Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 178 of 316
Found at i:57441927 original size:47 final size:47
Alignment explanation
Indices: 57441848--57442041 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
57441838 CATACATATT
* * *
57441848 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
57441895 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
57441942 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
57441989 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
57442036 TCACAT
1 TCACAT
57442042 AAATCCTAAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:57441968 original size:22 final size:22
Alignment explanation
Indices: 57441941--57442012 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
57441931 GCTCACATTC
57441941 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
57441963 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
57441987 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
57442010 ATC
1 ATC
57442013 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:57441972 original size:94 final size:94
Alignment explanation
Indices: 57441801--57442041 Score: 299
Period size: 94 Copynumber: 2.6 Consensus size: 94
57441791 ATACATATTT
* * * *
57441801 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
*
57441863 GGCTTTACCACATATATGCATGTTCACATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
57441896 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
57441961 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
57441990 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
57442042 AAATCCTAAA
Statistics
Matches: 128, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
93 1 0.01
94 94 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:57450427 original size:24 final size:22
Alignment explanation
Indices: 57450395--57450440 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
57450385 AATACACTCA
* *
57450395 CTTTGCTCTCCTATTCTTTTTATT
1 CTTTACTCT-CTA-TCTATTTATT
57450419 CTTTACTCTCTATCTATTTATT
1 CTTTACTCTCTATCTATTTATT
57450441 TTATAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 3 0.15
24 8 0.40
ACGTcount: A:0.13, C:0.24, G:0.02, T:0.61
Consensus pattern (22 bp):
CTTTACTCTCTATCTATTTATT
Found at i:57450968 original size:3 final size:3
Alignment explanation
Indices: 57450925--57450953 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
57450915 AGATCACTCA
57450925 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
57450954 TTTTACTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:57461786 original size:29 final size:29
Alignment explanation
Indices: 57461754--57461842 Score: 124
Period size: 29 Copynumber: 3.1 Consensus size: 29
57461744 ACACTGTCCA
57461754 GCACACGGTCTGTCACACGACTGTGTGTC
1 GCACACGGTCTGTCACACGACTGTGTGTC
* *
57461783 GCACACGGCCTGTCACATGACTGTGTGTC
1 GCACACGGTCTGTCACACGACTGTGTGTC
* * * *
57461812 GCACACGATCTATCACACAACCGTGTGTC
1 GCACACGGTCTGTCACACGACTGTGTGTC
57461841 GC
1 GC
57461843 TTACAACCTA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.20, C:0.33, G:0.25, T:0.22
Consensus pattern (29 bp):
GCACACGGTCTGTCACACGACTGTGTGTC
Found at i:57464556 original size:46 final size:48
Alignment explanation
Indices: 57464453--57464724 Score: 274
Period size: 46 Copynumber: 5.7 Consensus size: 48
57464443 TCATTGGTGT
* * * *
57464453 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
* * *
57464501 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-A
*
57464548 -AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGG-CTACGAGAT--
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGA
* * * * *
57464591 GTGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAC-GGATATGCAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATG--A
* *
57464641 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGA
* *
57464690 TAGCCAGTGTAAGACCATGTCTGGGATATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
57464725 AACAACTTAC
Statistics
Matches: 187, Mismatches: 24, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 61 0.33
47 15 0.08
48 13 0.07
49 33 0.18
50 35 0.19
51 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
Found at i:57474900 original size:20 final size:21
Alignment explanation
Indices: 57474862--57474900 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
57474852 TCGAGTTGGT
*
57474862 CACATGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
57474883 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
57474901 GTTTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:57484971 original size:43 final size:41
Alignment explanation
Indices: 57484918--57485069 Score: 124
Period size: 43 Copynumber: 3.6 Consensus size: 41
57484908 GTCTGAGACA
* *
57484918 TCGTATAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGATT-AGATT
* ** *
57484960 TACGTATAAGACCATGTCTGGAACATTGGCATCGAATTCGATT
1 T-CGTATAAGACCATGTCTGGGACACAGGCATCG-ATTAGATT
* * * * *
57485003 TCGTGTAAGACCCTGTCTAGGACAGAGGCATCGATATTGAATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGAT-TAG-ATT
* * * *
57485046 ACATGTAAGACCACGTCTGGGACA
1 TCGTATAAGACCATGTCTGGGACA
57485070 TCGGCATTGT
Statistics
Matches: 88, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.02
42 29 0.33
43 54 0.61
44 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (41 bp):
TCGTATAAGACCATGTCTGGGACACAGGCATCGATTAGATT
Found at i:57485076 original size:85 final size:85
Alignment explanation
Indices: 57484918--57485076 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 85
57484908 GTCTGAGACA
* * * * *
57484918 TCGTATAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGAA
1 TCGTATAAGACCCTGTCTAGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTGGAA
*
57484983 CATTGGCATCGAATTCGATT
66 CATCGGCATCGAATTCGATT
* * *
57485003 TCGTGTAAGACCCTGTCTAGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTATAAGACCCTGTCTAGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACGTCTGG
*
57485066 GACATCGGCAT
64 AACATCGGCAT
57485077 TGTACTTAGT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 56 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (85 bp):
TCGTATAAGACCCTGTCTAGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTGGAA
CATCGGCATCGAATTCGATT
Found at i:57486408 original size:47 final size:47
Alignment explanation
Indices: 57486312--57486464 Score: 154
Period size: 47 Copynumber: 3.3 Consensus size: 47
57486302 GTTACATCTG
* * *
57486312 GGACATGCATCGGCC--GCATTATGAGTA-CTAGTGTAAGACCATGTTTA
1 GGACATGCATCGGCCTAG-ATGATGA-TAGCCAGTGTAAGA-CATGTCTA
* *
57486359 GGACATGGCATCGGCGTAGA-GATTAGT-GCCAGTGTAAGACATGTCTA
1 GGACAT-GCATCGGCCTAGATGATGA-TAGCCAGTGTAAGACATGTCTA
* * *
57486406 GGACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACGTGTCTG
1 GGACATGCATCGGCCTAGATGATGATAGCCAGTGTAAGACATGTCTA
57486453 GGACATGCATCG
1 GGACATGCATCG
57486465 ATTAAGACTC
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
46 12 0.13
47 53 0.59
48 23 0.26
49 1 0.01
50 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (47 bp):
GGACATGCATCGGCCTAGATGATGATAGCCAGTGTAAGACATGTCTA
Found at i:57490785 original size:21 final size:20
Alignment explanation
Indices: 57490759--57490802 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
57490749 TAAAAAATTC
57490759 TAAAAAATACAAAAATTATTT
1 TAAAAAAT-CAAAAATTATTT
* *
57490780 TAAAAAATTAAAATTTATTT
1 TAAAAAATCAAAAATTATTT
57490800 TAA
1 TAA
57490803 GATTAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAAAATCAAAAATTATTT
Found at i:57490792 original size:20 final size:20
Alignment explanation
Indices: 57490759--57490815 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 20
57490749 TAAAAAATTC
*
57490759 TAAAAAATACAAAAATTATTT
1 TAAAAAAT-TAAAAATTATTT
*
57490780 TAAAAAATTAAAATTTATTT
1 TAAAAAATTAAAAATTATTT
*
57490800 T--AAGATTAAAAATTAT
1 TAAAAAATTAAAAATTAT
57490816 AAAAAATTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 13 0.41
20 11 0.34
21 8 0.25
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (20 bp):
TAAAAAATTAAAAATTATTT
Found at i:57491616 original size:19 final size:19
Alignment explanation
Indices: 57491592--57491632 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
57491582 CATTGTTGGG
57491592 AAAAAACACTTTTGAGACA
1 AAAAAACACTTTTGAGACA
* *
57491611 AAAAAATACTTTTGAGATA
1 AAAAAACACTTTTGAGACA
57491630 AAA
1 AAA
57491633 TCATTCTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.24
Consensus pattern (19 bp):
AAAAAACACTTTTGAGACA
Found at i:57496109 original size:19 final size:18
Alignment explanation
Indices: 57496082--57496125 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
57496072 TCATTCAAGT
*
57496082 TTCACATCTCAATTTATCA
1 TTCATATCTC-ATTTATCA
*
57496101 TTCATATCTCATTTCTCA
1 TTCATATCTCATTTATCA
57496119 TCTCATA
1 T-TCATA
57496126 ATCTTTTCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (18 bp):
TTCATATCTCATTTATCA
Found at i:57496119 original size:18 final size:18
Alignment explanation
Indices: 57496082--57496137 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
57496072 TCATTCAAGT
* *
57496082 TTCACATCTCAATTTATCA
1 TTCATATCTC-ATTTCTCA
57496101 TTCATATCTCATTTCTCA
1 TTCATATCTCATTTCTCA
57496119 TCTCATAATCT--TTTCTCA
1 T-TCAT-ATCTCATTTCTCA
57496137 T
1 T
57496138 ATTTTTTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 16 0.48
19 13 0.39
20 4 0.12
ACGTcount: A:0.25, C:0.27, G:0.00, T:0.48
Consensus pattern (18 bp):
TTCATATCTCATTTCTCA
Found at i:57499599 original size:20 final size:20
Alignment explanation
Indices: 57499561--57499602 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
57499551 AATTGAGGTT
* * *
57499561 TTGAATTGTGTTTCTAATGA
1 TTGAATTGTATCTCAAATGA
57499581 TTGAATTGTATCTCAAATGA
1 TTGAATTGTATCTCAAATGA
57499601 TT
1 TT
57499603 TAGATTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.48
Consensus pattern (20 bp):
TTGAATTGTATCTCAAATGA
Found at i:57501677 original size:24 final size:24
Alignment explanation
Indices: 57501645--57501694 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
57501635 GGAAAAAGAG
57501645 TACACATATCTATAATACGCATAA
1 TACACATATCTATAATACGCATAA
57501669 TACACATATCTATAATACGCATAA
1 TACACATATCTATAATACGCATAA
57501693 TA
1 TA
57501695 TGCTGCCCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (24 bp):
TACACATATCTATAATACGCATAA
Found at i:57506258 original size:31 final size:31
Alignment explanation
Indices: 57506220--57506280 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
57506210 AAAATAACAT
57506220 AATATCATCATCTTCCTTAAGTGATTAGCAC
1 AATATCATCATCTTCCTTAAGTGATTAGCAC
57506251 AATATCATCATCTTCCTTAAGTGATTAGCA
1 AATATCATCATCTTCCTTAAGTGATTAGCA
57506281 TCGAAAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (31 bp):
AATATCATCATCTTCCTTAAGTGATTAGCAC
Found at i:57508610 original size:11 final size:11
Alignment explanation
Indices: 57508594--57508622 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
57508584 AAAAAAATTC
57508594 AAAGTTTTGTG
1 AAAGTTTTGTG
57508605 AAAGTTTTGTG
1 AAAGTTTTGTG
57508616 AAAGTTT
1 AAAGTTT
57508623 CTTAAGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.45
Consensus pattern (11 bp):
AAAGTTTTGTG
Found at i:57510303 original size:23 final size:22
Alignment explanation
Indices: 57510272--57510316 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
57510262 AGCAAAGAGA
*
57510272 AGAAGAGAAAAAGAAAGAAAAGG
1 AGAAAAGAAAAAG-AAGAAAAGG
*
57510295 AGAAAAGAAGAAGAAGAAAAGG
1 AGAAAAGAAAAAGAAGAAAAGG
57510317 GTTTTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (22 bp):
AGAAAAGAAAAAGAAGAAAAGG
Found at i:57510640 original size:349 final size:347
Alignment explanation
Indices: 57509971--57510663 Score: 1109
Period size: 353 Copynumber: 2.0 Consensus size: 347
57509961 AAATTTAGGG
57509971 TTTTTTACAAAAATAAGACAAAAAAATAAAATAATACTAAAATAGTATAACAAAAAAAGTATGTA
1 TTTTTTACAAAAATAAGACAAAAAAATAAAATAATACTAAAATAGTATAACAAAAAAAGTATGTA
* * *
57510036 CCAAAATGGTACATCCTAGGGTGGTGTCGCCTATGGCAGTGGCGTGACCACCCTGGTCTGACATT
66 CCAAAATGGTACATCCCAAGGTGGTGCCGCCTATGGCAGTGGCGTGACCACCCTGGTCTGACATT
* * *
57510101 TCCTCTGCCATTTTCTGTTTAAAAAAAAGTGAAAAATAAAAAAAAAATTGAAAAAAAATGGATGG
131 TCCTCTGCCATTTTCTATTTAAAAAAAAGTGAAAAAAAAAAAAAAAATTGAAAAAAAAGGGATGG
57510166 AGGGGGTGCCAGAGGAAGCACCGATTGTGCCTCTGGCACAGGCGGCACCTAAGCAGTATAAAAAT
196 AGGGGGTGCCAGAGGAAGCACCGATTGTGCCTCTGGCACAGGCGGCACCTAAGCAGTATAAAAAT
* *
57510231 TGAAGTTGCAACTCCGGAAGCAAGAAGCAGCAGCAAAGAGAAGAAGAGAAAAAGAAAGAAAAGGA
261 TCAAGCTGCAACTCCGGAAGCAAGAAGCAGCAGCAAAGAGAAGAAGAG--AAAGAAAGAAAAGGA
57510296 GAAAAGAAGAAGAAGAAAAGGGTT
324 GAAAAGAAGAAGAAGAAAAGGGTT
* *
57510320 TTTTTTACAAAAATAAGACAAAAAAATAAAATAATACTAAAATAGTATTACAGAAAAAGTATGTA
1 TTTTTTACAAAAATAAGACAAAAAAATAAAATAATACTAAAATAGTATAACAAAAAAAGTATGTA
* *
57510385 CCAAAATGGTACATCCCAAGGTGGTGCCGCCTATGGCAGTGGCGTGACCACCTTGGTCTGATATT
66 CCAAAATGGTACATCCCAAGGTGGTGCCGCCTATGGCAGTGGCGTGACCACCCTGGTCTGACATT
*
57510450 TCCTCTGCCATTTTCTATTTATAAAAAAGTGAACACGAAAAAAAATAAAAATAT-AAAAAAAAGG
131 TCCTCTGCCATTTTCTATTTAAAAAAAAGTGAA-A--AAAAAAAA-AAAAAT-TGAAAAAAAAGG
** * * *
57510514 GATGGAGGGGGTGCCAGAGGCGGCATCGGTTGTTCCTCTGGCACAGGCGGCACCTAAGCAGTATA
191 GATGGAGGGGGTGCCAGAGGAAGCACCGATTGTGCCTCTGGCACAGGCGGCACCTAAGCAGTATA
**
57510579 AAAATTCAAGCTGCAACTCCGGAAGCAAGAAGCAGCAGCAATTAGAAGAAGAGAAAAAGAAAGAA
256 AAAATTCAAGCTGCAACTCCGGAAGCAAGAAGCAGCAGCAAAGAGAAGAAGAG--AAAGAAAGAA
*
57510644 AAGGAGAAGAGAAGAAGAAG
319 AAGGAGAAAAGAAGAAGAAG
57510664 GATGAGGAGG
Statistics
Matches: 318, Mismatches: 21, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
349 154 0.48
350 1 0.00
352 7 0.02
353 155 0.49
354 1 0.00
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (347 bp):
TTTTTTACAAAAATAAGACAAAAAAATAAAATAATACTAAAATAGTATAACAAAAAAAGTATGTA
CCAAAATGGTACATCCCAAGGTGGTGCCGCCTATGGCAGTGGCGTGACCACCCTGGTCTGACATT
TCCTCTGCCATTTTCTATTTAAAAAAAAGTGAAAAAAAAAAAAAAAATTGAAAAAAAAGGGATGG
AGGGGGTGCCAGAGGAAGCACCGATTGTGCCTCTGGCACAGGCGGCACCTAAGCAGTATAAAAAT
TCAAGCTGCAACTCCGGAAGCAAGAAGCAGCAGCAAAGAGAAGAAGAGAAAGAAAGAAAAGGAGA
AAAGAAGAAGAAGAAAAGGGTT
Found at i:57510651 original size:23 final size:24
Alignment explanation
Indices: 57510625--57510695 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 24
57510615 AGCAATTAGA
57510625 AGAAGAGAAAAAGAA-AGAAAAGG
1 AGAAGAGAAAAAGAAGAGAAAAGG
* **
57510648 AGAAGAGAAGAAGAAGGATGAGGAGG
1 AGAAGAGAAAAAGAA-GA-GAAAAGG
*
57510674 AGAAG-GAAAAAGAATAGAAAAG
1 AGAAGAGAAAAAGAAGAGAAAAG
57510696 AAAGGTATAT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
23 18 0.47
24 1 0.03
25 9 0.24
26 10 0.26
ACGTcount: A:0.62, C:0.00, G:0.35, T:0.03
Consensus pattern (24 bp):
AGAAGAGAAAAAGAAGAGAAAAGG
Found at i:57510798 original size:13 final size:13
Alignment explanation
Indices: 57510780--57510811 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
57510770 TTTTTTGTTG
57510780 TTAGTTATTATTA
1 TTAGTTATTATTA
57510793 TTAGTTATTATTA
1 TTAGTTATTATTA
57510806 TT-GTTA
1 TTAGTTA
57510812 GTAAAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.62
Consensus pattern (13 bp):
TTAGTTATTATTA
Found at i:57510805 original size:16 final size:17
Alignment explanation
Indices: 57510779--57510813 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
57510769 TTTTTTTGTT
57510779 GTTAGTTATTATTATTA
1 GTTAGTTATTATTATTA
*
57510796 GTTA-TTATTATTGTTA
1 GTTAGTTATTATTATTA
57510812 GT
1 GT
57510814 AAAAAACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (17 bp):
GTTAGTTATTATTATTA
Found at i:57510827 original size:39 final size:39
Alignment explanation
Indices: 57510784--57510966 Score: 217
Period size: 39 Copynumber: 4.7 Consensus size: 39
57510774 TTGTTGTTAG
*
57510784 TTATTATTATTAGTTATTATTATTGTTAGTAAAAAACTA
1 TTATTATTATTAGTTATTATTATTGTTAGTAAAAAACCA
** * *
57510823 TTATTAGGATT-GTTGGTTATTATTGTTAGTAAAAAACCC
1 TTATTATTATTAGTT-ATTATTATTGTTAGTAAAAAACCA
* * *
57510862 TAATTATTGTTAGTTATTATTATTGTTAGTAAAAAACTA
1 TTATTATTATTAGTTATTATTATTGTTAGTAAAAAACCA
** * *
57510901 TTATTAGGATT-GTTGGTTATTATTGTTAGTAAAAAACCC
1 TTATTATTATTAGTT-ATTATTATTGTTAGTAAAAAACCA
*
57510940 TAATTATTATTAGTTATTATTATTGTT
1 TTATTATTATTAGTTATTATTATTGTT
57510967 GATTTGTATT
Statistics
Matches: 117, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
38 6 0.05
39 105 0.90
40 6 0.05
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (39 bp):
TTATTATTATTAGTTATTATTATTGTTAGTAAAAAACCA
Found at i:57510868 original size:78 final size:78
Alignment explanation
Indices: 57510786--57510966 Score: 353
Period size: 78 Copynumber: 2.3 Consensus size: 78
57510776 GTTGTTAGTT
57510786 ATTATTATTAGTTATTATTATTGTTAGTAAAAAACTATTATTAGGATTGTTGGTTATTATTGTTA
1 ATTATTATTAGTTATTATTATTGTTAGTAAAAAACTATTATTAGGATTGTTGGTTATTATTGTTA
57510851 GTAAAAAACCCTA
66 GTAAAAAACCCTA
*
57510864 ATTATTGTTAGTTATTATTATTGTTAGTAAAAAACTATTATTAGGATTGTTGGTTATTATTGTTA
1 ATTATTATTAGTTATTATTATTGTTAGTAAAAAACTATTATTAGGATTGTTGGTTATTATTGTTA
57510929 GTAAAAAACCCTA
66 GTAAAAAACCCTA
57510942 ATTATTATTAGTTATTATTATTGTT
1 ATTATTATTAGTTATTATTATTGTT
57510967 GATTTGTATT
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 101 1.00
ACGTcount: A:0.34, C:0.04, G:0.13, T:0.49
Consensus pattern (78 bp):
ATTATTATTAGTTATTATTATTGTTAGTAAAAAACTATTATTAGGATTGTTGGTTATTATTGTTA
GTAAAAAACCCTA
Found at i:57512784 original size:20 final size:20
Alignment explanation
Indices: 57512759--57512799 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
57512749 ATAGCATGAA
57512759 TATATTAGTGGATTACACAG
1 TATATTAGTGGATTACACAG
57512779 TATATTAGTGGATTACACAG
1 TATATTAGTGGATTACACAG
57512799 T
1 T
57512800 TGTAGTGCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.37
Consensus pattern (20 bp):
TATATTAGTGGATTACACAG
Found at i:57516925 original size:49 final size:49
Alignment explanation
Indices: 57516869--57517424 Score: 884
Period size: 49 Copynumber: 11.6 Consensus size: 49
57516859 TATTTGAATA
57516869 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
57516918 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
57516967 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
57517014 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
57517063 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
57517112 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
57517159 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
57517208 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
57517257 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
57517304 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * * *
57517351 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
57517398 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
57517425 TCCCGAAGGG
Statistics
Matches: 481, Mismatches: 20, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
47 230 0.48
48 1 0.00
49 250 0.52
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:57517002 original size:96 final size:97
Alignment explanation
Indices: 57516869--57517424 Score: 887
Period size: 96 Copynumber: 5.8 Consensus size: 97
57516859 TATTTGAATA
*
57516869 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
57516934 TATATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATATGTGATAAGGCCTAATGGCCGATGTGATG
57516967 AATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
57517031 ATATGTGATAAGGCCGAATGGCCAATGTGATG
66 ATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
57517063 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
57517126 TATATGTGATAAGGCCGAATGGCCAATGTGATG
65 TATATGTGATAAGGCCTAATGGCCGATGTGATG
57517159 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
57517224 TATATGTGATAAGGCCTAATGGCCGATGTGATG
65 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
57517257 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
57517319 ATATGTGATAAGGCCTAATGGCCGATGTGATG
66 ATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
57517351 AATGTGAAAGTG-TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-
1 AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
57517414 A-ATGTGATAAG
66 ATATGTGATAAG
57517425 TCCCGAAGGG
Statistics
Matches: 432, Mismatches: 20, Indels: 16
0.92 0.04 0.03
Matches are distributed among these distances:
94 96 0.22
95 1 0.00
96 233 0.54
98 102 0.24
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (97 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:57517132 original size:145 final size:145
Alignment explanation
Indices: 57516869--57517424 Score: 958
Period size: 145 Copynumber: 3.9 Consensus size: 145
57516859 TATTTGAATA
*
57516869 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
57516934 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
57516999 ATGGCCAATGTGATG
131 ATGGCCAATGTGATG
57517014 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
57517079 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
57517144 ATGGCCAATGTGATG
131 ATGGCCAATGTGATG
57517159 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
57517224 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* *
57517289 ATAGCCGATGTGATG
131 ATGGCCAATGTGATG
* *
57517304 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * * * * * *
57517365 TATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57517425 TCCCGAAGGG
Statistics
Matches: 397, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
141 54 0.14
143 45 0.11
145 298 0.75
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTGATG
Found at i:57519113 original size:26 final size:26
Alignment explanation
Indices: 57519084--57519167 Score: 82
Period size: 26 Copynumber: 3.1 Consensus size: 26
57519074 AGTTTGTCCC
*
57519084 AATTAGATTAATGTTGTAATGTGTTT
1 AATTAGATTAATGTTGTAATGTATTT
*
57519110 AATTA-ATGTTCCAAT-TAGATTAATGTATTT
1 AATTAGA--TT--AATGTTG--TAATGTATTT
57519140 AATTAGATTAATGTTGTAATGTATTT
1 AATTAGATTAATGTTGTAATGTATTT
57519166 AA
1 AA
57519168 GGTTTGTTCC
Statistics
Matches: 47, Mismatches: 3, Indels: 16
0.71 0.05 0.24
Matches are distributed among these distances:
25 1 0.02
26 17 0.36
27 5 0.11
28 4 0.09
29 5 0.11
30 14 0.30
31 1 0.02
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (26 bp):
AATTAGATTAATGTTGTAATGTATTT
Found at i:57521438 original size:152 final size:152
Alignment explanation
Indices: 57521088--57522839 Score: 2773
Period size: 151 Copynumber: 11.6 Consensus size: 152
57521078 ATTTATTCAA
** *
57521088 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTTAAAGTATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* *
57521153 CGTATTTTA-TTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTGTTTTTT-
66 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
*
57521216 ATATTAATTTAGTAAATAACCT
131 ATATTAATTTAGTAAATAACCC
* * *
57521238 TGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCGAATTTTATTTTTTAAAATATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* *
57521303 CGTATTTTATTTTTTATATTATTTTAGTACATAATGCTTCAAATGTATTATTTTAGTGTTTTTTA
66 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
57521368 ATATTAATTTAGTAAATAACCC
131 ATATTAATTTAGTAAATAACCC
* ** * * *
57521390 TGATTTTAGCTTTTTATTTGTATTTTTAAAATTTTTAGATTTCATTTTTTAAAATATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* *
57521455 CATATTTTATTTTTTATAGTATTTTAGTACATAATGTTTCAAATATATTATTTTAGTGTTTTTT-
66 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
*
57521519 ATATTAATTTAGTAAATAACTC
131 ATATTAATTTAGTAAATAACCC
* *
57521541 TAATTTTGGCCATTTGTTTGTATTTTTAAAATTTTTGGATTTTA-TTTTTAAAATATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* *
57521605 CGTATTTTATTTTTTTATATTATTTTAGTAAATAATGTTTCAAATGTATTATTTTAGT-TTTTTT
66 CATATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTT
*
57521669 AATATTAATTTAGTAAATAACTC
130 AATATTAATTTAGTAAATAACCC
* ** *
57521692 TAATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTTAAAATATA-T-TATT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* * *
57521755 --T-TTTTA--TTTTATATTATTTTAGTATATAATGTTTTAAATGTATTATTTTAGCGTTTTTTA
66 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
57521815 ATATTAATTTAGTAAATAACCC
131 ATATTAATTTAGTAAATAACCC
57521837 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* *
57521902 CGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTA
66 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
* *
57521967 ATATTAATTTATTAAATAATCC
131 ATATTAATTTAGTAAATAACCC
*
57521989 TTATTTTGGCCCTTTGTTTGTATTTTTAAAA-TTTTGGATTTTATTTTTTAAAATATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* *
57522053 CATATTTTATTTTTTATATTATTTTAGTACATAATTTTTCAAATATATTATTTTAGTG-TTTTTA
66 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
57522117 ATATTAATTTAGTAAATAACCC
131 ATATTAATTTAGTAAATAACCC
* * ***
57522139 TTATTTTGGCCCTTTGTTTGTATTTTTAGAATTTTCAAATTTTATTTTTTAAAATATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* *
57522204 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAATATTTTTT-
66 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
57522268 ATATTAATTTAGTAAATAACCC
131 ATATTAATTTAGTAAATAACCC
* *
57522290 TGATTTTGGCCCTTTATTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATATTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
** *
57522355 TGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTT
66 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT-GTTTTTT
* *
57522420 AATATTAATTTATTAAATAATCC
130 AATATTAATTTAGTAAATAACCC
* *
57522443 TTATTTTGGCCCTTTGTTTGTATTTTTAAAA-TTTCGGATTTTATTTTTTAAAATATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* *
57522507 CATATTTTATTTTTTTATATTATTTTAGTACATAATTTTTCAAATATATTATTTTAGTGTTTTTT
66 CATATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTT
57522572 AATATTAATTTAGTAAATAACCC
130 AATATTAATTTAGTAAATAACCC
* * * *
57522595 TTATTTTGGCCCTTTGTTTGTATTTTTAGAATTTTCGAATTTTATTTTTTAAAATATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
* * *
57522660 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTC-AATGTATTATTTTAATATTTTTTT
66 CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
57522724 ATATTAATTTAGTAAATAACCC
131 ATATTAATTTAGTAAATAACCC
*
57522746 TGATTTTGGCCCTTTATTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
1 TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
57522811 CATATTTTATTTTTTATATTATTTTAGTA
66 CATATTTTATTTTTTATATTATTTTAGTA
57522840 AAAAATCGGC
Statistics
Matches: 1483, Mismatches: 100, Indels: 37
0.92 0.06 0.02
Matches are distributed among these distances:
144 43 0.03
145 83 0.06
146 1 0.00
147 8 0.01
148 1 0.00
149 1 0.00
150 168 0.11
151 655 0.44
152 387 0.26
153 136 0.09
ACGTcount: A:0.29, C:0.06, G:0.07, T:0.58
Consensus pattern (152 bp):
TGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTT
CATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
ATATTAATTTAGTAAATAACCC
Found at i:57521759 original size:18 final size:18
Alignment explanation
Indices: 57521736--57521774 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
57521726 TCAGATTTTA
57521736 TTTTTTAAAATATATTAT
1 TTTTTTAAAATATATTAT
***
57521754 TTTTTTATTTTATATTAT
1 TTTTTTAAAATATATTAT
57521772 TTT
1 TTT
57521775 AGTATATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTTAAAATATATTAT
Found at i:57522376 original size:12 final size:13
Alignment explanation
Indices: 57522344--57522379 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
57522334 TTTTTTAAAA
57522344 TATATTATTTTTG
1 TATATTATTTTTG
*
57522357 TATTTTATTTTT-
1 TATATTATTTTTG
57522369 TATATTATTTT
1 TATATTATTTT
57522380 AGTACATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (13 bp):
TATATTATTTTTG
Found at i:57522900 original size:17 final size:17
Alignment explanation
Indices: 57522874--57522912 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
57522864 CCCCAAAAAA
*
57522874 TATTTTTTTTCATATTT
1 TATTTATTTTCATATTT
**
57522891 TATTTATTTTTGTATTT
1 TATTTATTTTCATATTT
57522908 TATTT
1 TATTT
57522913 TTTCATTAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (17 bp):
TATTTATTTTCATATTT
Found at i:57522943 original size:16 final size:16
Alignment explanation
Indices: 57522877--57522956 Score: 63
Period size: 16 Copynumber: 4.9 Consensus size: 16
57522867 CAAAAAATAT
57522877 TTTTTTTCA-TATTTTA
1 TTTTTTT-AGTATTTTA
*
57522893 TTTATTTTTGTATTTTA
1 TTT-TTTTAGTATTTTA
* * ***
57522910 TTTTTTCATTAAGATA
1 TTTTTTTAGTATTTTA
57522926 TTTTTTTAGTATTTTA
1 TTTTTTTAGTATTTTA
* *
57522942 TTTTTATACTATTTT
1 TTTTTTTAGTATTTT
57522957 TATAAAATAG
Statistics
Matches: 48, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
16 34 0.71
17 14 0.29
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (16 bp):
TTTTTTTAGTATTTTA
Found at i:57523384 original size:14 final size:13
Alignment explanation
Indices: 57523339--57523399 Score: 56
Period size: 14 Copynumber: 4.7 Consensus size: 13
57523329 AATTACCTTT
57523339 TTTTTCTT-TCT-
1 TTTTTCTTCTCTC
57523350 TTTTTCTTCTCTCC
1 TTTTTCTTCTCT-C
*
57523364 TTCTTCTTCTCCTC
1 TTTTTCTTCT-CTC
*
57523378 TTTTTCTT-TTTC
1 TTTTTCTTCTCTC
57523390 TTTTTTCTTC
1 -TTTTTCTTC
57523400 CCTCACCAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.20
12 5 0.12
13 9 0.22
14 17 0.41
15 2 0.05
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTCTTCTCTC
Found at i:57523441 original size:3 final size:3
Alignment explanation
Indices: 57523426--57523495 Score: 53
Period size: 3 Copynumber: 25.0 Consensus size: 3
57523416 TCCTTCTCCG
* *
57523426 TCT TCT CCT TCT TCT TCT TC- TCT TCT T-T TTT TCT TC- TCT T-T T-T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
57523469 TCT T-T TTT TCT TCT CCT TCT TCCT TCT
1 TCT TCT TCT TCT TCT TCT TCT T-CT TCT
57523496 CGAAATAAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
2 12 0.22
3 40 0.73
4 3 0.05
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:57523451 original size:20 final size:18
Alignment explanation
Indices: 57523426--57523489 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 18
57523416 TCCTTCTCCG
57523426 TCTTCTCCTTCTTCTTCTTC
1 TCTTCT-CTTCTT-TTCTTC
57523446 TCTTCT-TT-TTTTCTTC
1 TCTTCTCTTCTTTTCTTC
*
57523462 TCTT-TTTTCTTTT-TT-
1 TCTTCTCTTCTTTTCTTC
57523477 TCTTCTCCTTCTT
1 TCTTCT-CTTCTT
57523490 CCTTCTCGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
15 5 0.13
16 15 0.38
17 11 0.28
18 2 0.05
20 6 0.15
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (18 bp):
TCTTCTCTTCTTTTCTTC
Found at i:57524108 original size:18 final size:17
Alignment explanation
Indices: 57524075--57524108 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
57524065 TCAGGGTGTG
*
57524075 TGTTAGTGGGATTTAGT
1 TGTTAGTGGGAGTTAGT
57524092 TGTTAGTGGGGAGTTAG
1 TGTTAGT-GGGAGTTAG
57524109 GATATTCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (17 bp):
TGTTAGTGGGAGTTAGT
Found at i:57525565 original size:7 final size:7
Alignment explanation
Indices: 57525553--57525586 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
57525543 TTTGGTTTTC
57525553 TTTTGGT
1 TTTTGGT
57525560 TTTTGGT
1 TTTTGGT
57525567 TTTTGGT
1 TTTTGGT
57525574 TTTTGGT
1 TTTTGGT
57525581 TTTTGG
1 TTTTGG
57525587 ATTAGATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71
Consensus pattern (7 bp):
TTTTGGT
Found at i:57528543 original size:19 final size:20
Alignment explanation
Indices: 57528519--57528556 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
57528509 AATGAAGTTA
*
57528519 AAAAAGGAAGA-AAAATCCG
1 AAAAAGAAAGAGAAAATCCG
57528538 AAAAAGAAAGAGAAAATCC
1 AAAAAGAAAGAGAAAATCC
57528557 CATAGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.66, C:0.11, G:0.18, T:0.05
Consensus pattern (20 bp):
AAAAAGAAAGAGAAAATCCG
Found at i:57533293 original size:93 final size:93
Alignment explanation
Indices: 57533144--57533329 Score: 293
Period size: 93 Copynumber: 2.0 Consensus size: 93
57533134 AGCAATCCTT
* * *
57533144 TTCTTAGCCTTTATTTACTTTTGTTAGGATTGAGCTCTGATTAGATATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
57533209 TATTGATTCATCCTTTTTTCTATTATTTC
66 TATTGATTCAT-CTTTTTTCTATTATTTC
* *
57533238 TTCTTCGCCTTTATTTAC-TTTATTAGGATTGAACTTTGATTAGAGATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
* *
57533302 TGTTTATTCATCTTTTTTCTATTATTTC
66 TATTGATTCATCTTTTTTCTATTATTTC
57533330 CTGGCAGCTC
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 17 0.20
93 51 0.60
94 17 0.20
ACGTcount: A:0.18, C:0.11, G:0.13, T:0.57
Consensus pattern (93 bp):
TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
TATTGATTCATCTTTTTTCTATTATTTC
Found at i:57534748 original size:20 final size:20
Alignment explanation
Indices: 57534723--57534762 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
57534713 AACAATTAAA
57534723 ATATAAATTTATTAATATAT
1 ATATAAATTTATTAATATAT
57534743 ATATAAATTTATTAATATAT
1 ATATAAATTTATTAATATAT
57534763 GTAAAAACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATAAATTTATTAATATAT
Found at i:57536472 original size:45 final size:45
Alignment explanation
Indices: 57536422--57536512 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
57536412 GTTTACGAGT
* *
57536422 ATAAGAAAAATGGGAGAGAAAAAAGTAGTTAGAAATCAAGATTGA
1 ATAAGAAAAATGAGAGACAAAAAAGTAGTTAGAAATCAAGATTGA
57536467 ATAAGAAAAATGAGAGACAAAAAAGTAGTTAGAAATCAAGATTGA
1 ATAAGAAAAATGAGAGACAAAAAAGTAGTTAGAAATCAAGATTGA
57536512 A
1 A
57536513 GATGAACGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.57, C:0.03, G:0.22, T:0.18
Consensus pattern (45 bp):
ATAAGAAAAATGAGAGACAAAAAAGTAGTTAGAAATCAAGATTGA
Found at i:57539289 original size:48 final size:48
Alignment explanation
Indices: 57539234--57539600 Score: 547
Period size: 48 Copynumber: 7.7 Consensus size: 48
57539224 ATCATGCTAA
* *
57539234 ATGTGCCTGTTTAAGACCATGTCTAGGACATGGCATCAGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* *
57539282 ATGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * *
57539330 ATGTGCCTGTGTAAGATCATGTCTGAGACATGGCATTAGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
*
57539378 ATGTGCCTGTGTAAGACCATG-CTGGGACATGGCATTAGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * ** *
57539425 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGTATCGGTAACGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* * *
57539473 ATGTGCCTGCGTAAGACCATGTCTGGGATATGACATCAGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* *
57539521 ATGTGCCTGTGTAAGACCTTGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
* *
57539569 GTGTGCCAGTGTAAGACCATGTCTGGGACATG
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATG
57539601 ACATTAGTAC
Statistics
Matches: 285, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 46 0.16
48 239 0.84
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
Found at i:57539565 original size:191 final size:192
Alignment explanation
Indices: 57539234--57539607 Score: 561
Period size: 191 Copynumber: 2.0 Consensus size: 192
57539224 ATCATGCTAA
* * * *
57539234 ATGTGCCTGTTTAAGACCATGTCTAGGACATGGCATCAGCGATGATATATGTGCCTATGTAAGAC
1 ATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCAGCAACGATATATGTGCCTACGTAAGAC
* * *
57539299 CATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGATCATGTCTGAGACATGGC
66 CATGTCTGGGACATGACATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCTGAGACATGGC
* * *
57539364 ATTAGCGATGATATATGTGCCTGTGTAAGACCATG-CTGGGACATGGCATTAGCGATGATAT
131 ATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGACATTAGCGATGATAT
* * * * *
57539425 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGTATCGGTAACGATATATGTGCCTGCGTAAGAC
1 ATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCAGCAACGATATATGTGCCTACGTAAGAC
* * *
57539490 CATGTCTGGGATATGACATCAGCGATGATATATGTGCCTGTGTAAGACCTTGTCTGGGACATGGC
66 CATGTCTGGGACATGACATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCTGAGACATGGC
* *
57539555 ATCGGCGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGACATTAG
131 ATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGACATTAG
57539608 TACTTTAATT
Statistics
Matches: 162, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
191 146 0.90
192 16 0.10
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (192 bp):
ATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCAGCAACGATATATGTGCCTACGTAAGAC
CATGTCTGGGACATGACATCAGCGATGATATATGTGCCTGTGTAAGACCATGTCTGAGACATGGC
ATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGACATTAGCGATGATAT
Found at i:57542008 original size:40 final size:40
Alignment explanation
Indices: 57541924--57542108 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 40
57541914 TTGAATGCTG
* *
57541924 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
57541963 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
57542004 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
57542043 TCCGGGTTAGGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
*
57542082 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
57542109 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
39 35 0.28
40 76 0.61
41 12 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:57542060 original size:79 final size:81
Alignment explanation
Indices: 57541924--57542108 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
57541914 TTGAATGCTG
*
57541924 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
57541988 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * * * * *
57542003 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-GTTAGGTCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
57542065 TTTGTGCGAATTACTATA
64 TTTGTGCGAATTACTATA
*
57542083 ACCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57542109 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 54 0.59
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:57542130 original size:79 final size:79
Alignment explanation
Indices: 57541977--57542130 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 79
57541967 GGACTAAGAT
* ** *
57541977 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
57542042 ATCCGGGTTAGGTC
66 ATCCCGGTTAGGTC
57542056 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTAAGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
*
57542118 CTATA-CCCGGTTA
62 CTAAATCCCGGTTA
57542131 AATTCCGAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
78 3 0.05
79 40 0.62
80 22 0.34
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCCGGTTAGGTC
Found at i:57549907 original size:38 final size:37
Alignment explanation
Indices: 57549771--57549925 Score: 163
Period size: 36 Copynumber: 4.1 Consensus size: 37
57549761 ATGCTGTCCG
* * *
57549771 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTA-ATCC
* *
57549810 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTATTCC
1 GG-CTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATCC
57549849 GGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAATCC
1 GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATCC
*
57549885 GGTTAAGTCCCGAAGGCATTTGTGCGA-TATAGCTAATCC
1 GGCTAAGT-CCGAAGGCATTTGTGCGAGT-TA-CTAATCC
57549924 GG
1 GG
57549926 ATTTAACAGT
Statistics
Matches: 101, Mismatches: 8, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
36 33 0.33
37 1 0.01
38 25 0.25
39 16 0.16
40 18 0.18
41 8 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (37 bp):
GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATCC
Found at i:57562905 original size:26 final size:26
Alignment explanation
Indices: 57562852--57563008 Score: 223
Period size: 26 Copynumber: 6.2 Consensus size: 26
57562842 GGCCTAGCGT
57562852 CTTTT-AAT-AACTGGGGCA-AAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
**
57562875 CTTTTCGGTAAACTGGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
57562901 CTTTTCAATAAACTGGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
* *
57562927 CTTTTCAATAAACTAGGGCATGAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
**
57562953 CTTTTCGGTAAACTGGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
*
57562979 CTTTTCAATAAACTAGGGCAT-AGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
57563004 CTTTT
1 CTTTT
57563009 GCACTTCCTC
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
23 5 0.04
24 1 0.01
25 19 0.16
26 93 0.79
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTTTCAATAAACTGGGGCATAAGCC
Found at i:57563087 original size:20 final size:20
Alignment explanation
Indices: 57563058--57563132 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
57563048 TTATGATTAC
*
57563058 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
57563078 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
57563098 ATCATGTGCATATCATATCAT
1 ATCATGTGCATATCATA-CAT
57563119 -TCATGT--ATATCATA
1 ATCATGTGCATATCATA
57563133 TCCCACGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 40 0.78
21 3 0.06
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:57563089 original size:11 final size:11
Alignment explanation
Indices: 57563058--57563115 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
57563048 TTATGATTAC
*
57563058 ATCATGTGCAT
1 ATCATATGCAT
*
57563069 TTCATA--CAT
1 ATCATATGCAT
57563078 ATCATATGCAT
1 ATCATATGCAT
57563089 ATCATA--CAT
1 ATCATATGCAT
*
57563098 ATCATGTGCAT
1 ATCATATGCAT
57563109 ATCATAT
1 ATCATAT
57563116 CATTCATGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
9 16 0.42
11 22 0.58
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:57565169 original size:19 final size:20
Alignment explanation
Indices: 57565147--57565187 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
57565137 AGGTTATACC
57565147 ATCAAAATAATCACATA-AT
1 ATCAAAATAATCACATATAT
* *
57565166 ATCAAATTATTCACATATAT
1 ATCAAAATAATCACATATAT
57565186 AT
1 AT
57565188 ACTTATAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (20 bp):
ATCAAAATAATCACATATAT
Found at i:57566552 original size:22 final size:22
Alignment explanation
Indices: 57566527--57566597 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
57566517 GATTTTTGTT
57566527 TTGAGTATTATTGCAAAATTGG
1 TTGAGTATTATTGCAAAATTGG
* **
57566549 TTGAATGATT-TCCCGAAAA-T-G
1 TTGAGT-ATTATTGC-AAAATTGG
**
57566570 TACAGTATTATTGCAAAATTGG
1 TTGAGTATTATTGCAAAATTGG
57566592 TTGAGT
1 TTGAGT
57566598 GTACAGTGTC
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
20 7 0.21
21 7 0.21
22 13 0.38
23 7 0.21
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (22 bp):
TTGAGTATTATTGCAAAATTGG
Found at i:57568198 original size:42 final size:42
Alignment explanation
Indices: 57568103--57568256 Score: 157
Period size: 42 Copynumber: 3.6 Consensus size: 42
57568093 TAAGACTATG
* * * * *
57568103 TGTAAGACCAAATCCGGGATATGGCATCTATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATAAGAGACTTCA
* **
57568145 TGTAAGGCCATATCTGGGATATGAAATCGATAAGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATAAGAGACTTCA
* * * *
57568187 TGTAAGACCATAGCTGGGTTATTGGCATCGATACGAGA-TCCTA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATAAGAGACTTC-A
* *
57568230 TGTAACACCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
57568257 TGGTATGGTA
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
42 60 0.66
43 31 0.34
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATAAGAGACTTCA
Found at i:57578463 original size:43 final size:42
Alignment explanation
Indices: 57578333--57578485 Score: 175
Period size: 42 Copynumber: 3.6 Consensus size: 42
57578323 AAGACTATGG
* * *
57578333 GTAAGACCATATCTAGGATATGGCATCTATATGAGACTTCGT
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCAT
* **
57578375 GTAAGACCATCA-CTGGGATATGGCATCGATAAGAGACTTTTT
1 GTAAGACCAT-ATCTGGGATATGGCATCGATATGAGACTTCAT
* * *
57578417 GTAATACCATAGCTGGGATATTGGCATCGATATGAGA-TCCCAT
1 GTAAGACCATATCTGGGATA-TGGCATCGATATGAGACT-TCAT
*
57578460 GTAAGACCATATTTGGGATATGGCAT
1 GTAAGACCATATCTGGGATATGGCAT
57578486 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.01
42 59 0.63
43 34 0.36
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCAT
Found at i:57578684 original size:15 final size:16
Alignment explanation
Indices: 57578658--57578687 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
57578648 TGAACCCTCG
57578658 GTAAGATTATGATTGA
1 GTAAGATTATGATTGA
57578674 GTAAG-TTATGATTG
1 GTAAGATTATGATTG
57578688 TAAAATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (16 bp):
GTAAGATTATGATTGA
Found at i:57580681 original size:41 final size:40
Alignment explanation
Indices: 57580554--57580698 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
57580544 CTCGCACAAG
* * * ** *
57580554 GCCTTCGGGTCTTAACCCGGATATGGTAACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
57580594 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
57580634 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
57580675 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
57580699 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:57588698 original size:41 final size:40
Alignment explanation
Indices: 57588571--57588715 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
57588561 CTCGCACAAG
* * * * *
57588571 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
57588611 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
57588651 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
57588692 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
57588716 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:57601080 original size:21 final size:21
Alignment explanation
Indices: 57601054--57601097 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
57601044 ACGACCTAAT
*
57601054 TAAATAGAAAGGATA-ATTAAA
1 TAAATA-AAAGGATACAATAAA
*
57601075 TAAATAAAATGATACAATAAA
1 TAAATAAAAGGATACAATAAA
57601096 TA
1 TA
57601098 CTAAAGATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (21 bp):
TAAATAAAAGGATACAATAAA
Found at i:57607654 original size:94 final size:94
Alignment explanation
Indices: 57607536--57607752 Score: 317
Period size: 94 Copynumber: 2.3 Consensus size: 94
57607526 TCCGTGCCGT
* * * * *
57607536 TGCATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAATTTCGATGCTATGTCCCAGACATGG
1 TGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAATGTCAATGCCATGTCCCAGACATAG
* * * *
57607601 TGTTACACTTGCTTTCATAATATGATTGA
66 TCTTACACTGGCTTTCATAATAAGACTGA
*
57607630 TGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAATGTCAATGCCATGTCCCTGACATAG
1 TGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAATGTCAATGCCATGTCCCAGACATAG
*
57607695 TCTTACACTGGCTTTCATAATAAGGCTGA
66 TCTTACACTGGCTTTCATAATAAGACTGA
* *
57607724 TGCATGTCCCAAACCTGTCTTACACTGGC
1 TGCATGTCCCAGACATGTCTTACACTGGC
57607753 TCACATAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 110 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (94 bp):
TGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAATGTCAATGCCATGTCCCAGACATAG
TCTTACACTGGCTTTCATAATAAGACTGA
Found at i:57607730 original size:47 final size:45
Alignment explanation
Indices: 57607536--57607762 Score: 179
Period size: 47 Copynumber: 4.9 Consensus size: 45
57607526 TCCGTGCCGT
* * * **
57607536 TGCATGTCCCAGACATGTCTTACACTGGCACTCGT-CTCAATTTCGA
1 TGCATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-AAGGT-GA
* * * * *
57607582 TGCTATGTCCCAGACATGGTGTTACACTTGCTTTCATAATATGATTGA
1 TGC-ATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATAAG-GTGA
* * * *
57607630 TGCATGTCCCAGACATGTCTTACACTGGCACTCAT-CTCAATGTCAA
1 TGCATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-AAGGT-GA
* *
57607676 TGCCATGTCCCTGACATAGTCTTACACTGGCTTTCATAATAAGGCTGA
1 TG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATAAGG-TGA
* * *
57607724 TGCATGTCCCAAACCTGTCTTACACTGGCTCACATAATA
1 TGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATA
57607763 GTAGTGTCTC
Statistics
Matches: 143, Mismatches: 28, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
45 2 0.01
46 43 0.30
47 50 0.35
48 43 0.30
49 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (45 bp):
TGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATAAGGTGA
Found at i:57610352 original size:15 final size:15
Alignment explanation
Indices: 57610317--57610357 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
57610307 TCCATAACGG
57610317 AGAAATCCAGAATATA
1 AGAAATCCA-AATATA
57610333 A-AAATCCAACATA-A
1 AGAAATCCAA-ATATA
57610347 AGAAATCCAAA
1 AGAAATCCAAA
57610358 ACAAGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 4 0.17
15 18 0.78
16 1 0.04
ACGTcount: A:0.61, C:0.17, G:0.07, T:0.15
Consensus pattern (15 bp):
AGAAATCCAAATATA
Found at i:57614252 original size:94 final size:92
Alignment explanation
Indices: 57614135--57614304 Score: 245
Period size: 94 Copynumber: 1.8 Consensus size: 92
57614125 ACATCCGTGC
* *
57614135 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACAT-CTCGA-GGCTGATGCATGTCCCAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATAAT--ATGGCCGATGCATGTCCCAGAC
57614198 ATGTCTTACACTGTCACTCGTCTCAATGT
64 ATGTCTTACACTGTCACTCGTCTCAATGT
* * *
57614227 CGATGCCATGTCCCAGATATGGTCTTACACTGGCTTTCATAATATGGCCGATGCATGTCCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATAATATGGCCGATGCATGTCCCAGAC
57614292 ATGTCTTACACTG
64 ATGTCTTACACTG
57614305 GCTCACATAA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
92 5 0.07
93 14 0.20
94 49 0.71
95 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATAATATGGCCGATGCATGTCCCAGACAT
GTCTTACACTGTCACTCGTCTCAATGT
Found at i:57614314 original size:46 final size:46
Alignment explanation
Indices: 57614083--57614314 Score: 188
Period size: 46 Copynumber: 4.9 Consensus size: 46
57614073 ACATATCGAT
* * * **
57614083 GCCGATGCCATATCCCAGATATGGTCTTACACTGGCTCTCACACATCCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATA-ATATG
* *
57614132 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACAT-CTCGA-G
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT--ATG
* * *
57614179 GCTGATGCATGTCCCAGACATGTCTTACACTGTCACTCGTC-TCA-AT-
1 GCCGATGCATGTCCCAGACATGTCTTACACTG--GCTC-TCATAATATG
* * *
57614225 GTCGATGCCATGTCCCAGATATGGTCTTACACTGGCTTTCATAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATATG
*
57614273 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACATAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAA
57614315 CAACAGTGTC
Statistics
Matches: 148, Mismatches: 20, Indels: 32
0.74 0.10 0.16
Matches are distributed among these distances:
45 2 0.01
46 60 0.41
47 30 0.20
48 35 0.24
49 13 0.09
50 8 0.05
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATATG
Found at i:57617606 original size:49 final size:50
Alignment explanation
Indices: 57617526--57617771 Score: 289
Period size: 49 Copynumber: 4.9 Consensus size: 50
57617516 ATCAATTGTG
* * *
57617526 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
57617576 -GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
57617626 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
57617676 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
57617726 -GGTCACATGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
57617772 GCTTTGGCTA
Statistics
Matches: 163, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
49 79 0.48
50 47 0.29
51 37 0.23
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:57621184 original size:27 final size:28
Alignment explanation
Indices: 57621075--57621224 Score: 214
Period size: 27 Copynumber: 5.4 Consensus size: 28
57621065 GAGATTGGCG
* * * * *
57621075 CTAAGTGTGCGGGTTTAAATTGTACAACA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
57621104 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
57621132 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
57621160 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
57621187 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
57621214 CTGAGTGTGCG
1 CTAAGTGTGCG
57621225 GACTTAATAT
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
27 51 0.45
28 47 0.42
29 15 0.13
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:57621190 original size:55 final size:56
Alignment explanation
Indices: 57621075--57621224 Score: 214
Period size: 55 Copynumber: 2.7 Consensus size: 56
57621065 GAGATTGGCG
* * * * * *
57621075 CTAAGTGTGCGGGTTTAAATTGTACAACACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
57621132 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
*
57621187 CTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCG
57621225 GACTTAATAT
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
54 24 0.28
55 26 0.30
56 21 0.24
57 15 0.17
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:57642358 original size:27 final size:27
Alignment explanation
Indices: 57642328--57642505 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
57642318 ATATTGAGTC
* *
57642328 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
57642355 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
57642382 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** **
57642410 CGCACACTTAGTGCCGCATGGTCAGTT
1 CGCACACTTAGTGCTACATAATCAACT
* **
57642437 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
57642464 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
57642491 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57642506 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:57642467 original size:82 final size:81
Alignment explanation
Indices: 57642354--57642504 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
57642344 TATAATCAAC
* *
57642354 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
57642419 AGTGCCGCATGGTCAGT
65 AGTGCCGCATGGTCAGT
* **
57642436 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
57642500 AGTGC
65 AGTGC
57642505 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAGT
Found at i:57650410 original size:27 final size:27
Alignment explanation
Indices: 57650380--57650557 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
57650370 ATATTGAGTC
* *
57650380 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
57650407 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
57650434 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** **
57650462 CGCACACTTAGTGCCGCATGGTCAGTT
1 CGCACACTTAGTGCTACATAATCAACT
* **
57650489 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
57650516 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
57650543 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57650558 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:57650519 original size:82 final size:81
Alignment explanation
Indices: 57650406--57650556 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
57650396 TATAATCAAC
* *
57650406 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
57650471 AGTGCCGCATGGTCAGT
65 AGTGCCGCATGGTCAGT
* **
57650488 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
57650552 AGTGC
65 AGTGC
57650557 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAGT
Found at i:57674263 original size:40 final size:40
Alignment explanation
Indices: 57674201--57674378 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
57674191 AAGCCAAGTA
* * *
57674201 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
57674240 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
57674280 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
57674320 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
57674360 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
57674379 TTATCGTCTG
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.10
40 112 0.90
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57682308 original size:40 final size:40
Alignment explanation
Indices: 57682246--57682463 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
57682236 AAGCCAAGTA
* * *
57682246 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
57682285 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
57682325 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
57682365 CCTTCGAGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
57682405 CCTTCAGGACTTAGCCCGGA-ACTAGTAATTAGCGCAAATA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
57682445 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
57682464 TTATCGTCCA
Statistics
Matches: 155, Mismatches: 21, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
39 13 0.08
40 142 0.92
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57683275 original size:21 final size:21
Alignment explanation
Indices: 57683233--57683275 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
57683223 TACTAACATT
* *
57683233 TTTCACTTCACTTTACTGCCA
1 TTTCACATCACTTTACTACCA
57683254 TTTCACATCTACTTT-CTACCA
1 TTTCACATC-ACTTTACTACCA
57683275 T
1 T
57683276 GGCCGAATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.21, C:0.33, G:0.02, T:0.44
Consensus pattern (21 bp):
TTTCACATCACTTTACTACCA
Found at i:57685721 original size:29 final size:29
Alignment explanation
Indices: 57685628--57685732 Score: 129
Period size: 29 Copynumber: 3.6 Consensus size: 29
57685618 GTTTATACCT
* * *
57685628 ATTTGGTTTCGGGCCATGTATATCGGATG
1 ATTTGGCTTCAGGCCATGCATATCGGATG
* *
57685657 CTTTGGCTTTAGGCCATGCATATCGGATG
1 ATTTGGCTTCAGGCCATGCATATCGGATG
* *
57685686 CTTTGGCTTCAGGCCATGCATATCGAATG
1 ATTTGGCTTCAGGCCATGCATATCGGATG
* *
57685715 ATTTGGCTCCTGGCCATG
1 ATTTGGCTTCAGGCCATG
57685733 ATAATTGTTT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.17, C:0.21, G:0.28, T:0.34
Consensus pattern (29 bp):
ATTTGGCTTCAGGCCATGCATATCGGATG
Found at i:57693251 original size:46 final size:46
Alignment explanation
Indices: 57693150--57693237 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
57693140 TGTAACCCGC
* * *
57693150 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
57693196 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
57693238 AACCATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:57693688 original size:30 final size:30
Alignment explanation
Indices: 57693654--57693713 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
57693644 ATTTAATACG
57693654 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
57693684 AACTTTTGCATAATTACACTTTTGGCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
57693714 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:57700692 original size:46 final size:46
Alignment explanation
Indices: 57700625--57700798 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
57700615 TGTAACCCGC
* *
57700625 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
57700671 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
57700721 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
57700764 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
57700799 AATGCTCAAC
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.57
47 28 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:57700744 original size:93 final size:93
Alignment explanation
Indices: 57700633--57700803 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
57700623 GCCCATAAGT
* * *
57700633 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57700698 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGAATGCCTAGTTACATTTCAC
*
57700726 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57700791 CGAGTTCGAATGC
66 CGAGTTCGAATGC
57700804 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATTTCAC
Found at i:57701257 original size:30 final size:30
Alignment explanation
Indices: 57701223--57701282 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
57701213 ATTTAATACG
57701223 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
57701253 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
57701283 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:57707462 original size:47 final size:47
Alignment explanation
Indices: 57707408--57707601 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
57707398 TTAGGATGTT
** * *
57707408 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57707455 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
57707502 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
57707549 ATATGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
57707596 ATGTGA
1 ATGTGA
57707602 AATATGTATG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:57707508 original size:22 final size:22
Alignment explanation
Indices: 57707437--57707508 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
57707427 GTATATATGA
57707437 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
57707459 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
57707484 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
57707506 GAT
1 GAT
57707509 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:57707629 original size:48 final size:48
Alignment explanation
Indices: 57707572--57707707 Score: 211
Period size: 50 Copynumber: 2.8 Consensus size: 48
57707562 GAACATGCAT
57707572 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
57707620 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
*
57707670 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
57707708 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
47 1 0.01
48 33 0.41
49 4 0.05
50 41 0.51
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:57707722 original size:50 final size:50
Alignment explanation
Indices: 57707566--57707728 Score: 201
Period size: 50 Copynumber: 3.3 Consensus size: 50
57707556 GAATATGAAC
*
57707566 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
57707616 ATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGAT
* * *
57707666 AT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
57707714 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
57707729 CCGAACGACC
Statistics
Matches: 98, Mismatches: 6, Indels: 17
0.81 0.05 0.14
Matches are distributed among these distances:
47 1 0.01
48 38 0.39
49 4 0.04
50 49 0.50
51 6 0.06
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:57707904 original size:37 final size:35
Alignment explanation
Indices: 57707854--57707957 Score: 122
Period size: 37 Copynumber: 2.9 Consensus size: 35
57707844 GGAAATATAT
*
57707854 TCCGGGTAAGACCCGATGACTGCGTGTGGAGGTTATG
1 TCCGGGTAAGACCCGAT-ACT-CGTGTGGAGATTATG
*
57707891 TCCGGGTAAGACCCGATA--CGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATACTCGTGTGGAGATTATG
**
57707924 TCCGGGTAAGACTTGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGAT-AC-TCGTGTGGAGATT
57707958 TCGTCTGAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
33 28 0.47
34 1 0.02
36 1 0.02
37 29 0.49
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (35 bp):
TCCGGGTAAGACCCGATACTCGTGTGGAGATTATG
Found at i:57707926 original size:33 final size:35
Alignment explanation
Indices: 57707854--57707935 Score: 114
Period size: 33 Copynumber: 2.3 Consensus size: 35
57707844 GGAAATATAT
*
57707854 TCCGGGTAAGACCCGATGACTGCGTGTGGAGGTTATG
1 TCCGGGTAAGACCCGATGAC--CGTGTGGAGATTATG
*
57707891 TCCGGGTAAGACCCGAT-A-CGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACCGTGTGGAGATTATG
57707924 TCCGGGTAAGAC
1 TCCGGGTAAGAC
57707936 TTGATAACTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
33 25 0.58
36 1 0.02
37 17 0.40
ACGTcount: A:0.21, C:0.20, G:0.35, T:0.24
Consensus pattern (35 bp):
TCCGGGTAAGACCCGATGACCGTGTGGAGATTATG
Found at i:57714907 original size:20 final size:21
Alignment explanation
Indices: 57714882--57714920 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
57714872 TGGGCCCGTA
*
57714882 AGCCTATTG-GGCCCAATTTT
1 AGCCTATCGAGGCCCAATTTT
57714902 AGCCTATCGAGGCCCAATT
1 AGCCTATCGAGGCCCAATT
57714921 ACCAAAGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (21 bp):
AGCCTATCGAGGCCCAATTTT
Found at i:57717195 original size:28 final size:27
Alignment explanation
Indices: 57717134--57717195 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 27
57717124 ATTTACTAAA
* *
57717134 ATACCCCTAAGTATGACAATTACCATT
1 ATACCCCTAAGTATGAAAATGACCATT
57717161 ATACCCCTAAGTATGCAAAATGACCATT
1 ATACCCCTAAGTATG-AAAATGACCATT
57717189 ATACCCC
1 ATACCCC
57717196 CAGGGTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 15 0.47
28 17 0.53
ACGTcount: A:0.37, C:0.29, G:0.08, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGTATGAAAATGACCATT
Found at i:57717372 original size:27 final size:26
Alignment explanation
Indices: 57717301--57717413 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
57717291 TGGAGGAAGC
57717301 GTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTATGCCACAA-TATCT
*
57717328 GTTTCTGGTGGCTATGCCACAGATATTT
1 G-TTCTGGTGGCTATGCCACA-ATATCT
* *
57717356 GTTCTAGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
57717382 ATATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
57717409 GTTCT
1 GTTCT
57717414 AGCAGCCATG
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 9 0.12
27 40 0.54
28 24 0.32
29 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:57720003 original size:22 final size:24
Alignment explanation
Indices: 57719951--57720007 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 24
57719941 TTTGAAAGTC
57719951 CGCACACATAGTGCTCTTACTTATT
1 CGCACACATAGTGCTC-TACTTATT
*
57719976 CGCACACATAGTGC-C-ACTTTTT
1 CGCACACATAGTGCTCTACTTATT
*
57719998 CTCACACATA
1 CGCACACATA
57720008 TAGTGCCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 15 0.50
24 1 0.03
25 14 0.47
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.32
Consensus pattern (24 bp):
CGCACACATAGTGCTCTACTTATT
Found at i:57731282 original size:40 final size:40
Alignment explanation
Indices: 57731238--57731422 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
57731228 GCTACTCGTT
* *
57731238 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * *
57731278 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
57731318 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
57731357 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
*
57731398 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57731423 CATCATTCGA
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 4 0.03
39 28 0.23
40 75 0.62
41 14 0.12
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:57731383 original size:79 final size:80
Alignment explanation
Indices: 57731215--57731369 Score: 201
Period size: 79 Copynumber: 2.0 Consensus size: 80
57731205 CCTTCGAAAT
* * **
57731215 TTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTAGCA
1 TTAACCCGGATTTAG-TAACTCGTACAAATGCCTTCGGGACATAGCCCGAATATAGTAACTAGCA
57731278 CAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
* * *
57731294 TTAACCCGGATTTAGTAACTCGTACCAATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCA
1 TTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACATAGCCCGAATA-TAGTAACTAGCA
57731357 CAAATGCCTTCGG
65 CAAATGCCTTCGG
57731370 ATCTTAGTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 1 0.02
79 37 0.56
80 28 0.42
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACATAGCCCGAATATAGTAACTAGCAC
AAATGCCTTCGGGAC
Found at i:57731406 original size:79 final size:79
Alignment explanation
Indices: 57731266--57731420 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 79
57731256 AGCCCGGTTA
* *
57731266 TAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTACCAATGCCTTC-G
1 TAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTC-TACCAAAGCCTTCAG
*
57731330 GGCTTAGCCCGAAAT
65 GACTTAGCCCGAAAT
* ** * *
57731345 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACT-TAGCACAAAGCCTTC
1 TAGTAACTAGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTCTA-C-CAAAGCCTTC
57731408 AGGACTTAGCCCG
63 AGGACTTAGCCCG
57731421 GACATCATTC
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
77 2 0.03
78 4 0.06
79 47 0.73
80 11 0.17
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
TAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCTACCAAAGCCTTCAGG
ACTTAGCCCGAAAT
Found at i:57737499 original size:79 final size:79
Alignment explanation
Indices: 57737355--57737525 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 79
57737345 GAATCACGTA
* * *
57737355 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGT
1 CCTTCGGAACTTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGT
*
57737420 AACTCGTTCAAATG
66 AACTCGTACAAATG
* * * *
57737434 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGTACCAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 CCTTCGGAACTTAA-CCGGATATAGCT-ACTCGTACAAATGCCTTCGGGACATAGCCCGGATA-T
57737496 AGTAACTCGTACAAATG
63 AGTAACTCGTACAAATG
*
57737513 CCTTCGGATCTTA
1 CCTTCGGAACTTA
57737526 GTCCAGATAT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 50 0.63
80 28 0.35
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (79 bp):
CCTTCGGAACTTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGT
AACTCGTACAAATG
Found at i:57737502 original size:39 final size:40
Alignment explanation
Indices: 57737381--57737572 Score: 203
Period size: 40 Copynumber: 4.8 Consensus size: 40
57737371 GGATATAGCT
* *
57737381 ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
57737421 ACTCGTTCAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
57737461 ACTCGTACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * *
57737500 ACTCGTACAAATGCCTTC-GGATCTTAGTCCAGATATGGTC
1 ACTCGTACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* * *
57737540 ACTTAGCACAAA-GCCTTCGGTACTTAGCCCGGA
1 AC-TCGTACAAATGCCTTCGGGACTTAGCCCGGA
57737573 CATCATTCGA
Statistics
Matches: 129, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 83 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:57747382 original size:28 final size:28
Alignment explanation
Indices: 57747319--57747553 Score: 375
Period size: 28 Copynumber: 8.4 Consensus size: 28
57747309 ATATTAAGTC
* *
57747319 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
57747346 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
57747374 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
57747402 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
57747430 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
57747458 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
57747486 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
57747514 CGCACACTTAGTGCTGTACA-ATTTAAACT
1 CGCACACTTAGTGC--TACATAATCAAACT
57747543 CGCACACTTAG
1 CGCACACTTAG
57747554 CGCCAATCTC
Statistics
Matches: 198, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
27 22 0.11
28 155 0.78
29 17 0.09
30 4 0.02
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:57755689 original size:28 final size:28
Alignment explanation
Indices: 57755626--57755807 Score: 330
Period size: 28 Copynumber: 6.5 Consensus size: 28
57755616 ATATTAAGTC
* *
57755626 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
57755653 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
57755681 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
57755709 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
57755737 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
57755765 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
57755793 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57755808 GTACAATTTA
Statistics
Matches: 152, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
27 22 0.14
28 130 0.86
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:57759194 original size:20 final size:21
Alignment explanation
Indices: 57759169--57759207 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
57759159 TAATTTCTTC
*
57759169 TTTTATTCCTATT-TTTATTT
1 TTTTATTCATATTATTTATTT
57759189 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
57759208 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTCATATTATTTATTT
Found at i:57765126 original size:42 final size:42
Alignment explanation
Indices: 57765075--57765189 Score: 124
Period size: 44 Copynumber: 2.7 Consensus size: 42
57765065 CAGATGCCTC
* * * * *
57765075 TGTCTCAGACAGGGTCTTACACGAAATC-AGATACGATGCCGG
1 TGTCCCAGACACGGTCTTACACGAAATCTAAAT-CAAGGCCGG
* *
57765117 TGTCCCAGACATGGTCTTACACGTAAATCTTAAATCAAGGCCTG
1 TGTCCCAGACACGGTCTTACACG-AAATC-TAAATCAAGGCCGG
*
57765161 TGTCCCAGACACGGTCTTACACGATATCT
1 TGTCCCAGACACGGTCTTACACGAAATCT
57765190 CAGATCTATG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
42 22 0.35
43 9 0.15
44 28 0.45
45 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATCTAAATCAAGGCCGG
Found at i:57766257 original size:162 final size:162
Alignment explanation
Indices: 57765990--57766317 Score: 656
Period size: 162 Copynumber: 2.0 Consensus size: 162
57765980 TTTTTGGCTA
57765990 TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
1 TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
57766055 CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
66 CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
57766120 ACTATCAATGGTCAAATTGACATGCAAGTGCT
131 ACTATCAATGGTCAAATTGACATGCAAGTGCT
57766152 TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
1 TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
57766217 CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
66 CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
57766282 ACTATCAATGGTCAAATTGACATGCAAGTGCT
131 ACTATCAATGGTCAAATTGACATGCAAGTGCT
57766314 TCAT
1 TCAT
57766318 ACTTTCTTTT
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
162 166 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (162 bp):
TCATGCATGATAAAATGGCTTCCATTCATTTTATTTTATTAATCATAACATTAAAAATAAGTTTA
CCATTTTACCCTTAATGAATTAACATAAAATTTTACCTAACACATGTCCTTTTATGACAAAATGC
ACTATCAATGGTCAAATTGACATGCAAGTGCT
Found at i:57767915 original size:29 final size:29
Alignment explanation
Indices: 57767851--57767961 Score: 113
Period size: 29 Copynumber: 3.9 Consensus size: 29
57767841 TACATACATG
57767851 CATATGGCCCACTT-GGCCC--ATC-TCATT
1 CATATGGCCCA-TTAGGCCCAAATCAT-ATT
* *
57767878 CATATGGCCCATCAGGCCCAATTCATATT
1 CATATGGCCCATTAGGCCCAAATCATATT
* **
57767907 CATATGGCCTATTAGGCCCAAATCACCTT
1 CATATGGCCCATTAGGCCCAAATCATATT
* *
57767936 TATATGGCCCGTTAGGCCCAAATCAT
1 CATATGGCCCATTAGGCCCAAATCAT
57767962 GTTATATTCA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.01
27 16 0.23
29 51 0.74
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCATATT
Found at i:57769662 original size:27 final size:27
Alignment explanation
Indices: 57769624--57769687 Score: 128
Period size: 27 Copynumber: 2.4 Consensus size: 27
57769614 TTGTATTGTA
57769624 TTAGATCGAGAACAAAGAAAATCAGAC
1 TTAGATCGAGAACAAAGAAAATCAGAC
57769651 TTAGATCGAGAACAAAGAAAATCAGAC
1 TTAGATCGAGAACAAAGAAAATCAGAC
57769678 TTAGATCGAG
1 TTAGATCGAG
57769688 GAAAGTATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.17
Consensus pattern (27 bp):
TTAGATCGAGAACAAAGAAAATCAGAC
Found at i:57770017 original size:42 final size:43
Alignment explanation
Indices: 57769917--57770034 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 43
57769907 CTGAGACATT
* * *
57769917 GTGTAAGACCGTGTCTGGGACATAGGCCTCGATTGAGATTTAT
1 GTGTAAGACCATGTCTGGGACATAGGCATCGATTGAGATTTAC
* *
57769960 GTATAAGACCATGTCTGGGACATCGGCATCGTATCT-A-ATTT-C
1 GTGTAAGACCATGTCTGGGACATAGGCATCG-AT-TGAGATTTAC
* * * *
57770002 GTGTAAGACCCTGTCTGAGATAGAGGCATCGAT
1 GTGTAAGACCATGTCTGGGACATAGGCATCGAT
57770035 ATTATACTAC
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
41 2 0.03
42 25 0.40
43 31 0.50
44 3 0.05
45 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATAGGCATCGATTGAGATTTAC
Found at i:57780891 original size:13 final size:14
Alignment explanation
Indices: 57780863--57780896 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
57780853 TAATATTTCA
*
57780863 ATTATTTTTATGTT
1 ATTATATTTATGTT
57780877 ATTATATTT-TGTT
1 ATTATATTTATGTT
57780890 ATTATAT
1 ATTATAT
57780897 GAGATGTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (14 bp):
ATTATATTTATGTT
Found at i:57781120 original size:50 final size:50
Alignment explanation
Indices: 57781045--57781372 Score: 299
Period size: 50 Copynumber: 6.5 Consensus size: 50
57781035 GTGAGTCACG
57781045 TGTGTAGTACTAAGTGCT-GGCTACTACGTGTACCAGATTGATAGGTTGCA
1 TGTGTAGTACTAAGTG-TAGGCTACTACGTGTACCAGATTGATAGGTTGCA
* * * ** *
57781095 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCG-TTAACTTCGAT-CA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGA-TAGGTTGCA
* * * * * ** **
57781144 TGTGTGTAGTACTAAGTGTAGGCTAATACATGTATCAGATGGTTAAATCACA
1 --TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
* * * *
57781196 TGTGTCGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
* * **
57781246 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCG-TT-A-ACCTTGATCA
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTG--CA
* * * *
57781295 TGTGTGTAGTACTAAGTGTAGGCTACTACTTATACCATATTGATAGGTTGTA
1 --TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
57781347 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGTAGGCTACTA
57781373 TGCATACCAG
Statistics
Matches: 221, Mismatches: 44, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
47 3 0.01
48 1 0.00
49 10 0.05
50 133 0.60
51 63 0.29
52 6 0.03
53 1 0.00
54 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTTGCA
Found at i:57781228 original size:101 final size:101
Alignment explanation
Indices: 57781044--57781229 Score: 239
Period size: 101 Copynumber: 1.8 Consensus size: 101
57781034 TGTGAGTCAC
* * * ** **
57781044 GTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCTGGCTAATACATGTACCAGATGGATAAATCACATGTGTAGTACTAAG
* **
57781109 TGTAGGCTACTATGTGTACCCGTTAACTTCGATCAT
66 TGCAGGCTACTACATGTACCCGTTAACTTCGATCAT
* * *
57781145 GTGTGTAGTACTAAGTG-TAGGCTAATACATGTATCAGATGGTTAAATCACATGTGTCGTACTAA
1 GTGTGTAGTACTAAGTGCT-GGCTAATACATGTACCAGATGGATAAATCACATGTGTAGTACTAA
57781209 GTGCAGGCTACTACATGTACC
65 GTGCAGGCTACTACATGTACC
57781230 AGATTGATAG
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
100 1 0.01
101 70 0.99
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTGCTGGCTAATACATGTACCAGATGGATAAATCACATGTGTAGTACTAAG
TGCAGGCTACTACATGTACCCGTTAACTTCGATCAT
Found at i:57781319 original size:151 final size:151
Alignment explanation
Indices: 57781040--57781319 Score: 499
Period size: 151 Copynumber: 1.9 Consensus size: 151
57781030 TCGTTGTGAG
* * * *
57781040 TCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
57781105 TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
66 TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
57781170 TACATGTATCAGATGGTTAAA
131 TACATGTATCAGATGGTTAAA
*
57781191 TCACATGTGTCGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
57781256 TAAGTGTAGGCTACTATGTGTACCCGTTAACCTT-GATCATGTGTGTAGTACTAAGTGTAGGCTA
66 TAAGTGTAGGCTACTATGTGTACCCGTTAA-CTTCGATCATGTGTGTAGTACTAAGTGTAGGCTA
57781320 CTACTTATAC
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
151 120 0.98
152 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (151 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
TACATGTATCAGATGGTTAAA
Found at i:57781350 original size:151 final size:151
Alignment explanation
Indices: 57781040--57781372 Score: 488
Period size: 151 Copynumber: 2.2 Consensus size: 151
57781030 TCGTTGTGAG
* * * *
57781040 TCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
57781105 TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
66 TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
* * *
57781170 TACATGTATCAGATGGTTAAA
131 TACATATACCAGATGGATAAA
*
57781191 TCACATGTGTCGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
57781256 TAAGTGTAGGCTACTATGTGTACCCGTTAACCTT-GATCATGTGTGTAGTACTAAGTGTAGGCTA
66 TAAGTGTAGGCTACTATGTGTACCCGTTAA-CTTCGATCATGTGTGTAGTACTAAGTGTAGGCTA
* * * * **
57781320 CTACTTATACCATATTGATAGG
130 ATACATATACCAGATGGATAAA
*** *
57781342 TTGTATGTGTAGTACTAAGTGTAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
57781373 TGCATACCAG
Statistics
Matches: 162, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
151 159 0.98
152 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33
Consensus pattern (151 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGTAGGCTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTAGGCTAA
TACATATACCAGATGGATAAA
Found at i:57781604 original size:16 final size:16
Alignment explanation
Indices: 57781583--57781614 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57781573 AGAATGGAGT
57781583 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
57781599 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
57781615 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:57784889 original size:15 final size:15
Alignment explanation
Indices: 57784869--57784907 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
57784859 TATGATATTG
57784869 TATCTTGGATTTC-C
1 TATCTTGGATTTCTC
*
57784883 TTATCTTTGATTTCTC
1 -TATCTTGGATTTCTC
57784899 TATCTTGGA
1 TATCTTGGA
57784908 GATCTTGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 20 0.95
16 1 0.05
ACGTcount: A:0.15, C:0.18, G:0.13, T:0.54
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:57791376 original size:28 final size:28
Alignment explanation
Indices: 57791279--57791392 Score: 119
Period size: 27 Copynumber: 4.2 Consensus size: 28
57791269 AGCATGGCTG
* * *
57791279 CCAG-AACAGATA-TTGTGACAGAGTCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
* * *
57791305 CCAGATACAGATA-TTGTGGTAGAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
*
57791332 CCAG-AACAGATATTTGTGGCGTAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
* *
57791359 TCAGAAACAGATGTTTGTGGCATAGCCA
1 CCAGAAACAGATATTTGTGGCATAGCCA
57791387 CCAGAA
1 CCAGAA
57791393 CGCTTCCTCC
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
26 11 0.15
27 36 0.49
28 26 0.36
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCATAGCCA
Found at i:57791389 original size:55 final size:53
Alignment explanation
Indices: 57791279--57791393 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 53
57791269 AGCATGGCTG
* * *
57791279 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGTAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
* * * *
57791332 CCAGAACAGATATTTGTGGC-GTAGCCATCAGAAACAGATGTTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCACCAGAAACAGAT-ATTGTGGCAGAGCCA
57791387 CCAGAAC
1 CCAGAAC
57791394 GCTTCCTCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 13 0.25
54 20 0.38
55 19 0.37
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTGTGGCAGAGCCA
Found at i:57795871 original size:46 final size:46
Alignment explanation
Indices: 57795821--57795989 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
57795811 TGAGCATCCA
57795821 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * * *
57795867 AACTCGTTGAGTTGGGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
57795914 AACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAATGGCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
57795960 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
57795990 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 55 0.55
47 27 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:57795973 original size:93 final size:93
Alignment explanation
Indices: 57795814--57795984 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
57795804 GGATGGTTGA
* *
57795814 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAATGGCCGAACTCGTTGAGT
*
57795879 TGGGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
57795907 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAATGGCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAATGGCCGAACTCGTTGAGT
57795972 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57795985 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAATGGCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:57801401 original size:46 final size:46
Alignment explanation
Indices: 57801351--57801523 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
57801341 TGGTTGAGCA
57801351 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
57801397 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57801442 CATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
57801490 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
57801524 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57801507 original size:93 final size:93
Alignment explanation
Indices: 57801348--57801518 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57801338 GGATGGTTGA
*
57801348 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
57801413 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
57801441 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
57801506 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
57801519 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Done.