Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 161 of 316
Found at i:51103214 original size:38 final size:38
Alignment explanation
Indices: 51103171--51103415 Score: 170
Period size: 38 Copynumber: 5.9 Consensus size: 38
51103161 TTTCAAATTA
51103171 ACATGTATAATTGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAATTGTGGCATATCCACTTAGCACCACGTT
* *
51103209 ACATGTTTAACTGT-GCTATATCCACTTAGCACCACGTT
1 ACATGTATAATTGTGGC-ATATCCACTTAGCACCACGTT
51103247 A-ATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATG--T--ATA-AT-T----GTGGCATATCCACTTAGCACCACGTT
* ** ** *
51103294 ACATGTTTAACCGTGGTTTATCCACTTAGCACTACGTT
1 ACATGTATAATTGTGGCATATCCACTTAGCACCACGTT
* *
51103332 ACATGTATCAATATGTGTAATCATGGTATATCCATTTAGCACCACGTT
1 ACATGTAT--A-AT-TG------TGGCATATCCACTTAGCACCACGTT
* * *
51103380 ACACGTATAATCGTGGTATATCCACTTAGCACCACG
1 ACATGTATAATTGTGGCATATCCACTTAGCACCACG
51103416 ATTTTTTATT
Statistics
Matches: 165, Mismatches: 19, Indels: 46
0.72 0.08 0.20
Matches are distributed among these distances:
37 5 0.03
38 86 0.52
39 1 0.01
40 1 0.01
41 3 0.02
42 2 0.01
43 2 0.01
44 3 0.02
45 2 0.01
46 2 0.01
47 24 0.15
48 34 0.21
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (38 bp):
ACATGTATAATTGTGGCATATCCACTTAGCACCACGTT
Found at i:51103275 original size:85 final size:86
Alignment explanation
Indices: 51103183--51103415 Score: 335
Period size: 86 Copynumber: 2.7 Consensus size: 86
51103173 ATGTATAATT
*
51103183 GTGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGCTATATCCACTTAGCACCACGTTA
1 GTGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTA
51103248 -ATGAATCAATATATGTAACC
66 CATGAATCAATATATGTAACC
* * *
51103268 GTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTTTATCCACTTAGCACTACGTTA
1 GTGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTA
* * *
51103333 CATGTATCAATATGTGTAATC
66 CATGAATCAATATATGTAACC
* * * * *
51103354 ATGGTATATCCATTTAGCACCACGTTACACGTATAA-TCGTGGTATATCCACTTAGCACCACG
1 GTGGCATATCCACTTAGCACCACGTTACATGTTTAACT-GTGGTATATCCACTTAGCACCACG
51103416 ATTTTTTATT
Statistics
Matches: 131, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
85 61 0.47
86 70 0.53
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (86 bp):
GTGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTA
CATGAATCAATATATGTAACC
Found at i:51114683 original size:14 final size:15
Alignment explanation
Indices: 51114664--51114698 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
51114654 ATCCTAATCA
51114664 AATAAAG-AAAAATG
1 AATAAAGAAAAAATG
51114678 AATAAAGAAAAAATG
1 AATAAAGAAAAAATG
51114693 AATAAA
1 AATAAA
51114699 ACAAAGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.14
Consensus pattern (15 bp):
AATAAAGAAAAAATG
Found at i:51120850 original size:46 final size:46
Alignment explanation
Indices: 51120783--51120911 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
51120773 TGTAACCCGC
* * * *
51120783 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
51120829 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
51120875 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51120912 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51120930 original size:46 final size:45
Alignment explanation
Indices: 51120791--51120930 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
51120781 GCCCATAAGC
* ** * *
51120791 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
51120837 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
51120883 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
51120929 GA
1 GA
51120931 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:51121367 original size:31 final size:30
Alignment explanation
Indices: 51121326--51121389 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
51121316 TAATCCTTAA
51121326 CTAAAATTTTGGCAAAATTACAATTTTGCCC
1 CTAAAATTTT-GCAAAATTACAATTTTGCCC
* * * *
51121357 CTAAACTTTTGCATATTTACATTTTTGCCC
1 CTAAAATTTTGCAAAATTACAATTTTGCCC
51121387 CTA
1 CTA
51121390 GGCTCGGGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 20 0.69
31 9 0.31
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (30 bp):
CTAAAATTTTGCAAAATTACAATTTTGCCC
Found at i:51134716 original size:17 final size:18
Alignment explanation
Indices: 51134690--51134724 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
51134680 TAAATCAAGT
*
51134690 TATAACAATC-TTAAAAA
1 TATAAAAATCGTTAAAAA
51134707 TATAAAAATCGTTAAAAA
1 TATAAAAATCGTTAAAAA
51134725 AGAGACAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.29
Consensus pattern (18 bp):
TATAAAAATCGTTAAAAA
Found at i:51137422 original size:40 final size:40
Alignment explanation
Indices: 51137375--51137519 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
51137365 CTCGCACAAG
* * * * *
51137375 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
51137415 GCCTTCGGGAGTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
51137455 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
51137496 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
51137520 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:51138749 original size:38 final size:38
Alignment explanation
Indices: 51138707--51138782 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
51138697 CAAGAACTCC
*
51138707 TTCCTCCTTCCTTAGAATTTTCGGCTAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
51138745 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
51138783 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:51145478 original size:40 final size:40
Alignment explanation
Indices: 51145431--51145575 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
51145421 CTCGCACAAG
* * * * *
51145431 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
51145471 GCCTTCGGGAGTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
51145511 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
51145552 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
51145576 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:51146805 original size:38 final size:38
Alignment explanation
Indices: 51146763--51146838 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
51146753 CAAGAACTCC
51146763 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
51146801 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
51146839 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:51151722 original size:44 final size:43
Alignment explanation
Indices: 51151674--51151828 Score: 158
Period size: 41 Copynumber: 3.7 Consensus size: 43
51151664 TGTTTTATTA
*
51151674 TGTAAGACCACATCTGGGACATTGGCATCGACT-TCTGTTTTACG
1 TGTAAGACCACATCTGGGACATTGGCATCGA-TATCTG-ATTACG
** *
51151718 TGTAAGACCATGTCTGAGACATTGGCATCG-TATCTGATT-CG
1 TGTAAGACCACATCTGGGACATTGGCATCGATATCTGATTACG
* * * *
51151759 TGTAAGACC-CAGTCTGGGACACTGGCATCGATGTTTGATTACA
1 TGTAAGACCACA-TCTGGGACATTGGCATCGATATCTGATTACG
* *
51151802 TGTAAGA-CACGTCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACATTGGCAT
51151829 TGTATATGCT
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 27 0.29
42 25 0.27
43 13 0.14
44 27 0.29
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACATTGGCATCGATATCTGATTACG
Found at i:51151774 original size:41 final size:42
Alignment explanation
Indices: 51151674--51151833 Score: 150
Period size: 42 Copynumber: 3.8 Consensus size: 42
51151664 TGTTTTATTA
*
51151674 TGTAAGACCACA-TCTGGGACATTGGCATCG-ACTTCTGTTTTACG
1 TGTAAGACC-CAGTCTGGGACATTGGCATCGTA--TCTG-ATTACG
*
51151718 TGTAAGA-CCATGTCTGAGACATTGGCATCGTATCTGATT-CG
1 TGTAAGACCCA-GTCTGGGACATTGGCATCGTATCTGATTACG
* * * *
51151759 TGTAAGACCCAGTCTGGGACACTGGCATCGATGTTTGATTACA
1 TGTAAGACCCAGTCTGGGACATTGGCATCG-TATCTGATTACG
* * *
51151802 TGTAAGACAC-GTCTGGGACGTTGGCATTGTAT
1 TGTAAGACCCAGTCTGGGACATTGGCATCGTAT
51151834 ATGCTTTCCG
Statistics
Matches: 98, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
41 28 0.29
42 30 0.31
43 15 0.15
44 24 0.24
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCCAGTCTGGGACATTGGCATCGTATCTGATTACG
Found at i:51154305 original size:77 final size:77
Alignment explanation
Indices: 51154212--51154363 Score: 304
Period size: 77 Copynumber: 2.0 Consensus size: 77
51154202 TCGAATAGAG
51154212 ATCGTGCTAGATCGCATTCAAACTTCAAAGCTCCAGCTACATCTGCTGCCAGTGTCGAAAATGCT
1 ATCGTGCTAGATCGCATTCAAACTTCAAAGCTCCAGCTACATCTGCTGCCAGTGTCGAAAATGCT
51154277 AAATCTGATTGC
66 AAATCTGATTGC
51154289 ATCGTGCTAGATCGCATTCAAACTTCAAAGCTCCAGCTACATCTGCTGCCAGTGTCGAAAATGCT
1 ATCGTGCTAGATCGCATTCAAACTTCAAAGCTCCAGCTACATCTGCTGCCAGTGTCGAAAATGCT
51154354 AAATCTGATT
66 AAATCTGATT
51154364 ACCCTGAGTG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (77 bp):
ATCGTGCTAGATCGCATTCAAACTTCAAAGCTCCAGCTACATCTGCTGCCAGTGTCGAAAATGCT
AAATCTGATTGC
Found at i:51157303 original size:29 final size:29
Alignment explanation
Indices: 51157226--51157337 Score: 104
Period size: 29 Copynumber: 3.9 Consensus size: 29
51157216 AAATTCACAT
* *
51157226 ACCTATATTTGGCCCATTAAGCCC-AATC
1 ACCTATATATGGCCCATTAGGCCCAAATC
* *
51157254 A--TATTCATATAGCCCCTTTAGGCCCAAATC
1 ACCTA-T-ATAT-GGCCCATTAGGCCCAAATC
*
51157284 ACCTATATATGGCCCATTAGGCCCAAATT
1 ACCTATATATGGCCCATTAGGCCCAAATC
* * *
51157313 ACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAGGCCCA
51157338 GTCACATTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
26 2 0.03
27 1 0.01
28 4 0.06
29 49 0.72
30 9 0.13
31 1 0.01
32 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
ACCTATATATGGCCCATTAGGCCCAAATC
Found at i:51157333 original size:58 final size:58
Alignment explanation
Indices: 51157226--51157337 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 58
51157216 AAATTCACAT
* * *
51157226 ACCTATATTTGGCCCATTAAGCCCAATCATATTCATATAGCCCCTTTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAATCACATTCATATAGCCCCGTTAGGCCCAAATC
* * * *
51157284 ACCTATATATGGCCCATTAGGCCCAAATTACATTTATAT-GGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCC-AATCACATTCATATAGCCCCGTTAGGCCCA
51157338 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
58 35 0.76
59 11 0.24
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAATCACATTCATATAGCCCCGTTAGGCCCAAATC
Found at i:51157431 original size:17 final size:18
Alignment explanation
Indices: 51157409--51157442 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51157399 TGCTTATTAT
51157409 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
51157426 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
51157443 TCTGGCTGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:51161823 original size:15 final size:15
Alignment explanation
Indices: 51161803--51161867 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
51161793 GTATCTTGGG
51161803 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
51161818 TTTCTTTATTCTCGG-
1 TTTCTTTATTCT-GGA
* *
51161833 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
*
51161848 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
51161862 TTTCTT
1 TTTCTT
51161868 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 14 0.34
15 21 0.51
16 6 0.15
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51163787 original size:27 final size:26
Alignment explanation
Indices: 51163757--51163811 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
51163747 TACTAAAATA
*
51163757 CCCTAAGTATGAAAATTACCATTATAC
1 CCCTAAGTAT-AAAATGACCATTATAC
* *
51163784 CCCTAGGTGTAAAATGACCATTATAC
1 CCCTAAGTATAAAATGACCATTATAC
51163810 CC
1 CC
51163812 TTGGGGTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27
Consensus pattern (26 bp):
CCCTAAGTATAAAATGACCATTATAC
Found at i:51163951 original size:28 final size:28
Alignment explanation
Indices: 51163919--51163981 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
51163909 GGAGGAAGCG
* *
51163919 TTCTGGTTGCTCTACCACAAATATCTGT
1 TTCTGGTGGCCCTACCACAAATATCTGT
* *
51163947 TTCTGGTGGCCCTACCACAATTATTTGT
1 TTCTGGTGGCCCTACCACAAATATCTGT
51163975 TTCTGGT
1 TTCTGGT
51163982 AACTCGGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.41
Consensus pattern (28 bp):
TTCTGGTGGCCCTACCACAAATATCTGT
Found at i:51173407 original size:42 final size:42
Alignment explanation
Indices: 51173339--51173454 Score: 112
Period size: 43 Copynumber: 2.7 Consensus size: 42
51173329 GCTTTATGTA
* * *
51173339 TAAGACCATGTCTGGGACA-TCGGCATCGTATCTAATTTCGTG
1 TAAGACCCTGTCTGGGACAGT-AGCATCGTATCTAATTTCATG
* *
51173381 TAAGACCCTGTCTGGGACAGTAGCATCGATGTCTGATTTCATG
1 TAAGACCCTGTCTGGGACAGTAGCATCG-TATCTAATTTCATG
* *
51173424 TAAGAACAC-GTCTGGGAC-GTTGCCATCGTAT
1 TAAG-ACCCTGTCTGGGACAGTAG-CATCGTAT
51173455 AAGCTTTCCG
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
42 29 0.47
43 30 0.48
44 3 0.05
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (42 bp):
TAAGACCCTGTCTGGGACAGTAGCATCGTATCTAATTTCATG
Found at i:51193479 original size:68 final size:67
Alignment explanation
Indices: 51193407--51193556 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
51193397 CATCATGTGT
* * *
51193407 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATAC-TATG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACATATGAAGGACACC
51193469 ATGTAG
62 ATGTAG
** * * *
51193475 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATTCGTGGTTCCATATGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACATATGAAGGACACCATGT
51193540 AG
66 AG
51193542 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
51193557 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 19 0.27
65 6 0.09
66 6 0.09
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACATATGAAGGACACCATGT
AG
Found at i:51203300 original size:40 final size:41
Alignment explanation
Indices: 51203251--51203345 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 41
51203241 TATCTCAGTA
51203251 TCGCACACTTAGTGCC-TCATATAGCCGAAGCTA-TTCCAAC
1 TCGCACACTTAGTGCCAT-ATATAGCCGAAGCTATTTCCAAC
* * * *
51203291 TCGCACACTTAGTGCCATTTGTAGCTGAAGCTATTTCGAAC
1 TCGCACACTTAGTGCCATATATAGCCGAAGCTATTTCCAAC
51203332 -CGCACACTT-GTGCC
1 TCGCACACTTAGTGCC
51203346 GAACTTAGTC
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
39 5 0.10
40 37 0.76
41 7 0.14
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATATATAGCCGAAGCTATTTCCAAC
Found at i:51207101 original size:47 final size:46
Alignment explanation
Indices: 51207050--51207486 Score: 590
Period size: 47 Copynumber: 9.2 Consensus size: 46
51207040 TGAGGATTTT
*
51207050 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-ATGTGTATGTGTGATAAGGCCGAATGGCCA
*
51207097 ATGTGATGAATGTGAAA-GTGTATGTATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAAATGTGTATG--TGTGATAAGGCCGAATGGCCA
*
51207144 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-ATGTGTATGTGTGATAAGGCCGAATGGCCA
*
51207191 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAA-TG--TGTATGTGTGATAAGGCCGAATGGCCA
*
51207240 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-ATGTGTATGTGTGATAAGGCCGAATGGCCA
*
51207287 ATGTGATGAATGTGAAA-GTGTATGTATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAAATGTGTATG--TGTGATAAGGCCGAATGGCCA
* *
51207334 ATGTGATGAATGTGAAAGTGTATGTATATGTGATACGGCCGAATGGCCA
1 ATGTGATGAATGTGAAA-TG--TGTATGTGTGATAAGGCCGAATGGCCA
*
51207383 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAA-TG--TGTATGTGTGATAAGGCCGAATGGCCA
* * * *
51207432 ATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAA-TGTGTATGTGTGATAAGGCCGAATGGCCA
51207479 ATGTGATG
1 ATGTGATG
51207487 GAAGTGGATG
Statistics
Matches: 359, Mismatches: 17, Indels: 28
0.89 0.04 0.07
Matches are distributed among these distances:
45 12 0.03
46 3 0.01
47 201 0.56
48 1 0.00
49 136 0.38
50 1 0.00
51 5 0.01
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (46 bp):
ATGTGATGAATGTGAAATGTGTATGTGTGATAAGGCCGAATGGCCA
Found at i:51207458 original size:96 final size:94
Alignment explanation
Indices: 51207050--51207486 Score: 698
Period size: 96 Copynumber: 4.6 Consensus size: 94
51207040 TGAGGATTTT
51207050 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
51207115 TGTATGTATGTGATAAGGTCGAATGGCCA
66 TGTATGTATGTGATAAGGCCGAATGGCCA
51207144 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
51207209 TGTATGTATATGTGATAAGGCCGAATGGCCA
66 TGTATG--TATGTGATAAGGCCGAATGGCCA
51207240 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
51207305 TGTATGTATGTGATAAGGTCGAATGGCCA
66 TGTATGTATGTGATAAGGCCGAATGGCCA
* * *
51207334 ATGTGATGAATGTGAA-AGTGTATGTATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGA
1 ATGTGATGAATGTGAACA-TG--CGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
51207398 AAGTGTATGTATATGTGATAAGGCCGAATGGCCA
63 AAGTGTATG--TATGTGATAAGGCCGAATGGCCA
*** * *
51207432 ATGTGATGAATGTGAA-AGTATATATATATGATAAGGCCGAATGGCCAATGTGATG
1 ATGTGATGAATGTGAACA-TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
51207487 GAAGTGGATG
Statistics
Matches: 326, Mismatches: 10, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
93 1 0.00
94 111 0.34
96 173 0.53
98 41 0.13
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATGTATGTGATAAGGCCGAATGGCCA
Found at i:51207510 original size:143 final size:144
Alignment explanation
Indices: 51207050--51207486 Score: 656
Period size: 143 Copynumber: 3.1 Consensus size: 144
51207040 TGAGGATTTT
* *
51207050 ATGTGATGAATGTGAACA-TG-CGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAA-AGTGTAGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* ** *
51207113 AGTGTATG--TATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA-TGCGTATGTGTGA
65 AGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGA
51207175 TAAGGCCGAATGGCCA
129 TAAGGCCGAATGGCCA
51207191 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTA-GTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
51207256 CA-TG--CGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGA
65 -AGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
*
51207318 TAAGGTCGAATGGCCA
129 TAAGGCCGAATGGCCA
*
51207334 ATGTGATGAATGTGAAAGTGTATGTATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTA-GTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
51207399 AGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGAT
65 AGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
51207464 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
51207479 ATGTGATG
1 ATGTGATG
51207487 GAAGTGGATG
Statistics
Matches: 269, Mismatches: 17, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
140 1 0.00
141 19 0.07
142 2 0.01
143 170 0.63
144 1 0.00
145 76 0.28
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (144 bp):
ATGTGATGAATGTGAAAGTGTAGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
GTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCGAATGGCCA
Found at i:51209373 original size:18 final size:18
Alignment explanation
Indices: 51209344--51209389 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
51209334 GACTGCTTTA
51209344 AAGCTCGCATAGAATAAT
1 AAGCTCGCATAGAATAAT
* * *
51209362 AGGCTCGTATAGAATTAT
1 AAGCTCGCATAGAATAAT
51209380 AAGCTCGCAT
1 AAGCTCGCAT
51209390 GATTAAGGTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (18 bp):
AAGCTCGCATAGAATAAT
Found at i:51218479 original size:69 final size:70
Alignment explanation
Indices: 51218348--51218479 Score: 221
Period size: 69 Copynumber: 1.9 Consensus size: 70
51218338 AGTTTATTAC
* * * *
51218348 TAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
51218413 TTAGT
66 TTAGT
51218418 TAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
51218480 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.62
70 22 0.38
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (70 bp):
TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
TTAGT
Found at i:51219290 original size:39 final size:39
Alignment explanation
Indices: 51219238--51219498 Score: 317
Period size: 39 Copynumber: 6.7 Consensus size: 39
51219228 ATTTGATGTA
51219238 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
51219277 TATACGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
51219316 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGTATTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
**
51219355 TATCCCGG-CTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TAT-CCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * *
51219395 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * ** * * *
51219434 TATCCGGACTTAAGGTCTGTAGGCTTCGCACTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
51219473 TATCCGGGCTTAAAGTCCGTAGGCTT
1 TATCCGGACTTAAGGTCCGCAGGCTT
51219499 TGTGTTGGTG
Statistics
Matches: 197, Mismatches: 22, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
39 164 0.83
40 33 0.17
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:51219414 original size:79 final size:79
Alignment explanation
Indices: 51219238--51219446 Score: 323
Period size: 79 Copynumber: 2.7 Consensus size: 79
51219228 ATTTGATGTA
* * * **
51219238 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATACGGACTT-AAGGTCCGCAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGTATTATATCCGGACTTAAAGACCCGCAGGCT
51219302 TCGTGCTGGAATTG
66 TCGTGCTGGAATTG
*
51219316 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGTATTATATCCCGG-CTTAAAGACCCGCAGGC
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGTATTATAT-CCGGACTTAAAGACCCGCAGGC
51219380 TTCGTGCTGGAATTG
65 TTCGTGCTGGAATTG
* *
51219395 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTATATCCGGACTTAA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGTATTATATCCGGACTTAA
51219447 GGTCTGTAGG
Statistics
Matches: 119, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
78 46 0.39
79 73 0.61
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (79 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGTATTATATCCGGACTTAAAGACCCGCAGGCT
TCGTGCTGGAATTG
Found at i:51219468 original size:118 final size:118
Alignment explanation
Indices: 51219254--51219487 Score: 360
Period size: 118 Copynumber: 2.0 Consensus size: 118
51219244 GACTTAAGGT
* * *
51219254 CCGCAGGCTTCGTGCTGGAATTGTATACGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATACGGACTTAAGATCCGCAGGCTTCGTGCTGGAACTATAT
** *
51219319 CCGGACTTAAGGTCCGCAGGCTTCATGCTGGTATTATATCCCGGCTTAAAGAC
66 CCGGACTTAAGGTCCGCAGGCTTCACACTGGTACTATATCCCGGCTTAAAGAC
* *
51219372 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTATAT
1 CCGCAGGCTTCGTGCTGGAATTGTATACGGACTTAAGATCCGCAGGCTTCGTGCTGGAACTATAT
* * * *
51219437 CCGGACTTAAGGTCTGTAGGCTTCGCACTGGTACTATATCCGGGCTTAAAG
66 CCGGACTTAAGGTCCGCAGGCTTCACACTGGTACTATATCCCGGCTTAAAG
51219488 TCCGTAGGCT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
118 104 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (118 bp):
CCGCAGGCTTCGTGCTGGAATTGTATACGGACTTAAGATCCGCAGGCTTCGTGCTGGAACTATAT
CCGGACTTAAGGTCCGCAGGCTTCACACTGGTACTATATCCCGGCTTAAAGAC
Found at i:51221942 original size:43 final size:42
Alignment explanation
Indices: 51221882--51221989 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 42
51221872 ATACCAATGT
* * *
51221882 CATATCCCAGACATGGTCTTACATAGGA-TCTCATATCGATGC
1 CATAGCCCAGATATGGTCTTACA-AGAAGTCTCATATCGATGC
* *
51221924 CAATAGCCCA-ACTATGGTCTTACACGAAGTCTCATATCGGTGC
1 C-ATAGCCCAGA-TATGGTCTTACAAGAAGTCTCATATCGATGC
* *
51221967 CATATCCTAGATATGGTCTTACA
1 CATAGCCCAGATATGGTCTTACA
51221990 CATAATTTCA
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
42 22 0.40
43 33 0.60
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (42 bp):
CATAGCCCAGATATGGTCTTACAAGAAGTCTCATATCGATGC
Found at i:51225671 original size:19 final size:18
Alignment explanation
Indices: 51225647--51225682 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
51225637 TTCTAAAAAA
*
51225647 TTTAATATTATAATTTTAT
1 TTTAATAATA-AATTTTAT
51225666 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
51225683 ACAATAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:51225771 original size:22 final size:23
Alignment explanation
Indices: 51225728--51225774 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
51225718 TAGTCAGTGC
* *
51225728 TTTATAACATAAAATATGAATAT
1 TTTATAAAATAAAATATAAATAT
51225751 TTTATAAAAT-AAATATAAATAT
1 TTTATAAAATAAAATATAAATAT
51225773 TT
1 TT
51225775 ATTTAAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
TTTATAAAATAAAATATAAATAT
Found at i:51229960 original size:3 final size:3
Alignment explanation
Indices: 51229952--51229990 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
51229942 TTATCACCCC
51229952 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
51229991 TTGTGTTTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:51239084 original size:40 final size:40
Alignment explanation
Indices: 51239029--51239253 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
51239019 TATTCGGATG
*
51239029 ATATCCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * **
51239069 ATATCCGGGCTAAGTCCTGAAGGCATTTGTTCGAGTAGTTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * * *
51239112 ATACCCGGGCTAAGTCTCGAATGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
51239152 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
51239192 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
51239232 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
51239254 TACTTGGTTT
Statistics
Matches: 152, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
39 14 0.09
40 105 0.69
41 1 0.01
43 32 0.21
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:51239174 original size:83 final size:83
Alignment explanation
Indices: 51239033--51239253 Score: 229
Period size: 83 Copynumber: 2.7 Consensus size: 83
51239023 CGGATGATAT
* * * *
51239033 CCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTTACTATATCCGGGCTAAGTCCTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
*
51239098 TTCGAGTAGTTGTTATAC
66 TGCGAGTAGTTGTTATAC
* * * * *
51239116 CCGGGCTAAGTCTCGAATGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
** *
51239181 TGC--G-AGTTACTATAT
66 TGCGAGTAGTTGTTATAC
* * * *
51239196 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTG-CGATATCC-GGCTAA-ATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTCTGCAAG-TGACTATATCCGGGCTAAGA-CCCGAAGG
51239254 TACTTGGTTT
Statistics
Matches: 117, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.01
79 14 0.12
80 41 0.35
81 3 0.03
83 58 0.50
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTTCTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
TGCGAGTAGTTGTTATAC
Found at i:51245252 original size:44 final size:44
Alignment explanation
Indices: 51245202--51245330 Score: 152
Period size: 44 Copynumber: 2.9 Consensus size: 44
51245192 GTTATTATGG
*
51245202 CAAATCTTATCTCTTTGAGGTTACAATGGAGCAGATTGAAGCCA
1 CAAATCTTATCTCTTTGAGGTTGCAATGGAGCAGATTGAAGCCA
* * * * **
51245246 CAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTGAAGTTA
1 CAAATCTTATCTCTTTGAGGTTGCAATGGAGCAGATTGAAGCCA
* * *
51245290 CAAATCTTATCTCCTTG-GAGTTGCAATGGAGTAGATCGAAG
1 CAAATCTTATCTCTTTGAG-GTTGCAATGGAGCAGATTGAAG
51245331 ATAGCAAGCC
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (44 bp):
CAAATCTTATCTCTTTGAGGTTGCAATGGAGCAGATTGAAGCCA
Found at i:51245554 original size:44 final size:44
Alignment explanation
Indices: 51245504--51245863 Score: 138
Period size: 44 Copynumber: 8.0 Consensus size: 44
51245494 GATAACGAAT
* *
51245504 CTTATCTCTCTGAAGTTGCAGTTGAGCAGATTAAAGCTATAAAC
1 CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * * * **
51245548 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
1 CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * * * *
51245592 CTTATCTCTCTG-AGATTACAGTGGAACAGACTAAAGATAGCAAAT
1 CTTATCTCTCTGAAG-TTGCAGTGGAGCAGATTAAAGCTA-CAAAC
* * * * * *
51245637 CTTAT-TACCCTGAAGTTGTACTGGA-AAAATTAAAGCTGCAAATTACAAAT
1 CTTATCT-CTCTGAAGTTGCAGTGGAGCAGATTAAA---GC----TACAAAC
* * * * * * * *
51245687 CTTATCTCCCTAAAATTGCAGTGGAGTAGATCAAAGATAGATAAG
1 CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA-AAC
* * ** * * * *
51245732 CTTAACTCCCTGAAGTTAAAGTGGAGTAGA-TAGAAGATAGTAAAT
1 CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTA-AAGCTA-CAAAC
* ** ** *
51245777 CTTATCTC-CTCGAAGTTGTAGTGGAGCAGATGGAAGCTATTAAT
1 CTTATCTCTCT-GAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * * *
51245821 CTTATCTC-CTTGAAGTTGTAGTGGAGTAGATTGAAGCAACAAA
1 CTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGCTACAAA
51245864 TTCTATATCT
Statistics
Matches: 242, Mismatches: 55, Indels: 38
0.72 0.16 0.11
Matches are distributed among these distances:
43 2 0.01
44 118 0.49
45 84 0.35
46 3 0.01
47 1 0.00
48 1 0.00
50 24 0.10
51 9 0.04
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (44 bp):
CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
Found at i:51245792 original size:45 final size:45
Alignment explanation
Indices: 51245683--51245856 Score: 160
Period size: 45 Copynumber: 3.9 Consensus size: 45
51245673 TGCAAATTAC
* * *
51245683 AAATCTTATCTCC-CTAAAATTGCAGTGGAGTAGATCA-AAGATAG-
1 AAATCTTATCTCCTC-GAAGTTGTAGTGGAGTAGAT-AGAAGATAGT
* * **
51245727 ATAAGCTTAACTCC-CTGAAGTTAAAGTGGAGTAGATAGAAGATAGT
1 A-AATCTTATCTCCTC-GAAGTTGTAGTGGAGTAGATAGAAGATAGT
* * *
51245773 AAATCTTATCTCCTCGAAGTTGTAGTGGAGCAGATGGAAGCTA-T
1 AAATCTTATCTCCTCGAAGTTGTAGTGGAGTAGATAGAAGATAGT
* * *
51245817 TAATCTTATCTCCTTGAAGTTGTAGTGGAGTAGATTGAAG
1 AAATCTTATCTCCTCGAAGTTGTAGTGGAGTAGATAGAAG
51245857 CAACAAATTC
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
44 39 0.36
45 68 0.62
46 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (45 bp):
AAATCTTATCTCCTCGAAGTTGTAGTGGAGTAGATAGAAGATAGT
Found at i:51247729 original size:3 final size:3
Alignment explanation
Indices: 51247721--51247756 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
51247711 TTGTCACCCC
51247721 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
51247757 TTGTGTTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:51248960 original size:15 final size:16
Alignment explanation
Indices: 51248928--51248981 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 16
51248918 CAAATACTTT
* *
51248928 TTATTATTTTTCATAA
1 TTATTATTTTTAAAAA
51248944 TT-TTATTTTTAAAAA
1 TTATTATTTTTAAAAA
51248959 TTATATATATTTTAAAGAA
1 TTAT-TAT-TTTTAAA-AA
51248978 TTAT
1 TTAT
51248982 GTTTATCACT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 13 0.41
16 3 0.09
17 3 0.09
18 7 0.22
19 6 0.19
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (16 bp):
TTATTATTTTTAAAAA
Found at i:51249167 original size:13 final size:13
Alignment explanation
Indices: 51249149--51249173 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51249139 GCATTACCGA
51249149 CTAATAGACACGG
1 CTAATAGACACGG
51249162 CTAATAGACACG
1 CTAATAGACACG
51249174 CCCGTGTGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (13 bp):
CTAATAGACACGG
Found at i:51250440 original size:43 final size:43
Alignment explanation
Indices: 51250329--51250485 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
51250319 CATAAGCTTG
* * * **
51250329 TACAATGCC-ATATCCCAGATATGGTCTTACATGCTATCT-AA
1 TACAATGCCAATGTCCCAAACATGGTCTTACATGAAATCTCAA
* * * * * * *
51250370 TATC-ATGCCACTGTACCAGATAGGGTCTTACATGAAATC-GAT
1 TA-CAATGCCAATGTCCCAAACATGGTCTTACATGAAATCTCAA
* *
51250412 TAACGATGCCAATGT-CCAAGACATGGTCTTACATGTAATCTCAA
1 T-ACAATGCCAATGTCCCAA-ACATGGTCTTACATGAAATCTCAA
51250456 TACAATGCCAATGTCCCAAACATGGTCTTA
1 TACAATGCCAATGTCCCAAACATGGTCTTA
51250486 GGTGTAATCA
Statistics
Matches: 93, Mismatches: 15, Indels: 14
0.76 0.12 0.11
Matches are distributed among these distances:
41 7 0.08
42 30 0.32
43 50 0.54
44 6 0.06
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAAACATGGTCTTACATGAAATCTCAA
Found at i:51252813 original size:11 final size:11
Alignment explanation
Indices: 51252797--51252825 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
51252787 TAAAATGGGA
51252797 AAAATCAAGCC
1 AAAATCAAGCC
51252808 AAAATCAAGCC
1 AAAATCAAGCC
51252819 AAAATCA
1 AAAATCA
51252826 GCTATTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.59, C:0.24, G:0.07, T:0.10
Consensus pattern (11 bp):
AAAATCAAGCC
Found at i:51257132 original size:43 final size:43
Alignment explanation
Indices: 51257052--51257262 Score: 275
Period size: 43 Copynumber: 4.9 Consensus size: 43
51257042 AGGTACAATT
* * **
51257052 CCAACGTCCCTA-ACATGGTCTTACATGTAATTTCATATCGATG
1 CCAACGTCCC-AGACGTGGTCTTACACGTAATCACATATCGATG
* * * *
51257095 CC-ACTGTCCTAGACAG-GGTCTTACTCGTAAACACATATAGATG
1 CCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATATCGATG
51257138 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
1 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
* * *
51257181 CCAACGTCCTAGACGTTGTCTTACACGTAGTCACATATCGATG
1 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
51257224 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATC
1 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATC
51257263 TATGTCTATA
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
42 4 0.03
43 139 0.96
44 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (43 bp):
CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
Found at i:51265949 original size:27 final size:27
Alignment explanation
Indices: 51265919--51266086 Score: 155
Period size: 27 Copynumber: 6.3 Consensus size: 27
51265909 TAAGTTGTAG
51265919 AATTACCGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAA
* * *
51265946 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAA
* *
51265973 AATTACCAAAATA-CCCTGT-AGGATAG
1 AATTACCGAAATACCCCTGTAAGG-TAA
* *
51265999 AATTACCGAAATACCCTTGTAGGGTAGA
1 AATTACCGAAATACCCCTGTAAGGTA-A
*
51266027 AA-TACCGAAATACCCCTGT-AGGTTAG
1 AATTACCGAAATACCCCTGTAAGG-TAA
* * * * **
51266053 AATTACTGAGACACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAA
51266080 AATTACC
1 AATTACC
51266087 ATTTTGCCTC
Statistics
Matches: 114, Mismatches: 20, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.02
26 25 0.22
27 81 0.71
28 6 0.05
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAA
Found at i:51266069 original size:54 final size:53
Alignment explanation
Indices: 51265915--51266082 Score: 214
Period size: 54 Copynumber: 3.2 Consensus size: 53
51265905 TGGATAAGTT
* * *
51265915 GTAGAATTACCGAAATACCCCTGTAAGGTAAAATTACTGAAATACCCCTGTAGG
1 GTAGAAATACCGAAATACCCCTGT-AGGTAGAATTACTGAAATACCCTTGTAGG
* * *
51265969 GTAGAATTACCAAAATA-CCCTGTAGGATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAGG-TAGAATTACTGAAATACCCTTGTAGG
* * *
51266022 GTAGAAATACCGAAATACCCCTGTAGGTTAGAATTACTGAGACACCCTTGTGGG
1 GTAGAAATACCGAAATACCCCTGTAGG-TAGAATTACTGAAATACCCTTGTAGG
51266076 GTA-AAAT
1 GTAGAAAT
51266083 TACCATTTTG
Statistics
Matches: 101, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
52 3 0.03
53 48 0.48
54 50 0.50
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (53 bp):
GTAGAAATACCGAAATACCCCTGTAGGTAGAATTACTGAAATACCCTTGTAGG
Found at i:51266131 original size:27 final size:26
Alignment explanation
Indices: 51266087--51266140 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
51266077 TAAAATTACC
*
51266087 ATTTTGCCTCTAGGGTGTTAAATGACT
1 ATTTTGCCCCTAGGGTG-TAAATGACT
* *
51266114 ATTTTGCCCCTCGTGTGTAAATGACT
1 ATTTTGCCCCTAGGGTGTAAATGACT
51266140 A
1 A
51266141 ACTTGTGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTTGCCCCTAGGGTGTAAATGACT
Found at i:51267358 original size:17 final size:18
Alignment explanation
Indices: 51267336--51267369 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51267326 TGAAGCATAT
51267336 AGAAAGA-CAGAATCGTG
1 AGAAAGATCAGAATCGTG
51267353 AGAAAGATCAGAATCGT
1 AGAAAGATCAGAATCGT
51267370 TTTAGGAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.47, C:0.12, G:0.26, T:0.15
Consensus pattern (18 bp):
AGAAAGATCAGAATCGTG
Found at i:51272069 original size:53 final size:53
Alignment explanation
Indices: 51271995--51272161 Score: 235
Period size: 53 Copynumber: 3.1 Consensus size: 53
51271985 TGGGCAAGTT
*
51271995 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTGTAGG
1 GTAGAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTGTAGG
** *
51272048 GTAGAATTATTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGG
1 GTAGAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTGTAGG
* * * * **
51272101 ATAGAATTACCGAAATACCCTTGTAAGGTAGAAATACTAAAATACCCTTGTAGG
1 GTAGAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAAATACCC-TGTAGG
51272155 GTAGAAT
1 GTAGAAT
51272162 AACCGAGATA
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 87 0.88
54 12 0.12
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (53 bp):
GTAGAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTGTAGG
Found at i:51272133 original size:80 final size:79
Alignment explanation
Indices: 51271995--51272175 Score: 274
Period size: 80 Copynumber: 2.3 Consensus size: 79
51271985 TGGGCAAGTT
* * *
51271995 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTGTAGGGTAGAATTATTA
1 GTAGAATTACCGAAATA-CCCTGTAAGGTAGAATTACCGAAATACCCTGTAAGGTAGAAATACTA
51272060 AAATACCCCTGTAGG
65 AAATACCCCTGTAGG
51272075 GTAGAATTACCGAAATACCCTGT-AGGATAGAATTACCGAAATACCCTTGTAAGGTAGAAATACT
1 GTAGAATTACCGAAATACCCTGTAAGG-TAGAATTACCGAAATACCC-TGTAAGGTAGAAATACT
*
51272139 AAAATACCCTTGTAGG
64 AAAATACCCCTGTAGG
* *
51272155 GTAGAATAACCGAGATACCCT
1 GTAGAATTACCGAAATACCCT
51272176 TGTGGGGTAA
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
78 3 0.03
79 25 0.27
80 65 0.70
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (79 bp):
GTAGAATTACCGAAATACCCTGTAAGGTAGAATTACCGAAATACCCTGTAAGGTAGAAATACTAA
AATACCCCTGTAGG
Found at i:51272175 original size:27 final size:27
Alignment explanation
Indices: 51271995--51272190 Score: 243
Period size: 27 Copynumber: 7.3 Consensus size: 27
51271985 TGGGCAAGTT
* *
51271995 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
51272022 GTAGAATTACCGAAATACCC-TGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*** *
51272048 GTAGAATTATTAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
51272075 GTAGAATTACCGAAATACCC-TGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
51272101 ATAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
* **
51272128 GTAGAAATACTAAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
51272155 GTAGAATAACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
51272182 GTAAAATTA
1 GTAGAATTA
51272191 TAATTTTGCC
Statistics
Matches: 145, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 47 0.32
27 98 0.68
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:51272896 original size:27 final size:26
Alignment explanation
Indices: 51272852--51272903 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
51272842 CTCACTGCAA
*
51272852 TCTGGTGGCCTCGACACATATATCTGT
1 TCTGGTGACCTCGACACA-ATATCTGT
* *
51272879 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGACACAATATCTG
51272904 GCAGTCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGACACAATATCTGT
Found at i:51274982 original size:43 final size:43
Alignment explanation
Indices: 51274916--51275173 Score: 340
Period size: 43 Copynumber: 6.0 Consensus size: 43
51274906 AGGTACAATA
* * * *
51274916 CCAACGTCCCTGACGTGGTCTTACATGTAATCTCATATCGACG
1 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
** * * * *
51274959 CCATTGTCCCAGACAG-GGTCTTACTCGTAAACGCATATAGATG
1 CCAACGTCCCAGAC-GTGGTCTTACACGTAATCACATATCGATG
*
51275002 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGAAG
1 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
* *
51275045 CCAACGTCCTAGACATGGTCTTACACGTAATCACATATCGATG
1 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
*
51275088 CCAACGTCCCAGACGTTGG-CTTACACGTAATCGCATATCGATG
1 CCAACGTCCCAGACG-TGGTCTTACACGTAATCACATATCGATG
* *
51275131 CCAACATCCCAGACGTGGTGTTACACGTAATCACATATCGATG
1 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
51275174 TCTATATAAA
Statistics
Matches: 186, Mismatches: 25, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
42 4 0.02
43 178 0.96
44 4 0.02
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (43 bp):
CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
Found at i:51280180 original size:29 final size:29
Alignment explanation
Indices: 51280107--51280182 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
51280097 TCCACCACTG
* * *
51280107 GTACATAGTACCTGATAAGTATAACACCG
1 GTACAAAGTACCTGATAAATATAACACCA
* * * *
51280136 GCACAGAGTGCTTGATAAATATAACACCA
1 GTACAAAGTACCTGATAAATATAACACCA
51280165 GTACAAAGTACCTGATAA
1 GTACAAAGTACCTGATAA
51280183 TTGTAATCAC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (29 bp):
GTACAAAGTACCTGATAAATATAACACCA
Found at i:51282407 original size:43 final size:43
Alignment explanation
Indices: 51282343--51282513 Score: 220
Period size: 43 Copynumber: 4.0 Consensus size: 43
51282333 TCTGAATTCA
* * ** *
51282343 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCTGATATCAT
1 TTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
51282385 TTCACCGATATTATAGCCTGCTAGGCCCGAGGCCCGATATTAT
1 TTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
51282428 CTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCAATATCAT
1 TTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
51282471 TTCACC-AGCATTATAGCCTGCTAGGCCCGAAGCCCGTATATCA
1 TTCACCGA-CATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
51282514 CATTACGATA
Statistics
Matches: 111, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
42 11 0.10
43 94 0.85
44 6 0.05
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (43 bp):
TTCACCGACATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:51312768 original size:21 final size:21
Alignment explanation
Indices: 51312744--51312784 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51312734 TATCCCTACA
* *
51312744 GGTGTGTTGGTTGGTATGGGT
1 GGTGTGCTGGCTGGTATGGGT
51312765 GGTGTGCTGGCTGGTATGGG
1 GGTGTGCTGGCTGGTATGGG
51312785 ATGGGCTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.05, G:0.54, T:0.37
Consensus pattern (21 bp):
GGTGTGCTGGCTGGTATGGGT
Found at i:51318117 original size:96 final size:95
Alignment explanation
Indices: 51317987--51318342 Score: 530
Period size: 96 Copynumber: 3.7 Consensus size: 95
51317977 TTAGGATTTT
* *
51317987 ATGTGATGAATGTGAACATG--CGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAA-ATGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
51318050 AGTGTATGTATGTGATAAGGCCGAATGGCCA
65 AGTGTATGTATGTGATAAGGCCGAATGGCCA
51318081 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAA-TGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
51318146 CATGCGTATG--TGTGATAAGGCCGAATGGCCA
65 -A-GTGTATGTATGTGATAAGGCCGAATGGCCA
51318177 ATGTGATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAA-TGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
51318240 AGTGTATGTATATGTGATAAGGCCGAATGGCCA
65 AGTGTATG--TATGTGATAAGGCCGAATGGCCA
* * *
51318273 ATGTGATGAATGTGAAA-GTATATATATATGATAAGGCCGAATGGCCAATGTGATGGAA-GTGGA
1 ATGTGATGAATGTGAAATGTATGTATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAA
51318336 AGTGTAT
65 AGTGTAT
51318343 AACTGTGATA
Statistics
Matches: 243, Mismatches: 7, Indels: 22
0.89 0.03 0.08
Matches are distributed among these distances:
92 6 0.02
93 2 0.01
94 61 0.25
96 164 0.67
97 4 0.02
98 6 0.02
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (95 bp):
ATGTGATGAATGTGAAATGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
GTGTATGTATGTGATAAGGCCGAATGGCCA
Found at i:51318134 original size:143 final size:143
Alignment explanation
Indices: 51317987--51318342 Score: 626
Period size: 143 Copynumber: 2.5 Consensus size: 143
51317977 TTAGGATTTT
51317987 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
51318052 TGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
66 TGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
51318117 GGCCGAATGGCCA
131 GGCCGAATGGCCA
51318130 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
51318195 TGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
66 TGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
51318260 GGCCGAATGGCCA
131 GGCCGAATGGCCA
*** * * *
51318273 ATGTGATGAATGTGAA-AGTATATATATATGATAAGGCCGAATGGCCAATGTGATGGAA-GTGGA
1 ATGTGATGAATGTGAACA-TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAA
51318336 AGTGTAT
64 AGTGTAT
51318343 AACTGTGATA
Statistics
Matches: 205, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
142 1 0.00
143 201 0.98
144 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (143 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAA
GGCCGAATGGCCA
Found at i:51318352 original size:47 final size:46
Alignment explanation
Indices: 51317987--51318354 Score: 499
Period size: 47 Copynumber: 7.7 Consensus size: 46
51317977 TTAGGATTTT
* *
51317987 ATGTGATGAATGTGAACATGCGTAT-GTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-A-GTGTATAATGTGATAAGGCCGAATGGCCA
*
51318034 ATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTAT-AATGTGATAAGGCCGAATGGCCA
51318081 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTA--TA-ATGTGATAAGGCCGAATGGCCA
* *
51318130 ATGTGATGAATGTGAACATGCGTAT-GTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-A-GTGTATAATGTGATAAGGCCGAATGGCCA
*
51318177 ATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTAT-AATGTGATAAGGCCGAATGGCCA
51318224 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTA--TA-ATGTGATAAGGCCGAATGGCCA
* *
51318273 ATGTGATGAATGTGAAAGTATATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATA-ATGTGATAAGGCCGAATGGCCA
*
51318320 ATGTGATGGAA-GTGGAAGTGTATAACTGTGATAAG
1 ATGTGAT-GAATGTGAAAGTGTATAA-TGTGATAAG
51318355 TCCCGAAGAA
Statistics
Matches: 294, Mismatches: 13, Indels: 28
0.88 0.04 0.08
Matches are distributed among these distances:
45 10 0.03
46 3 0.01
47 189 0.64
48 3 0.01
49 84 0.29
50 1 0.00
51 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (46 bp):
ATGTGATGAATGTGAAAGTGTATAATGTGATAAGGCCGAATGGCCA
Found at i:51320659 original size:28 final size:28
Alignment explanation
Indices: 51320586--51320738 Score: 182
Period size: 28 Copynumber: 5.5 Consensus size: 28
51320576 GAATACTTAA
* * * *
51320586 ATCTCACACACTTAGTGCCATATTCAAT
1 ATCTCGCACACTAAGTGCCATACTCGAT
* *
51320614 ATTTCGC-CACTAAGTGCCACACTCGAT
1 ATCTCGCACACTAAGTGCCATACTCGAT
* *
51320641 ATCTCCCACACTAAGTGCCATACTCGTT
1 ATCTCGCACACTAAGTGCCATACTCGAT
51320669 ATCTCGCACACTAAGTGCCATACTCGAT
1 ATCTCGCACACTAAGTGCCATACTCGAT
* ** *
51320697 ATCTCGCACTCTAAGTGGTATACTTGAT
1 ATCTCGCACACTAAGTGCCATACTCGAT
*
51320725 ATCTCACACACTAA
1 ATCTCGCACACTAA
51320739 CTATCGTACA
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 21 0.20
28 85 0.80
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (28 bp):
ATCTCGCACACTAAGTGCCATACTCGAT
Found at i:51322544 original size:20 final size:20
Alignment explanation
Indices: 51322478--51322544 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
51322468 ATTTTGATAA
* *
51322478 ACATGGTATGTATGATATGG
1 ACATGATATGTATGATATGC
*
51322498 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
51322518 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51322538 ACATGAT
1 ACATGAT
51322545 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51322623 original size:25 final size:24
Alignment explanation
Indices: 51322594--51322667 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 24
51322584 GAGGAAGTGT
51322594 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATA
*
51322618 ATAAAGGGCTTATGCCCCAGTTATT
1 A-AAAGGGCTTATGCCCCAGTTATA
*
51322643 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
51322668 TGATAAAGCA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
24 10 0.23
25 34 0.77
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATA
Found at i:51322895 original size:31 final size:31
Alignment explanation
Indices: 51322860--51322922 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
51322850 CGTTTACAGT
51322860 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
51322891 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51322922 A
1 A
51322923 GTCTGAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51332542 original size:20 final size:20
Alignment explanation
Indices: 51332517--51332574 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
51332507 AAGTTTAAGA
*
51332517 ACCATTCCATTTTCTTAGTT
1 ACCATTCCATTTACTTAGTT
*
51332537 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTAGTT
* *
51332557 TCCATTCCATTTGCTTAG
1 ACCATTCCATTTACTTAG
51332575 CATAAACTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.21, C:0.28, G:0.05, T:0.47
Consensus pattern (20 bp):
ACCATTCCATTTACTTAGTT
Found at i:51340693 original size:42 final size:42
Alignment explanation
Indices: 51340634--51340742 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
51340624 TGACATTAGG
* *
51340634 GTTATGAG-TTTACGTGTAAGACCGTATCTGAGATATGGCATC
1 GTTATGAGATTT-CGTGTAAGACCATATCTGAGACATGGCATC
* *
51340676 GTTATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATC
1 GTTATGAGATTTCGTGTAAGACCATATCTGAGACATGGCATC
* *
51340718 GATATGAGA-ATCGTGTAAGACCATA
1 GTTATGAGATTTCGTGTAAGACCATA
51340743 GCTAGTTTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 14 0.24
42 42 0.71
43 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (42 bp):
GTTATGAGATTTCGTGTAAGACCATATCTGAGACATGGCATC
Found at i:51345998 original size:27 final size:27
Alignment explanation
Indices: 51345967--51346135 Score: 196
Period size: 27 Copynumber: 6.2 Consensus size: 27
51345957 TAAATTGTAC
51345967 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51345994 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51346020 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51346048 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51346076 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51346103 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
51346130 AGCACT
1 AGCACT
51346136 GAGTTAAACT
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
27 98 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51346081 original size:82 final size:81
Alignment explanation
Indices: 51345968--51346123 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51345958 AAATTGTACA
* *
51345968 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
51346032 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51346049 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
51346114 TGCGAGTTGA
65 TGCGAATTGA
51346124 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51348212 original size:42 final size:42
Alignment explanation
Indices: 51348165--51348315 Score: 169
Period size: 42 Copynumber: 3.6 Consensus size: 42
51348155 TATGTGTTAA
* *
51348165 CGTGTAAGACCATATCTGGGATATGGCATCGTTATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATAT
* * *
51348207 CGTGTAAGACCATGTTTGGGACATGGCATCGATATGAGA-AT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATAT
* ** * * **
51348248 CGTGTAAAACCATAGATGGGCTATTGACATCGATATGAGATCC
1 CGTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATAT
*
51348291 CATGTAAGACCATATCTGGGATATG
1 CGTGTAAGACCATATCTGGGATATG
51348316 CCATTGGTGT
Statistics
Matches: 88, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
41 18 0.20
42 52 0.59
43 18 0.20
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATAT
Found at i:51350685 original size:46 final size:45
Alignment explanation
Indices: 51350616--51350791 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
51350606 TATTTGGGCA
51350616 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
51350662 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
51350709 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
51350755 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51350792 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:51350771 original size:93 final size:93
Alignment explanation
Indices: 51350612--51350784 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
51350602 GGGATATTTG
* ** *
51350612 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
51350677 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
51350705 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
51350770 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
51350785 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:51354014 original size:46 final size:45
Alignment explanation
Indices: 51353955--51354122 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 45
51353945 TGGTTGAGCA
51353955 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-G
* * ** * *
51354001 TCCGAACTTGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAT-TTATG-GA-T-GCGAAG
* * *
51354048 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-G
*
51354094 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTC
51354123 GCTTATGGGC
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 57 0.58
47 29 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAAG
Found at i:51354111 original size:93 final size:93
Alignment explanation
Indices: 51353952--51354123 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
51353942 GGATGGTTGA
* * *
51353952 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
51354017 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
51354045 GCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
51354109 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
51354124 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51360738 original size:49 final size:47
Alignment explanation
Indices: 51360564--51360886 Score: 565
Period size: 47 Copynumber: 6.8 Consensus size: 47
51360554 CCCTTCGGGA
* * * * *
51360564 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51360611 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51360658 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51360705 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51360754 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51360803 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51360850 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
51360887 AATCCTAAAT
Statistics
Matches: 269, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
47 173 0.64
49 96 0.36
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51360924 original size:96 final size:91
Alignment explanation
Indices: 51360621--51360905 Score: 353
Period size: 96 Copynumber: 3.0 Consensus size: 91
51360611 CTTATCACAT
51360621 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
* *
51360686 ATCACATCGGCCATTAGGCCTTATCACATAT-
66 ATCACATC-G--A--A-GCCTAATCAAATATA
51360717 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACAT
* *
51360782 TCATCACATCGGCCATTAGGCCTTATC--ACAT-
64 TCATCACATC-G--A--A-GCCTAATCAAATATA
51360813 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
*
51360878 ATCACATCGAATCCTAAATCAAAATATA
66 ATCACATCGAAGCCT-AATC-AAATATA
51360906 GATTTTCATG
Statistics
Matches: 178, Mismatches: 4, Indels: 17
0.89 0.02 0.09
Matches are distributed among these distances:
88 3 0.02
89 4 0.02
91 1 0.01
92 3 0.02
93 1 0.01
94 28 0.16
96 93 0.52
98 45 0.25
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.32
Consensus pattern (91 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
ATCACATCGAAGCCTAATCAAATATA
Found at i:51364765 original size:40 final size:40
Alignment explanation
Indices: 51364733--51365004 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
51364723 CCAGCATGAT
* * * *
51364733 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
51364773 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
51364813 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
51364853 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
51364893 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
51364933 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
51364973 TGCGCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
51365005 CTCAATTCTC
Statistics
Matches: 217, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:51366486 original size:47 final size:47
Alignment explanation
Indices: 51366417--51366690 Score: 476
Period size: 47 Copynumber: 5.8 Consensus size: 47
51366407 CCCTTCGGGA
* * * * *
51366417 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51366464 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51366511 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51366560 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51366607 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51366654 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
51366691 AATCCTAAAT
Statistics
Matches: 218, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 171 0.78
49 47 0.22
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51366580 original size:96 final size:96
Alignment explanation
Indices: 51366417--51366690 Score: 475
Period size: 96 Copynumber: 2.9 Consensus size: 96
51366407 CCCTTCGGGA
* * * *
51366417 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51366480 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
51366511 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51366576 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
51366607 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
51366670 ACTTTCACATTCATCACATCG
66 ACTTTCACATTCATCACATCG
51366691 AATCCTAAAT
Statistics
Matches: 172, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
94 85 0.49
95 1 0.01
96 86 0.50
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51366728 original size:143 final size:140
Alignment explanation
Indices: 51366428--51366690 Score: 429
Period size: 143 Copynumber: 1.9 Consensus size: 140
51366418 TTATCACATT
* * * *
51366428 TATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATATACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
51366493 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
66 TCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGG-CA-TAG
* *
51366558 GCCTTATCACATA
128 GCCTAATCAAATA
*
51366571 TATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATATACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
51366636 TCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCG
66 TCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCG
51366691 AATCCTAAAT
Statistics
Matches: 115, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
141 29 0.25
143 86 0.75
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (140 bp):
TATATACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCATAGGCC
TAATCAAATA
Found at i:51370621 original size:40 final size:40
Alignment explanation
Indices: 51370589--51370864 Score: 408
Period size: 40 Copynumber: 6.8 Consensus size: 40
51370579 CCAGCATGAT
* * * *
51370589 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
51370629 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
51370669 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
51370709 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
51370749 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
51370789 TGCTCTCTCTTCGGGACTTAGCCCGGATATATCGCTATCACGAA
1 TG----CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
51370833 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
51370865 CTCAATTCTC
Statistics
Matches: 215, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 178 0.83
44 37 0.17
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:51371072 original size:15 final size:15
Alignment explanation
Indices: 51371044--51371094 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
51371034 TTTTTTCTTC
51371044 TTCTTTTCAT-TTCAT
1 TTCTTTTC-TCTTCAT
51371059 TTCTTTTCTCTTCAT
1 TTCTTTTCTCTTCAT
* *
51371074 CTATTTTCTCTTC--
1 TTCTTTTCTCTTCAT
51371087 TTCTTTTC
1 TTCTTTTC
51371095 CCCCATAGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
13 6 0.19
14 1 0.03
15 24 0.77
ACGTcount: A:0.08, C:0.25, G:0.00, T:0.67
Consensus pattern (15 bp):
TTCTTTTCTCTTCAT
Found at i:51371081 original size:20 final size:21
Alignment explanation
Indices: 51371036--51371087 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
51371026 ATTCAGGTTT
* *
51371036 TTTTCTTCTTCTTTTCATTTCA
1 TTTTCTT-TTCTCTTCATCTCA
51371058 -TTTCTTTTCTCTTCATCT-A
1 TTTTCTTTTCTCTTCATCTCA
*
51371077 TTTTCTCTTCT
1 TTTTCTTTTCT
51371088 TCTTTTCCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 19 0.73
21 6 0.23
ACGTcount: A:0.08, C:0.25, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTCTTTTCTCTTCATCTCA
Found at i:51377454 original size:27 final size:27
Alignment explanation
Indices: 51377404--51377467 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
51377394 CAATCACTTG
* *
51377404 CCCACAAGGGCAAAACAGTCATTTAAC
1 CCCATAAGGGCAAAACAGTAATTTAAC
** *
51377431 ACCC-TAAGGGCAAAATGGTAATTTTAC
1 -CCCATAAGGGCAAAACAGTAATTTAAC
51377458 CCCATAAGGG
1 CCCATAAGGG
51377468 TATCTCGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.10
27 24 0.80
28 3 0.10
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (27 bp):
CCCATAAGGGCAAAACAGTAATTTAAC
Found at i:51377513 original size:54 final size:54
Alignment explanation
Indices: 51377463--51377588 Score: 189
Period size: 54 Copynumber: 2.3 Consensus size: 54
51377453 TTTACCCCAT
* * *
51377463 AAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTAC
1 AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTAC
* * *
51377517 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTAC
1 AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTAC
*
51377571 AAGGGTATTTCAATAATT
1 AAGGGTATTTCGATAATT
51377589 TTTTAAATCG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (54 bp):
AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTAC
Found at i:51377588 original size:27 final size:27
Alignment explanation
Indices: 51377447--51377581 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
51377437 AGGGCAAAAT
* * * *
51377447 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
51377474 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
51377501 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
51377528 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
51377555 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
51377582 AATAATTTTT
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:51379963 original size:15 final size:15
Alignment explanation
Indices: 51379940--51379970 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51379930 TCAAAAATTC
51379940 CAATACAAAACATAT
1 CAATACAAAACATAT
*
51379955 CAATCCAAAACATAT
1 CAATACAAAACATAT
51379970 C
1 C
51379971 TTTCATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:51381624 original size:18 final size:18
Alignment explanation
Indices: 51381601--51381638 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
51381591 CAAAATCACT
51381601 TAACAA-AATACTTATAAA
1 TAACAACAATACTT-TAAA
51381619 TAACAACTAATACTTTAAA
1 TAACAAC-AATACTTTAAA
51381638 T
1 T
51381639 TCATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (18 bp):
TAACAACAATACTTTAAA
Found at i:51384105 original size:35 final size:35
Alignment explanation
Indices: 51384065--51384223 Score: 192
Period size: 35 Copynumber: 4.5 Consensus size: 35
51384055 TTATGTACAT
51384065 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
51384100 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* ** * *
51384135 ATGTGATGTTATATTGAACTTGTATATTCAGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * *
51384170 ATATGATGATATATTGTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
51384205 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
51384224 CTTGAGTATT
Statistics
Matches: 102, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 102 1.00
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:51391349 original size:35 final size:35
Alignment explanation
Indices: 51391309--51391483 Score: 181
Period size: 35 Copynumber: 5.0 Consensus size: 35
51391299 GTATGTACAT
51391309 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
51391344 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * * *
51391379 ATTTGATGTTATATTGAGCTTGTATATTCGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * *
51391414 ATATGATGATATATTGTACTTGTATTTTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
51391449 ATGTGATGATATAATGAACATTG-AGTATTTGGCCA
1 ATGTGATGATATATTGAAC-TTGTA-TATTTGGCCA
51391484 TACAAGTAAG
Statistics
Matches: 113, Mismatches: 25, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
35 101 0.89
36 12 0.11
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:51396556 original size:26 final size:25
Alignment explanation
Indices: 51396527--51396584 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 25
51396517 ATTTACTAAA
51396527 ATACCCTAAGTATG-AAAATTACCATT
1 ATACCCT-AG-ATGCAAAATTACCATT
*
51396553 ATACCCCTAGGTGCAAAATTACCATT
1 ATA-CCCTAGATGCAAAATTACCATT
51396579 ATACCC
1 ATACCC
51396585 CTGGGTTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 5 0.17
26 20 0.69
27 4 0.14
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.28
Consensus pattern (25 bp):
ATACCCTAGATGCAAAATTACCATT
Found at i:51400021 original size:8 final size:8
Alignment explanation
Indices: 51400008--51400045 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
51399998 CTAGATCGGC
51400008 AAAAGCCG
1 AAAAGCCG
51400016 AAAAGCC-
1 AAAAGCCG
51400023 AAAAGCCG
1 AAAAGCCG
51400031 AAATA-CCG
1 AAA-AGCCG
51400039 AAAAGCC
1 AAAAGCC
51400046 AACATTTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 8 0.30
8 18 0.67
9 1 0.04
ACGTcount: A:0.53, C:0.26, G:0.18, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:51400528 original size:27 final size:28
Alignment explanation
Indices: 51400453--51400546 Score: 102
Period size: 27 Copynumber: 3.4 Consensus size: 28
51400443 GAGGGAGTGT
* * *
51400453 TCTGGTGGCTCTGTCACAAATATTTG-A
1 TCTGGTGGCTCTGCCAAAAATATCTGTA
* *
51400480 TATGGTGGCTCTGCCAAAAATATCTGTT
1 TCTGGTGGCTCTGCCAAAAATATCTGTA
* *
51400508 TCTGGTGGCTTTGCC-ATAATATCTGTA
1 TCTGGTGGCTCTGCCAAAAATATCTGTA
*
51400535 TCTGGTGACTCT
1 TCTGGTGGCTCT
51400547 ATCACAATAT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
27 42 0.76
28 13 0.24
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.38
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCAAAAATATCTGTA
Found at i:51400555 original size:27 final size:26
Alignment explanation
Indices: 51400498--51400565 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
51400488 CTCTGCCAAA
* * * *
51400498 AATATCTGTTTCTGGTGGCTTTGCCAT
1 AATATCTG-TTCTGGTGACTCTACCAC
*
51400525 AATATCTGTATCTGGTGACTCTATCAC
1 AATATCTGT-TCTGGTGACTCTACCAC
*
51400552 AATATATGTTCTGG
1 AATATCTGTTCTGG
51400566 CAGCCATGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (26 bp):
AATATCTGTTCTGGTGACTCTACCAC
Found at i:51403279 original size:43 final size:43
Alignment explanation
Indices: 51403218--51403302 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
51403208 GTCTAAAAAG
51403218 TACAGGGACTATTTTACAAGTTTCTCTTCCTCGATTTTTTACA
1 TACAGGGACTATTTTACAAGTTTCTCTTCCTCGATTTTTTACA
51403261 TACAGGGACTATTTTACAAGTTTCTCTTCCTCGATTTTTTAC
1 TACAGGGACTATTTTACAAGTTTCTCTTCCTCGATTTTTTAC
51403303 TCGTTCTTGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (43 bp):
TACAGGGACTATTTTACAAGTTTCTCTTCCTCGATTTTTTACA
Found at i:51411047 original size:39 final size:39
Alignment explanation
Indices: 51410997--51411243 Score: 311
Period size: 39 Copynumber: 6.3 Consensus size: 39
51410987 CAAGACTTTA
* *
51410997 AGCCCGGATATAATACCAGCA-GAAAGCCTGCGGGACTTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGGGAC-TT
* *
51411036 AGCCCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGGGAC-TT
* * * *
51411075 AGCCCAGATAAAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGGGACTT
* *
51411114 AACCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGGGACTT
* *
51411153 AGCCCGGATATAACACCAGCGC-AAATGCCTTTGGGACTT
1 AGCCCGGATATAACACCAGCACGAAA-GCCTTCGGGACTT
* *
51411192 AGCCCGGATATAACACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGGGACTT
*
51411231 AGCCCGGGTATAA
1 AGCCCGGATATAA
51411244 TTCTCCATTA
Statistics
Matches: 185, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.01
39 170 0.92
40 13 0.07
ACGTcount: A:0.30, C:0.29, G:0.23, T:0.18
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAAAGCCTTCGGGACTT
Found at i:51412428 original size:35 final size:35
Alignment explanation
Indices: 51412382--51412452 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
51412372 ACATAAAAAT
51412382 TTTACCTATGCATAACATTACTCATATTCCAATAC
1 TTTACCTATGCATAACATTACTCATATTCCAATAC
51412417 TTTACCTATGCATAACATTACTCATATTCCAATAC
1 TTTACCTATGCATAACATTACTCATATTCCAATAC
51412452 T
1 T
51412453 CATATTATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (35 bp):
TTTACCTATGCATAACATTACTCATATTCCAATAC
Found at i:51420639 original size:28 final size:28
Alignment explanation
Indices: 51420599--51420699 Score: 152
Period size: 27 Copynumber: 3.7 Consensus size: 28
51420589 CTTCAAATCC
*
51420599 ATGTAGCACTAAGTGTGCGAGTTTGACT
1 ATGTAGCACTAAGTGTGCGAGTTTGATT
51420627 ATGTAGCACTAAGTGTGCGA-TTTGATT
1 ATGTAGCACTAAGTGTGCGAGTTTGATT
*
51420654 ACGTAGCACTAAGTGTGCGAG-TTGATT
1 ATGTAGCACTAAGTGTGCGAGTTTGATT
* *
51420681 ATATAGCACTGAGTGTGCG
1 ATGTAGCACTAAGTGTGCG
51420700 GACTCAATAT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 47 0.70
28 20 0.30
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.32
Consensus pattern (28 bp):
ATGTAGCACTAAGTGTGCGAGTTTGATT
Found at i:51429671 original size:80 final size:79
Alignment explanation
Indices: 51429535--51429758 Score: 247
Period size: 80 Copynumber: 2.8 Consensus size: 79
51429525 TTGAATGCTG
* * * * *
51429535 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGA-TACTAAATCCGGGCTAAG-TCCCGAAGGCATT
51429598 TGTGCGAGATA-CAAA
64 TGTGCGAGATATCAAA
* *
51429613 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATT
* * *
51429678 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * * * * *
51429694 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
51429759 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
79 57 0.47
80 61 0.50
81 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:51429738 original size:39 final size:39
Alignment explanation
Indices: 51429535--51429756 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
51429525 TTGAATGCTG
* * * * *
51429535 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-TACTAAA
**
51429574 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
51429613 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
51429654 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
51429694 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
51429733 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51429757 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
39 58 0.37
40 94 0.60
41 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:51429776 original size:79 final size:80
Alignment explanation
Indices: 51429614--51429791 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
51429604 AGATACAAAT
* * * *
51429614 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
51429679 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
51429694 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
51429758 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
51429773 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51429792 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:51433674 original size:39 final size:40
Alignment explanation
Indices: 51433629--51433800 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
51433619 GCTCCTCGTT
* * *
51433629 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
51433669 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
51433708 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
51433748 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
51433788 CAAATGCCTTCGG
1 CAAATGCCTTCGG
51433801 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:51433729 original size:40 final size:39
Alignment explanation
Indices: 51433631--51433853 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
51433621 TCCTCGTTCA
* * * *
51433631 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
51433670 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
51433709 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
51433749 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
51433789 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
51433830 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51433854 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:51433813 original size:80 final size:79
Alignment explanation
Indices: 51433629--51433853 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
51433619 GCTCCTCGTT
* * * * *
51433629 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
51433693 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
51433708 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
51433773 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
51433788 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
51433852 GA
63 GA
51433854 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:51433862 original size:41 final size:41
Alignment explanation
Indices: 51433785--51433862 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51433775 TTTGTATCTC
* * *
51433785 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51433826 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51433863 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51440934 original size:40 final size:39
Alignment explanation
Indices: 51440832--51441052 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
51440822 TCCTCGTTCA
* * * *
51440832 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
51440871 AATGCCTTC-GGAC-TAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
51440908 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
51440948 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
51440988 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
51441029 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51441053 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
37 20 0.13
38 13 0.08
39 18 0.12
40 91 0.59
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:51440999 original size:80 final size:77
Alignment explanation
Indices: 51440830--51440999 Score: 207
Period size: 77 Copynumber: 2.2 Consensus size: 77
51440820 GCTCCTCGTT
* * *
51440830 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGACTAACCCGGATT
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGACTAACCCGGATT
51440895 TAATAACTCGCA
66 TAATAACTCGCA
* * * * *
51440907 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTC-GGAC-TAACCCGG
* *
51440972 AATTT-GTATCTCGCA
63 -ATTTAATAACTCGCA
51440987 CAAATGCCTTCGG
1 CAAATGCCTTCGG
51441000 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
77 35 0.45
78 8 0.10
79 3 0.04
80 28 0.36
81 4 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGACTAACCCGGATT
TAATAACTCGCA
Found at i:51441012 original size:80 final size:79
Alignment explanation
Indices: 51440830--51441052 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
51440820 GCTCCTCGTT
* * * *
51440830 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTC-GGAC-TAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
51440892 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
51440907 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
51440972 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
51440987 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
51441051 GA
63 GA
51441053 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
76 1 0.01
77 36 0.30
78 6 0.05
79 6 0.05
80 59 0.49
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:51441061 original size:41 final size:41
Alignment explanation
Indices: 51440984--51441061 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51440974 TTTGTATCTC
* * *
51440984 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51441025 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51441062 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51453309 original size:27 final size:27
Alignment explanation
Indices: 51453279--51453456 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51453269 ATATTGAGTC
* * * *
51453279 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51453306 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51453333 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51453361 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51453388 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51453415 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51453442 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51453457 GTACATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51453418 original size:82 final size:81
Alignment explanation
Indices: 51453300--51453455 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51453290 TGCTATATAA
* *
51453300 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51453365 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51453382 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51453446 CACTTAGTGC
65 CACTTAGTGC
51453456 TGTACATTTA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51456952 original size:24 final size:24
Alignment explanation
Indices: 51456925--51456981 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
51456915 CCCATATCCG
51456925 TCACCAGACTAAGGTTAAGAGGTA
1 TCACCAGACTAAGGTTAAGAGGTA
*
51456949 TCACCAGACTAGGGTTAAGAGGTA
1 TCACCAGACTAAGGTTAAGAGGTA
*
51456973 TTACCAGAC
1 TCACCAGAC
51456982 AAATCAGAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (24 bp):
TCACCAGACTAAGGTTAAGAGGTA
Found at i:51458424 original size:42 final size:43
Alignment explanation
Indices: 51458339--51458496 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
51458329 CCAACGTCTG
* * * *
51458339 AGACGTGGTCTTACAT-GTAATCGAATATCGATGCCACTGTCCC
1 AGACATGGTCTTAC-TCGAAATCAAATATCGATGCCAATGTCCC
51458382 AGACATGGTCTTACTCGAAATCAAATAT-GATGCCAATGTCCC
1 AGACATGGTCTTACTCGAAATCAAATATCGATGCCAATGTCCC
* * * *
51458424 AGAGATGGTCTTACACGTAAATCTCAA-ATCGATTCCAATG-CTCC
1 AGACATGGTCTTACTCG-AAATC-AAATATCGATGCCAATGTC-CC
* *
51458468 AGATGA-GGTCTTACAT-GAAATCACATATC
1 AGA-CATGGTCTTAC-TCGAAATCAAATATC
51458497 AAAAATCTTA
Statistics
Matches: 96, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
42 30 0.31
43 39 0.41
44 25 0.26
45 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
AGACATGGTCTTACTCGAAATCAAATATCGATGCCAATGTCCC
Found at i:51458470 original size:44 final size:42
Alignment explanation
Indices: 51458344--51458490 Score: 138
Period size: 42 Copynumber: 3.4 Consensus size: 42
51458334 GTCTGAGACG
* * * * *
51458344 TGGTCTTACATGTAATCGAATATCGATGCCACTGTCCCAGACA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGAGA
* *
51458387 TGGTCTTACTCGAAATCAAATATGATGCCAATGTCCCAGAGA
1 TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGAGA
*
51458429 TGGTCTTACACGTAAATCTCAAAT-CGATTCCAATG-CTCCAGATGA
1 TGGTCTTACACG-AAA--TCAAATACGATGCCAATGTC-CCAGA-GA
*
51458474 -GGTCTTACATGAAATCA
1 TGGTCTTACACGAAATCA
51458491 CATATCAAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
41 3 0.03
42 28 0.32
43 25 0.28
44 24 0.27
45 8 0.09
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGAGA
Found at i:51468605 original size:47 final size:46
Alignment explanation
Indices: 51468536--51468713 Score: 177
Period size: 47 Copynumber: 3.8 Consensus size: 46
51468526 TTTGATGCCC
* *
51468536 ATGCCATGTTCTAGACATGGTCTTACACTAGCTCATATCTCAAGT-C-G
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCT---GTGCTG
*
51468583 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCATATCTGTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG--CT--CATATCTGTGCTG
* *
51468633 ATGCCATGTCCCAGACACGGTCTTACACTAGCTC-TCATAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-AT-CTGT-GCTG
*
51468681 ATG-CATGTCCCAGGCAT-GTCTTACACTAGCTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
51468714 CAATAGCCCA
Statistics
Matches: 113, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
45 1 0.01
46 18 0.16
47 43 0.38
48 11 0.10
49 3 0.03
50 30 0.27
51 7 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTGTGCTG
Found at i:51468656 original size:50 final size:47
Alignment explanation
Indices: 51468582--51468712 Score: 167
Period size: 50 Copynumber: 2.7 Consensus size: 47
51468572 ATCTCAAGTC
* *
51468582 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCAT-ATCTGTGCT
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCTCT--CATAATGTG-GCT
51468632 GATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCATAATGTGGCT
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATAATGTGGCT
* *
51468680 GATG-CATGTCCCAGGCATGTCTTACACTAGCTC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTC
51468713 ACAATAGCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
46 15 0.20
47 12 0.16
48 10 0.13
49 4 0.05
50 34 0.45
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATAATGTGGCT
Found at i:51468806 original size:20 final size:21
Alignment explanation
Indices: 51468781--51468827 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
51468771 AATTCTACTA
*
51468781 TCTCATTT-ATCATCATGCAT
1 TCTCATTTCACCATCATGCAT
51468801 TCTCATTTCCACCATCATGCAT
1 TCTCATTT-CACCATCATGCAT
51468823 T-TCAT
1 TCTCAT
51468828 GATATATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 4 0.17
22 12 0.50
ACGTcount: A:0.23, C:0.30, G:0.04, T:0.43
Consensus pattern (21 bp):
TCTCATTTCACCATCATGCAT
Found at i:51476540 original size:39 final size:40
Alignment explanation
Indices: 51476363--51476540 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
51476353 CGGATGGTAA
* *
51476363 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
51476403 CCGGGATAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51476443 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51476483 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
51476523 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51476541 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 109 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51484399 original size:40 final size:40
Alignment explanation
Indices: 51484341--51484518 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
51484331 CGGATGGTAA
*
51484341 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
* * *
51484381 CTGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
51484421 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
* * *
51484461 CCGGGCTAAGTTCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
*
51484501 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51484519 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
39 16 0.13
40 105 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:51492106 original size:20 final size:20
Alignment explanation
Indices: 51492081--51492118 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51492071 CACTTGACAC
51492081 AGGGGC-ACACGCCCTGTGCG
1 AGGGGCAACACG-CCTGTGCG
51492101 AGGGGCAACACGCCTGTG
1 AGGGGCAACACGCCTGTG
51492119 TGACCAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.32, G:0.39, T:0.11
Consensus pattern (20 bp):
AGGGGCAACACGCCTGTGCG
Done.