Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 160 of 316
Found at i:50798433 original size:22 final size:22
Alignment explanation
Indices: 50798405--50798526 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
50798395 TTCCACATCC
50798405 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
50798427 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
50798451 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
50798474 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
50798498 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
50798521 ATCACA
1 ATCACA
50798527 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:50798440 original size:47 final size:47
Alignment explanation
Indices: 50798377--50799032 Score: 845
Period size: 47 Copynumber: 13.6 Consensus size: 47
50798367 CCCTTCGGGA
* * *
50798377 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50798424 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
50798471 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
50798518 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
50798565 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
50798612 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
50798659 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
50798706 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
50798755 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
50798802 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
50798851 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
50798898 CTTATCACATATATACACTTTCACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACAT-T-CA---T--CA--CAT----T-GGCCATTCGGC
* * *
50798959 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50799006 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
50799033 TATTCAAATA
Statistics
Matches: 565, Mismatches: 24, Indels: 40
0.90 0.04 0.06
Matches are distributed among these distances:
46 1 0.00
47 418 0.74
48 1 0.00
49 92 0.16
50 1 0.00
52 4 0.01
54 4 0.01
56 4 0.01
59 2 0.00
60 1 0.00
61 37 0.07
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:50798923 original size:16 final size:16
Alignment explanation
Indices: 50798902--50798937 Score: 58
Period size: 14 Copynumber: 2.4 Consensus size: 16
50798892 TTAGGCCTTA
50798902 TCACATATATACACTT
1 TCACATATATACACTT
50798918 TCAC--ATATACACTT
1 TCACATATATACACTT
50798932 TCACAT
1 TCACAT
50798938 TCATCACATC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
14 14 0.78
16 4 0.22
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (16 bp):
TCACATATATACACTT
Found at i:50798927 original size:14 final size:14
Alignment explanation
Indices: 50798908--50798937 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
50798898 CTTATCACAT
50798908 ATATACACTTTCAC
1 ATATACACTTTCAC
50798922 ATATACACTTTCAC
1 ATATACACTTTCAC
50798936 AT
1 AT
50798938 TCATCACATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATACACTTTCAC
Found at i:50798930 original size:61 final size:61
Alignment explanation
Indices: 50798861--50798984 Score: 248
Period size: 61 Copynumber: 2.0 Consensus size: 61
50798851 CTTATCACAT
50798861 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
50798922 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
50798983 AT
1 AT
50798985 TCATCACATC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (61 bp):
ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
Found at i:50798936 original size:108 final size:108
Alignment explanation
Indices: 50798814--50799031 Score: 427
Period size: 108 Copynumber: 2.0 Consensus size: 108
50798804 TATCACATAT
50798814 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
50798879 ATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
66 ATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
*
50798922 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
50798987 ATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
66 ATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
50799030 AT
1 AT
50799032 TTATTCAAAT
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (108 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
ATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
Found at i:50800427 original size:85 final size:85
Alignment explanation
Indices: 50800298--50800476 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
50800288 TATTTTATTG
*
50800298 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
50800363 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
50800383 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
50800448 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
50800468 CCCATGCTC
1 CCCATGCTC
50800477 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:50801811 original size:40 final size:40
Alignment explanation
Indices: 50801756--50802012 Score: 376
Period size: 40 Copynumber: 6.4 Consensus size: 40
50801746 GATGATAACG
50801756 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
50801796 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
*
50801836 GGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
** * *
50801876 GGGCTAAGTCGTGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* * *
50801916 GGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
* *
50801956 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTAAT-TCC
50801996 GGGCTAAGTCCCGAAGG
1 GGGCTAAGTCCCGAAGG
50802013 TACTTGGTTT
Statistics
Matches: 203, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 199 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
Found at i:50810261 original size:51 final size:51
Alignment explanation
Indices: 50810198--50810297 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
50810188 CTACGACATA
* * *
50810198 ACATGTAACACATCCATAATGAACTCGGACCTCTCAATGAGCTCGGATGTT
1 ACATGTAACACATCCACAATGAACTCAGACCTCTCAACGAGCTCGGATGTT
*
50810249 ACATG-AATCACATCCACCATGAACTCAGACCTCTCAACGAGCTCGGATG
1 ACATGTAA-CACATCCACAATGAACTCAGACCTCTCAACGAGCTCGGATG
50810298 CCACATATCT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 2 0.05
51 42 0.95
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (51 bp):
ACATGTAACACATCCACAATGAACTCAGACCTCTCAACGAGCTCGGATGTT
Found at i:50815602 original size:43 final size:46
Alignment explanation
Indices: 50815548--50815665 Score: 163
Period size: 45 Copynumber: 2.7 Consensus size: 46
50815538 CGGGCTTCAG
* *
50815548 GCCTAGCAGGCTATAATGCTGGTGAAATGA-TA-TCG-GGCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATTATTCGAGCCTTTGA
* * *
50815591 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATTATTCGAGCCTTTGA
50815636 GCCTAGCAGGCTATAATGCCGGTGAAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
50815666 AATGTTATGT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
42 1 0.02
43 26 0.41
44 3 0.05
45 32 0.51
46 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (46 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATTATTCGAGCCTTTGA
Found at i:50815978 original size:38 final size:37
Alignment explanation
Indices: 50815935--50816137 Score: 203
Period size: 38 Copynumber: 5.4 Consensus size: 37
50815925 ATGATATTTG
*
50815935 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGG-AATTA
1 TATCCGGGTTAAA-ACCGCAGGCT-TCATGCTGGTAA-TA
* * *
50815973 TATCCGAGTTAAATCCTGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAAACC-GCAGGCTTCATGCTGGTAATA
* *
50816011 TATCGGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
1 TATCCGGGTTAAA-ACCGCAGGCTTCATGCTGGTAATA
** *
50816049 TATCCGGGTTAATTCCTGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAAACC-GCAGGCTTCATGCTGGTAATA
* * * * *
50816087 TATCCGAGTTAAATCCTGCAGGTTTCGTGCTGGTATTA
1 TATCCGGGTTAAAACC-GCAGGCTTCATGCTGGTAATA
50816125 TATCCGGGTTAAA
1 TATCCGGGTTAAA
50816138 TCCCGCAAGC
Statistics
Matches: 143, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
37 5 0.03
38 134 0.94
39 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (37 bp):
TATCCGGGTTAAAACCGCAGGCTTCATGCTGGTAATA
Found at i:50816138 original size:38 final size:38
Alignment explanation
Indices: 50815962--50816165 Score: 275
Period size: 38 Copynumber: 5.4 Consensus size: 38
50815952 GCAGGCTATA
*
50815962 TGCTGG-AATTATATCCGAGTTAAATCCTGCAGGCTTCG
1 TGCTGGTAA-TATATCCGGGTTAAATCCTGCAGGCTTCG
* * *
50816000 TGCTGGTAATATATCGGGGTTAAATCCCGCAGGCTTCA
1 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
*
50816038 TGCTGGTAATATATCCGGGTTAATTCCTGCAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
* *
50816076 TGCTGGTAATATATCCGAGTTAAATCCTGCAGGTTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
* * * * *
50816114 TGCTGGTATTATATCCGGGTTAAATCCCGCAAGCCTAG
1 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
*
50816152 TGCTGGTATTATAT
1 TGCTGGTAATATAT
50816166 TCAGGCCTTT
Statistics
Matches: 147, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 145 0.99
39 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.33
Consensus pattern (38 bp):
TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
Found at i:50816229 original size:45 final size:45
Alignment explanation
Indices: 50816163--50816334 Score: 174
Period size: 45 Copynumber: 3.9 Consensus size: 45
50816153 GCTGGTATTA
* * *
50816163 TATTCAGGCCTTTGAGTCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
50816208 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * * *
50816253 TATTCGGG-CTTTCGAGCC-AACAGGCTATAATGCCGATGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA-CAC
* * * *
50816297 TAATCGGGCC-TCGATCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
50816335 TTTTAGAAAA
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
43 14 0.13
44 39 0.36
45 54 0.50
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:50820628 original size:50 final size:49
Alignment explanation
Indices: 50820509--50820732 Score: 194
Period size: 50 Copynumber: 4.6 Consensus size: 49
50820499 TGATATGTGT
50820509 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-ACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGACA-TATGAGA
* * * *
50820555 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACT-TGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGACA-TATGAGA
* ** *
50820605 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGTTTCGATATATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTCGACATATGAGA
* * * **
50820655 G-TCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTTGATGTAT--GA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGACATATGAGA
* * *
50820703 GCCAGTGTAAGACCATGTCTTGGACGTGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGC
50820733 GTCTGCATCT
Statistics
Matches: 148, Mismatches: 20, Indels: 18
0.80 0.11 0.10
Matches are distributed among these distances:
46 10 0.07
47 14 0.09
48 34 0.23
49 4 0.03
50 82 0.55
51 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGACATATGAGA
Found at i:50820665 original size:100 final size:96
Alignment explanation
Indices: 50820509--50820688 Score: 252
Period size: 100 Copynumber: 1.8 Consensus size: 96
50820499 TGATATGTGT
*
50820509 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAATGTAAGACCATGTC
50820574 TGGGACATGGCATCGGCCTCGAGACTTGAAA
66 TGGGACATGGCATCGGCCTCGAGACTTGAAA
* *** * *
50820605 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGTTTCGATATATGAGAGTCAGTGTAAGACCA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-AT-TATGAGAGCCAATGTAAGACCA
*
50820670 TGTTTGGGACATGGCATCG
62 TGTCTGGGACATGGCATCG
50820689 ACTTTGATGT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
96 12 0.17
97 13 0.18
98 7 0.10
99 2 0.03
100 38 0.53
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAATGTAAGACCATGTC
TGGGACATGGCATCGGCCTCGAGACTTGAAA
Found at i:50830541 original size:20 final size:21
Alignment explanation
Indices: 50830505--50830550 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
50830495 AGAGCGAAAG
*
50830505 GAAC-AAG-AAATGTGCCAAA
1 GAACAAAGAAAATGGGCCAAA
50830524 -AACAAAGAAAATGGGCCAAA
1 GAACAAAGAAAATGGGCCAAA
50830544 GAACAAA
1 GAACAAA
50830551 ATCAACATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 3 0.13
19 3 0.13
20 11 0.48
21 6 0.26
ACGTcount: A:0.59, C:0.15, G:0.20, T:0.07
Consensus pattern (21 bp):
GAACAAAGAAAATGGGCCAAA
Found at i:50844181 original size:51 final size:51
Alignment explanation
Indices: 50844104--50844302 Score: 301
Period size: 51 Copynumber: 3.9 Consensus size: 51
50844094 AGGATACACG
* *
50844104 GTGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGTTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
50844155 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* * * * * *
50844206 GTGGCTTTGACATAGTACCACTCTTGTGTCCAAAGATATTATATTTACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
50844257 GTGACCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
50844303 CTAAGGTTCA
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
50 1 0.01
51 131 0.99
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:50844363 original size:28 final size:28
Alignment explanation
Indices: 50844330--50844420 Score: 109
Period size: 28 Copynumber: 3.4 Consensus size: 28
50844320 AATTTCTCAT
*
50844330 TTAGCACAATGCCATGGACTTATTTCAG
1 TTAGCACAATGCCATGGACTTATTTCAC
* *
50844358 TTAGCACATTGTCATGGACTTATTTCAC
1 TTAGCACAATGCCATGGACTTATTTCAC
*
50844386 TTAG----ATGCCATGGTCTTATTTCAC
1 TTAGCACAATGCCATGGACTTATTTCAC
*
50844410 TTAGCATAATG
1 TTAGCACAATG
50844421 TAATATCCTA
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
24 21 0.40
28 32 0.60
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.37
Consensus pattern (28 bp):
TTAGCACAATGCCATGGACTTATTTCAC
Found at i:50844403 original size:24 final size:25
Alignment explanation
Indices: 50844338--50844416 Score: 97
Period size: 24 Copynumber: 3.1 Consensus size: 25
50844328 ATTTAGCACA
*
50844338 ATGCCATGGACTTATTTCAGTTAGCAC
1 ATGCCATGGACTTATTTCACTTAG--C
*
50844365 ATTGTCATGGACTTATTTCACTTAG-
1 A-TGCCATGGACTTATTTCACTTAGC
*
50844390 ATGCCATGGTCTTATTTCACTTAGC
1 ATGCCATGGACTTATTTCACTTAGC
50844415 AT
1 AT
50844417 AATGTAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
24 21 0.46
25 3 0.07
27 1 0.02
28 21 0.46
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (25 bp):
ATGCCATGGACTTATTTCACTTAGC
Found at i:50850252 original size:37 final size:37
Alignment explanation
Indices: 50850210--50850289 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
50850200 AATTTTACTC
50850210 AACAATTATTCTATGATTCCTAAGGAATTTAGGCTCT
1 AACAATTATTCTATGATTCCTAAGGAATTTAGGCTCT
* *
50850247 GACAATTCTTCTATGATTCCTAAGGAATTTAGGCTCT
1 AACAATTATTCTATGATTCCTAAGGAATTTAGGCTCT
50850284 AACAAT
1 AACAAT
50850290 GGTCGATTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (37 bp):
AACAATTATTCTATGATTCCTAAGGAATTTAGGCTCT
Found at i:50851243 original size:27 final size:27
Alignment explanation
Indices: 50851213--50851399 Score: 173
Period size: 27 Copynumber: 6.9 Consensus size: 27
50851203 CCTGTAGGGT
*
50851213 AAAATGACAGTTTTGCCCTTATGTGGC
1 AAAATGACAGTTTTGCCCTTATGTGTC
*
50851240 AAAATGACAGTTTTGCCCTTATGTGGC
1 AAAATGACAGTTTTGCCCTTATGTGTC
* *
50851267 AAAATGACTA-TTTTGCCCTTATTTGTT
1 AAAATGAC-AGTTTTGCCCTTATGTGTC
* * *
50851294 AAATTGA-TGATTTTGCCCTTATGTGAC
1 AAAATGACAG-TTTTGCCCTTATGTGTC
* * * *
50851321 AAAATGACTA-TTTTTCCTTTATGCGTT
1 AAAATGAC-AGTTTTGCCCTTATGTGTC
* ** *
50851348 AAATTGATGGTTTTACCCTTATGTGTC
1 AAAATGACAGTTTTGCCCTTATGTGTC
* *
50851375 AAAATGACATTTTTGCCCCTATGTG
1 AAAATGACAGTTTTGCCCTTATGTG
50851400 ATGTATGTTT
Statistics
Matches: 126, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
27 125 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.41
Consensus pattern (27 bp):
AAAATGACAGTTTTGCCCTTATGTGTC
Found at i:50851367 original size:81 final size:81
Alignment explanation
Indices: 50851213--50851400 Score: 193
Period size: 81 Copynumber: 2.3 Consensus size: 81
50851203 CCTGTAGGGT
* * *
50851213 AAAATGACAGTTTTGCCCTTATGTGGCAAAATGACAGTTTTGCCCTTATGTGGCAAAATGACTAT
1 AAAATGACATTTTTGCCCTTATGTGACAAAATGACAGTTTTGCCCTTATGCGGCAAAATGACTAT
* * *
50851278 TTTGCCCTTATTTGTT
66 TTTACCCTTATGTGTC
* * * * ** *
50851294 AAATTGATGA-TTTTGCCCTTATGTGACAAAATGACTA-TTTTTCCTTTATGCGTTAAATTGA-T
1 AAAATGA-CATTTTTGCCCTTATGTGACAAAATGAC-AGTTTTGCCCTTATGCGGCAAAATGACT
*
50851356 GGTTTTACCCTTATGTGTC
64 -ATTTTACCCTTATGTGTC
*
50851375 AAAATGACATTTTTGCCCCTATGTGA
1 AAAATGACATTTTTGCCCTTATGTGA
50851401 TGTATGTTTA
Statistics
Matches: 87, Mismatches: 16, Indels: 8
0.78 0.14 0.07
Matches are distributed among these distances:
80 2 0.02
81 83 0.95
82 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.40
Consensus pattern (81 bp):
AAAATGACATTTTTGCCCTTATGTGACAAAATGACAGTTTTGCCCTTATGCGGCAAAATGACTAT
TTTACCCTTATGTGTC
Found at i:50852275 original size:27 final size:27
Alignment explanation
Indices: 50852258--50852323 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
50852248 AAATTATTGG
*
50852258 AATACCCTTGTAGTGTAAAATGACCGT
1 AATACCCTTGTAGTGTAAAATGACTGT
* *
50852285 AATGCCCTTGTAGTGTAAAATGAGTGT
1 AATACCCTTGTAGTGTAAAATGACTGT
*
50852312 AATACCTTTGTA
1 AATACCCTTGTA
50852324 TGGTAGAATG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (27 bp):
AATACCCTTGTAGTGTAAAATGACTGT
Found at i:50852604 original size:22 final size:22
Alignment explanation
Indices: 50852569--50852611 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
50852559 TTGCGATATT
* *
50852569 TACGGCCTTTAGCCGTCCTGTC
1 TACGGCATTGAGCCGTCCTGTC
50852591 TACGGCATTGAGCCGTCCTGT
1 TACGGCATTGAGCCGTCCTGT
50852612 TGACTTAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.33, G:0.26, T:0.30
Consensus pattern (22 bp):
TACGGCATTGAGCCGTCCTGTC
Found at i:50853983 original size:43 final size:43
Alignment explanation
Indices: 50853935--50854092 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
50853925 ATTACCGAGA
* * *
50853935 TGTGATTACATGTAAGACCATGTTTGGGACATTGACATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
**
50853978 TGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * * * *
50854022 T-CGATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
50854063 ATGTGATAACATGTAAGACCATATCTGGGA
1 -TGTGATTACATGTAAGACCATGTCTGGGA
50854093 TATCGTATTG
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 89 0.93
44 4 0.04
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:50858305 original size:11 final size:11
Alignment explanation
Indices: 50858289--50858315 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
50858279 GGTAAATTGA
50858289 TTGATTATTCT
1 TTGATTATTCT
50858300 TTGATTATTCT
1 TTGATTATTCT
50858311 TTGAT
1 TTGAT
50858316 GATAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.07, G:0.11, T:0.63
Consensus pattern (11 bp):
TTGATTATTCT
Found at i:50858683 original size:20 final size:20
Alignment explanation
Indices: 50858655--50858713 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
50858645 TTTCAAAATT
*
50858655 AAGTGAAAATGATTTTAACC
1 AAGTCAAAATGATTTTAACC
* *
50858675 AAGTCAAAATGATTTCAATC
1 AAGTCAAAATGATTTTAACC
* * *
50858695 AAGTTAAACTCATTTTAAC
1 AAGTCAAAATGATTTTAAC
50858714 ACATCAAAAC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (20 bp):
AAGTCAAAATGATTTTAACC
Found at i:50859977 original size:29 final size:29
Alignment explanation
Indices: 50859940--50860007 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
50859930 TTGGCACTTA
* *
50859940 GGTTGAATGTTTTGGCATGTGTTAGGCGT
1 GGTTTAATGTTTTGGCATGTGTTAGGCAT
*
50859969 GGTTTAATGTTTTGGCATGTGTTGGGCAT
1 GGTTTAATGTTTTGGCATGTGTTAGGCAT
*
50859998 GTTTTAATGT
1 GGTTTAATGT
50860008 GTTTTTAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.15, C:0.06, G:0.34, T:0.46
Consensus pattern (29 bp):
GGTTTAATGTTTTGGCATGTGTTAGGCAT
Found at i:50860504 original size:17 final size:17
Alignment explanation
Indices: 50860472--50860504 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
50860462 TTATTAAATG
50860472 AGTAGTTTAATGATGTA
1 AGTAGTTTAATGATGTA
50860489 AGTAGCTTTAAT-ATGT
1 AGTAG-TTTAATGATGT
50860505 GTTGTAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.42
Consensus pattern (17 bp):
AGTAGTTTAATGATGTA
Found at i:50861235 original size:75 final size:75
Alignment explanation
Indices: 50861156--50861399 Score: 391
Period size: 75 Copynumber: 3.2 Consensus size: 75
50861146 TGTTCTAGAG
* **
50861156 TTTCTTCTGTGAATAAAAATGTTGTACTTATTGATGTTCTA-CAATAATAAGGCGTGGGCATGCC
1 TTTCTTCTGTGAACAAAAATGTTGTACTTCCTGATGTTC-AGCAATAATAAGGCGTGGGCATGCC
50861220 TTAATCTTGAA
65 TTAATCTTGAA
* *
50861231 TTTCTTCTGTGAAAAAAAAATGTTGTACTTCCTAATGTTCAGCAATAATAAGGCGTGGGCATGCC
1 TTTCTTCTGTG-AACAAAAATGTTGTACTTCCTGATGTTCAGCAATAATAAGGCGTGGGCATGCC
50861296 TTAATCTTGAA
65 TTAATCTTGAA
*
50861307 TTTTTTCTGTGAACAAAAATGTTGTACTTCCTGATGTTCAGCAATAATAAGGCGTGGGCATGCCT
1 TTTCTTCTGTGAACAAAAATGTTGTACTTCCTGATGTTCAGCAATAATAAGGCGTGGGCATGCCT
*
50861372 TATTCTTGAA
66 TAATCTTGAA
*
50861382 TTTCTTCTATGAACAAAA
1 TTTCTTCTGTGAACAAAA
50861400 CTGTGTTACA
Statistics
Matches: 157, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
75 89 0.57
76 68 0.43
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (75 bp):
TTTCTTCTGTGAACAAAAATGTTGTACTTCCTGATGTTCAGCAATAATAAGGCGTGGGCATGCCT
TAATCTTGAA
Found at i:50861428 original size:75 final size:75
Alignment explanation
Indices: 50861126--50861399 Score: 388
Period size: 75 Copynumber: 3.6 Consensus size: 75
50861116 GAAGTTTAAG
* * * * * * * **
50861126 AATAAGCCGTAGGCACGCCTTGTTCTAGAGTTTCTTCTGTGAATAAAAATGTTGTACTTATTGAT
1 AATAAGGCGTGGGCATGCCTTATTCTTGAATTTCTTCTGTGAACAAAAATGTTGTACTTCCTGAT
50861191 GTTCTA-CAAT
66 GTTC-AGCAAT
* * *
50861201 AATAAGGCGTGGGCATGCCTTAATCTTGAATTTCTTCTGTGAAAAAAAAATGTTGTACTTCCTAA
1 AATAAGGCGTGGGCATGCCTTATTCTTGAATTTCTTCTGTG-AACAAAAATGTTGTACTTCCTGA
50861266 TGTTCAGCAAT
65 TGTTCAGCAAT
* *
50861277 AATAAGGCGTGGGCATGCCTTAATCTTGAATTTTTTCTGTGAACAAAAATGTTGTACTTCCTGAT
1 AATAAGGCGTGGGCATGCCTTATTCTTGAATTTCTTCTGTGAACAAAAATGTTGTACTTCCTGAT
50861342 GTTCAGCAAT
66 GTTCAGCAAT
*
50861352 AATAAGGCGTGGGCATGCCTTATTCTTGAATTTCTTCTATGAACAAAA
1 AATAAGGCGTGGGCATGCCTTATTCTTGAATTTCTTCTGTGAACAAAA
50861400 CTGTGTTACA
Statistics
Matches: 180, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
75 112 0.62
76 68 0.38
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (75 bp):
AATAAGGCGTGGGCATGCCTTATTCTTGAATTTCTTCTGTGAACAAAAATGTTGTACTTCCTGAT
GTTCAGCAAT
Found at i:50863542 original size:42 final size:43
Alignment explanation
Indices: 50863491--50863572 Score: 139
Period size: 42 Copynumber: 1.9 Consensus size: 43
50863481 TCTCATAATG
50863491 ATGAACTCAGACCACAACTC-ATGAGTTCAAATCACATAAATC
1 ATGAACTCAGACCACAACTCAATGAGTTCAAATCACATAAATC
* *
50863533 ATGAACTCAGACCACAACTCAATGAGTTTAGATCACATAA
1 ATGAACTCAGACCACAACTCAATGAGTTCAAATCACATAA
50863573 TTTTCCCTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
42 20 0.54
43 17 0.46
ACGTcount: A:0.43, C:0.24, G:0.11, T:0.22
Consensus pattern (43 bp):
ATGAACTCAGACCACAACTCAATGAGTTCAAATCACATAAATC
Found at i:50863548 original size:22 final size:21
Alignment explanation
Indices: 50863491--50863549 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 21
50863481 TCTCATAATG
*
50863491 ATGAACTCAGACCAC-AACTC
1 ATGAACTCAGACCACAAAATC
** * *
50863511 ATGAGTTCAAATCACATAAATC
1 ATGAACTCAGACCACA-AAATC
50863533 ATGAACTCAGACCACAA
1 ATGAACTCAGACCACAA
50863550 CTCAATGAGT
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
20 11 0.39
21 1 0.04
22 16 0.57
ACGTcount: A:0.44, C:0.27, G:0.10, T:0.19
Consensus pattern (21 bp):
ATGAACTCAGACCACAAAATC
Found at i:50869589 original size:21 final size:20
Alignment explanation
Indices: 50869565--50869604 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
50869555 TATGATCTTT
50869565 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
50869586 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
50869605 ATAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:50869612 original size:20 final size:21
Alignment explanation
Indices: 50869570--50869612 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
50869560 TCTTTAATGA
*
50869570 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
50869591 TTGATGATAG-TTAT-ATAAGT
1 TTGATGATAGATTATGA-AAGT
50869611 TT
1 TT
50869613 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:50871945 original size:43 final size:42
Alignment explanation
Indices: 50871837--50871934 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
50871827 ACATAGGATT
*
50871837 TCGATATGTGATTTCGTGTAAGACCATGTTTGGGACATCGACA
1 TCGATATGTGA-TTCGTGTAAGACCATGTCTGGGACATCGACA
* * *
50871880 TC-ATATATGAGTTCGTGTAAGACCCTGTCTGGGACAGT-GGCA
1 TCGATATGTGA-TTCGTGTAAGACCATGTCTGGGACA-TCGACA
50871922 TCGATATGTGATT
1 TCGATATGTGATT
50871935 ACAGGTAAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
42 37 0.79
43 10 0.21
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
TCGATATGTGATTCGTGTAAGACCATGTCTGGGACATCGACA
Found at i:50879641 original size:30 final size:30
Alignment explanation
Indices: 50879606--50879662 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
50879596 CGAGACTAGA
*
50879606 GGCAAAATCATAATTTTGCAAAGGTTTAGG
1 GGCAAAATCATAATTTTGCAAAAGTTTAGG
** *
50879636 GGCAAAATTGTAATTTTTCAAAAGTTT
1 GGCAAAATCATAATTTTGCAAAAGTTT
50879663 GTGTTAGGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (30 bp):
GGCAAAATCATAATTTTGCAAAAGTTTAGG
Found at i:50880527 original size:25 final size:25
Alignment explanation
Indices: 50880499--50880583 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 25
50880489 AGACCATGCC
50880499 AAGGCATGGCATTGATAAGTTCTAT
1 AAGGCATGGCATTGATAAGTTCTAT
* * * *
50880524 AAGGCAAGGAAATCATG-TAAG-ACCAT
1 AAGGCATGG-CAT--TGATAAGTTCTAT
50880550 GCCAAGGCATGGCATTGATAAGTTCTAT
1 ---AAGGCATGGCATTGATAAGTTCTAT
50880578 AAGGCA
1 AAGGCA
50880584 AGGAAATCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
25 14 0.32
26 7 0.16
27 8 0.18
28 7 0.16
29 8 0.18
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (25 bp):
AAGGCATGGCATTGATAAGTTCTAT
Found at i:50880539 original size:54 final size:54
Alignment explanation
Indices: 50880475--50880736 Score: 341
Period size: 54 Copynumber: 4.9 Consensus size: 54
50880465 TTGGTAAGAG
50880475 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
*
50880529 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * *
50880583 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTAATATAAGGTA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGG-C
** *
50880639 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTTG-TGAGTT-TATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCA-TTGATAAGTTCTATAAGGC
* * * * * *
50880691 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC
50880737 AAAAAGGAAA
Statistics
Matches: 184, Mismatches: 18, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
52 6 0.03
53 38 0.21
54 96 0.52
55 37 0.20
56 7 0.04
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:50882639 original size:3 final size:3
Alignment explanation
Indices: 50882631--50882660 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
50882621 AGTATAGCAA
50882631 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
50882661 CACAACTCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:50887389 original size:37 final size:37
Alignment explanation
Indices: 50887339--50887417 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50887329 TTATTACGAA
* *
50887339 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
50887376 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
50887413 GTCTT
1 GTCTT
50887418 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:50887614 original size:47 final size:47
Alignment explanation
Indices: 50887536--50888058 Score: 875
Period size: 47 Copynumber: 11.1 Consensus size: 47
50887526 CCCTTCGGGA
* * * * * * *
50887536 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50887583 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50887630 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50887677 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50887724 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50887771 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50887818 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50887865 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50887912 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50887961 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50888008 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50888055 CTTA
1 CTTA
50888059 CTATCATTTC
Statistics
Matches: 455, Mismatches: 19, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 409 0.90
49 46 0.10
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50894814 original size:28 final size:28
Alignment explanation
Indices: 50894774--50894837 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
50894764 CGGGAAGTAG
*
50894774 TTGGGCCTGATGGGCCATATGAA-TGTGA
1 TTGGGCCTGATGGGCCATATGAACT-AGA
*
50894802 TTGGGCCTGATGGGCCATGTGAACTAGA
1 TTGGGCCTGATGGGCCATATGAACTAGA
50894830 TTGGGCCT
1 TTGGGCCT
50894838 AAAGGGGCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 32 0.97
29 1 0.03
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACTAGA
Found at i:50895184 original size:27 final size:27
Alignment explanation
Indices: 50895154--50895387 Score: 185
Period size: 27 Copynumber: 8.7 Consensus size: 27
50895144 TAATAAAGAG
*
50895154 AAATTACCGAAATACCCCTGGTTTGTA
1 AAATTATCGAAATACCCCTGGTTTGTA
* * ***
50895181 AAATTACCGAAGTACCCCCAATTTGTA
1 AAATTATCGAAATACCCCTGGTTTGTA
**
50895208 AAATTATCGAAATACCCCCAGTTTGTA
1 AAATTATCGAAATACCCCTGGTTTGTA
* ** *
50895235 AAATTA-CCAAAGTA-CCCTCAATTTATA
1 AAATTATCGAAA-TACCCCT-GGTTTGTA
*
50895262 AAATTATCAAAATA-CCCTCGGTTTGTA
1 AAATTATCGAAATACCCCT-GGTTTGTA
* * *
50895289 AAATTA-CTGAAACACCCCCGATTTGTA
1 AAATTATC-GAAATACCCCTGGTTTGTA
* *
50895316 AAATTATCGAAATA-CCCTTGTAGTGTA
1 AAATTATCGAAATACCCCTGGT-TTGTA
* *
50895343 AAATTATTGAAATACCCCT-G-TAGTA
1 AAATTATCGAAATACCCCTGGTTTGTA
*
50895368 AAATTATTGAAATACCCCTG
1 AAATTATCGAAATACCCCTG
50895388 TAGTGTAAAA
Statistics
Matches: 171, Mismatches: 27, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
25 22 0.13
26 12 0.07
27 125 0.73
28 12 0.07
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTATCGAAATACCCCTGGTTTGTA
Found at i:50895236 original size:54 final size:54
Alignment explanation
Indices: 50895154--50895332 Score: 250
Period size: 54 Copynumber: 3.3 Consensus size: 54
50895144 TAATAAAGAG
* *
50895154 AAATTACCGAAATACCCCTGGTTTGTAAAATTACCGAAGTACCCCCAATTTGTA
1 AAATTATCGAAATACCCCCGGTTTGTAAAATTACCGAAGTACCCCCAATTTGTA
* * * *
50895208 AAATTATCGAAATACCCCCAGTTTGTAAAATTACCAAAGTACCCTCAATTTATA
1 AAATTATCGAAATACCCCCGGTTTGTAAAATTACCGAAGTACCCCCAATTTGTA
* * * ** *
50895262 AAATTATCAAAATACCCTCGGTTTGTAAAATTACTGAAACACCCCCGATTTGTA
1 AAATTATCGAAATACCCCCGGTTTGTAAAATTACCGAAGTACCCCCAATTTGTA
50895316 AAATTATCGAAATACCC
1 AAATTATCGAAATACCC
50895333 TTGTAGTGTA
Statistics
Matches: 108, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 108 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (54 bp):
AAATTATCGAAATACCCCCGGTTTGTAAAATTACCGAAGTACCCCCAATTTGTA
Found at i:50895333 original size:54 final size:54
Alignment explanation
Indices: 50895154--50895384 Score: 240
Period size: 54 Copynumber: 4.3 Consensus size: 54
50895144 TAATAAAGAG
* * *
50895154 AAATTACCGAAATACCC-CTGGTTTGTAAAATTACCGAAGTACCCCCAATTTGTA
1 AAATTATCGAAATACCCTC-GGTTTGTAAAATTACTGAAATACCCCCAATTTGTA
* * * * *
50895208 AAATTATCGAAATACCCCCAGTTTGTAAAATTAC-CAAAGTACCCTCAATTTATA
1 AAATTATCGAAATACCCTCGGTTTGTAAAATTACTGAAA-TACCCCCAATTTGTA
* * *
50895262 AAATTATCAAAATACCCTCGGTTTGTAAAATTACTGAAACACCCCCGATTTGTA
1 AAATTATCGAAATACCCTCGGTTTGTAAAATTACTGAAATACCCCCAATTTGTA
* * * *
50895316 AAATTATCGAAATACCCT-TGTAGTGTAAAATTATTGAAATA-CCCC--TGTAGTA
1 AAATTATCGAAATACCCTCGGT-TTGTAAAATTACTGAAATACCCCCAAT-TTGTA
*
50895368 AAATTATTGAAATACCC
1 AAATTATCGAAATACCC
50895385 CTGTAGTGTA
Statistics
Matches: 151, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
51 1 0.01
52 20 0.13
53 8 0.05
54 118 0.78
55 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
AAATTATCGAAATACCCTCGGTTTGTAAAATTACTGAAATACCCCCAATTTGTA
Found at i:50895875 original size:11 final size:11
Alignment explanation
Indices: 50895859--50895884 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50895849 ATTGCATGTA
50895859 TGATATTATTG
1 TGATATTATTG
50895870 TGATATTATTG
1 TGATATTATTG
50895881 TGAT
1 TGAT
50895885 GTAGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:50901500 original size:28 final size:28
Alignment explanation
Indices: 50901405--50901511 Score: 112
Period size: 27 Copynumber: 3.9 Consensus size: 28
50901395 CTTCCAGAAT
* * * *
50901405 AGATA-TTGTGACAGAGTCACCAGATAC
1 AGATATTTGTGGCATAGCCACCAGAAAC
* *
50901432 AGATA-TTGTGGCAGAGCCACCAG-AAT
1 AGATATTTGTGGCATAGCCACCAGAAAC
*
50901458 AGATATTTCTGGCATAGCCACCAGAAAC
1 AGATATTTGTGGCATAGCCACCAGAAAC
* *
50901486 AGGTATTTGTGGCATAGCCTCCAGAA
1 AGATATTTGTGGCATAGCCACCAGAA
50901512 CGCTTCCTCC
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.09
27 37 0.54
28 25 0.37
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (28 bp):
AGATATTTGTGGCATAGCCACCAGAAAC
Found at i:50908527 original size:36 final size:36
Alignment explanation
Indices: 50908487--50908561 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
50908477 ATTAGCCCAT
50908487 TTATGTGTTTTTGAATAAATTTGATTGAATATGAGA
1 TTATGTGTTTTTGAATAAATTTGATTGAATATGAGA
*
50908523 TTATGTGTTTTTGGATAAATTTGATTGAATATGAGA
1 TTATGTGTTTTTGAATAAATTTGATTGAATATGAGA
50908559 TTA
1 TTA
50908562 AATAAGTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (36 bp):
TTATGTGTTTTTGAATAAATTTGATTGAATATGAGA
Found at i:50918986 original size:46 final size:46
Alignment explanation
Indices: 50918936--50919111 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
50918926 TGATTGAGCA
* *
50918936 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * *
50918982 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAT-CTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
*
50919029 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
50919075 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50919112 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 3 0.03
46 68 0.64
47 35 0.33
48 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:50919092 original size:93 final size:93
Alignment explanation
Indices: 50918933--50919104 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
50918923 GGATGATTGA
* *
50918933 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
50918998 TGAGTCCGAGTTCGTGAGATGTATCTAG
66 TGAGTCCGAGTTCGTGAGATGTATCTAG
* *
50919026 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
50919090 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
50919105 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTATCTAG
Found at i:50926247 original size:37 final size:37
Alignment explanation
Indices: 50926197--50926275 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
50926187 TTATTACGAA
* *
50926197 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
* *
50926234 GTCTTACCCGGACAAAATTCCCACATGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
50926271 GTCTT
1 GTCTT
50926276 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:50926472 original size:47 final size:47
Alignment explanation
Indices: 50926394--50926585 Score: 276
Period size: 47 Copynumber: 4.1 Consensus size: 47
50926384 CCCTTCGGGA
* * * * ** * *
50926394 CTTATCACATTTATGCACTTTCACATCCATCACGTTTGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
50926441 CCCGTCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50926488 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50926535 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50926582 CTTA
1 CTTA
50926586 CTATCATTTC
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50930042 original size:40 final size:40
Alignment explanation
Indices: 50929982--50930098 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
50929972 CGAATACACG
* * * * *
50929982 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
50930022 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
50930062 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
50930099 TTAGTAACTC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:50930123 original size:40 final size:40
Alignment explanation
Indices: 50929995--50930172 Score: 168
Period size: 40 Copynumber: 4.5 Consensus size: 40
50929985 CCAGCATGAT
* * *
50929995 TGCTCTTCGGGATTTAGCACGGATATA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
50930035 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
50930075 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* *
50930116 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAA
1 TGCTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAA
*
50930156 AGC-CTTCGGGACTTAGC
1 TGCTCTTCGGGACTTAGC
50930173 TCAGACATCA
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.81
41 19 0.16
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAA
Found at i:50930123 original size:80 final size:80
Alignment explanation
Indices: 50929982--50930139 Score: 201
Period size: 80 Copynumber: 2.0 Consensus size: 80
50929972 CGAATACACG
* * * **
50929982 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCATGAATGCTCTTCGGAA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAA
50930047 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
* * * *
50930062 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATA-TAACTAGCACCAATGCTCTTCGGA
* *
50930126 TCTTAGTCCGGATA
65 ACTTAGCCCGGATA
50930140 TGGTCACTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 54 0.82
81 12 0.18
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (80 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAA
CTTAGCCCGGATACA
Found at i:50930522 original size:29 final size:29
Alignment explanation
Indices: 50930483--50930561 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
50930473 CTTAATAATC
*
50930483 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
50930513 AACTCGCACACTTAGTGCCGTGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
50930542 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50930562 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:50930591 original size:43 final size:43
Alignment explanation
Indices: 50930543--50930645 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
50930533 TGCATTTCAA
50930543 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
50930586 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
50930629 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
50930646 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:50932549 original size:37 final size:37
Alignment explanation
Indices: 50932499--50932577 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50932489 TTATTACGAA
* *
50932499 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
50932536 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
50932573 GTCTT
1 GTCTT
50932578 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:50932774 original size:47 final size:47
Alignment explanation
Indices: 50932696--50932887 Score: 294
Period size: 47 Copynumber: 4.1 Consensus size: 47
50932686 CCCTTCGGGA
* * * * * * *
50932696 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
50932743 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50932790 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50932837 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50932884 CTTA
1 CTTA
50932888 CTATCATTTC
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50936302 original size:43 final size:42
Alignment explanation
Indices: 50936205--50936309 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 42
50936195 GATTTGAGAT
*
50936205 TTACATGTAAGACCATGTCTGGGACATTGGCATCGTACATGA
1 TTACATGTAAGACCATGTCTGGGACAGTGGCATCGTACATGA
*** * * * **
50936247 TTTTGTGTAAGACCCTGTTTGGGACAGTGGGATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGTGGCATCG-TACATGA
*
50936290 TTACATGTAAGACCACGTCT
1 TTACATGTAAGACCATGTCT
50936310 AAGACGTTGG
Statistics
Matches: 47, Mismatches: 15, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
42 28 0.60
43 19 0.40
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACAGTGGCATCGTACATGA
Found at i:50939833 original size:40 final size:40
Alignment explanation
Indices: 50939752--50940009 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
50939742 CAACCAAGTA
* * *
50939752 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
50939791 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50939831 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50939871 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
50939911 CCTTTGGGACTTAGCCCGGATATAGTAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
50939951 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
50939991 CCGTCGGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50940010 TTATCATCCG
Statistics
Matches: 202, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 15 0.07
40 187 0.93
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50942134 original size:37 final size:37
Alignment explanation
Indices: 50942079--50942181 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
50942069 CGAATAGTCC
* * * *
50942079 CCACTCGTAGTTAGCGGGTCTCACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
50942116 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50942153 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50942182 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50942380 original size:48 final size:48
Alignment explanation
Indices: 50942322--50942611 Score: 501
Period size: 48 Copynumber: 6.0 Consensus size: 48
50942312 ATATACACAC
*
50942322 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
50942370 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
50942418 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
50942466 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
50942514 ATCTTATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** * *
50942562 ATCTCATTTATATTTCAC-CTTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACAT
50942610 AT
1 AT
50942612 TTGTCTTGTA
Statistics
Matches: 232, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 1 0.00
48 231 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:50946290 original size:40 final size:40
Alignment explanation
Indices: 50946244--50946569 Score: 492
Period size: 40 Copynumber: 8.2 Consensus size: 40
50946234 CCGAATACAC
* * * *
50946244 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * *
50946284 AACACCAGCACGAGTGCTCTTCGGGACTTAACCCTGG-TAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCC-GGATAT
* * * *
50946324 AACTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGGTAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
50946364 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
50946404 ATCATTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
50946444 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
50946484 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
50946524 ATCACTAGCACGAATGCTATTCGGGACTTAGCCCAGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
50946564 ATCACT
1 ATCACT
50946570 CTCAATTCTC
Statistics
Matches: 264, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 260 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:50947906 original size:37 final size:37
Alignment explanation
Indices: 50947851--50947953 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
50947841 CGAATAGTCC
* * * *
50947851 CCACTCGTAGTTAGCGGGTCTCACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
50947888 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50947925 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50947954 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50957428 original size:40 final size:40
Alignment explanation
Indices: 50957347--50957522 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
50957337 CAACCAAGTA
* * *
50957347 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
50957386 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50957426 CCTTCGGGACTTAGCCCGGATATAGTAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
50957465 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
50957505 CCGTCGGG-CTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50957523 TTATCATCCG
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
38 1 0.01
39 59 0.47
40 65 0.52
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50957478 original size:79 final size:80
Alignment explanation
Indices: 50957347--50957522 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 80
50957337 CAACCAAGTA
* * *
50957347 CCTTCGGGATTTAG-CCGGACATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-TTATA
1 CCTTCGGGACTTAGCCCGGACATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
*
50957410 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
* *
50957426 CCTTCGGGACTTAGCCCGGATATAG-TAACT-GCACAAATGCCTTCGGGGCTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGACATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
*
50957489 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
*
50957505 CCGTCGGG-CTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50957523 TTATCATCCG
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
78 10 0.12
79 63 0.73
80 13 0.15
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGACATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTAGCACAAATG
Found at i:50959680 original size:27 final size:27
Alignment explanation
Indices: 50959650--50959827 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
50959640 ATATTGAGCC
* *
50959650 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
50959677 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50959704 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
50959732 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
50959759 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
50959786 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
50959813 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
50959828 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:50959789 original size:82 final size:81
Alignment explanation
Indices: 50959671--50959826 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
50959661 TGCTATATAA
* * * *
50959671 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
50959736 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50959753 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
50959817 CCCTTAGTGC
65 CACTTAGTGC
50959827 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50973274 original size:26 final size:26
Alignment explanation
Indices: 50973245--50973297 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
50973235 GAGAAAAGAA
50973245 AGAATAAGTTGCACAAGAAGTCGGCT
1 AGAATAAGTTGCACAAGAAGTCGGCT
50973271 AGAATAAGTTGCACAAGAAGTCGGCT
1 AGAATAAGTTGCACAAGAAGTCGGCT
50973297 A
1 A
50973298 ACAATTATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (26 bp):
AGAATAAGTTGCACAAGAAGTCGGCT
Found at i:50973352 original size:16 final size:17
Alignment explanation
Indices: 50973331--50973369 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
50973321 CCAAAATAGC
* *
50973331 ACAAAAAGCAGAGAAG-
1 ACAAAAAGAAAAGAAGA
50973347 ACAAAAAGAAAAGAAGA
1 ACAAAAAGAAAAGAAGA
50973364 ACAAAA
1 ACAAAA
50973370 CAAATACCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.72, C:0.10, G:0.18, T:0.00
Consensus pattern (17 bp):
ACAAAAAGAAAAGAAGA
Found at i:50976707 original size:40 final size:40
Alignment explanation
Indices: 50976624--50976866 Score: 256
Period size: 40 Copynumber: 6.1 Consensus size: 40
50976614 ATACTATTTG
* * * *
50976624 ATTCAGGGTTACCAAAGTATAAATA-GGGCAC-TATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
*
50976662 ATTCAGGGGTATCGAAGTACAAACAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * **
50976702 ATTCAGGAGTACCAAAGTACAAACAAGGGCATATATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
** * * * *
50976742 ATTCAAAGGTGCCAAAGTACAAATAGGGGCACATATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * * *
50976782 ACTCAGGGGTACCGAAGTACAAATACGGGCCCGTATGTAC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * *
50976822 ATTCAGGGGTTCTGAAGTACAAAAAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
50976862 ATTCA
1 ATTCA
50976867 ACAATAATTA
Statistics
Matches: 169, Mismatches: 34, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
38 20 0.12
39 6 0.04
40 143 0.85
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (40 bp):
ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
Found at i:50976708 original size:20 final size:20
Alignment explanation
Indices: 50976649--50976708 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
50976639 AGTATAAATA
50976649 GGGCAC-TATGTGCATTCAG
1 GGGCACGTATGTGCATTCAG
* * * **
50976668 GGGTATCG-AAGTACAAACAG
1 GGGCA-CGTATGTGCATTCAG
50976688 GGGCACGTATGTGCATTCAG
1 GGGCACGTATGTGCATTCAG
50976708 G
1 G
50976709 AGTACCAAAG
Statistics
Matches: 28, Mismatches: 10, Indels: 5
0.65 0.23 0.12
Matches are distributed among these distances:
19 6 0.21
20 22 0.79
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (20 bp):
GGGCACGTATGTGCATTCAG
Found at i:50976825 original size:120 final size:118
Alignment explanation
Indices: 50976635--50976867 Score: 315
Period size: 120 Copynumber: 2.0 Consensus size: 118
50976625 TTCAGGGTTA
* * * *
50976635 CCAAAGTATAAATAGGGCACTATGTGCATTCAGGGGTATCGAAGTACAAACAGGGGCACGTATGT
1 CCAAAGTACAAATAGGGCACTATGTGCACTCAGGGGTACCGAAGTACAAACACGGGCACGTATGT
* *
50976700 GCATTCAGGAGTACCAAAGTACAAACAA-GGGCATATATGTGCATTCAAAGGTG
66 ACATTCAGGAGTACCAAAGTACAAA-AAGGGGCACATATGTGCATTCAAAGGTG
* *
50976753 CCAAAGTACAAATAGGGGCACATATGTGCACTCAGGGGTACCGAAGTACAAATACGGGCCCGTAT
1 CCAAAGTACAAATA-GGGCAC-TATGTGCACTCAGGGGTACCGAAGTACAAACACGGGCACGTAT
* * ** *
50976818 GTACATTCAGGGGTTCTGAAGTACAAAAAGGGGCACGTATGTGCATTCAA
64 GTACATTCAGGAGTACCAAAGTACAAAAAGGGGCACATATGTGCATTCAA
50976868 CAATAATTAT
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
118 13 0.13
119 8 0.08
120 78 0.79
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (118 bp):
CCAAAGTACAAATAGGGCACTATGTGCACTCAGGGGTACCGAAGTACAAACACGGGCACGTATGT
ACATTCAGGAGTACCAAAGTACAAAAAGGGGCACATATGTGCATTCAAAGGTG
Found at i:50981352 original size:36 final size:37
Alignment explanation
Indices: 50981280--50981357 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
50981270 TTATTACGAA
* *
50981280 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
*
50981317 GTCTTACCCGGACA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
50981353 GTCTT
1 GTCTT
50981358 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 24 0.63
37 14 0.37
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
Found at i:50981600 original size:47 final size:47
Alignment explanation
Indices: 50981475--50981951 Score: 771
Period size: 47 Copynumber: 10.1 Consensus size: 47
50981465 CCCTTCGGGA
* * * * * *
50981475 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
50981522 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50981571 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50981618 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50981667 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50981712 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50981758 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50981805 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50981852 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50981899 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50981948 CTTA
1 CTTA
50981952 CTATCATTTC
Statistics
Matches: 405, Mismatches: 16, Indels: 16
0.93 0.04 0.04
Matches are distributed among these distances:
45 45 0.11
46 46 0.11
47 189 0.47
49 125 0.31
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50981639 original size:96 final size:96
Alignment explanation
Indices: 50981475--50981951 Score: 797
Period size: 96 Copynumber: 5.0 Consensus size: 96
50981465 CCCTTCGGGA
* * * * * * * *
50981475 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
50981540 ACTTCCACATTCATCACATCGGCCATTAGAC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
50981571 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50981636 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
50981667 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50981728 ACTTTCACATTCATCACATCGGCCATTAGG-
66 ACTTTCACATTCATCACATCGGCCATTAGGC
50981758 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50981821 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
50981852 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50981917 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
50981948 CTTA
1 CTTA
50981952 CTATCATTTC
Statistics
Matches: 364, Mismatches: 12, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
91 8 0.02
92 38 0.10
93 83 0.23
94 98 0.27
96 137 0.38
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50981676 original size:22 final size:22
Alignment explanation
Indices: 50981648--50981721 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
50981638 TTTCACATTC
50981648 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** * *
50981670 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCCTT
50981692 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
50981715 ATCACAT
1 ATCACAT
50981722 ATATACACTT
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:50990119 original size:28 final size:28
Alignment explanation
Indices: 50990056--50990178 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
50990046 ATATTAAGTC
*
50990056 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50990083 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
50990111 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50990139 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50990168 CGCACACTTAG
1 CGCACACTTAG
50990179 CGCCAATCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.25
28 51 0.57
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50997219 original size:39 final size:40
Alignment explanation
Indices: 50996980--50997201 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
50996970 CAGATGATAA
* * * *
50996980 CCGGGCTAAGTCCCGATGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
50997020 CCGGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
50997060 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
50997100 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50997140 CCGGGCTAAGTCCCGAAGGCATTGGTGCGA-TTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50997179 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
50997202 GAGGAAGTAG
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 31 0.19
40 132 0.81
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51005172 original size:40 final size:40
Alignment explanation
Indices: 51005117--51005413 Score: 413
Period size: 40 Copynumber: 7.5 Consensus size: 40
51005107 CGGATGATAA
* * *
51005117 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
51005157 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51005197 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51005237 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51005277 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51005317 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
51005357 CCGGGCTATGTCCCGAAGGCA-TTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
51005396 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51005414 TACTTGGCTT
Statistics
Matches: 234, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 15 0.06
39 15 0.06
40 204 0.87
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51010440 original size:24 final size:24
Alignment explanation
Indices: 51010413--51010460 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
51010403 CCCACTTTTT
51010413 CGGGTTTTCAGCCTTT-CAGCTTTC
1 CGGGTTTTCAGCCTTTGCAG-TTTC
51010437 CGGGTTTTCAGCCTTTGCAGTTTC
1 CGGGTTTTCAGCCTTTGCAGTTTC
51010461 AAATCCAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.08, C:0.27, G:0.23, T:0.42
Consensus pattern (24 bp):
CGGGTTTTCAGCCTTTGCAGTTTC
Found at i:51012246 original size:46 final size:46
Alignment explanation
Indices: 51012193--51012325 Score: 160
Period size: 46 Copynumber: 2.9 Consensus size: 46
51012183 GGATGTTTGC
* *
51012193 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA-
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-ACGAG
* *** * *
51012239 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGAACGAG
*
51012286 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51012326 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
46 36 0.51
47 35 0.49
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAACGAG
Found at i:51016467 original size:15 final size:15
Alignment explanation
Indices: 51016449--51016489 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
51016439 TATATCTGTG
51016449 AAATTTTCGTGTTTT
1 AAATTTTCGTGTTTT
51016464 AAATTTTCGTGTTTT
1 AAATTTTCGTGTTTT
51016479 AAATTTATCGT
1 AAATTT-TCGT
51016490 TTGAGTGTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 21 0.84
16 4 0.16
ACGTcount: A:0.24, C:0.07, G:0.12, T:0.56
Consensus pattern (15 bp):
AAATTTTCGTGTTTT
Found at i:51017685 original size:56 final size:56
Alignment explanation
Indices: 51017622--51017732 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 56
51017612 ACCATGCCAT
** *
51017622 CGATATATGTGTGTGAGTAAGACCACGTT-TAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCAAGTAAGACCA-GTTCTAATACGTTGACATCGATATGTGATTC
* *
51017678 CGATATATGTGTGCAAGTAAGACCAGTTCTAGTATGTTGACATCGATATGTGATT
1 CGATATATGTGTGCAAGTAAGACCAGTTCTAATACGTTGACATCGATATGTGATT
51017733 ACATGTAAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 3 0.06
56 46 0.94
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCAAGTAAGACCAGTTCTAATACGTTGACATCGATATGTGATTC
Found at i:51018412 original size:6 final size:6
Alignment explanation
Indices: 51018401--51018430 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
51018391 TATGGTTATG
*
51018401 TTTGGT TGTGGT TTTGGT TTTGGT TTTGGT
1 TTTGGT TTTGGT TTTGGT TTTGGT TTTGGT
51018431 GATTCGGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.37, T:0.63
Consensus pattern (6 bp):
TTTGGT
Found at i:51020668 original size:40 final size:39
Alignment explanation
Indices: 51020581--51020703 Score: 131
Period size: 39 Copynumber: 3.1 Consensus size: 39
51020571 ATACTAGTTG
* * * * * *
51020581 ATTCAGGGTTACCAAAGTATAAATAGGGCACGTATGTGC
1 ATTCAGGGGTATCGAAGTACAAACAGGGCACGTATATGC
* *
51020620 GTTCAGGGGTA-CTGAAGTACAAACAAGGGCACGTATATGT
1 ATTCAGGGGTATC-GAAGTACAAAC-AGGGCACGTATATGC
* *
51020660 ATTTAGGGGTATCGAAGTACAAACAGGGCACGTATGTGC
1 ATTCAGGGGTATCGAAGTACAAACAGGGCACGTATATGC
51020699 ATTCA
1 ATTCA
51020704 AAAACAATTA
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 34 0.49
40 33 0.48
41 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (39 bp):
ATTCAGGGGTATCGAAGTACAAACAGGGCACGTATATGC
Found at i:51023072 original size:25 final size:25
Alignment explanation
Indices: 51023026--51023076 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
51023016 CCCTTATAAT
** *
51023026 GTCAAAATGACCATTTTGCCCCTAG
1 GTCAAAATGACCATGATACCCCTAG
51023051 GTCAAAATGACCATGATACCCCTAG
1 GTCAAAATGACCATGATACCCCTAG
51023076 G
1 G
51023077 GATATGCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (25 bp):
GTCAAAATGACCATGATACCCCTAG
Found at i:51025046 original size:47 final size:47
Alignment explanation
Indices: 51024993--51025418 Score: 638
Period size: 47 Copynumber: 9.1 Consensus size: 47
51024983 TTAGGATTTT
* ** * * *
51024993 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51025040 ATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51025087 ATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51025134 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51025181 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51025228 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51025275 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51025322 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
51025369 ATGTGATGAATGTGGAA-GTGTATATATGTGATAAAGCAGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
51025416 ATG
1 ATG
51025419 CGAAATGTGC
Statistics
Matches: 355, Mismatches: 23, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 352 0.99
48 3 0.01
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51025328 original size:22 final size:22
Alignment explanation
Indices: 51025300--51025375 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
51025290 ACATGCATAT
51025300 ATGTGATAAGGTCGAATGGCCA
1 ATGTGATAAGGTCGAATGGCCA
* *
51025322 ATGTGATGAATGT-GAACAT-GCATA
1 ATGTGAT-AAGGTCG-A-ATGGC-CA
51025346 TATGTGATAAGG-CAGAATGGCCA
1 -ATGTGATAAGGTC-GAATGGCCA
51025369 ATGTGAT
1 ATGTGAT
51025376 GAATGTGGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGTCGAATGGCCA
Found at i:51025450 original size:46 final size:46
Alignment explanation
Indices: 51025400--51025574 Score: 244
Period size: 46 Copynumber: 3.8 Consensus size: 46
51025390 ATATATGTGA
* *
51025400 TAAAGCAGAATGGCTAATGCGAAATGTGCATGAGATGGATATGAGG
1 TAAAGCAGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* *
51025446 TAAAGCCGAATGGCTAATGCAAAACGTGTATGAGATGGATATGAGG
1 TAAAGCAGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* *
51025492 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGG
1 TAAAGCAGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* * **
51025538 TAAAGCCA-AATGGCTAATGTGAGATATGTATGAGATG
1 TAAAG-CAGAATGGCTAATGCGAAACGTGTATGAGATG
51025575 TGTATATATA
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
46 116 0.99
47 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.31, T:0.23
Consensus pattern (46 bp):
TAAAGCAGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
Found at i:51027116 original size:40 final size:40
Alignment explanation
Indices: 51027061--51027435 Score: 651
Period size: 40 Copynumber: 9.4 Consensus size: 40
51027051 TGAGAGTTAT
*
51027061 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
51027101 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
51027141 ATATATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
51027181 ATATATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
51027221 ATATATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
51027261 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* * *
51027301 ATGTATCCGGGCTACGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
51027341 ATATATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
51027381 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
51027421 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
51027436 ACCTCGAAGG
Statistics
Matches: 320, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 320 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:51027217 original size:23 final size:23
Alignment explanation
Indices: 51027151--51027257 Score: 76
Period size: 23 Copynumber: 5.2 Consensus size: 23
51027141 ATATATCCAG
51027151 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
* * *
51027174 GCT-AG-T--G-ATA-TATTCGG
1 GCTAAGTTCCGAAGAGCATTCGT
51027191 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
* * *
51027214 GCT-AG-T--G-ATA-TATTCGG
1 GCTAAGTTCCGAAGAGCATTCGT
51027231 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
51027254 GCTA
1 GCTA
51027258 GTGATATATC
Statistics
Matches: 60, Mismatches: 12, Indels: 24
0.62 0.12 0.25
Matches are distributed among these distances:
17 16 0.27
18 8 0.13
19 4 0.07
21 4 0.07
22 8 0.13
23 20 0.33
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (23 bp):
GCTAAGTTCCGAAGAGCATTCGT
Found at i:51027553 original size:57 final size:57
Alignment explanation
Indices: 51027463--51027594 Score: 169
Period size: 57 Copynumber: 2.3 Consensus size: 57
51027453 GCTGGAATTA
* *
51027463 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAG-TAG
1 TGAGGCACTGTGTGTGCGAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTTAG
* * * * *
51027519 TTGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCGCTATGTGTGCGAAATCAGTTAG
1 -TGAGGCACTGTGTGTGCGAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTTAG
*
51027577 TG-GGCACTGTGTATGCGA
1 TGAGGCACTGTGTGTGCGA
51027595 AGTGTGTTTC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 14 0.22
57 48 0.74
58 3 0.05
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCGAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTTAG
Found at i:51028103 original size:17 final size:17
Alignment explanation
Indices: 51028081--51028114 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51028071 AGTTGATTTT
51028081 CCTTTGGAAATAAGTTA
1 CCTTTGGAAATAAGTTA
51028098 CCTTTGGAAATAAGTTA
1 CCTTTGGAAATAAGTTA
51028115 AGTTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (17 bp):
CCTTTGGAAATAAGTTA
Found at i:51028824 original size:386 final size:386
Alignment explanation
Indices: 51028111--51029270 Score: 2320
Period size: 386 Copynumber: 3.0 Consensus size: 386
51028101 TTGGAAATAA
51028111 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
1 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
51028176 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
66 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
51028241 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
131 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
51028306 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
196 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
51028371 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
261 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
51028436 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
326 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
51028497 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
1 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
51028562 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
66 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
51028627 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
131 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
51028692 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
196 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
51028757 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
261 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
51028822 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
326 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
51028883 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
1 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
51028948 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
66 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
51029013 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
131 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
51029078 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
196 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
51029143 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
261 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
51029208 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
326 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
51029269 GT
1 GT
51029271 GTGGGGTTCA
Statistics
Matches: 774, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
386 774 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.36
Consensus pattern (386 bp):
GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
Found at i:51031437 original size:47 final size:47
Alignment explanation
Indices: 51031384--51031809 Score: 629
Period size: 47 Copynumber: 9.1 Consensus size: 47
51031374 TTAGGATTTT
* ** * * *
51031384 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51031431 ATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51031478 ATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51031525 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51031572 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51031619 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51031666 ATGTGATGAATGTGAATATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51031713 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
51031760 ATGTGATGAATGTGGAA-GTGTATATATGTGATAAAGCAGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
51031807 ATG
1 ATG
51031810 CGAAATGTGC
Statistics
Matches: 353, Mismatches: 25, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
47 350 0.99
48 3 0.01
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51031682 original size:22 final size:22
Alignment explanation
Indices: 51031657--51031728 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
51031647 TGATAAGGCC
51031657 GAATGACCAATGTGATGAATGT
1 GAATGACCAATGTGATGAATGT
* *
51031679 GAAT-ATGCATATATGTGAT-AAGGT
1 GAATGA--C-CA-ATGTGATGAATGT
*
51031703 CGAATGGCCAATGTGATGAATGT
1 -GAATGACCAATGTGATGAATGT
51031726 GAA
1 GAA
51031729 CATGCATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
21 1 0.03
22 14 0.37
23 6 0.16
24 6 0.16
25 11 0.29
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (22 bp):
GAATGACCAATGTGATGAATGT
Found at i:51031848 original size:46 final size:46
Alignment explanation
Indices: 51031791--51031965 Score: 251
Period size: 46 Copynumber: 3.8 Consensus size: 46
51031781 ATATATGTGA
* * *
51031791 TAAAGCAGAATGGCTAATGCGAAATGTGCATGAGATGGATATGAGG
1 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* *
51031837 TACAGCCGAATGGCTAATGCAAAACGTGTATGAGATGGATATGAGG
1 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
*
51031883 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGG
1 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* * * **
51031929 TAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
51031966 TGTATATATA
Statistics
Matches: 116, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 116 1.00
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.23
Consensus pattern (46 bp):
TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
Found at i:51033676 original size:40 final size:40
Alignment explanation
Indices: 51033450--51033738 Score: 518
Period size: 39 Copynumber: 7.4 Consensus size: 40
51033440 TGAGAGTTAT
*
51033450 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT-
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
51033489 ATATATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
51033528 ATATAT-C-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
51033566 ATATATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
51033605 ATGTATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
51033644 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
51033684 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
51033724 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
51033739 ACCTCGAAGG
Statistics
Matches: 242, Mismatches: 3, Indels: 9
0.95 0.01 0.04
Matches are distributed among these distances:
37 7 0.03
38 51 0.21
39 99 0.41
40 85 0.35
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:51033856 original size:57 final size:57
Alignment explanation
Indices: 51033766--51033897 Score: 169
Period size: 57 Copynumber: 2.3 Consensus size: 57
51033756 GCTGGAATTA
* *
51033766 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAG-TAG
1 TGAGGCACTGTGTGTGCGAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTTAG
* * * * *
51033822 TTGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCGCTATGTGTGCGAAATCAGTTAG
1 -TGAGGCACTGTGTGTGCGAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTTAG
*
51033880 TG-GGCACTGTGTATGCGA
1 TGAGGCACTGTGTGTGCGA
51033898 AGTGTGTTTC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 14 0.22
57 48 0.74
58 3 0.05
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCGAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTTAG
Found at i:51034406 original size:17 final size:17
Alignment explanation
Indices: 51034384--51034417 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51034374 AGTTTATTTT
51034384 CCTTTGGAAATAAGTTA
1 CCTTTGGAAATAAGTTA
51034401 CCTTTGGAAATAAGTTA
1 CCTTTGGAAATAAGTTA
51034418 AGTTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (17 bp):
CCTTTGGAAATAAGTTA
Found at i:51037755 original size:47 final size:47
Alignment explanation
Indices: 51037696--51038121 Score: 629
Period size: 47 Copynumber: 9.1 Consensus size: 47
51037686 TTAGGATTTT
* ** * * *
51037696 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51037743 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51037790 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51037837 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51037884 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
51037931 ATGTGATGAATGTGAACATGCATATGTGTGATAACGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51037978 ATGTGATGAATGTGAATATACATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51038025 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
51038072 ATATGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
51038119 ATG
1 ATG
51038122 CGAAATGTGT
Statistics
Matches: 352, Mismatches: 26, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
47 349 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51037843 original size:22 final size:22
Alignment explanation
Indices: 51037816--51037937 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
51037806 CATGCATATG
51037816 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
51037838 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
51037861 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* *
51037885 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
51037908 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
51037932 TGTGAT
1 TGTGAT
51037938 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 24 0.32
23 16 0.22
24 16 0.22
25 18 0.24
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:51038199 original size:91 final size:92
Alignment explanation
Indices: 51038095--51038276 Score: 276
Period size: 91 Copynumber: 2.0 Consensus size: 92
51038085 GGAAGTGTAT
* * *
51038095 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGG-AAAGCCGAAT
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAAT
*
51038159 GGCTAATGCGAAACGTGTATGAGATGG
66 GGCTAATGCGAAACATGTATGAGATGG
* *
51038186 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGGGATGGATATGTGGTAAAGCCAAAT
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAAT
* * *
51038251 GGCTAATGTGAGATATGTATGAGATG
66 GGCTAATGCGAAACATGTATGAGATG
51038277 TGTATATATA
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
91 50 0.62
92 31 0.38
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.24
Consensus pattern (92 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAAT
GGCTAATGCGAAACATGTATGAGATGG
Found at i:51038216 original size:46 final size:46
Alignment explanation
Indices: 51038095--51038276 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
51038085 GGAAGTGTAT
* *
51038095 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
51038141 ATATGAGG-AAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
51038186 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGGGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
51038232 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
51038277 TGTATATATA
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 44 0.35
46 81 0.65
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:51042635 original size:27 final size:27
Alignment explanation
Indices: 51042587--51042648 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
51042577 GTGTACCTGG
* *
51042587 GCCCCTAATCGATAAAATGACTATTAT
1 GCCCCTATTTGATAAAATGACTATTAT
* *
51042614 GCCTCTATTTGATAAAATGACTGTTAT
1 GCCCCTATTTGATAAAATGACTATTAT
51042641 GCCCCTAT
1 GCCCCTAT
51042649 GAGATATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (27 bp):
GCCCCTATTTGATAAAATGACTATTAT
Found at i:51042654 original size:27 final size:27
Alignment explanation
Indices: 51042597--51042654 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
51042587 GCCCCTAATC
* **
51042597 GATAAAATGACTATTATGCCTCTATTT
1 GATAAAATGACTATTATGCCCCTATGA
*
51042624 GATAAAATGACTGTTATGCCCCTATGA
1 GATAAAATGACTATTATGCCCCTATGA
51042651 GATA
1 GATA
51042655 TATGATCATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTATGA
Found at i:51043290 original size:18 final size:19
Alignment explanation
Indices: 51043259--51043296 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
51043249 AGGCCTCTTT
*
51043259 GGATTTTATTTTTAATTTG
1 GGATTTTATATTTAATTTG
*
51043278 GGATTTTA-ATTTACTTTG
1 GGATTTTATATTTAATTTG
51043296 G
1 G
51043297 ATATAACTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.21, C:0.03, G:0.18, T:0.58
Consensus pattern (19 bp):
GGATTTTATATTTAATTTG
Found at i:51047358 original size:63 final size:62
Alignment explanation
Indices: 51047113--51047360 Score: 178
Period size: 68 Copynumber: 3.8 Consensus size: 62
51047103 GATGGTATGT
** * * * * *
51047113 AGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACGAGACATTATGA
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTG-ACAAGAGAGCTACGAG--A-TA-AA
51047178 TG
61 TG
* * * * * *
51047180 TAACTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATG
1 -AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGT-GACAAGAGAGCTACGAGATAAATG
* * *
51047244 TAGCTAGGTTACATGCGTGGTTCCTGGTGAAG-G-ACACCATGTGGACAAGAGAGCTACGAGATA
1 -AGCTAGGTCACATGGGTGG-TAC---T-AAGTGTACACCATGT-GACAAGAGAGCTACGAGATA
51047307 AACTG
59 AA-TG
*
51047312 -GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTG-ACAAGAGAGC
51047361 CAAAATTATG
Statistics
Matches: 144, Mismatches: 26, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
61 3 0.02
62 3 0.02
63 18 0.12
64 18 0.12
65 6 0.04
66 17 0.12
67 29 0.20
68 47 0.33
69 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (62 bp):
AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGACAAGAGAGCTACGAGATAAATG
Found at i:51052032 original size:45 final size:45
Alignment explanation
Indices: 51051972--51052104 Score: 167
Period size: 45 Copynumber: 3.0 Consensus size: 45
51051962 GAATCTATTA
* * * *
51051972 CGATGCCGATGTCCCAGACAAGGTCTTACACGTAACCACATATAT
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATAT
* *
51052017 TGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATAT
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATAT
* * * * *
51052062 CAATTCCAATGTCCCAAACATGGTCTTACTCGAAAATACATAT
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATAT
51052105 CAAAATCCTA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (45 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATAT
Found at i:51056860 original size:27 final size:27
Alignment explanation
Indices: 51056830--51057007 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
51056820 ATATTGAGTC
* *
51056830 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
51056857 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
51056884 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
51056912 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
51056939 CGCACACTTAGTGC-ATCATATTCTTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
51056966 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
51056993 CGCACACTTGGTGCT
1 CGCACACTTAGTGCT
51057008 GTACAATTTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:51065041 original size:27 final size:27
Alignment explanation
Indices: 51065011--51065188 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
51065001 ATATTGAGTC
* *
51065011 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
51065038 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
51065065 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
51065093 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
51065120 CGCACACTTAGTGC-ATCATATTCTTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
51065147 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
51065174 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51065189 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:51071021 original size:29 final size:29
Alignment explanation
Indices: 51070987--51071060 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
51070977 TAATCAACCG
*
51070987 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
51071016 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
51071045 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
51071061 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:51074692 original size:27 final size:27
Alignment explanation
Indices: 51074608--51074692 Score: 109
Period size: 27 Copynumber: 3.1 Consensus size: 27
51074598 ACCCCTAGTC
*
51074608 GATAAAATGACTATTATACCCCTGT-A
1 GATAAAATGACTATTATGCCCCTGTGA
* *
51074634 TGATAAAATGACTATTATGCCTCTGTGT
1 -GATAAAATGACTATTATGCCCCTGTGA
* *
51074662 GATAAAATGACTGTTATGCCCCTATGA
1 GATAAAATGACTATTATGCCCCTGTGA
51074689 GATA
1 GATA
51074693 TATGATTATA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTGTGA
Found at i:51092214 original size:14 final size:15
Alignment explanation
Indices: 51092195--51092233 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
51092185 AAGAAAATGA
51092195 TGATATATG-ACAAG
1 TGATATATGAACAAG
*
51092209 TGATATATGAAATAAG
1 TGATATATG-AACAAG
51092225 TGATATATG
1 TGATATATG
51092234 TTATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
16 13 0.59
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.33
Consensus pattern (15 bp):
TGATATATGAACAAG
Found at i:51097024 original size:38 final size:38
Alignment explanation
Indices: 51096973--51097131 Score: 192
Period size: 38 Copynumber: 3.9 Consensus size: 38
51096963 TAACATGTAC
*
51096973 AACCGTGGCATATCCACTTAGCACCACGTTATATGTTT
1 AACCGTGGCATATCCACTTAGCACCACGTTACATGTTT
* * *
51097011 AACCGTGGTATATCCATTTAGCACCACGTTAATGAATCAATATATGT
1 AACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-T
51097058 AACCGTGGCATATCCACTTAGCACCACGTTACATGTTT
1 AACCGTGGCATATCCACTTAGCACCACGTTACATGTTT
*
51097096 AACCGTGGTATATCCACTTAGCACCACGTTACATGT
1 AACCGTGGCATATCCACTTAGCACCACGTTACATGT
51097132 ATCAATATGT
Statistics
Matches: 104, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
38 62 0.60
39 2 0.02
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 1 0.01
45 3 0.03
46 2 0.02
47 27 0.26
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (38 bp):
AACCGTGGCATATCCACTTAGCACCACGTTACATGTTT
Found at i:51097117 original size:85 final size:86
Alignment explanation
Indices: 51096973--51097211 Score: 354
Period size: 86 Copynumber: 2.8 Consensus size: 86
51096963 TAACATGTAC
* *
51096973 AACCGTGGCATATCCACTTAGCACCACGTTATATGTTTAACCGTGGTATATCCATTTAGCACCAC
1 AACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCAC
51097038 GTTA-ATGAATCAATATATGT
66 GTTACATGAATCAATATATGT
51097058 AACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCAC
1 AACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCAC
* *
51097123 GTTACATGTATCAATATGTGT
66 GTTACATGAATCAATATATGT
* * *** * * * *
51097144 AATCATATTATATCCACTTAGCACCAAGTTACACGTATAACCATGGTATATCCACTTAGCACCAC
1 AACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCAC
51097209 GTT
66 GTT
51097212 TTTTTATTCC
Statistics
Matches: 140, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
85 67 0.48
86 73 0.52
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (86 bp):
AACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCAC
GTTACATGAATCAATATATGT
Found at i:51099926 original size:15 final size:15
Alignment explanation
Indices: 51099888--51099928 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
51099878 GAAGCCCAGA
51099888 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* * *
51099903 AGAAAGAAATCCATG
1 ATAAGGAAATCCAAG
51099918 ATAAGGAAATC
1 ATAAGGAAATC
51099929 TCATTTATAG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.54, C:0.12, G:0.20, T:0.15
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Done.