original size:29 final size:27
Alignment explanation
Indices: 50495549--50495618 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
50495539 ATATTAAGTC
50495549 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
50495576 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
50495604 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
50495619 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:50495612 original size:28 final size:28
Alignment explanation
Indices: 50495549--50495646 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
50495539 ATATTAAGTC
*
50495549 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50495576 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50495604 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50495633 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50495647 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50500588 original size:21 final size:21
Alignment explanation
Indices: 50500561--50500622 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
50500551 TATAATGAGT
50500561 ATATCATAGCATATCATGTAC
1 ATATCATAGCATATCATGTAC
* * *
50500582 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTAC
50500603 ATATCAT-GTCATATCATGTA
1 ATATCATAG-CATATCATGTA
50500623 TAACAATATC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATCATAGCATATCATGTAC
Found at i:50500621 original size:10 final size:10
Alignment explanation
Indices: 50500561--50500621 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
50500551 TATAATGAGT
50500561 ATATCATAG-C
1 ATATCAT-GTC
50500571 ATATCATGTAC
1 ATATCATGT-C
* **
50500582 ATCTCATAAC
1 ATATCATGTC
50500592 ATATCATGTGC
1 ATATCATGT-C
50500603 ATATCATGTC
1 ATATCATGTC
50500613 ATATCATGT
1 ATATCATGT
50500622 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:50503306 original size:12 final size:12
Alignment explanation
Indices: 50503289--50503314 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50503279 GGTTTGGCAT
50503289 GGCCTAGCACAC
1 GGCCTAGCACAC
50503301 GGCCTAGCACAC
1 GGCCTAGCACAC
50503313 GG
1 GG
50503315 GCGTGGGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:50506428 original size:40 final size:39
Alignment explanation
Indices: 50506384--50506606 Score: 218
Period size: 40 Copynumber: 5.5 Consensus size: 39
50506374 AAGTCGGATA
50506384 TATATATGGCACTTAGTGTGCGATTCAAGAAAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGATTCAA-AAAGCTTCGGC
* *
50506424 TATATACGGCACTTAGTGTGCGATTCAAGAAAGCCTCGG-
1 TATATATGGCACTTAGTGTGCGATTCAA-AAAGCTTCGGC
* *
50506463 TGATATATGAG-ACTTAGTGTGTGATTCAAAATAGCTTTGGC
1 T-ATATATG-GCACTTAGTGTGCGATTCAAAA-AGCTTCGGC
** *
50506504 TATATATGGCACTTAGTGTGCGAGACCAAAATAGCTTCGAC
1 TATATATGGCACTTAGTGTGCGA-TTCAAAA-AGCTTCGGC
* * * *
50506545 TATGTAAGGCACTTAGTGTGCAGAATT-ATAATAGTTTCGGC
1 TATATATGGCACTTAGTGTGC-G-ATTCA-AAAAGCTTCGGC
*
50506586 TATGTATTGGCACTTAGTGTG
1 TATATA-TGGCACTTAGTGTG
50506607 TGAGATATCG
Statistics
Matches: 154, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
39 4 0.03
40 85 0.55
41 48 0.31
42 16 0.10
43 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (39 bp):
TATATATGGCACTTAGTGTGCGATTCAAAAAGCTTCGGC
Found at i:50520124 original size:48 final size:48
Alignment explanation
Indices: 50520058--50520344 Score: 240
Period size: 48 Copynumber: 5.9 Consensus size: 48
50520048 ATACTAGGGT
* * * * * *
50520058 TATGTGAGCCAGTGTAAGACCATATTTGGAAAATGGCAACGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
* * * * *
50520106 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGACA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT--ATA
* * *
50520156 TAT-A-AGCTAGTGTAATG-CCATGTTTGGAACATAGCATCGGTATTTA
1 TATGAGAGCTAGTGTAA-GACCATGTTTGGAACATGGCATCGGCATATA
* * * * * * * **
50520202 TATGAAAGCTAGTGTACGACCATGTCTGGCACATGGTATCAGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
* * *
50520250 CATGCGAGCTAGTGTAAGACCATGTTAGGAACATGGCATCGGCACTGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCA-T-ATA
* *
50520300 TATGAGAGCTAGTGTAAGAACATGTCTAGG-ACATGGCATCGGCAT
1 TATGAGAGCTAGTGTAAGACCATGT-TTGGAACATGGCATCGGCAT
50520345 CTTACCTTTT
Statistics
Matches: 186, Mismatches: 44, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
46 4 0.02
47 2 0.01
48 131 0.70
49 4 0.02
50 41 0.22
51 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
Found at i:50520236 original size:96 final size:95
Alignment explanation
Indices: 50520068--50520339 Score: 339
Period size: 96 Copynumber: 2.8 Consensus size: 95
50520058 TATGTGAGCC
* * *
50520068 AGTGTAAGACCATATTTGGAAAATGGCAACGGCATTTATATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCATGTCT
** *
50520133 GGGACATGGCATTGGCCTCGACATATAAGCT
66 -GGACATGGCATCAGCCTCGACATACAAGCT
* * * *
50520164 AGTGTAATG-CCATGTTTGGAACATAGCATCGGTATTTATATGAAAGCTAGTGTACGACCATGTC
1 AGTGTAA-GACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCATGTC
* * *
50520228 TGGCACATGGTATCAGCCTCGACATGCGAGCT
65 TGG-ACATGGCATCAGCCTCGACATACAAGCT
* * *
50520260 AGTGTAAGACCATGTTAGGAACATGGCATCGGCACTGATATATGAGAGCTAGTGTAAGAACATGT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCA-T-TTATATGAGAGCTAGTGTAAGACCATGT
50520325 CTAGGACATGGCATC
64 CT-GGACATGGCATC
50520340 GGCATCTTAC
Statistics
Matches: 149, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
95 3 0.02
96 107 0.72
97 2 0.01
98 35 0.23
99 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (95 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCATGTCT
GGACATGGCATCAGCCTCGACATACAAGCT
Found at i:50524232 original size:13 final size:13
Alignment explanation
Indices: 50524214--50524262 Score: 89
Period size: 13 Copynumber: 3.8 Consensus size: 13
50524204 TGGCTGAAAA
50524214 TATTGAATTGAAG
1 TATTGAATTGAAG
*
50524227 TATTGAATTGAAC
1 TATTGAATTGAAG
50524240 TATTGAATTGAAG
1 TATTGAATTGAAG
50524253 TATTGAATTG
1 TATTGAATTG
50524263 CTTGTTTAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.37, C:0.02, G:0.20, T:0.41
Consensus pattern (13 bp):
TATTGAATTGAAG
Found at i:50524510 original size:20 final size:23
Alignment explanation
Indices: 50524475--50524515 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
50524465 TTTCGTAAGC
50524475 TCGTATATGATTG-TTTAATACG
1 TCGTATATGATTGTTTTAATACG
50524497 TCGTA-ATG-TTGTTTTAATA
1 TCGTATATGATTGTTTTAATA
50524516 ATAATGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.17
21 10 0.56
22 5 0.28
ACGTcount: A:0.27, C:0.07, G:0.17, T:0.49
Consensus pattern (23 bp):
TCGTATATGATTGTTTTAATACG
Found at i:50527191 original size:13 final size:13
Alignment explanation
Indices: 50527173--50527199 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50527163 TATTGTGAAC
50527173 GATGCTACATATT
1 GATGCTACATATT
50527186 GATGCTACATATT
1 GATGCTACATATT
50527199 G
1 G
50527200 TAGAAGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (13 bp):
GATGCTACATATT
Found at i:50528199 original size:26 final size:26
Alignment explanation
Indices: 50528160--50528267 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
50528150 TGGTACAAAT
50528160 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
50528186 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
50528212 TGATAATGGGTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
50528238 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
50528264 TGAT
1 TGAT
50528268 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:50529425 original size:16 final size:15
Alignment explanation
Indices: 50529399--50529428 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
50529389 ACTAGATTGG
50529399 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
50529414 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
50529429 TCGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:50529926 original size:54 final size:54
Alignment explanation
Indices: 50529844--50529974 Score: 228
Period size: 54 Copynumber: 2.4 Consensus size: 54
50529834 AGGAAGCGTC
*
50529844 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
50529898 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
50529952 CTGGTGGCTCTGCCACAA-TATCT
1 CTGGTGGCTATGCCACAATTATCT
50529975 ATATCTAGTA
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 5 0.07
54 68 0.93
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:50529980 original size:32 final size:27
Alignment explanation
Indices: 50529844--50529974 Score: 178
Period size: 27 Copynumber: 4.9 Consensus size: 27
50529834 AGGAAGCGTC
* *
50529844 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
*
50529871 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
* *
50529898 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGTT
50529925 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
50529952 CTGGTGGCTCTGCCACA-ATATCT
1 CTGGTGGCTCTGCCACATATATCT
50529975 ATATCTAGTA
Statistics
Matches: 95, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
26 8 0.08
27 84 0.88
28 3 0.03
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:50535293 original size:26 final size:26
Alignment explanation
Indices: 50535264--50535371 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
50535254 TGGTACAAAT
50535264 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
50535290 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
50535316 TGATAATGGGTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
50535342 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
50535368 TGAT
1 TGAT
50535372 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:50536853 original size:28 final size:26
Alignment explanation
Indices: 50536811--50536885 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
50536801 AAAAGCAGCT
* * *
50536811 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
50536839 AAATTACTGTTATACTCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
50536865 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
50536886 GGTTAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.55
27 1 0.03
28 17 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:50537039 original size:27 final size:27
Alignment explanation
Indices: 50536993--50537211 Score: 259
Period size: 27 Copynumber: 8.1 Consensus size: 27
50536983 AAGCGTCCTT
50536993 GTGGCTATGCCACA-ATTATCTGATCTG
1 GTGGCTATGCCACATA-TATCTGATCTG
* *
50537020 GTGGCTCTGCCGCATATATCT-ATTCTG
1 GTGGCTATGCCACATATATCTGA-TCTG
**
50537047 GTGGCTATGCCACATATATCTTTTCTG
1 GTGGCTATGCCACATATATCTGATCTG
50537074 GTGGCTATGCCACA-ATTATCTGATCTG
1 GTGGCTATGCCACATA-TATCTGATCTG
* * *
50537101 GTGGTTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACATATATCTGATCTG
50537128 GTGGCTATGCCACGAT-TATCTGATCTG
1 GTGGCTATGCCAC-ATATATCTGATCTG
* * *
50537155 GTGGCTCTGCCACACATATCTGTTCTG
1 GTGGCTATGCCACATATATCTGATCTG
*
50537182 GTGGCGATGCCACA-ATTATCTGATCTG
1 GTGGCTATGCCACATA-TATCTGATCTG
50537209 GTG
1 GTG
50537212 ACTTCGTCAC
Statistics
Matches: 165, Mismatches: 19, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
26 4 0.02
27 157 0.95
28 4 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
GTGGCTATGCCACATATATCTGATCTG
Found at i:50537128 original size:81 final size:81
Alignment explanation
Indices: 50536993--50537211 Score: 300
Period size: 81 Copynumber: 2.7 Consensus size: 81
50536983 AAGCGTCCTT
* *
50536993 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCGCATATATCTATTCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCC
**
50537058 AC-ATATATCTTTTCTG
66 ACGAT-TATCTGATCTG
*
50537074 GTGGCTATGCCACAATTATCTGATCTGGTGGTTCTGCCACATATATCTGTTCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCC
50537139 ACGATTATCTGATCTG
66 ACGATTATCTGATCTG
* * ** *
50537155 GTGGCTCTGCCACACA-TATCTGTTCTGGTGGCGATGCCACA-ATTATCTGATCTGGTG
1 GTGGCTATGCCACA-ATTATCTGATCTGGTGGCTCTGCCACATA-TATCTGTTCTGGTG
50537212 ACTTCGTCAC
Statistics
Matches: 124, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
80 1 0.01
81 120 0.97
82 3 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (81 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCC
ACGATTATCTGATCTG
Found at i:50558688 original size:47 final size:47
Alignment explanation
Indices: 50558628--50558749 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
50558618 GCATTGGCAC
*
50558628 TAAGACAAGGATACCATGTAAGACTATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* * *
50558675 TAAGACAAAGATACCATGTAAAACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* * *
50558722 TAAGATAAGGATATCACGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
50558750 CCAAGGCATG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:50558797 original size:54 final size:54
Alignment explanation
Indices: 50558736--50558911 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
50558726 ATAAGGATAT
* *
50558736 CACGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAAT
1 CACGTAAGACCATGCCAAGGCATGACATTGATGAGTTCTATAAGGCAAGGAAAC
* * * * **
50558790 CATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGAAAAGG-TCC
1 CACGTAAGACCATGCCAAGGCATGACATTGATGAGTT-CTATAAGG-CAAGGAAAC
* * * *
50558845 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGCAA-GAATAC
1 CACGTAAGACCATGCCAAGGCATGACATTGATGAGTTCTATAAGGCAAGGAA-AC
50558898 CACGTAAGACCATG
1 CACGTAAGACCATG
50558912 TAAAGACATG
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
51 1 0.01
52 2 0.02
53 19 0.19
54 34 0.34
55 41 0.41
56 4 0.04
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (54 bp):
CACGTAAGACCATGCCAAGGCATGACATTGATGAGTTCTATAAGGCAAGGAAAC
Found at i:50558922 original size:53 final size:53
Alignment explanation
Indices: 50558736--50558941 Score: 166
Period size: 54 Copynumber: 3.8 Consensus size: 53
50558726 ATAAGGATAT
* * *
50558736 CACGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAA-AT
1 CACGTAAGACCATGCCAAGACATGACATTGATAAGTTC-ATAAAGCAA-GAATAC
* * * * *
50558790 CATGTAAGACCATGTCAAGACATGACATTGATGAGTT-ACTATAAGGAA-AAGGTCC
1 CACGTAAGACCATGCCAAGACATGACATTGATAAGTTCA-TA-AAGCAAGAA--TAC
* * * * *
50558845 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGCAAGAATAC
1 CACGTAAGACCATGCCAAGACATGACATTGATAAGTTCATAAAGCAAGAATAC
** * * * *
50558898 CACGTAAGACCATGTAAAGACATGGCAATGGTAAGTTCAAAAAG
1 CACGTAAGACCATGCCAAGACATGACATTGATAAGTTCATAAAG
50558942 GAAAAGGTTC
Statistics
Matches: 124, Mismatches: 21, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
52 3 0.02
53 41 0.33
54 42 0.34
55 37 0.30
56 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (53 bp):
CACGTAAGACCATGCCAAGACATGACATTGATAAGTTCATAAAGCAAGAATAC
Found at i:50564594 original size:43 final size:41
Alignment explanation
Indices: 50564539--50564651 Score: 120
Period size: 43 Copynumber: 2.7 Consensus size: 41
50564529 TACACGGCTA
* *
50564539 ACCACATGCCTGTGTGTCTAGCCTGTGTACCCTTCGACATGGCC
1 ACCACACGCCTGTGTGTCTAGGCTGTGT-CCC-TC-ACATGGCC
* * *
50564583 A-CACACGCCTGTGTGCCAAGGCTGTGTGCCTCACATGGCC
1 ACCACACGCCTGTGTGTCTAGGCTGTGTCCCTCACATGGCC
*
50564623 ACCAGACACGCCCGTGTGTCTAGGCTGTG
1 ACC--ACACGCCTGTGTGTCTAGGCTGTG
50564652 CTTGAGACTA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
40 9 0.16
41 3 0.05
42 2 0.03
43 43 0.74
44 1 0.02
ACGTcount: A:0.17, C:0.34, G:0.27, T:0.23
Consensus pattern (41 bp):
ACCACACGCCTGTGTGTCTAGGCTGTGTCCCTCACATGGCC
Found at i:50573088 original size:43 final size:43
Alignment explanation
Indices: 50573019--50573180 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
50573009 AATGGCAACA
* * * * *
50573019 TCCCAGAC-GTGGTCATACATGTAATCAAATATCTATACCACTG
1 TCCCAGACAGTGGTCTTACACGAAATCAAATATCGATGCCA-TG
*
50573062 TCCCAGACAG-GGTCTTACACGAAATCAAATA-CGATGCTGATG
1 TCCCAGACAGTGGTCTTACACGAAATCAAATATCGATGC-CATG
* *
50573104 TCCTAGACA-TGGTCTTACACGTAAATCTCAA-ATCGATGCCAATG
1 TCCCAGACAGTGGTCTTACACG-AAATC-AAATATCGATGCC-ATG
* * *
50573148 TCCCAGA-TGTGGTCTTGCACGAAATCACATATC
1 TCCCAGACAGTGGTCTTACACGAAATCAAATATC
50573181 AGAATCCTAT
Statistics
Matches: 96, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 26 0.27
43 41 0.43
44 29 0.30
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
TCCCAGACAGTGGTCTTACACGAAATCAAATATCGATGCCATG
Found at i:50573161 original size:44 final size:44
Alignment explanation
Indices: 50573060--50573173 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 44
50573050 TCTATACCAC
* **
50573060 TGTCCCAGACAGGGTCTTACACGAAA--TCAAATACGATGCTGA
1 TGTCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAA
*
50573102 TGTCCTAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAA
1 TGTCCCAGACATGGTCTTACACG-AAATCTCAAATACGATGCCAA
** *
50573146 TGTCCCAGATGTGGTCTTGCACGAAATC
1 TGTCCCAGACATGGTCTTACACGAAATC
50573174 ACATATCAGA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 21 0.34
43 8 0.13
44 26 0.43
45 6 0.10
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (44 bp):
TGTCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAA
Found at i:50579559 original size:34 final size:34
Alignment explanation
Indices: 50579514--50579624 Score: 125
Period size: 34 Copynumber: 3.3 Consensus size: 34
50579504 GAAGTACATA
50579514 AATATATATGTATGGCTTGGCATAATCG-AAGATG
1 AATATATATGTATGGCTTGGCATAATCGAAAG-TG
* * * *
50579548 ATTATAAATGTATAGCTTGGTATAATCGAAAGTG
1 AATATATATGTATGGCTTGGCATAATCGAAAGTG
* ** * *
50579582 AATATATATGTATGGTTTGATATAACCGAAGGTG
1 AATATATATGTATGGCTTGGCATAATCGAAAGTG
50579616 AATATATAT
1 AATATATAT
50579625 ATACATTTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
34 62 0.95
35 3 0.05
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (34 bp):
AATATATATGTATGGCTTGGCATAATCGAAAGTG
Found at i:50581471 original size:57 final size:57
Alignment explanation
Indices: 50581354--50581490 Score: 145
Period size: 57 Copynumber: 2.4 Consensus size: 57
50581344 TAGACAACAA
* *
50581354 GATTACCAGTCCAGGCTAAATCCTGTCTACAATATATACTCAATTGAGCTTAGTTAG
1 GATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTAGTTAG
* * * **
50581411 GATTACCAGTCCAAGCTAAATCCTTTTTATGACATATACTCTAA-AGAGCTT-GATCT-G
1 GATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTC-AATAGAGCTTAG-T-TAG
* *
50581468 GATTACCCGTCCGGGCTAAATCC
1 GATTACCAGTCCAGGCTAAATCC
50581491 AATCCATAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
56 1 0.01
57 63 0.94
58 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (57 bp):
GATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTAGTTAG
Found at i:50585168 original size:42 final size:43
Alignment explanation
Indices: 50585122--50585239 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 43
50585112 TGTGATATCG
*
50585122 TGTAAGACCATGTCTGGGACATTGGCATCGTAT-CTGATTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATGCTGATTACA
* * * * *
50585164 TGTAAGACCCTGTCTGGGAAAGTGGCATC-AATGGTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGTAT-GCTGATTACA
* * *
50585207 TGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 TGTAAGACCATGTCTGGGACATTGGCATCGTAT
50585240 ATGCTTTCTG
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
41 2 0.03
42 26 0.43
43 30 0.50
44 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATGCTGATTACA
Found at i:50585215 original size:43 final size:42
Alignment explanation
Indices: 50585122--50585225 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
50585112 TGTGATATCG
* * * * *
50585122 TGTAAGACCATGTCTGGGACATTGGCATCGTATCTGATTTCA
1 TGTAAGACCCTGTCTGGGAAAGTGGCATCGAATCTGATTACA
*
50585164 TGTAAGACCCTGTCTGGGAAAGTGGCATC-AATGGTTGATTACA
1 TGTAAGACCCTGTCTGGGAAAGTGGCATCGAAT--CTGATTACA
50585207 TGTAAGACCAC-GTCTGGGA
1 TGTAAGACC-CTGTCTGGGA
50585226 CGTTGGCATT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
41 2 0.04
42 26 0.49
43 24 0.45
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGAAAGTGGCATCGAATCTGATTACA
Found at i:50591393 original size:27 final size:27
Alignment explanation
Indices: 50591363--50591540 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50591353 ATATTGAGTC
* * * *
50591363 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50591390 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50591417 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50591445 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50591472 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50591499 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50591526 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50591541 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50591502 original size:82 final size:81
Alignment explanation
Indices: 50591384--50591539 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50591374 TGCTATATAA
* *
50591384 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50591449 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50591466 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50591530 CACTTAGTGC
65 CACTTAGTGC
50591540 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50604450 original size:40 final size:40
Alignment explanation
Indices: 50604352--50604614 Score: 246
Period size: 40 Copynumber: 6.6 Consensus size: 40
50604342 TCCTCGTTCA
* * * * *
50604352 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
50604391 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
50604431 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
50604471 AATGCCTTCGGGATTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
50604511 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCCCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
50604551 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
50604591 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50604615 CAGCATTCAA
Statistics
Matches: 191, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
39 39 0.20
40 141 0.74
41 11 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:50604497 original size:80 final size:79
Alignment explanation
Indices: 50604317--50604614 Score: 273
Period size: 80 Copynumber: 3.8 Consensus size: 79
50604307 AAATCACGTA
* ** ** * * *
50604317 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTTTAG
1 CCTTCGGGATTTAACCCGGATTTAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAG
*
50604381 TAACTCACACAATG
66 TAACTCGCACAATG
** * * *
50604395 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAA
1 CCTTCGGGATTTAACCCGGATTTAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAG
50604460 TAACTCGCACGAATG
66 TAACTCGCAC-AATG
* * * *
50604475 CCTTCGGGATTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT-
1 CCTTCGGGATTTAACCCGGATTTAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGG-ATTTA
* *
50604539 GTATCCCGCACAAATG
65 GTAACTCGCAC-AATG
** * * * *
50604555 CCTTC-GGATCTTAGTCCGGATATATTC-ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGAT-TTAACCCGGATTTA-GCAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
50604615 CAGCATTCAA
Statistics
Matches: 179, Mismatches: 35, Indels: 11
0.80 0.16 0.05
Matches are distributed among these distances:
78 12 0.07
79 53 0.30
80 102 0.57
81 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGGATTTAACCCGGATTTAGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAG
TAACTCGCACAATG
Found at i:50604623 original size:41 final size:41
Alignment explanation
Indices: 50604546--50604623 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50604536 TTTGTATCCC
* * *
50604546 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50604587 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50604624 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50606296 original size:205 final size:204
Alignment explanation
Indices: 50605939--50606345 Score: 679
Period size: 205 Copynumber: 2.0 Consensus size: 204
50605929 GGTTCTCACA
* *
50605939 CATTGACCTATCACATTTTAGAATTTTCTCACATAAGTCCTATTGACTAAATTTACATGAAATCA
1 CATTGACCTATCACATTTTAAAATTTTCTCACATAAGTCCTATTGACTAAATTCACATGAAATCA
* **
50606004 ACCAAATTGAAGCTTGAAATTTCACACATTCATAATTACATATTCTAGACAATAAGTATCACATT
66 ACCAAATCGAAGCTTGAAATTTCACACATTCATAATTACATATTCTAGACAATAAACATCACATT
* *
50606069 CAAACATTTCGGTGACTCGGTTTAGCGGTCCCGAAACTACTTCCCGACTAGGGTCAACTTTGGGC
131 CAAACATTTCGGTGACTCGGTTTAGCGGTCCCGAAACCACTCCCCGACTAGGGTCAACTTTGGGC
50606134 TGTCACATG
196 TGTCACATG
* * *
50606143 CATTGACCTATCACATTTTAAAATTTTCTCATATAAGTCCTATTGACTAAATTCACATGCAATCG
1 CATTGACCTATCACATTTTAAAATTTTCTCACATAAGTCCTATTGACTAAATTCACATGAAATCA
* *
50606208 ACTAAATCGAAGCTTGAAATTTTCACACATTCATGATTACATATTCTAGACAATAAACATCACAT
66 ACCAAATCGAAGCTTGAAA-TTTCACACATTCATAATTACATATTCTAGACAATAAACATCACAT
* *
50606273 TCAAACCTTTCGGTGACTCGGTTTAGCGGTCCCGAAACCACTCCCCGACTAGGGTCAATTTTGGG
130 TCAAACATTTCGGTGACTCGGTTTAGCGGTCCCGAAACCACTCCCCGACTAGGGTCAACTTTGGG
50606338 CTGTCACA
195 CTGTCACA
50606346 ATACGGGTAT
Statistics
Matches: 188, Mismatches: 14, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
204 77 0.41
205 111 0.59
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (204 bp):
CATTGACCTATCACATTTTAAAATTTTCTCACATAAGTCCTATTGACTAAATTCACATGAAATCA
ACCAAATCGAAGCTTGAAATTTCACACATTCATAATTACATATTCTAGACAATAAACATCACATT
CAAACATTTCGGTGACTCGGTTTAGCGGTCCCGAAACCACTCCCCGACTAGGGTCAACTTTGGGC
TGTCACATG
Found at i:50606592 original size:18 final size:18
Alignment explanation
Indices: 50606566--50606606 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
50606556 GATATTGCGG
50606566 GCCCATGTGGGCCCACAT-
1 GCCCATGT-GGCCCACATA
*
50606584 GCCCGTGTGGCCCACATA
1 GCCCATGTGGCCCACATA
50606602 GCCCA
1 GCCCA
50606607 GAGATGGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.17, C:0.41, G:0.27, T:0.15
Consensus pattern (18 bp):
GCCCATGTGGCCCACATA
Found at i:50609292 original size:18 final size:17
Alignment explanation
Indices: 50609262--50609296 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
50609252 TATACGTGTG
*
50609262 GGGCCTACAAGCCCATT
1 GGGCCCACAAGCCCATT
50609279 GGGCCCACATAGCCCATT
1 GGGCCCACA-AGCCCATT
50609297 TCGGCCCATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.23, C:0.37, G:0.23, T:0.17
Consensus pattern (17 bp):
GGGCCCACAAGCCCATT
Found at i:50624501 original size:27 final size:27
Alignment explanation
Indices: 50624430--50624503 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
50624420 GTCCCGGTCG
* *
50624430 ACTATCCTGTGTTTAATATCCCAATAT
1 ACTATCCTGTGTTTAATGTCCCAATAA
50624457 ACTAT-CTCGTGTTTAATGTCCC-ATCAA
1 ACTATCCT-GTGTTTAATGTCCCAAT-AA
*
50624484 ACTATCCTGTATTTAATGTC
1 ACTATCCTGTGTTTAATGTC
50624504 TCGTCAGACT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
26 4 0.10
27 35 0.85
28 2 0.05
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
ACTATCCTGTGTTTAATGTCCCAATAA
Found at i:50626347 original size:39 final size:40
Alignment explanation
Indices: 50626178--50626402 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
50626168 GCTCCTCGTT
* * *
50626178 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
50626218 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
50626258 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * * *
50626298 CCAATGCCTTCGGG-TTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
50626337 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
50626378 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50626403 CATCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.01
39 29 0.18
40 114 0.72
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50634258 original size:40 final size:40
Alignment explanation
Indices: 50634214--50634431 Score: 210
Period size: 40 Copynumber: 5.5 Consensus size: 40
50634204 GCTCCTCGTT
* * *
50634214 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
50634254 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
50634294 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * *
50634334 CCAATGCCTTCGGG-CTTAGCCCAAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
50634373 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
50634414 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
50634432 GCCCAGACAT
Statistics
Matches: 146, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
38 2 0.01
39 29 0.20
40 102 0.70
41 13 0.09
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50637252 original size:22 final size:21
Alignment explanation
Indices: 50637214--50637254 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
50637204 CTTGACACAA
50637214 GGGCACACGCCCATGTGAGAG
1 GGGCACACGCCCATGTGAGAG
* *
50637235 GGGCAACATGCCCGTGTGAG
1 GGGC-ACACGCCCATGTGAG
50637255 CATTCCAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (21 bp):
GGGCACACGCCCATGTGAGAG
Found at i:50644869 original size:50 final size:50
Alignment explanation
Indices: 50644804--50645141 Score: 268
Period size: 50 Copynumber: 6.7 Consensus size: 50
50644794 GAAGCTCTTA
* * *
50644804 GGTACGCATATTAGCCTGCACTGT-GTACTACACATGCGACCTAACAATCT
1 GGTACACATAGTAGCCTGCACT-TAGTACTACACACGCGACCTAACAATCT
* * * * * *
50644854 GGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACTTAACCATTT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCT
* * * ** * * * *
50644904 GATACACATAGTAGCCTGCACTTAGTAATACACTCATGATCGAAGCTATCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAATCT
** ** * * *
50644955 GGTACGTATAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTATC-
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAATCT
* ** * *
50645005 GGATACGCATAGTAGCCTGCACTTAGTACTGTACATGCGACCTAACAATTT
1 GG-TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCT
* *
50645056 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-AACCGTCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA---TCT
*** *
50645108 TAAACACATAGTAGCCTGCACATAGTACTACACA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACA
50645142 TGTGTTCTCA
Statistics
Matches: 233, Mismatches: 48, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
49 3 0.01
50 115 0.49
51 84 0.36
52 31 0.13
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCT
Found at i:50645033 original size:51 final size:51
Alignment explanation
Indices: 50644862--50645034 Score: 224
Period size: 51 Copynumber: 3.4 Consensus size: 51
50644852 CTGGTACACG
* * * * ** *
50644862 TAGTAGCCTGCATTTAGTACTACACACGTGA-CTTAA-CCATTTGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACATGATC-GAAGCTATCGGATACGCA
* * * *
50644912 TAGTAGCCTGCACTTAGTAATACACTCATGATCGAAGCTATCGGGTACGTA
1 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTATCGGATACGCA
50644963 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTATCGGATACGCA
1 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTATCGGATACGCA
50645014 TAGTAGCCTGCACTTAGTACT
1 TAGTAGCCTGCACTTAGTACT
50645035 GTACATGCGA
Statistics
Matches: 106, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
50 29 0.27
51 77 0.73
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTATCGGATACGCA
Found at i:50650744 original size:85 final size:85
Alignment explanation
Indices: 50650613--50650771 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 85
50650603 ATCTCGTACA
* * * * * *
50650613 ATGCCAATGTCCCAGATGTGGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCTAGATAG-G
1 ATGCCAACGTCCCAAATATGGTCTTACACGTAATCAAATATAGATGCCAAC-GTCCAAGA-AGTG
50650676 GTCTTACATGAAATCAAATAAG
64 GTCTTACATGAAATCAAATAAG
*
50650698 ATGCCAACGTCCCAAATATGGTCTTACACGTAAATCAAATA-AGATGCCAACGTCCAAGACGTGG
1 ATGCCAACGTCCCAAATATGGTCTTACACGT-AATCAAATATAGATGCCAACGTCCAAGAAGTGG
50650762 TCTTACATGA
65 TCTTACATGA
50650772 TAACACATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
84 1 0.02
85 52 0.81
86 11 0.17
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (85 bp):
ATGCCAACGTCCCAAATATGGTCTTACACGTAATCAAATATAGATGCCAACGTCCAAGAAGTGGT
CTTACATGAAATCAAATAAG
Found at i:50650747 original size:43 final size:43
Alignment explanation
Indices: 50650613--50650770 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 43
50650603 ATCTCGTACA
* * *
50650613 ATGCCAATGTCCCAGATGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGATATGGTCTTACATGTAAATCAAATA-AG
* *
50650656 ATGCC-ACTGTCCTAGATAGGGTCTTACATG-AAATCAAATAAG
1 ATGCCAAC-GTCCCAGATATGGTCTTACATGTAAATCAAATAAG
* *
50650698 ATGCCAACGTCCCAAATATGGTCTTACACGTAAATCAAATAAG
1 ATGCCAACGTCCCAGATATGGTCTTACATGTAAATCAAATAAG
* **
50650741 ATGCCAACGTCCAAGACGTGGTCTTACATG
1 ATGCCAACGTCCCAGATATGGTCTTACATG
50650771 ATAACACATA
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
42 25 0.26
43 72 0.74
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGATATGGTCTTACATGTAAATCAAATAAG
Found at i:50656881 original size:54 final size:56
Alignment explanation
Indices: 50656790--50656895 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 56
50656780 TAGGGACGCT
*
50656790 ACTGACTTGGGTCACACGGCCAGTCACAAGCCTGTGTGT-CTAACC-TGTGGTAGAA
1 ACTGACTTGGGCCACACGGCCAGTCACAAGCCTGTGTGTGC-AACCGTGTGGTAGAA
*
50656845 ACTGACTT-GGCCACACGGCCTAG-CAGAATGCC-GTGTGTGCAACCGTGTGGT
1 ACTGACTTGGGCCACACGGCC-AGTCACAA-GCCTGTGTGTGCAACCGTGTGGT
50656896 CTGCCCAGAC
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
54 25 0.56
55 20 0.44
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (56 bp):
ACTGACTTGGGCCACACGGCCAGTCACAAGCCTGTGTGTGCAACCGTGTGGTAGAA
Found at i:50657972 original size:42 final size:42
Alignment explanation
Indices: 50657872--50658031 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 42
50657862 ATCTCGTACA
* * * *
50657872 ATGCCAATGTCCCAAATGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACACGAAATCAAATA-CG
*
50657915 ATGCC-ACTATCCCAGATAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGAT-GTGGTCTTACACGAAATCAAATACG
*
50657957 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAATCATAAGT-CA
1 ATGCCAACGTCCCAGATGTGGTCTTACACG-AAATCA-AA-TACG
* *
50658001 ATGCCAACGTCCTAGACGTGGTCTTACACGA
1 ATGCCAACGTCCCAGATGTGGTCTTACACGA
50658032 TAACACATAT
Statistics
Matches: 101, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 40 0.40
44 32 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGATGTGGTCTTACACGAAATCAAATACG
Found at i:50671058 original size:23 final size:22
Alignment explanation
Indices: 50671032--50671075 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50671022 TTAATTGTGA
50671032 GCAA-GTGTTGGTTAGGGTATCTT
1 GCAATGTGTT-GTT-GGGTATCTT
*
50671055 GCAATTTGTTGTTGGGTATCT
1 GCAATGTGTTGTTGGGTATCT
50671076 AACTGAAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
23 7 0.37
24 4 0.21
ACGTcount: A:0.16, C:0.09, G:0.32, T:0.43
Consensus pattern (22 bp):
GCAATGTGTTGTTGGGTATCTT
Found at i:50674509 original size:6 final size:6
Alignment explanation
Indices: 50674479--50674566 Score: 63
Period size: 6 Copynumber: 14.3 Consensus size: 6
50674469 AAGAAACATT
* * * * *
50674479 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ACCATGTG A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* *
50674528 ATCAGA ATCAGA ATCAGA TAACAGA ATTAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA -ATCAGA ATCAGA ATCAGA AT
50674567 GTGAATGAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
5 2 0.03
6 52 0.81
7 9 0.14
8 1 0.02
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:50674566 original size:25 final size:25
Alignment explanation
Indices: 50674500--50674566 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
50674490 AATCAAAATG
* *
50674500 AGAATTAGAATCAGAACCATGTGAC
1 AGAATTAGAATCAGAATCATGTAAC
*
50674525 AGAATCAGAATCAGAATCA-GATAAC
1 AGAATTAGAATCAGAATCATG-TAAC
50674550 AGAATTAGAATCAGAAT
1 AGAATTAGAATCAGAAT
50674567 GTGAATGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (25 bp):
AGAATTAGAATCAGAATCATGTAAC
Found at i:50675343 original size:27 final size:27
Alignment explanation
Indices: 50675313--50675455 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
50675303 GGGCAAAATG
* * *
50675313 GTAATTTTACCCCATAAGGGTATCTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
* * *
50675340 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCA
*
50675367 GT-ATTTCTACCCTACAAGGGTATTTCG
1 GTAATTT-TACCCTACAAGGGTATTTCA
* * * *
50675394 GTAATTCTACCCTATAGGGGTGTTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
50675421 GTAATTTTACCCTACAAGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
*
50675448 ATAATTTT
1 GTAATTTT
50675456 GTAAATCGAG
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
26 3 0.03
27 90 0.94
28 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCA
Found at i:50675359 original size:54 final size:54
Alignment explanation
Indices: 50675301--50675413 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 54
50675291 TTAACACCCT
*
50675301 AGGGGCAAAAT-GGTAATTT-TACCCCATAAGGGTATCTCAGTAATTCTACCCTAC
1 AGGGG-AAAATCGGT-ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
* ** * * * *
50675355 AGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAT
1 AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
50675409 AGGGG
1 AGGGG
50675414 TGTTTCAGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
53 6 0.12
54 43 0.88
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (54 bp):
AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTAC
Found at i:50675414 original size:54 final size:54
Alignment explanation
Indices: 50675313--50675453 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 54
50675303 GGGCAAAATG
* * * *
50675313 GTAATTTTACCCCATAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * *
50675367 GT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTGTTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
*
50675421 GTAATTTTACCCTACAAGGGTATTTCAATAATT
1 GTAATTTTACCCTACAAGGGTATTTCAGTAATT
50675454 TTGTAAATCG
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
53 4 0.05
54 68 0.89
55 4 0.05
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:50679488 original size:27 final size:26
Alignment explanation
Indices: 50679457--50679634 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
50679447 TAAATTGTAC
50679457 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
50679484 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
50679510 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
50679538 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
50679566 AGCACTAAGTGTGCGATTGGATTACGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
50679593 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
50679620 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50679635 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
26 3 0.02
27 98 0.77
28 27 0.21
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:50679598 original size:82 final size:81
Alignment explanation
Indices: 50679458--50679613 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
50679448 AAATTGTACA
* *
50679458 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
50679523 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * *
50679539 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAAT-GAATACGAT-GCACTAAG
*
50679602 TGTGCGAGTTGA
63 TGTGCGAATTGA
50679614 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50679625 original size:82 final size:81
Alignment explanation
Indices: 50679454--50679634 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 81
50679444 GATTAAATTG
* *
50679454 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50679519 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
50679535 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAAT-GAATACGAT-GCAC
* **
50679598 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
50679617 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50679635 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50679645 original size:27 final size:27
Alignment explanation
Indices: 50679539--50679645 Score: 65
Period size: 27 Copynumber: 3.9 Consensus size: 27
50679529 TGACCATGCG
* * * *
50679539 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
* **
50679567 GCACTAAGTGTGCGA-TTGGAT-TACGTA
1 GCACTAAGTGTGCGAGCTCAATATA--TA
* * *
50679594 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
50679621 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
50679646 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.02
26 4 0.06
27 39 0.60
28 19 0.29
29 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:50687374 original size:27 final size:26
Alignment explanation
Indices: 50687343--50687520 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
50687333 TAAATTGTAC
50687343 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
50687370 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
50687396 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
50687424 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
50687452 AGCACTAAGTGTGCGATTGGATTACGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
50687479 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
50687506 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50687521 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
26 3 0.02
27 98 0.77
28 27 0.21
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:50687484 original size:82 final size:81
Alignment explanation
Indices: 50687344--50687499 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
50687334 AAATTGTACA
* *
50687344 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
50687409 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * *
50687425 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGGATTACG-TAGCACTAAG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAAT-GAATACGAT-GCACTAAG
*
50687488 TGTGCGAGTTGA
63 TGTGCGAATTGA
50687500 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50687511 original size:82 final size:81
Alignment explanation
Indices: 50687340--50687520 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 81
50687330 GATTAAATTG
* *
50687340 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50687405 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
50687421 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAAT-GAATACGAT-GCAC
* **
50687484 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
50687503 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50687521 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50687531 original size:27 final size:27
Alignment explanation
Indices: 50687425--50687531 Score: 65
Period size: 27 Copynumber: 3.9 Consensus size: 27
50687415 TGACCATGCG
* * * *
50687425 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
* **
50687453 GCACTAAGTGTGCGA-TTGGAT-TACGTA
1 GCACTAAGTGTGCGAGCTCAATATA--TA
* * *
50687480 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
50687507 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
50687532 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.02
26 4 0.06
27 39 0.60
28 19 0.29
29 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:50692738 original size:41 final size:41
Alignment explanation
Indices: 50692681--50692832 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 41
50692671 GAGCTTGGTC
*
50692681 TCGAA-GGCTTTTGAGCCAGTGCTAATAATCGAACTTAGTT
1 TCGAAGGGCTTTAGAGCCAGTGCTAATAATCGAACTTAGTT
* * *
50692721 TCGAAGGGCTTTAGAGCCAGTG-TCATAACCGGACTTAG-T
1 TCGAAGGGCTTTAGAGCCAGTGCTAATAATCGAACTTAGTT
* * * * * * *
50692760 TCTGAAGGGCCTTCGAGCCAGTGGT-CTAATCCGAGCTTGGTC
1 TC-GAAGGGCTTTAGAGCCAGTGCTAATAAT-CGAACTTAGTT
* *
50692802 TCGAAGGGCTTTA-AGCTAGTGCTAAGAATCG
1 TCGAAGGGCTTTAGAGCCAGTGCTAATAATCG
50692833 GGCTTGATTC
Statistics
Matches: 88, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
39 3 0.03
40 49 0.56
41 34 0.39
42 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGAAGGGCTTTAGAGCCAGTGCTAATAATCGAACTTAGTT
Found at i:50712676 original size:33 final size:33
Alignment explanation
Indices: 50712634--50712700 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
50712624 TCATGTGATT
50712634 GACTTAGTTGAGAACTTAAGAAAATATGATAGG
1 GACTTAGTTGAGAACTTAAGAAAATATGATAGG
50712667 GACTTAGTTGAGAACTTAAGAAAATATGATAGG
1 GACTTAGTTGAGAACTTAAGAAAATATGATAGG
50712700 G
1 G
50712701 GAATATGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.27
Consensus pattern (33 bp):
GACTTAGTTGAGAACTTAAGAAAATATGATAGG
Found at i:50714005 original size:28 final size:28
Alignment explanation
Indices: 50713973--50714042 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
50713963 AATGAGATTG
* *
50713973 GCACTAACTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
50714001 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
50714029 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
50714043 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:50714315 original size:12 final size:12
Alignment explanation
Indices: 50714298--50714322 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50714288 GTGGAAATGC
50714298 ATCAAATATCAT
1 ATCAAATATCAT
50714310 ATCAAATATCAT
1 ATCAAATATCAT
50714322 A
1 A
50714323 CGAGATGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (12 bp):
ATCAAATATCAT
Found at i:50718837 original size:71 final size:67
Alignment explanation
Indices: 50718759--50718900 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
50718749 TCATCAGATA
* * * * *
50718759 CAGATATTATGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACTAGATTGCAGTGA
1 CAGATATTATGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
50718824 GGCTAC
62 GGCTAC
* * * *
50718830 CAGATATTGTGACGAAGTCACTAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTATGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
50718895 AC
66 AC
50718897 CAGA
1 CAGA
50718901 ACACTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 39 0.63
71 23 0.37
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.20
Consensus pattern (67 bp):
CAGATATTATGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
AC
Found at i:50726304 original size:22 final size:20
Alignment explanation
Indices: 50726278--50726334 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 20
50726268 ACCATATTAC
50726278 AGCGAGGCTGCCAGATATATGT
1 AGCGAGGCTGCCAGA-AT-TGT
* **
50726300 GGCGAGGCCACCAG-ATTGT
1 AGCGAGGCTGCCAGAATTGT
50726319 AGCGAGGCTGCCAGAA
1 AGCGAGGCTGCCAGAA
50726335 CGCTTCCTCC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
19 14 0.50
20 3 0.11
22 11 0.39
ACGTcount: A:0.26, C:0.23, G:0.35, T:0.16
Consensus pattern (20 bp):
AGCGAGGCTGCCAGAATTGT
Found at i:50726310 original size:41 final size:41
Alignment explanation
Indices: 50726251--50726333 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 41
50726241 GAACAGATAT
*
50726251 ATATATGTGACGAAGCCACCATATTACAGCGAGGCTGCCAG
1 ATATATGTGACGAAGCCACCAGATTACAGCGAGGCTGCCAG
* * **
50726292 ATATATGTGGCGAGGCCACCAGATTGTAGCGAGGCTGCCAG
1 ATATATGTGACGAAGCCACCAGATTACAGCGAGGCTGCCAG
50726333 A
1 A
50726334 ACGCTTCCTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (41 bp):
ATATATGTGACGAAGCCACCAGATTACAGCGAGGCTGCCAG
Found at i:50726582 original size:8 final size:8
Alignment explanation
Indices: 50726569--50726600 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
50726559 TACCAAAGTG
50726569 GGCCCATT
1 GGCCCATT
50726577 GGCCCATT
1 GGCCCATT
50726585 GGCCCATT
1 GGCCCATT
50726593 GGCCCATT
1 GGCCCATT
50726601 TTCGGCCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.12, C:0.38, G:0.25, T:0.25
Consensus pattern (8 bp):
GGCCCATT
Found at i:50732538 original size:48 final size:48
Alignment explanation
Indices: 50732465--50732561 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
50732455 CGACTGTTTT
* *
50732465 GCGTATACCTAGTTTCAATATTTTGAGTATGGCATGTATAGGGACTTG
1 GCGTATACCCAGTTTCAATAGTTTGAGTATGGCATGTATAGGGACTTG
50732513 GCGTATACCCAGTTTCAATAGTTTGAGTATGGCATGTATAGGGACTTG
1 GCGTATACCCAGTTTCAATAGTTTGAGTATGGCATGTATAGGGACTTG
50732561 G
1 G
50732562 TCATTTTGCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (48 bp):
GCGTATACCCAGTTTCAATAGTTTGAGTATGGCATGTATAGGGACTTG
Found at i:50734329 original size:16 final size:16
Alignment explanation
Indices: 50734310--50734341 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50734300 ATTGTAACAC
50734310 CCCAAAAAACTCGAAA
1 CCCAAAAAACTCGAAA
*
50734326 CCCAAAAATCTCGAAA
1 CCCAAAAAACTCGAAA
50734342 TCTCAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.31, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAAACTCGAAA
Found at i:50735905 original size:28 final size:29
Alignment explanation
Indices: 50735866--50735953 Score: 117
Period size: 28 Copynumber: 3.1 Consensus size: 29
50735856 AATGTGACTA
50735866 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAACGGGCCATATAAATGTGATTTG
* *
50735895 GGCCTAA-GGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATGTGATTTG
* * *
50735923 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAACGGGCCATATAAATGTGATTTG
50735951 GGC
1 GGC
50735954 TTAGTGGGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
28 32 0.62
29 20 0.38
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
GGCCTAACGGGCCATATAAATGTGATTTG
Found at i:50742525 original size:40 final size:40
Alignment explanation
Indices: 50742473--50742664 Score: 244
Period size: 40 Copynumber: 4.8 Consensus size: 40
50742463 TATAACCACA
* * * * *
50742473 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
** *
50742513 CCCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
*
50742553 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
* *
50742593 AGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
*
50742633 AGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
50742665 TCATTCAAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 133 0.97
41 4 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
Found at i:50747613 original size:27 final size:27
Alignment explanation
Indices: 50747594--50747743 Score: 149
Period size: 27 Copynumber: 5.5 Consensus size: 27
50747584 GCACAGTCAA
*
50747594 TGCTATATAATCAACTCGCACACTTAG
1 TGCTACATAATCAACTCGCACACTTAG
* *
50747621 TGCTACGTAATCAAATCGCACACTTAG
1 TGCTACATAATCAACTCGCACACTTAG
*
50747648 TGCTACATAGTCAAACTCGCACACTTAG
1 TGCTACATAATC-AACTCGCACACTTAG
** ** *
50747676 TGCCGCATGGTCAATTCGCACACTTAG
1 TGCTACATAATCAACTCGCACACTTAG
* **
50747703 TGC-ATCATATTCATTTCGCACACTTAG
1 TGCTA-CATAATCAACTCGCACACTTAG
* *
50747730 TGCAACATAGTCAA
1 TGCTACATAATCAA
50747744 ATCCCCGGGT
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
27 80 0.77
28 24 0.23
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
TGCTACATAATCAACTCGCACACTTAG
Found at i:50747671 original size:55 final size:54
Alignment explanation
Indices: 50747604--50747746 Score: 171
Period size: 55 Copynumber: 2.6 Consensus size: 54
50747594 TGCTATATAA
* * *
50747604 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGC-TACATAG
1 TCAACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCAT-CATAG
** * * *
50747658 TCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATAT
1 TC-AACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCATCATAG
**
50747713 TCATTTCGCACACTTAGTGCAACATAGTCAAATC
1 TCAACTCGCACACTTAGTGCAACATAGTCAAATC
50747747 CCCGGGTGAA
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
54 28 0.38
55 45 0.61
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCATCATAG
Found at i:50752532 original size:27 final size:27
Alignment explanation
Indices: 50752502--50752679 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
50752492 ATATTGAGCC
*
50752502 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
** *
50752529 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTATATAATCAACT
*
50752556 CGCACACTTAGTGCTATATAGTCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
* *** ** *
50752584 CGCACACTTAGAGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATATAATCAACT
* **
50752611 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTAT-ATAATCAACT
* * * *
50752638 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTATATAATCAACT
50752665 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50752680 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:50752641 original size:82 final size:81
Alignment explanation
Indices: 50752523--50752675 Score: 218
Period size: 82 Copynumber: 1.9 Consensus size: 81
50752513 TGCTATATAA
* * *
50752523 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTATATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50752588 CACTTAGAGCCGCATGG
65 CACTTAGAGCCGCATGG
* * **
50752605 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50752669 CACTTAG
65 CACTTAG
50752676 TGCTGTACAA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 13 0.21
82 50 0.79
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGAGCCGCATGG
Found at i:50752662 original size:54 final size:54
Alignment explanation
Indices: 50752502--50752679 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
50752492 ATATTGAGCC
* * * *
50752502 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* * ** * *
50752556 CGCACACTTAGTGCTATATAGTCAAACTCGCACACTTAGAGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
50752611 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTAT-ATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
50752665 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50752680 GTACAATTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
54 61 0.59
55 43 0.41
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:50753252 original size:13 final size:13
Alignment explanation
Indices: 50753234--50753258 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50753224 TACTAAATTT
50753234 TCATGGATTCAAG
1 TCATGGATTCAAG
50753247 TCATGGATTCAA
1 TCATGGATTCAA
50753259 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:50754032 original size:23 final size:23
Alignment explanation
Indices: 50754002--50754047 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
50753992 TCCTCCCTTA
50754002 TTTTATTCA-TCCTTTCTTTTCT
1 TTTTATTCACTCCTTTCTTTTCT
* *
50754024 TTTTAATTCACTTCTTTTTTTTCT
1 TTTT-ATTCACTCCTTTCTTTTCT
50754048 AATCCACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 5 0.25
24 11 0.55
ACGTcount: A:0.11, C:0.20, G:0.00, T:0.70
Consensus pattern (23 bp):
TTTTATTCACTCCTTTCTTTTCT
Found at i:50754040 original size:20 final size:20
Alignment explanation
Indices: 50754015--50754056 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
50754005 TATTCATCCT
*
50754015 TTCTTTTCTTTT-TAATTCAC
1 TTCTTTT-TTTTCTAATCCAC
50754035 TTCTTTTTTTTCTAATCCAC
1 TTCTTTTTTTTCTAATCCAC
50754055 TT
1 TT
50754057 ACCAATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.14, C:0.21, G:0.00, T:0.64
Consensus pattern (20 bp):
TTCTTTTTTTTCTAATCCAC
Found at i:50755553 original size:29 final size:29
Alignment explanation
Indices: 50755511--50755568 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
50755501 TATCTTCTAT
* *
50755511 TAGGATTAGCGTTTTGATATGATAATAAA
1 TAGGAATAGCGTTTCGATATGATAATAAA
*
50755540 TAGGAATAGCGTTTCGATATGATACTAAA
1 TAGGAATAGCGTTTCGATATGATAATAAA
50755569 AATGGGTTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (29 bp):
TAGGAATAGCGTTTCGATATGATAATAAA
Found at i:50756058 original size:21 final size:21
Alignment explanation
Indices: 50756034--50756168 Score: 85
Period size: 21 Copynumber: 6.7 Consensus size: 21
50756024 GTATACAAAA
50756034 AATATAAATAAATATATATAT
1 AATATAAATAAATATATATAT
*
50756055 AATAATATATAAATATAATATAT
1 AAT-ATAAATAAATAT-ATATAT
50756078 AA-ATATAA-AAATATATA-A-
1 AATATA-AATAAATATATATAT
* *
50756096 AATAT--TTAGA-ATATATAT
1 AATATAAATAAATATATATAT
*
50756114 AATA-AAATAGATATAATATAT
1 AATATAAATAAATAT-ATATAT
*
50756135 AA-ATAAATTGAATATA-ATATT
1 AATATAAA-TAAATATATATA-T
*
50756156 AA-ATAGATAAATA
1 AATATAAATAAATA
50756169 AATTAAATCA
Statistics
Matches: 91, Mismatches: 9, Indels: 29
0.71 0.07 0.22
Matches are distributed among these distances:
16 5 0.05
17 3 0.03
18 6 0.07
19 7 0.08
20 14 0.15
21 31 0.34
22 17 0.19
23 8 0.09
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (21 bp):
AATATAAATAAATATATATAT
Found at i:50756070 original size:18 final size:18
Alignment explanation
Indices: 50756033--50756139 Score: 81
Period size: 14 Copynumber: 6.3 Consensus size: 18
50756023 TGTATACAAA
50756033 AAATATA-AATAA-ATAT
1 AAATATATAATAATATAT
50756049 --ATATATAATAATATAT
1 AAATATATAATAATATAT
*
50756065 AAATATAATATATAAATATAA
1 AAATAT-ATA-AT-AATATAT
*
50756086 AAATATATAA-AATATTT
1 AAATATATAATAATATAT
50756103 AGAATATAT-AT-A-ATA-
1 A-AATATATAATAATATAT
*
50756118 AAATAGAT-ATAATATAT
1 AAATATATAATAATATAT
50756135 AAATA
1 AAATA
50756140 AATTGAATAT
Statistics
Matches: 74, Mismatches: 5, Indels: 23
0.73 0.05 0.23
Matches are distributed among these distances:
14 13 0.18
15 7 0.09
16 9 0.12
17 13 0.18
18 11 0.15
19 4 0.05
20 5 0.07
21 12 0.16
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
AAATATATAATAATATAT
Found at i:50756112 original size:41 final size:38
Alignment explanation
Indices: 50756034--50756137 Score: 93
Period size: 41 Copynumber: 2.6 Consensus size: 38
50756024 GTATACAAAA
* * *
50756034 AATATAAATAAATATATATATAATAATATATAAATATAAT
1 AATA-AAATAAAAATATATAAAATAATATAGAAATAT-AT
*
50756074 ATATAAATATAAAAATATATAAAAT-ATTTAGAATATATAT
1 A-ATAAA-ATAAAAATATATAAAATAATATAGAA-ATATAT
50756114 AATAAAATAGATATAATATATAAA
1 AATAAAATA-A-A-AATATATAAA
50756138 TAAATTGAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
38 3 0.06
39 6 0.11
40 13 0.24
41 32 0.59
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (38 bp):
AATAAAATAAAAATATATAAAATAATATAGAAATATAT
Found at i:50756176 original size:38 final size:38
Alignment explanation
Indices: 50756041--50756176 Score: 114
Period size: 40 Copynumber: 3.4 Consensus size: 38
50756031 AAAAATATAA
* *
50756041 ATAAATATATATATAATAATATATAAATATAATATATAAATAT
1 ATAAATATAT-TA-AATAAT-TA-GAATATAATAT-TAAATAG
* * * *
50756084 AAAAATATATAAAATATTTAGAATATATATAATAAAATAG
1 ATAAATATATTAAATAATTAGAATATA-AT-ATTAAATAG
50756124 ATATAATATA-TAAATAAATT-GAATATAATATTAAATAG
1 ATA-AATATATTAAAT-AATTAGAATATAATATTAAATAG
*
50756162 ATAAATAAATTAAAT
1 ATAAATATATTAAAT
50756177 CAAAAGAGTT
Statistics
Matches: 77, Mismatches: 11, Indels: 15
0.75 0.11 0.15
Matches are distributed among these distances:
37 5 0.06
38 16 0.21
39 8 0.10
40 22 0.29
41 16 0.21
42 1 0.01
43 9 0.12
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (38 bp):
ATAAATATATTAAATAATTAGAATATAATATTAAATAG
Found at i:50762392 original size:40 final size:40
Alignment explanation
Indices: 50762348--50762570 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
50762338 TACTTGCTCG
* *
50762348 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
50762388 AATGCTTTCGGGACTTAGCCCGGAAATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
50762428 AATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGGACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
50762468 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * * *
50762508 AATGCCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
50762548 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
50762571 TTATCATCCA
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 3 0.02
40 163 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:50770579 original size:39 final size:40
Alignment explanation
Indices: 50770476--50770730 Score: 333
Period size: 39 Copynumber: 6.5 Consensus size: 40
50770466 AAGCCAAGTA
* * * * *
50770476 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
50770515 CCTTCGAGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50770555 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50770594 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50770633 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
50770672 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50770712 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50770731 TTATCATCCA
Statistics
Matches: 195, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 126 0.65
40 68 0.35
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50778486 original size:47 final size:47
Alignment explanation
Indices: 50778425--50779340 Score: 1537
Period size: 47 Copynumber: 19.4 Consensus size: 47
50778415 CAGCCAAGAC
*
50778425 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50778472 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50778519 AGTGTATATATATGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
50778566 AGTGTATATGTGTGATAAGGTCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
50778613 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50778660 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50778707 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
50778756 AGTGTATATGTGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
50778803 AGTGTATATATGTGGTAAGGCCTAATAGCCGATATGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50778850 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
50778897 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50778944 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50778991 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50779038 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50779087 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
50779134 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50779181 AGTGTATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
50779228 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * *
50779275 AGTGTATATATGTGACAGGGCCGAGT-GGCGAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCG-ATGTGATGAATGTGAA
* *
50779322 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
50779341 TCCCGAAGGG
Statistics
Matches: 825, Mismatches: 39, Indels: 10
0.94 0.04 0.01
Matches are distributed among these distances:
46 3 0.00
47 728 0.88
49 94 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:50779286 original size:284 final size:282
Alignment explanation
Indices: 50778425--50779340 Score: 1609
Period size: 284 Copynumber: 3.2 Consensus size: 282
50778415 CAGCCAAGAC
*
50778425 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
50778490 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
*
50778555 ATGAATGTGAAAGTGTATATGTGTGATAAGGTCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
131 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
50778620 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
196 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
50778685 TGGCCGATGTGATGAATGTGAA
261 TGGCCGATGTGATGAATGTGAA
*
50778707 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * *
50778772 AAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATAGCCGATA
64 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
50778837 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
129 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
50778902 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
194 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
50778967 AATGGCCGATGTGATGAATGTGAA
259 AATGGCCGATGTGATGAATGTGAA
50778991 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
* *
50779056 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
64 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
*
50779121 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
129 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
*
50779186 ATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
194 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
50779251 AATGGCCGATGTGATGAATGTGAA
259 AATGGCCGATGTGATGAATGTGAA
* * * * * * * *
50779275 AGTGTATATATGTGACAGGGCCGAGTGG-CGAACGTGATGGATGTGAAAGTGCATAAATGTGATA
1 AGTGTATATATGTGATAAGGCCTAATGGCCG-ATGTGATGAATGTGAAAGTGTATATATGTGATA
50779339 AG
65 AG
50779341 TCCCGAAGGG
Statistics
Matches: 608, Mismatches: 21, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
282 64 0.11
283 2 0.00
284 542 0.89
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (282 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
ATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAA
Found at i:50779515 original size:37 final size:37
Alignment explanation
Indices: 50779459--50779537 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50779449 CCGAGCTCTA
* *
50779459 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
50779496 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50779533 AAGAC
1 AAGAC
50779538 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50793571 original size:53 final size:52
Alignment explanation
Indices: 50793458--50793597 Score: 181
Period size: 53 Copynumber: 2.6 Consensus size: 52
50793448 GATACCGTGC
*
50793458 AAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGT
1 AAGACCATGCCAAGGCATGGC-ATTGGTAA-G-TTCTAAGGCAAGGAAACCATGT
* * **
50793513 AAGACCATTCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGCTACCATGT
1 AAGACCATGCCAAGGCATGGCATTGGTAAGTTC-TAAGGCAAGGAAACCATGT
* *
50793566 AAGACCATGCCAAGACATGGCAATGGTAAGTT
1 AAGACCATGCCAAGGCATGGCATTGGTAAGTT
50793598 TCAAAAGGAT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
52 3 0.04
53 45 0.60
54 7 0.09
55 20 0.27
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (52 bp):
AAGACCATGCCAAGGCATGGCATTGGTAAGTTCTAAGGCAAGGAAACCATGT
Done.