Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 183 of 316
Found at i:58979108 original size:25 final size:25
Alignment explanation
Indices: 58979049--58979108 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
58979039 ATTTTCATAT
*
58979049 ATAAATAATATTTATAGTAAAATAA
1 ATAAATTATATTTATAGTAAAATAA
* *
58979074 AT-ACTGTATA-TTATATTTAAAATAA
1 ATAAAT-TATATTTATA-GTAAAATAA
58979099 ATAAATTATA
1 ATAAATTATA
58979109 AAGAGAGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
24 7 0.25
25 19 0.68
26 2 0.07
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (25 bp):
ATAAATTATATTTATAGTAAAATAA
Found at i:58980694 original size:27 final size:27
Alignment explanation
Indices: 58980654--58980708 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
58980644 AATACAGAGA
58980654 CGCCAAATCCGCTATTTTCGATCTGCT
1 CGCCAAATCCGCTATTTTCGATCTGCT
*
58980681 CGCCAAATCTGCTATTTTCGATCTGCT
1 CGCCAAATCCGCTATTTTCGATCTGCT
58980708 C
1 C
58980709 TCTGATAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.18, C:0.33, G:0.15, T:0.35
Consensus pattern (27 bp):
CGCCAAATCCGCTATTTTCGATCTGCT
Found at i:58980727 original size:71 final size:71
Alignment explanation
Indices: 58980611--58980752 Score: 214
Period size: 71 Copynumber: 2.0 Consensus size: 71
58980601 ACTCAGGAAT
* * *
58980611 GCCAAATCTGTTATTTTCGATATGCCCTCTGCTAATACAGAGACGCCAAATCCG-CTATTTTCGA
1 GCCAAATCTGCTATTTTCGATATGCCCTCTGATAATACAGAGACGCCAAATCCGTC-ATCTTCGA
58980675 TCTGCTC
65 TCTGCTC
* * *
58980682 GCCAAATCTGCTATTTTCGATCTGCTCTCTGATAATACAGAGACGCCAAATCTGTCATCTTCGAT
1 GCCAAATCTGCTATTTTCGATATGCCCTCTGATAATACAGAGACGCCAAATCCGTCATCTTCGAT
58980747 CTGCTC
66 CTGCTC
58980753 TCTAACAATC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
71 63 0.98
72 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.32
Consensus pattern (71 bp):
GCCAAATCTGCTATTTTCGATATGCCCTCTGATAATACAGAGACGCCAAATCCGTCATCTTCGAT
CTGCTC
Found at i:58980745 original size:44 final size:44
Alignment explanation
Indices: 58980681--58981127 Score: 529
Period size: 44 Copynumber: 10.4 Consensus size: 44
58980671 TCGATCTGCT
* *
58980681 CGCCAAATCTGCTATTTTCGATCTGCTCTCTGATAATACAGAGA
1 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
*
58980725 CGCCAAATCTG-TCATCTTCGATCTGCTCTCTAACAAT-CAGAGA
1 CGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGACAATACAGAGA
* * *
58980768 CGCCAAATCTGATATCTTCGATCTACTCTCTGACAATACGGAGA
1 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
* * *
58980812 CGCCAAATCTGCTATTTTTGATTTGCTCTCTGACAATACAGAGA
1 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
* * *
58980856 CG-CAAATCAGCTATCTTCGATCTACTTTCTGACAATACAGAGA
1 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
* * *
58980899 CTCCAAATCAGCTATCTTCGATCTGCTCTCTAACAATACAGAGA
1 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
* * * *
58980943 CGCCAAATCCGCTATCTTTGATCTACTCTCTGAAAATACAGAGA
1 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
*
58980987 CGCCAAA--T-CT-T-TT--ATCTGCTTTCT-ATCAATACAGAGA
1 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGA-CAATACAGAGA
* * * *
58981024 CACCAAATTTGATATCTTCGATCTTCTCTCTGACAATACAGAGA
1 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
* ** *
58981068 TGCCAAATCTATTATCTTTGATCTGCTCTCTGACAATACAGAGA
1 CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
* *
58981112 CACCAAATCGGCTATC
1 CGCCAAATCTGCTATC
58981128 AGTGATCTAC
Statistics
Matches: 342, Mismatches: 48, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
36 1 0.00
37 25 0.07
39 3 0.01
40 2 0.01
41 3 0.01
42 2 0.01
43 76 0.22
44 229 0.67
45 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (44 bp):
CGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
Found at i:58980839 original size:87 final size:88
Alignment explanation
Indices: 58980681--58981127 Score: 554
Period size: 87 Copynumber: 5.2 Consensus size: 88
58980671 TCGATCTGCT
* * * *
58980681 CGCCAAATCTGCTATTTTCGATCTGCTCTCTGATAATACAGAGACGCCAAATCTG-TCATCTTCG
1 CGCCAAATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCT-ATCTTTG
58980745 ATCTGCTCTCTAACAAT-CAGAGA
65 ATCTGCTCTCTAACAATACAGAGA
* * *
58980768 CGCCAAATCTGATATCTTCGATCTACTCTCTGACAATACGGAGACGCCAAATCTGCTATTTTTGA
1 CGCCAAATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGA
* *
58980833 TTTGCTCTCTGACAATACAGAGA
66 TCTGCTCTCTAACAATACAGAGA
* * * * *
58980856 CG-CAAATCAGCTATCTTCGATCTACTTTCTGACAATACAGAGACTCCAAATCAGCTATCTTCGA
1 CGCCAAATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGA
58980920 TCTGCTCTCTAACAATACAGAGA
66 TCTGCTCTCTAACAATACAGAGA
* * *
58980943 CGCCAAATCCGCTATCTTTGATCTACTCTCTGAAAATACAGAGACGCCAAA--T-C--T-TTT-A
1 CGCCAAATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGA
* *
58981001 TCTGCTTTCTATCAATACAGAGA
66 TCTGCTCTCTAACAATACAGAGA
* * * * * **
58981024 CACCAAATTTGATATCTTCGATCTTCTCTCTGACAATACAGAGATGCCAAATCTATTATCTTTGA
1 CGCCAAATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGA
*
58981089 TCTGCTCTCTGACAATACAGAGA
66 TCTGCTCTCTAACAATACAGAGA
* *
58981112 CACCAAATCGGCTATC
1 CGCCAAATCTGCTATC
58981128 AGTGATCTAC
Statistics
Matches: 307, Mismatches: 43, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
81 65 0.21
82 2 0.01
83 2 0.01
85 1 0.00
86 1 0.00
87 150 0.49
88 86 0.28
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (88 bp):
CGCCAAATCTGCTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTTGA
TCTGCTCTCTAACAATACAGAGA
Found at i:58980915 original size:131 final size:130
Alignment explanation
Indices: 58980681--58981127 Score: 563
Period size: 131 Copynumber: 3.5 Consensus size: 130
58980671 TCGATCTGCT
*
58980681 CGCCAAATCTGCTAT-TTTCGATCTGCTCTCTGATAATACAGAGACGCCAAATCTG-TCATCTTC
1 CGCCAAATCTGCTATCTTT-GATCTGCTCTCTGACAATACAGAGACGCCAAATC-GCT-ATCTTC
* * *
58980744 GATCTGCTCTCTAACAAT-CAGAGACGCCAAATCTGATATCTTCGATCTACTCTCTGACAATACG
63 GATCTGCTTTCT-ACAATACAGAGACACCAAATCTGATATCTTCGATCTACTCTCTGACAATACA
58980808 GAGA
127 GAGA
* *
58980812 CGCCAAATCTGCTATTTTTGATTTGCTCTCTGACAATACAGAGACG-CAAATCAGCTATCTTCGA
1 CGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATC-GCTATCTTCGA
* * * * * *
58980876 TCTACTTTCTGACAATACAGAGACTCCAAATCAGCTATCTTCGATCTGCTCTCTAACAATACAGA
65 TCTGCTTTCT-ACAATACAGAGACACCAAATCTGATATCTTCGATCTACTCTCTGACAATACAGA
58980941 GA
129 GA
* * *
58980943 CGCCAAATCCGCTATCTTTGATCTACTCTCTGAAAATACAGAGACGCCAAAT--CT-T-TT--AT
1 CGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCGCTATCTTCGAT
* *
58981002 CTGCTTTCTATCAATACAGAGACACCAAATTTGATATCTTCGATCTTCTCTCTGACAATACAGAG
66 CTGCTTTCTA-CAATACAGAGACACCAAATCTGATATCTTCGATCTACTCTCTGACAATACAGAG
58981067 A
130 A
* ** *
58981068 TGCCAAATCTATTATCTTTGATCTGCTCTCTGACAATACAGAGACACCAAATCGGCTATC
1 CGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATC-GCTATC
58981128 AGTGATCTAC
Statistics
Matches: 275, Mismatches: 31, Indels: 21
0.84 0.09 0.06
Matches are distributed among these distances:
124 1 0.00
125 104 0.38
127 2 0.01
128 3 0.01
129 3 0.01
130 28 0.10
131 126 0.46
132 8 0.03
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (130 bp):
CGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCGCTATCTTCGAT
CTGCTTTCTACAATACAGAGACACCAAATCTGATATCTTCGATCTACTCTCTGACAATACAGAGA
Found at i:58981017 original size:81 final size:81
Alignment explanation
Indices: 58980919--58981120 Score: 233
Period size: 81 Copynumber: 2.4 Consensus size: 81
58980909 GCTATCTTCG
* * *
58980919 ATCTGCTCTCTAACAATACAGAGACGCCAAATCCGCTATCTTTGATCTACTCTCTGAAAATACAG
1 ATCTGCTCTCTAACAATACAGAGACACCAAATCCGATATCTTCGATCTACTCTCTGAAAATACAG
*
58980984 AGACGCCAAATCTTTT
66 AGACGCCAAATCTATT
* * ** * *
58981000 ATCTGCTTTCTATCAATACAGAGACACCAAATTTGATATCTTCGATCTTCTCTCTGACAATACAG
1 ATCTGCTCTCTAACAATACAGAGACACCAAATCCGATATCTTCGATCTACTCTCTGAAAATACAG
*
58981065 AGATGCCAAATCTATTATCTTT
66 AGACGCCAAATC---TA---TT
*
58981087 GATCTGCTCTCTGACAATACAGAGACACCAAATC
1 -ATCTGCTCTCTAACAATACAGAGACACCAAATC
58981121 GGCTATCAGT
Statistics
Matches: 99, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
81 67 0.68
84 1 0.01
87 2 0.02
88 29 0.29
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (81 bp):
ATCTGCTCTCTAACAATACAGAGACACCAAATCCGATATCTTCGATCTACTCTCTGAAAATACAG
AGACGCCAAATCTATT
Found at i:58983219 original size:20 final size:19
Alignment explanation
Indices: 58983170--58983221 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
58983160 TTTAAAGGTT
58983170 ATAAAAGT-AATT-AGTAA
1 ATAAAAGTAAATTAAGTAA
* *
58983187 ATAAATGACAAATTAAGTAA
1 ATAAAAG-TAAATTAAGTAA
58983207 ATTAAAAGTAAATTA
1 A-TAAAAGTAAATTA
58983222 GTATCATCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
17 6 0.22
19 4 0.15
20 12 0.44
21 5 0.19
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.29
Consensus pattern (19 bp):
ATAAAAGTAAATTAAGTAA
Found at i:58984163 original size:25 final size:24
Alignment explanation
Indices: 58984133--58984215 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 24
58984123 TAACTTGTGT
58984133 GAGCATACCGATTTACTACTCGTGA
1 GAGCATACCGATTTAC-ACTCGTGA
* * * *
58984158 GAGCATACCAATCTACAGCTCGAGT
1 GAGCATACCGATTTACA-CTCGTGA
* *
58984183 GAGCATACTGATTCACAACTCGT-A
1 GAGCATACCGATTTAC-ACTCGTGA
58984207 TGAGCATAC
1 -GAGCATAC
58984216 ATGTACAGGA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
24 1 0.02
25 43 0.96
26 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (24 bp):
GAGCATACCGATTTACACTCGTGA
Found at i:58985942 original size:45 final size:45
Alignment explanation
Indices: 58985886--58985972 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
58985876 GAATTATGTA
*
58985886 ATCTGAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTAAC
1 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTAAC
58985931 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGT
1 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGT
58985973 GACACATGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.25, C:0.11, G:0.23, T:0.40
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTAAC
Found at i:58992691 original size:20 final size:20
Alignment explanation
Indices: 58992668--58992714 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
58992658 GGGTTAAGAT
*
58992668 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
58992688 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
58992708 TGAGCTG
1 TGAGCTG
58992715 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:58994441 original size:48 final size:48
Alignment explanation
Indices: 58994385--58994490 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
58994375 TTGTCTTTTC
*
58994385 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
58994433 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
58994481 TTTCTTTTTC
1 TTTCTTTTTC
58994491 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:58995625 original size:16 final size:16
Alignment explanation
Indices: 58995606--58995650 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
58995596 TTAAACTTGA
58995606 TTTTTTTTTGCTCACC
1 TTTTTTTTTGCTCACC
* ***
58995622 TTTTTTTTTTCTTTTC
1 TTTTTTTTTGCTCACC
58995638 TTTTTTTTTGCTC
1 TTTTTTTTTGCTC
58995651 GATTTTTTTC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.76
Consensus pattern (16 bp):
TTTTTTTTTGCTCACC
Found at i:58997215 original size:20 final size:20
Alignment explanation
Indices: 58997192--58997238 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
58997182 GGGTTAAGAT
*
58997192 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
58997212 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
58997232 TGAGCTG
1 TGAGCTG
58997239 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:58998692 original size:20 final size:21
Alignment explanation
Indices: 58998642--58998716 Score: 84
Period size: 20 Copynumber: 3.6 Consensus size: 21
58998632 AAACTATATA
58998642 TAGTTTAATTAAGCATAATCAATT
1 TAGTTTAATTAA-CATAATC--TT
58998666 TAGTTTAATTAACATAATCTT
1 TAGTTTAATTAACATAATCTT
*
58998687 TA-TTTAATTAACTTAA-C-T
1 TAGTTTAATTAACATAATCTT
*
58998705 TATTTTAATTAA
1 TAGTTTAATTAA
58998717 AGCTTATGTT
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
18 3 0.06
19 10 0.20
20 13 0.27
21 4 0.08
23 7 0.14
24 12 0.24
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (21 bp):
TAGTTTAATTAACATAATCTT
Found at i:59000055 original size:39 final size:39
Alignment explanation
Indices: 59000012--59000137 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
59000002 GGACTTTAGC
* * * *
59000012 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
59000051 CCGGATATAATTCTAGTACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
59000090 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
59000129 TCGGATATA
1 CCGGATATA
59000138 CATCACTGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:59001532 original size:19 final size:21
Alignment explanation
Indices: 59001494--59001533 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
59001484 AAAGTATATG
*
59001494 GATTTAACAAAGTCAAAATAA
1 GATTTAACAAAGTAAAAATAA
59001515 GATTTAA-AAA-TAAAAATAA
1 GATTTAACAAAGTAAAAATAA
59001534 AATAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 3 0.17
21 7 0.39
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.25
Consensus pattern (21 bp):
GATTTAACAAAGTAAAAATAA
Found at i:59005850 original size:26 final size:26
Alignment explanation
Indices: 59005782--59005850 Score: 75
Period size: 26 Copynumber: 2.7 Consensus size: 26
59005772 ATCCCTATTT
* ** *
59005782 ATTTTACCCCCAACAAAATTTTGACG
1 ATTTTACCCCTAGTAAAATTTTGACA
*
59005808 ATTTTACCCCTGGTAAAATTTTGACA
1 ATTTTACCCCTAGTAAAATTTTGACA
* *
59005834 ATTTTGCCCCTATTAAA
1 ATTTTACCCCTAGTAAA
59005851 TTTCAAGAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACA
Found at i:59009998 original size:11 final size:11
Alignment explanation
Indices: 59009984--59010008 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
59009974 GTGAAGAAGA
59009984 AATGAAGAGTG
1 AATGAAGAGTG
59009995 AATGAAGAGTG
1 AATGAAGAGTG
59010006 AAT
1 AAT
59010009 TGAGGTCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.20
Consensus pattern (11 bp):
AATGAAGAGTG
Found at i:59029514 original size:26 final size:26
Alignment explanation
Indices: 59029455--59029516 Score: 83
Period size: 25 Copynumber: 2.4 Consensus size: 26
59029445 ATTTAATAAA
59029455 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCT-AGTATGAAAATTACCATT
*
59029482 TTA-CCCTAG-ATGCAAAATTACCATT
1 ATACCCCTAGTATG-AAAATTACCATT
59029507 ATACCCCTAG
1 ATACCCCTAG
59029517 GGTTAATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 3 0.10
25 16 0.52
26 10 0.32
27 2 0.06
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (26 bp):
ATACCCCTAGTATGAAAATTACCATT
Found at i:59029653 original size:28 final size:28
Alignment explanation
Indices: 59029620--59029707 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
59029610 GGAGGAAGCG
59029620 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
59029648 TTCTGGTGGCTATTCCATAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* ** * *
59029676 ATCTGGTAACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
59029702 TTCTGG
1 TTCTGG
59029708 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.10
27 8 0.16
28 37 0.74
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:59030158 original size:9 final size:10
Alignment explanation
Indices: 59030135--59030169 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
59030125 ATAAGGCCGC
*
59030135 TTTAATTATT
1 TTTAATTACT
59030145 TTTAATTA-T
1 TTTAATTACT
59030154 TTTAATTACT
1 TTTAATTACT
59030164 TTTAAT
1 TTTAAT
59030170 ATGTTTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTAATTACT
Found at i:59037368 original size:26 final size:26
Alignment explanation
Indices: 59037318--59037381 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 26
59037308 ATTTACTAAA
* *
59037318 ATACCCCTAAGTATAAAAATTACCATT
1 ATACCCCTAGGT-GAAAAATTACCATT
*
59037345 TTACCCCTAGGTGAAAAATTACCATT
1 ATACCCCTAGGTGAAAAATTACCATT
59037371 ATACCCCTAGG
1 ATACCCCTAGG
59037382 GTTAATTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 23 0.70
27 10 0.30
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28
Consensus pattern (26 bp):
ATACCCCTAGGTGAAAAATTACCATT
Found at i:59037557 original size:28 final size:27
Alignment explanation
Indices: 59037483--59037570 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
59037473 TGGAGGAAGC
59037483 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
59037510 ATTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * *
59037537 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
59037564 GTTCTGG
1 GTTCTGG
59037571 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.09
27 36 0.65
28 14 0.25
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:59043025 original size:43 final size:42
Alignment explanation
Indices: 59042928--59043037 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
59042918 GACTTTTGTT
* * * *
59042928 TTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGA
1 TTACGTGTAAGACCCTGTCTGGGACAGTGACATCGTATTTGA
* *
59042970 TTTCGTGTAAGACCCTGTCTGGGACAGTGACATCGATGTTTGA
1 TTACGTGTAAGACCCTGTCTGGGACAGTGACATCG-TATTTGA
*
59043013 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACGTGTAAGACC-CTGTCTGGGAC
59043038 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 30 0.52
43 27 0.47
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCCTGTCTGGGACAGTGACATCGTATTTGA
Found at i:59051563 original size:19 final size:20
Alignment explanation
Indices: 59051524--59051564 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
59051514 TTGCATAAGT
* *
59051524 TGTAAAATAGGTGATAAATG
1 TGTAAAATAGATGAGAAATG
59051544 TGTAAAATA-ATGAGAAATG
1 TGTAAAATAGATGAGAAATG
59051563 TG
1 TG
59051565 GGCTGTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (20 bp):
TGTAAAATAGATGAGAAATG
Found at i:59052370 original size:47 final size:47
Alignment explanation
Indices: 59052013--59052372 Score: 160
Period size: 47 Copynumber: 7.6 Consensus size: 47
59052003 TTATTTGTAT
59052013 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-AT-GA-GA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATGGATGA
* *
59052059 GCCAGTGTAAGACCATGTCTGGGAAATGGCATCAGAATTGA--GATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGAT--GA
* * * * * *
59052107 GCTAATGTAAGA-CATGCCTGGGACAT-GCATCAACCTCGAGATGG-TAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CT--TGATGGATGA
* * * * *
59052154 GCCAGTGTAAGA-CATGTGTGGCACAT-GTATCGAC-T-ACGAGATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATG-GATGA
* * *
59052198 GTCAGTGTAAGGCCATGTCTGGGACATGGCATAAC-AC-AGATATGTGA-GA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCAT--CGACTTG--ATG-GATGA
* * * * * * * ** **
59052247 TCTAGTATAAGACCATGTCTGGGACATGGCGTTGGCCTCGATTTCAAAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGC-ATCGACTTGA-TGGATGA
*** *
59052296 TTTAGTGTAAGACCATGTCTGGCACATGGCATCGACTTGATGGATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGA
59052343 GCCAGTGTAAGACCATGTCTGGGACATGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGC
59052373 GTCAGCATTA
Statistics
Matches: 231, Mismatches: 58, Indels: 49
0.68 0.17 0.14
Matches are distributed among these distances:
42 2 0.01
43 1 0.00
44 11 0.05
45 17 0.07
46 24 0.10
47 83 0.36
48 29 0.13
49 57 0.25
50 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGA
Found at i:59058533 original size:29 final size:29
Alignment explanation
Indices: 59058491--59058599 Score: 136
Period size: 29 Copynumber: 3.9 Consensus size: 29
59058481 TGGGAAGTAG
**
59058491 TTGGGCCCGATGGGCCATATGAATGTGAT
1 TTGGGCCTAATGGGCCATATGAATGTGAT
*
59058520 TTGGGCCTAATGGGCCATACGAATGTGAT
1 TTGGGCCTAATGGGCCATATGAATGTGAT
59058549 TTGGGCC-AATGGGCCATATGAA--TGA-
1 TTGGGCCTAATGGGCCATATGAATGTGAT
* * *
59058574 GTGGGCCTAGTGGGCCATATGCATGT
1 TTGGGCCTAATGGGCCATATGAATGT
59058600 ATGTAGACTT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
25 6 0.09
26 16 0.23
28 15 0.21
29 33 0.47
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATGTGAT
Found at i:59058921 original size:27 final size:27
Alignment explanation
Indices: 59058891--59059267 Score: 360
Period size: 27 Copynumber: 14.1 Consensus size: 27
59058881 TAATAATGAT
*
59058891 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
59058918 AAATTACCGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
59058945 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
59058971 AAATTA-TCGAAATACCCCCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
59058998 AAATTA-TCGAAATATCCTCGATTTGT-
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
59059024 AAATTA-TCAAAACACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
59059051 AAATTATTGAAACACCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
59059078 AAATTA-TCGAAATACCTTCGATTTATA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
59059105 AAATTA-TCGAAACACCTTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
59059132 AAATTA-TCGAAATATCCCT-AATTTGTA
1 AAATTACT-GAAATA-CCCTCGATTTGTA
* * *
59059159 AAATTACTAAAATACCCT-TAATTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
59059185 AAATTTCTTAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
59059212 AAATTACTAAAATACCCTCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
59059239 AAATTACCGAAACACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
59059266 AA
1 AA
59059268 CAATTTGTAA
Statistics
Matches: 302, Mismatches: 40, Indels: 16
0.84 0.11 0.04
Matches are distributed among these distances:
26 71 0.24
27 226 0.75
28 5 0.02
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:59058995 original size:53 final size:54
Alignment explanation
Indices: 59058891--59059375 Score: 432
Period size: 54 Copynumber: 8.8 Consensus size: 54
59058881 TAATAATGAT
* * *
59058891 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * * *
59058945 AAATTACCGAAATACCCTCGA-TTGTGAAATTATCGAAATACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * *
59058998 AAATTA-TCGAAATATCCTCGATTTGT-AAATTATCAAAACACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * * * *
59059051 AAATTATTGAAACACCTTCGATTTGTAAAATTATCGAAATACCTTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * *
59059105 AAATTA-TCGAAACACCTTCGATTTGTAAAATTATCGAAATATCCCT-AATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTATCGAAATA-CCCTCGATTTGTA
* * * * *
59059159 AAATTACTAAAATACCCT-TAATTGTAAAATT-TCTTAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTA
* * * * *
59059212 AAATTACTAAAATACCCTCGATTTGTGAAATTACCGAAACACCCTTGATTTGTAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGT-A
* * *
59059267 ACAATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTA-CTGAAACACCCTCGATTTGTA
1 A-AA--T-T---A--CT-GAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTCGATTTGTA
* * *
59059331 AAATTATCT-AAATACCCTTG-TAGTGTAAAATTACCGAAATACCCT
1 AAATTA-CTGAAATACCCTCGAT-TTGTAAAATTATCGAAATACCCT
59059376 TGTAGTATAA
Statistics
Matches: 360, Mismatches: 46, Indels: 50
0.79 0.10 0.11
Matches are distributed among these distances:
52 6 0.02
53 132 0.37
54 159 0.44
55 8 0.02
56 4 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 1 0.00
62 1 0.00
63 2 0.01
64 4 0.01
65 39 0.11
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
Found at i:59059024 original size:80 final size:81
Alignment explanation
Indices: 59058900--59059375 Score: 408
Period size: 80 Copynumber: 5.8 Consensus size: 81
59058890 TAAATTACTA
* *
59058900 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCG
*
59058965 A-TTGTGAAATTATCG
66 ATTTGTAAAATTATCG
* * * * * *
59058980 AAATACCCCCAATTTGTAAAATTATCGAAATATCCTCGATTTGT-AAATTATCAAAACACCCTCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCG
*
59059044 ATTTGTAAAATTATTG
66 ATTTGTAAAATTATCG
* * * * * * *
59059060 AAACACCTTCGATTTGTAAAATTATCGAAATACCTTCGATTTATAAAATTATCGAAACACCTTCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCG
59059125 ATTTGTAAAATTATCG
66 ATTTGTAAAATTATCG
* ** * * * ** * *
59059141 AAATATCCCT-AATTTGTAAAATTACTAAAATACCCT-TAATTGTAAAATTTCTTAAATACCCTT
1 AAATA-CCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCCTC
*
59059204 GATTTGTAAAATTA-CTA
65 GATTTGTAAAATTATC-G
* * * *
59059221 AAATACCCTCGATTTGTGAAATTACCGAAACACCCTTGATTTGTAAACAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCC--------T---CGATTTGTAAAATTACCG
* *
59059286 AAATACCCTCAATTTGTAAAATTA-CTG
55 AAACACCCTCGATTTGTAAAATTATC-G
* * * * * *
59059313 AAACACCCTCGATTTGTAAAATTATCTAAATACCCTTG-TAGTGTAAAATTACCGAAATACCCT
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGAT-TTGTAAAATTACCGAAACACCCT
59059376 TGTAGTATAA
Statistics
Matches: 317, Mismatches: 61, Indels: 35
0.77 0.15 0.08
Matches are distributed among these distances:
79 23 0.07
80 145 0.46
81 79 0.25
82 3 0.01
84 1 0.00
88 1 0.00
92 65 0.21
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.34
Consensus pattern (81 bp):
AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAACACCCTCG
ATTTGTAAAATTATCG
Found at i:59059288 original size:38 final size:38
Alignment explanation
Indices: 59059232--59059305 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
59059222 AATACCCTCG
* **
59059232 ATTTGTGAAATTACCGAAACACCCTTGATTTGTAAACA
1 ATTTGTAAAATTACCGAAACACCCTCAATTTGTAAACA
* *
59059270 ATTTGTAAAATTATCGAAATACCCTCAATTTGTAAA
1 ATTTGTAAAATTACCGAAACACCCTCAATTTGTAAA
59059306 ATTACTGAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (38 bp):
ATTTGTAAAATTACCGAAACACCCTCAATTTGTAAACA
Found at i:59059298 original size:27 final size:27
Alignment explanation
Indices: 59059268--59059375 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 27
59059258 GATTTGTAAA
59059268 CAATTTGTAAAATTATCGAAATACCCT
1 CAATTTGTAAAATTATCGAAATACCCT
*
59059295 CAATTTGTAAAATTA-CTGAAACACCCT
1 CAATTTGTAAAATTATC-GAAATACCCT
* *
59059322 CGATTTGTAAAATTATCTAAATACCCT
1 CAATTTGTAAAATTATCGAAATACCCT
** * *
59059349 -TGTAGTGTAAAATTACCGAAATACCCT
1 CAAT-TTGTAAAATTATCGAAATACCCT
59059376 TGTAGTATAA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.03
27 66 0.96
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
CAATTTGTAAAATTATCGAAATACCCT
Found at i:59059309 original size:65 final size:65
Alignment explanation
Indices: 59059205--59059332 Score: 195
Period size: 65 Copynumber: 2.0 Consensus size: 65
59059195 AATACCCTTG
* * *
59059205 ATTTGTAAAATTACTAAAATACCCTCGATTTGTGAAATTACCGAAACACCCTTGATTTGTAAACA
1 ATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAACA
* *
59059270 ATTTGTAAAATTA-TCGAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAA
1 ATTTGTAAAATTACT-AAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAA
59059333 ATTATCTAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 1 0.02
65 56 0.98
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (65 bp):
ATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTTGTAAACA
Found at i:59059348 original size:92 final size:92
Alignment explanation
Indices: 59059180--59059350 Score: 245
Period size: 92 Copynumber: 1.9 Consensus size: 92
59059170 ATACCCTTAA
* ** * *
59059180 TTGTAAAATTTCTTAAATACCCTTGATTTGTAAAATTACTAAAATACCCTCGATTTGTGAAATTA
1 TTGTAAAATTTCTGAAATACCCTCAATTTGTAAAATTACTAAAACACCCTCGATTTGTAAAATTA
59059245 CCGAAACACCCTTGATTTGTAAACAAT
66 CCGAAACACCCTTGATTTGTAAACAAT
*
59059272 TTGTAAAATTATC-GAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATT
1 TTGTAAAATT-TCTGAAATACCCTCAATTTGTAAAATTACTAAAACACCCTCGATTTGTAAAATT
* * *
59059336 ATCTAAATACCCTTG
65 ACCGAAACACCCTTG
59059351 TAGTGTAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 67 0.97
93 2 0.03
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.35
Consensus pattern (92 bp):
TTGTAAAATTTCTGAAATACCCTCAATTTGTAAAATTACTAAAACACCCTCGATTTGTAAAATTA
CCGAAACACCCTTGATTTGTAAACAAT
Found at i:59059362 original size:119 final size:118
Alignment explanation
Indices: 59059151--59059377 Score: 307
Period size: 119 Copynumber: 1.9 Consensus size: 118
59059141 AAATATCCCT
* * * * *
59059151 AATTTGTAAAATTACTAAAATACCCTTAATTGTAAAATTTCTTAAATACCCTTGATTTGTAAAAT
1 AATTTGTAAAATTACTAAAATACCCTCAATTGTAAAATTACTGAAACACCCTCGATTTGTAAAAT
* *
59059216 TACTAAAATACCCTCGATTTGTGAAATTACCGAAACACCCTTGATTTGTAAAC
66 TACTAAAATACCCTCGATGTGTAAAATTACCGAAACACCCTTGATTTGTAAAC
*
59059269 AATTTGTAAAATTA-TCGAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAA
1 AATTTGTAAAATTACT-AAAATACCCTCAA-TTGTAAAATTACTGAAACACCCTCGATTTGTAAA
* *
59059333 ATTATCT-AAATACCCTTG-TAGTGTAAAATTACCGAAATACCCTTG
64 ATTA-CTAAAATACCCTCGAT-GTGTAAAATTACCGAAACACCCTTG
59059378 TAGTATAAAA
Statistics
Matches: 95, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
117 1 0.01
118 26 0.27
119 66 0.69
120 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (118 bp):
AATTTGTAAAATTACTAAAATACCCTCAATTGTAAAATTACTGAAACACCCTCGATTTGTAAAAT
TACTAAAATACCCTCGATGTGTAAAATTACCGAAACACCCTTGATTTGTAAAC
Found at i:59059376 original size:27 final size:27
Alignment explanation
Indices: 59059273--59059415 Score: 110
Period size: 27 Copynumber: 5.3 Consensus size: 27
59059263 GTAAACAATT
* ** *
59059273 TGTAAAATTATCGAAATACCC-TCAATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * * *
59059300 TGTAAAATTACTGAAACACCCTCG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* *
59059327 TGTAAAATTATCTAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
59059354 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* * * * *
59059381 TATAAAATGACTGACATACCCCTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
59059408 GGTAAAAT
1 TGTAAAAT
59059416 GACTATTTTG
Statistics
Matches: 94, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
27 93 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:59062830 original size:46 final size:46
Alignment explanation
Indices: 59062739--59062905 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
59062729 ACATTATAAG
* *
59062739 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATG-A
1 AGCCAATGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGATGTA
* * *
59062786 GAGCTAATGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATGTA
1 -AGCCAATGTAAGACATGTCTGGGACATGCATCAGCATCGAGATGTA
* * *
59062833 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-TACAAGATGT-
1 AGCCAATGTAAGACATGTCTGGGACATGCATCAGCAT-CGAGATGTA
* *
59062878 -GTCAGTGTAAGACCATGTCTGGGACATG
1 AGCCAATGTAAGA-CATGTCTGGGACATG
59062906 GAATCGGCAT
Statistics
Matches: 105, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
44 11 0.10
45 16 0.15
46 53 0.50
47 14 0.13
48 11 0.10
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGCCAATGTAAGACATGTCTGGGACATGCATCAGCATCGAGATGTA
Found at i:59064623 original size:13 final size:13
Alignment explanation
Indices: 59064605--59064629 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59064595 CCAAACAATA
59064605 AAATTTTCACACG
1 AAATTTTCACACG
59064618 AAATTTTCACAC
1 AAATTTTCACAC
59064630 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:59079124 original size:13 final size:13
Alignment explanation
Indices: 59079106--59079130 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59079096 ACAAACGATA
59079106 AAATTTTCACACG
1 AAATTTTCACACG
59079119 AAATTTTCACAC
1 AAATTTTCACAC
59079131 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:59082798 original size:47 final size:47
Alignment explanation
Indices: 59082735--59083033 Score: 431
Period size: 47 Copynumber: 6.4 Consensus size: 47
59082725 CCCTTCGGGA
* *
59082735 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
59082782 CTTATCACATATATACAGC-TTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACA-CTTTCACATTCATCACATTGGCCATTCGGC
* * * *
59082829 CTTATCTCATATATGCATTTTCACATT-ATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
59082875 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
59082922 CTTATCACATATATACAATTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
59082969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
59083016 CTTATCACATATACACAC
1 CTTATCACATATATACAC
59083034 CTTGTACATC
Statistics
Matches: 224, Mismatches: 25, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
46 39 0.17
47 184 0.82
48 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:59082991 original size:140 final size:141
Alignment explanation
Indices: 59082735--59083033 Score: 438
Period size: 140 Copynumber: 2.1 Consensus size: 141
59082725 CCCTTCGGGA
* * *
59082735 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAG
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACAA
* * * * *
59082800 CTTCACATCCATCACATCGGCCATTAGGTCTTATCTCATATATGCATTTTCACATT-ATCACATT
66 CTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
59082864 GGCCATTCGAC
131 GGCCATTAGAC
* *
59082875 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACAA
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACAA
* * * *
59082940 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 CTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
59083005 GGCCATTAGGC
131 GGCCATTAGAC
*
59083016 CTTATCACATATACACAC
1 CTTATCACATATATACAC
59083034 CTTGTACATC
Statistics
Matches: 141, Mismatches: 17, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
140 108 0.77
141 33 0.23
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACAA
CTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGAC
Found at i:59086667 original size:40 final size:40
Alignment explanation
Indices: 59086598--59086911 Score: 495
Period size: 40 Copynumber: 7.9 Consensus size: 40
59086588 ATTTTGTCCA
* * *
59086598 AGCAAGAATGC-CTTCGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
**
59086637 AGCACGAATGCTCTTTAGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
* * *
59086677 AGCACGAATGCTCTTCGGGACTTAGCCTGGATACATCAGC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
*
59086717 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
59086757 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
*
59086797 AGCACGGATGCTCTTCGGGACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
* * * *
59086837 AGCACGAATGCTCTTCGGGGCCTAGTCCGGATTTATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
59086877 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
59086912 ACATACTGAA
Statistics
Matches: 249, Mismatches: 25, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 10 0.04
40 239 0.96
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACC
Found at i:59088827 original size:47 final size:47
Alignment explanation
Indices: 59088764--59089062 Score: 440
Period size: 47 Copynumber: 6.4 Consensus size: 47
59088754 CCCTTCGGGA
* *
59088764 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
59088811 CTTATCACATATATACAGC-TTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACA-CTTTCACATTCATCACATTGGCCATTCGGC
* * *
59088858 CTTATCTCATATATGCACTTTCACATT-ATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
59088904 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
59088951 CTTATCACATATATACACTTTCACATTCAACACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
59088998 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
59089045 CTTATCACATATACACAC
1 CTTATCACATATATACAC
59089063 CTTGTACATC
Statistics
Matches: 226, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
46 41 0.18
47 184 0.81
48 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:59089017 original size:140 final size:141
Alignment explanation
Indices: 59088764--59089062 Score: 440
Period size: 140 Copynumber: 2.1 Consensus size: 141
59088754 CCCTTCGGGA
* *
59088764 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAG
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACAG
* * * * *
59088829 CTTCACATCCATCACATCGGCCATTAGGTCTTATCTCATATATGCACTTTCACATT-ATCACATT
66 CTTCACATCCAACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
59088893 GGCCATTCGAC
131 GGCCATTAGAC
* *
59088904 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCTTATCACATATATACA-
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACAG
* * *
59088968 CTTTCACATTCAACACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 C-TTCACATCCAACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
*
59089033 CGGCCATTAGGC
130 CGGCCATTAGAC
*
59089045 CTTATCACATATACACAC
1 CTTATCACATATATACAC
59089063 CTTGTACATC
Statistics
Matches: 142, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
139 1 0.01
140 108 0.76
141 33 0.23
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACAG
CTTCACATCCAACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGAC
Found at i:59092486 original size:24 final size:24
Alignment explanation
Indices: 59092459--59092527 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 24
59092449 AAGGCTGTCA
* * *
59092459 GGAGAAGATTTCCTAGCTGATAAG
1 GGAGAGGATTTACGAGCTGATAAG
*
59092483 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTACGAGCTGATAAG
* *
59092507 GGGGAGGATTTAGGAGCTGAT
1 GGAGAGGATTTACGAGCTGAT
59092528 TAGGAGAACG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.30, C:0.07, G:0.39, T:0.23
Consensus pattern (24 bp):
GGAGAGGATTTACGAGCTGATAAG
Found at i:59093550 original size:16 final size:15
Alignment explanation
Indices: 59093524--59093553 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
59093514 ACTAGATCAG
59093524 CGAAAGCCGAAAAGC
1 CGAAAGCCGAAAAGC
59093539 CGAAATGCCGAAAAG
1 CGAAA-GCCGAAAAG
59093554 TCAGTATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.23, G:0.27, T:0.03
Consensus pattern (15 bp):
CGAAAGCCGAAAAGC
Found at i:59095658 original size:40 final size:40
Alignment explanation
Indices: 59095603--59095825 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
59095593 TATTCGGATG
59095603 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
59095643 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
59095686 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
59095726 ATATCCGGGCTAAGT-CCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
59095765 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCAAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
59095805 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
59095826 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
39 47 0.29
40 76 0.47
41 1 0.01
43 37 0.23
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:59111002 original size:31 final size:31
Alignment explanation
Indices: 59110922--59111002 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 31
59110912 TGTCATCCCG
* * *
59110922 GATTGCCCGAGGATGATGACATGCCACCCTG
1 GATTGCCCGAGGATGATGGCATACCACCCTA
* * * *
59110953 GATTGCCTG-GTGACGATGGCTTACCATCCTA
1 GATTGCCCGAG-GATGATGGCATACCACCCTA
59110984 GATTGCCCGAGGATGATGG
1 GATTGCCCGAGGATGATGG
59111003 TTTATCAATT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
30 1 0.03
31 37 0.95
32 1 0.03
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (31 bp):
GATTGCCCGAGGATGATGGCATACCACCCTA
Found at i:59116675 original size:40 final size:40
Alignment explanation
Indices: 59116624--59116899 Score: 464
Period size: 40 Copynumber: 6.9 Consensus size: 40
59116614 ATAACCGCAA
* * * *
59116624 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
59116664 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
59116704 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
59116744 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
59116784 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
59116824 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
59116864 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
59116900 ATGCTCATGC
Statistics
Matches: 222, Mismatches: 14, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 32 0.14
40 190 0.86
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:59127764 original size:94 final size:94
Alignment explanation
Indices: 59127603--59127790 Score: 322
Period size: 94 Copynumber: 2.0 Consensus size: 94
59127593 AATGTGACCG
* * *
59127603 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTACCATATGATAATGAGTTAACATTGGCACTATGTGTGCG
* *
59127668 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGGCACTATGTGTGCAGATTT
*
59127697 TATATGCTATTTGAATTAAGTAAATTACCTTATGATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTACCATATGATAATGAGTTAACATTGGCACTATGTGTGCG
59127762 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGGCACTATGTGTGCAGATTT
59127791 GAATGTCGAT
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 88 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTACCATATGATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGGCACTATGTGTGCAGATTT
Found at i:59146099 original size:31 final size:31
Alignment explanation
Indices: 59146064--59146126 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
59146054 ACCCTTTTTA
59146064 CATAGCTTCCGCCATTATTCATTTAAAACAT
1 CATAGCTTCCGCCATTATTCATTTAAAACAT
59146095 CATAGCTTCCGCCATTATTCATTTAAAACAT
1 CATAGCTTCCGCCATTATTCATTTAAAACAT
59146126 C
1 C
59146127 CTTTGAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (31 bp):
CATAGCTTCCGCCATTATTCATTTAAAACAT
Found at i:59146312 original size:12 final size:11
Alignment explanation
Indices: 59146295--59146382 Score: 56
Period size: 11 Copynumber: 7.7 Consensus size: 11
59146285 AGTAAGTTTT
*
59146295 AAAAAAAATTTG
1 AAAAAAAA-TTC
59146307 AAAAAAAATTC
1 AAAAAAAATTC
59146318 AAAAAAAAAAGTTC
1 --AAAAAAAA-TTC
* *
59146332 -CAAAAAATAC
1 AAAAAAAATTC
*
59146342 GAAAAAAATTC
1 AAAAAAAATTC
59146353 AAAAAAAAAGTT-
1 -AAAAAAAA-TTC
*
59146365 -AAAAAAATTG
1 AAAAAAAATTC
59146375 AAAAAAAA
1 AAAAAAAA
59146383 AATTTGAACA
Statistics
Matches: 62, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
9 2 0.03
10 9 0.15
11 23 0.37
12 15 0.24
13 10 0.16
14 3 0.05
ACGTcount: A:0.73, C:0.06, G:0.06, T:0.16
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:59146327 original size:13 final size:15
Alignment explanation
Indices: 59146307--59146338 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
59146297 AAAAAATTTG
59146307 AAAAAAAA-TT-CAA
1 AAAAAAAAGTTCCAA
59146320 AAAAAAAAGTTCCAA
1 AAAAAAAAGTTCCAA
59146335 AAAA
1 AAAA
59146339 TACGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 2 0.12
15 7 0.41
ACGTcount: A:0.75, C:0.09, G:0.03, T:0.12
Consensus pattern (15 bp):
AAAAAAAAGTTCCAA
Found at i:59146360 original size:22 final size:21
Alignment explanation
Indices: 59146321--59146383 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
59146311 AAAATTCAAA
* *
59146321 AAAAAAAGTTCCAAAAAATACG-
1 AAAAAAA-TT-CAAAAAAAAAGT
59146343 AAAAAAATTCAAAAAAAAAGTT
1 AAAAAAATTCAAAAAAAAAG-T
*
59146365 AAAAAAATTGAAAAAAAAA
1 AAAAAAATTCAAAAAAAAA
59146384 ATTTGAACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 9 0.25
21 2 0.06
22 25 0.69
ACGTcount: A:0.73, C:0.06, G:0.06, T:0.14
Consensus pattern (21 bp):
AAAAAAATTCAAAAAAAAAGT
Found at i:59146383 original size:35 final size:35
Alignment explanation
Indices: 59146307--59146386 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
59146297 AAAAAATTTG
* *
59146307 AAAAAAAATTCAAAAAAAAAAGTTCCAAAAAATAC
1 AAAAAAAATTCAAAAAAAAAAGTTCAAAAAAATAA
*
59146342 GAAAAAAATTC-AAAAAAAAAGTT-AAAAAAATTGAA
1 AAAAAAAATTCAAAAAAAAAAGTTCAAAAAAA-T-AA
59146377 AAAAAAAATT
1 AAAAAAAATT
59146387 TGAACATTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
33 6 0.15
34 13 0.33
35 20 0.51
ACGTcount: A:0.72, C:0.06, G:0.05, T:0.16
Consensus pattern (35 bp):
AAAAAAAATTCAAAAAAAAAAGTTCAAAAAAATAA
Found at i:59150901 original size:40 final size:40
Alignment explanation
Indices: 59150823--59151046 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
59150813 ACCCAAGTAT
* *
59150823 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
59150862 CTTTGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
59150902 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
59150942 CTTTGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
59150985 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
59151025 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
59151047 CATCCGAATA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 11 0.07
40 115 0.71
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:59151019 original size:83 final size:80
Alignment explanation
Indices: 59150823--59151046 Score: 308
Period size: 83 Copynumber: 2.8 Consensus size: 80
59150813 ACCCAAGTAT
* * * *
59150823 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTTGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATAGT
**
59150887 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
59150902 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATAGT
59150966 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
59150985 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTTGGGACTTAGCCCGGATAT
59151047 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 66 0.52
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:59154277 original size:31 final size:31
Alignment explanation
Indices: 59154242--59154304 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 31
59154232 ACCCTTTTTA
59154242 CATAGC-TTCTGCCATTATTCATTTAAAACAT
1 CATAGCTTTC-GCCATTATTCATTTAAAACAT
59154273 CATAGCTTTCGCCATTATTCATTTAAAACAT
1 CATAGCTTTCGCCATTATTCATTTAAAACAT
59154304 C
1 C
59154305 CTTTGAACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 28 0.90
32 3 0.10
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (31 bp):
CATAGCTTTCGCCATTATTCATTTAAAACAT
Found at i:59154479 original size:48 final size:48
Alignment explanation
Indices: 59154408--59154531 Score: 171
Period size: 48 Copynumber: 2.6 Consensus size: 48
59154398 GATATGTGCG
* *
59154408 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC-GA-GAC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCA-ACAGATGAC
* *
59154456 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATATGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACAGATGAC
*
59154504 CTAGTGTAAGACCATGTCTAGGACATGG
1 CTAGTGTAAGACCATGTCTGGGACATGG
59154532 AATTGGCAAG
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
46 2 0.03
47 3 0.04
48 64 0.93
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACAGATGAC
Found at i:59158106 original size:47 final size:47
Alignment explanation
Indices: 59158052--59158994 Score: 1676
Period size: 47 Copynumber: 20.3 Consensus size: 47
59158042 TATTTGAATA
*
59158052 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
59158099 AATGTGAAAGTGTATATATGTGATAAGG-CGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59158145 AATGTGAAA-TGTATATATATGTATAAGG--TAAT-G-CGAT-TGATG
1 AATGTGAAAGTGTATATATGTG-ATAAGGCCTAATGGCCGATGTGATG
59158187 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158234 AATGTGAAAGTGTATATATGTGATAAGGCC-AATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158280 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158329 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158376 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158423 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158470 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158517 AATGTGAAA-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158563 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59158610 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158657 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59158704 AATGTGAAAG-GTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59158750 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59158797 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGG-CGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59158843 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59158890 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59158937 AATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59158983 AATGTGAAAGTG
1 AATGTGAAAGTG
59158995 GCCGATGTGA
Statistics
Matches: 864, Mismatches: 18, Indels: 28
0.95 0.02 0.03
Matches are distributed among these distances:
42 20 0.02
43 14 0.02
44 5 0.01
45 15 0.02
46 242 0.28
47 522 0.60
48 18 0.02
49 28 0.03
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:59158452 original size:94 final size:94
Alignment explanation
Indices: 59158052--59159601 Score: 2047
Period size: 94 Copynumber: 16.8 Consensus size: 94
59158042 TATTTGAATA
*
59158052 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
59158117 TGTGATAAGG-CGAATGGCCAATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
59158145 AATGTGAAA-TGTATATATATGTATAAGG--TAAT-G-CGAT-TGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGTATATATGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
59158204 ATGTGATAAGGCCTAATGGCCGATGTGATG
65 ATGTGATAAGGCCTAATGGCCGATGTGATG
59158234 AATGTGAAAGTGTATATATGTGATAAGGCC-AATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
59158298 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
59158329 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59158394 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
59158423 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59158488 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
59158517 AATGTGAAA-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59158581 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
59158610 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59158675 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
59158704 AATGTGAAAG-GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
59158768 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
59158797 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGG-CGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
59158861 TGTGATAAGGCCTAATGGCTGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
59158890 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG-AAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
59158954 TGTGATAAGGCCTAATGGCCGGTGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
**** * * * * **
59158983 AATGTGAAAGTG-GCCGATGTGATGAATG--TGAA-AG-TG-TAT-AT-ATATGTGATAAG-GCC
1 AATGTGAAAGTGTATATATGTGAT-AAGGCCT-AATGGCCGATGTGATGA-ATGTGA-AAGTGTA
* * * * *
59159039 TA-ATG-GCTGATG--TGAT-G--AATGTGA--
62 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * **
59159063 AA-GTGTATATA-TGTGAT-TA-G-GCCTAATTGCC-GATGTGATGAATGTGA--AA-GTGTATA
1 AATGTG-A-A-AGTGT-ATATATGTG-ATAA-GGCCTAATG-GCCG-ATGTGATGAATGTG-A-A
* * **
59159119 TA-TGTGATA-A-G-GCCTAATGGCC-GATGTGATGAATGTGA--
56 -AGTGT-ATATATGTG-ATAA-GGCCTAATG-GCCG-ATGTGATG
59159157 AA---G--A--GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
59159215 TGTGATAAGGCCGAATGGTCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
59159244 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
59159309 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
59159340 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59159405 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
59159434 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
59159499 TGTGAT-AGGGCTGAATGGCCGATGTGATG
66 TGTGATAAGGCCT-AATGGCCGATGTGATG
* * * * * * *
59159528 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59159593 TGTGATAAG
66 TGTGATAAG
59159602 TCCCGAAGGG
Statistics
Matches: 1316, Mismatches: 69, Indels: 142
0.86 0.05 0.09
Matches are distributed among these distances:
79 3 0.00
80 6 0.00
81 8 0.01
82 7 0.01
83 1 0.00
84 6 0.00
85 25 0.02
86 27 0.02
87 32 0.02
88 49 0.04
89 43 0.03
90 20 0.02
91 9 0.01
92 26 0.02
93 363 0.28
94 507 0.39
95 67 0.05
96 117 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:59158515 original size:22 final size:22
Alignment explanation
Indices: 59158487--59158561 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
59158477 AAGTGTATAT
59158487 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ****
59158509 ATGTGATGAATGTGAAATGTATAT
1 ATGTGAT-AAGGCCTAATG-GCCG
59158533 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
59158555 ATGTGAT
1 ATGTGAT
59158562 GAATGTGAAA
Statistics
Matches: 35, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
22 14 0.40
23 14 0.40
24 7 0.20
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:59158516 original size:141 final size:141
Alignment explanation
Indices: 59158052--59159601 Score: 2047
Period size: 140 Copynumber: 11.2 Consensus size: 141
59158042 TATTTGAATA
*
59158052 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
59158117 TGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAAA-TGTATATATATGTATAAGG--TAAT-
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAAGGCCTAATG
59158177 G-CGAT-TGATG
130 GCCGATGTGATG
59158187 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59158252 TGTGATAAGGCC-AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
59158316 GGCCGATGTGATG
129 GGCCGATGTGATG
59158329 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59158394 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
59158459 CCGATGTGATG
131 CCGATGTGATG
59158470 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59158534 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
59158599 CCGATGTGATG
131 CCGATGTGATG
*
59158610 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
59158675 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTATATATGTGATAAGGCCTAATAG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
59158739 CCGATGTGATG
131 CCGATGTGATG
*
59158750 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
59158815 TGTGATAAGGCCGAATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
59158879 CTGATGTGATG
131 CCGATGTGATG
*
59158890 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG-AAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* **** *
59158954 TGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTG-GCCGATGTGATGAATG--TGAA-
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AAGGCCT-AAT
* * *
59159015 AG-TG-TAT-AT-
129 GGCCGATGTGATG
** * * * * *
59159024 ATATGTGATAAG-GCCTA-ATG-GCTGATG--TGAT-G--AATGTGA--AA-GTGTATATA-TGT
1 A-ATGTGA-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-A-A-AGTGT
* * * * *
59159077 GAT-TA-G-GCCTAATTGCC-GAT-G-TGATGAATG-TGAAAGTGTATATA-TGTGATA-A-G-G
61 -ATATATGTG-ATAA-GGCCTAATGGCCGATG--TGATGAATGTG-A-A-AGTGT-ATATATGTG
* * *
59159131 CCTAATGGCC-GAT-G-TGATGAATG-TG
117 -ATAA-GGCCTAATGGCCGATG--TGATG
*
59159156 -A-----AAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
59159215 TGTGATAAGGCCGAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
59159280 CCAATGTGATG
131 CCGATGTGATG
59159291 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
59159356 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
59159421 GGCCGATGTGATG
129 GGCCGATGTGATG
*
59159434 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
59159499 TGTGAT-AGGGCTGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTG
66 TGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
59159563 GCCAACGTGATG
130 GCCGATGTGATG
* *
59159575 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
59159602 TCCCGAAGGG
Statistics
Matches: 1267, Mismatches: 71, Indels: 148
0.85 0.05 0.10
Matches are distributed among these distances:
124 3 0.00
125 9 0.01
126 14 0.01
127 16 0.01
128 25 0.02
129 9 0.01
130 3 0.00
131 5 0.00
132 13 0.01
133 22 0.02
134 24 0.02
135 125 0.10
136 16 0.01
137 8 0.01
138 11 0.01
139 61 0.05
140 371 0.29
141 286 0.23
142 82 0.06
143 164 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATG
Found at i:59158998 original size:24 final size:24
Alignment explanation
Indices: 59158969--59159018 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
59158959 TAAGGCCTAA
*
59158969 TGGCCGGTGTGATGAATGTGAAAG
1 TGGCCGATGTGATGAATGTGAAAG
59158993 TGGCCGATGTGATGAATGTGAAAG
1 TGGCCGATGTGATGAATGTGAAAG
59159017 TG
1 TG
59159019 TATATATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.26, C:0.08, G:0.40, T:0.26
Consensus pattern (24 bp):
TGGCCGATGTGATGAATGTGAAAG
Found at i:59159041 original size:73 final size:70
Alignment explanation
Indices: 59158925--59159067 Score: 241
Period size: 73 Copynumber: 2.0 Consensus size: 70
59158915 AGGCCTAATA
*
59158925 GCCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGA
1 GCCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
59158990 AAGTG
66 AAGTG
*
59158995 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATG
1 GCCGATGTGATGAATGTG-AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
59159060 TGAAAGTG
63 TGAAAGTG
59159068 TATATATGTG
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
70 18 0.26
71 5 0.07
73 45 0.66
ACGTcount: A:0.30, C:0.08, G:0.33, T:0.29
Consensus pattern (70 bp):
GCCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTG
Found at i:59159073 original size:47 final size:47
Alignment explanation
Indices: 59158993--59159601 Score: 1004
Period size: 47 Copynumber: 12.9 Consensus size: 47
59158983 AATGTGAAAG
59158993 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
* *
59159042 TGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
59159089 TTGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
59159136 TGGCCGATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
59159183 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* *
59159230 TGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
59159277 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
59159326 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
59159373 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
59159420 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* *
59159467 TGGCTGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGGCTGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AA
* * *
59159514 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * * *
59159561 TGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
59159602 TCCCGAAGGG
Statistics
Matches: 528, Mismatches: 28, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 5 0.01
47 450 0.85
48 3 0.01
49 70 0.13
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
Found at i:59159108 original size:120 final size:117
Alignment explanation
Indices: 59158876--59159114 Score: 397
Period size: 120 Copynumber: 2.0 Consensus size: 117
59158866 TAAGGCCTAA
*
59158876 TGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
*
59158941 TGAAGTGTATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAG
66 TGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
59158993 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
* *
59159058 TGTGAAAGTGTATATATGTGATTAGGCCTAATTGCCGATGTGATGAATGTGAAAG
64 TGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
59159113 TG
1 TG
59159115 TATATATGTG
Statistics
Matches: 113, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
117 25 0.22
119 39 0.35
120 49 0.43
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (117 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
TGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:59161249 original size:40 final size:40
Alignment explanation
Indices: 59161009--59161240 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
59160999 GAGAATTGAG
*
59161009 AGTGATGTCTCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
59161049 AGTGATGTGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
59161089 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
59161129 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
59161169 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
59161209 GGTGTTATATCTGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
59161241 ATCATGCTGA
Statistics
Matches: 171, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:59165320 original size:47 final size:47
Alignment explanation
Indices: 59165266--59166093 Score: 1381
Period size: 47 Copynumber: 17.6 Consensus size: 47
59165256 TATTTGAATA
59165266 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
59165313 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGCCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59165360 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
59165409 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59165456 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
59165503 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59165550 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59165597 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59165644 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
59165693 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59165740 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59165787 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59165834 AATGTGAAAGCGTATATATGTGATAAGG-CTAATGG-CGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
59165879 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59165926 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59165973 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * **
59166020 AATGTGAAAGCGTATATATGTGATAGGGCCGAGTGTCCAACCTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
59166067 GATGTGAAAGTGTAGAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
59166094 TGCCGAAGGG
Statistics
Matches: 748, Mismatches: 27, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
45 38 0.05
46 14 0.02
47 606 0.81
49 90 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:59165777 original size:284 final size:284
Alignment explanation
Indices: 59165266--59166100 Score: 1435
Period size: 284 Copynumber: 3.0 Consensus size: 284
59165256 TATTTGAATA
59165266 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
59165331 TGTGATAAGGCCGAATGCCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
59165396 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
59165461 GAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
196 GAAAGCGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
59165526 TAAGGCCGAATGGCCAATGTGATG
261 TAAGGCCGAATGGCCAATGTGATG
*
59165550 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
59165615 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
59165680 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
59165745 GAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGA
196 GAAAGCGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
59165810 TAAGGCCTAATGGCCGATGTGATG
261 TAAGGCCGAATGGCCAATGTGATG
* *
59165834 AATGTGAAAGCGTATATATGTGATAAGG-CTAATGG-CGATGTGATGAATGTGAAAGCGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
59165897 TGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGCG--TATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
59165960 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * ** * * *
59166025 GAAAGCGTATATATGTGATAGGGCCGAGTGTCCAACCTGATGGATGTGAAAGTGTAGAAATGTGA
196 GAAAGCGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
59166090 TAAGTGCCGAA
261 TAAG-GCCGAA
59166101 GGGCATTTGT
Statistics
Matches: 524, Mismatches: 26, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
280 145 0.28
281 5 0.01
282 65 0.12
283 6 0.01
284 303 0.58
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (284 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGCGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCGAATGGCCAATGTGATG
Found at i:59180731 original size:40 final size:40
Alignment explanation
Indices: 59180653--59180876 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
59180643 ACCCAAGTAT
* *
59180653 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * **
59180692 CTTTGGGTCTTATCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
59180732 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
59180772 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATAC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
59180815 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
59180855 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
59180877 CATCCGAATA
Statistics
Matches: 159, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 10 0.06
40 113 0.71
41 1 0.01
43 35 0.22
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:59180836 original size:83 final size:80
Alignment explanation
Indices: 59180653--59180876 Score: 274
Period size: 83 Copynumber: 2.8 Consensus size: 80
59180643 ACCCAAGTAT
* * * * *
59180653 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTTGGGTCTTATCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
** *
59180716 TCACTAGCATGAATGC
65 TCACTAGCACAAATAC
*
59180732 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
59180796 CAACTACTCGCACAAATAC
66 C-ACTA---GCACAAATAC
* * *
59180815 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
59180877 CATCCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
79 13 0.10
80 47 0.37
81 1 0.01
83 65 0.52
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATAC
Found at i:59185668 original size:30 final size:30
Alignment explanation
Indices: 59185632--59185692 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
59185622 CAAGTGTAAG
59185632 TATGGATCATTTTTAAGTAATAAAAATCCT
1 TATGGATCATTTTTAAGTAATAAAAATCCT
59185662 TATGGATCATTTTTAAGTAATAAAAATCCT
1 TATGGATCATTTTTAAGTAATAAAAATCCT
59185692 T
1 T
59185693 CTCCTAGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (30 bp):
TATGGATCATTTTTAAGTAATAAAAATCCT
Found at i:59188027 original size:34 final size:34
Alignment explanation
Indices: 59187979--59188068 Score: 89
Period size: 34 Copynumber: 2.7 Consensus size: 34
59187969 TATTGGCATA
*
59187979 AGCCCATATT-AGTAGCAATATCAATGTGGGCTTT
1 AGCCCA-ATTCAGTAGCAATATCAATGTGGGCCTT
* *
59188013 AGCCC-ATTACAGTAGCAGTAAT-AGTGTGGGCCTT
1 AGCCCAATT-CAGTAGCAAT-ATCAATGTGGGCCTT
*
59188047 AGCCCAATTCAGTA-CCATATCA
1 AGCCCAATTCAGTAGCAATATCA
59188069 GAAATGCATA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
32 5 0.11
33 3 0.07
34 33 0.72
35 5 0.11
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (34 bp):
AGCCCAATTCAGTAGCAATATCAATGTGGGCCTT
Found at i:59195760 original size:34 final size:34
Alignment explanation
Indices: 59195722--59195811 Score: 96
Period size: 34 Copynumber: 2.7 Consensus size: 34
59195712 TCTGGGCATA
59195722 AGCCCATATTAGTAGCAATATCAATGTGGGCCTT
1 AGCCCATATTAGTAGCAATATCAATGTGGGCCTT
* * * *
59195756 AGCCCATTACT-GTAGCAGTAACAGTGTGGGCCTT
1 AGCCCA-TATTAGTAGCAATATCAATGTGGGCCTT
*
59195790 AGCCCA-ATTCAGTA-CCATATCA
1 AGCCCATATT-AGTAGCAATATCA
59195812 GAAATGCATA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
32 2 0.04
33 5 0.11
34 35 0.78
35 3 0.07
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (34 bp):
AGCCCATATTAGTAGCAATATCAATGTGGGCCTT
Found at i:59203824 original size:40 final size:40
Alignment explanation
Indices: 59203532--59203817 Score: 486
Period size: 40 Copynumber: 7.2 Consensus size: 40
59203522 AACCCAAGTA
* *
59203532 CCTTCGGGATTTAG-CCGGATATAGCAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT-AGCACAAATG
*
59203571 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
59203611 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
59203651 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
59203691 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
59203731 CCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
59203771 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
59203811 CCTTCGG
1 CCTTCGG
59203818 ATCTTAGTCC
Statistics
Matches: 234, Mismatches: 11, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
39 14 0.06
40 220 0.94
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:59205213 original size:13 final size:13
Alignment explanation
Indices: 59205195--59205220 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59205185 ATTTTTATTT
59205195 TTAACATAAAATA
1 TTAACATAAAATA
59205208 TTAACATAAAATA
1 TTAACATAAAATA
59205221 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:59216543 original size:9 final size:9
Alignment explanation
Indices: 59216520--59216593 Score: 51
Period size: 9 Copynumber: 7.7 Consensus size: 9
59216510 TTATAAATAA
59216520 AATATATAAT
1 AATATA-AAT
59216530 AATATAAAT
1 AATATAAAT
59216539 CATATAATAAAT
1 -A-AT-ATAAAT
*
59216551 AATATAAAA
1 AATATAAAT
* *
59216560 AAAATATAT
1 AATATAAAT
59216569 AATA-AAAT
1 AATATAAAT
*
59216577 GTATATAATAT
1 -AATATAA-AT
59216588 AATATA
1 AATATA
59216594 TAAAAGAAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
8 3 0.06
9 20 0.40
10 16 0.32
11 5 0.10
12 6 0.12
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (9 bp):
AATATAAAT
Found at i:59216543 original size:17 final size:16
Alignment explanation
Indices: 59216515--59216805 Score: 71
Period size: 17 Copynumber: 19.2 Consensus size: 16
59216505 ATAATTTATA
59216515 AATA-AAATATATAAT
1 AATATAAATATATAAT
59216530 AATATAAATCATATAAT
1 AATATAAAT-ATATAAT
59216547 AA-AT--A-ATAT-A-
1 AATATAAATATATAAT
59216557 AA-A-AAA-ATAT-AT
1 AATATAAATATATAAT
*
59216569 AATA-AAATGTAT-AT
1 AATATAAATATATAAT
*
59216583 AATAT-AATATATAAA
1 AATATAAATATATAAT
* * * *
59216598 AGAAAGAAAGATATTAT
1 A-ATATAAATATATAAT
*
59216615 AATGA-ATAATATATAAC
1 AAT-ATA-AATATATAAT
* *
59216632 AAAATATAATATGTAAT
1 AATATA-AATATATAAT
* ** *
59216649 AAAATATGTAGATAA-
1 AATATAAATATATAAT
*
59216664 AATAT-AATGAAAT-AT
1 AATATAAAT-ATATAAT
*
59216679 AATAT-AATA-AGGAAT
1 AATATAAATATA-TAAT
59216694 -ATAT-AA-A-ATAAT
1 AATATAAATATATAAT
* *
59216706 AATATAAAAATATAGT
1 AATATAAATATATAAT
*
59216722 AAAATAAATA-ATATAT
1 AATATAAATATATA-AT
* *
59216738 AATAAAAATATATAAC
1 AATATAAATATATAAT
*
59216754 ATATAATAAAAATAT-A-
1 A-AT-ATAAATATATAAT
*
59216770 AATATAACAGA-ATAAAT
1 AATATAA-ATATAT-AAT
*
59216787 AATATATATATATAAT
1 AATATAAATATATAAT
59216803 AAT
1 AAT
59216806 TTTTTTTAAA
Statistics
Matches: 208, Mismatches: 37, Indels: 61
0.68 0.12 0.20
Matches are distributed among these distances:
10 3 0.01
11 7 0.03
12 9 0.04
13 11 0.05
14 33 0.16
15 31 0.15
16 49 0.24
17 57 0.27
18 8 0.04
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (16 bp):
AATATAAATATATAAT
Found at i:59216547 original size:14 final size:13
Alignment explanation
Indices: 59216523--59216801 Score: 68
Period size: 12 Copynumber: 22.0 Consensus size: 13
59216513 TAAATAAAAT
59216523 ATATAATAATATAA
1 ATAT-ATAATATAA
59216537 ATCATAT-A-ATAA
1 AT-ATATAATATAA
* *
59216549 ATAATATAAAAAAA
1 AT-ATATAATATAA
59216563 ATATATAATA-AA
1 ATATATAATATAA
59216575 ATGTATATAATAT-A
1 A--TATATAATATAA
* *
59216589 ATATATAAAAGAA
1 ATATATAATATAA
*
59216602 AGA-A-AGATATTATA
1 ATATATA-ATA-TA-A
59216616 ATGA-ATAATATATA
1 AT-ATATAATATA-A
*
59216630 ACA-A-AATAT-A
1 ATATATAATATAA
*
59216640 ATATGTAATA-AA
1 ATATATAATATAA
* *
59216652 ATATGT-AGATAA
1 ATATATAATATAA
59216664 A-ATATAATGA-AA
1 ATATATAAT-ATAA
*
59216676 TATAATATAATA-AGG
1 -AT-ATATAATATA-A
59216691 A-ATAT-ATA-AA
1 ATATATAATATAA
59216701 ATA-ATAATATAA
1 ATATATAATATAA
* *
59216713 AAATATAGTA-AA
1 ATATATAATATAA
*
59216725 ATAAATAATATATA
1 ATATATAATATA-A
*
59216739 ATA-AAAATATATA
1 ATATATAATATA-A
* *
59216752 ACATATAATAAAA
1 ATATATAATATAA
59216765 ATATA-AATATAA
1 ATATATAATATAA
*
59216777 CAGA-ATAA-AT-A
1 -ATATATAATATAA
59216788 ATATATATATATAA
1 ATATATA-ATATAA
59216802 TAATTTTTTT
Statistics
Matches: 200, Mismatches: 30, Indels: 70
0.67 0.10 0.23
Matches are distributed among these distances:
10 8 0.04
11 18 0.09
12 73 0.37
13 45 0.22
14 41 0.20
15 14 0.07
16 1 0.00
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (13 bp):
ATATATAATATAA
Found at i:59216707 original size:27 final size:25
Alignment explanation
Indices: 59216660--59216805 Score: 92
Period size: 23 Copynumber: 5.8 Consensus size: 25
59216650 AAATATGTAG
*
59216660 ATAAAATATAATGAAAT-ATAATATA
1 ATAAAATAT-ATAAAATAATAATATA
59216685 ATAAGGAATATATAAAATAATAATAT-
1 ATAA--AATATATAAAATAATAATATA
59216711 A-AAAATATAGTAAAATAAATAATATATA
1 ATAAAATATA-TAAAAT-AAT-A-ATATA
59216739 ATAAAAATATATAACATATAATAA-A-A
1 AT-AAAATATATAA-A-ATAATAATATA
* * *
59216765 ATATAA-ATATAACAGAATAA-ATA
1 ATAAAATATATAAAATAATAATATA
* *
59216788 AT-ATATATATATAATAAT
1 ATAAAATATATAAAATAAT
59216806 TTTTTTTAAA
Statistics
Matches: 98, Mismatches: 9, Indels: 30
0.72 0.07 0.22
Matches are distributed among these distances:
22 8 0.08
23 18 0.18
24 12 0.12
25 12 0.12
26 11 0.11
27 17 0.17
28 2 0.02
29 4 0.04
30 12 0.12
31 2 0.02
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (25 bp):
ATAAAATATATAAAATAATAATATA
Found at i:59216717 original size:40 final size:38
Alignment explanation
Indices: 59216518--59216775 Score: 115
Period size: 40 Copynumber: 6.6 Consensus size: 38
59216508 ATTTATAAAT
*
59216518 AAAATAT-ATAATAATATAAATCATAT-AATAAATAATATAA
1 AAAATATAAT-ATAATA-AAAT-ATATAAAT-AATAATATAC
* * *
59216558 AAAAAAT-ATATAATAAAATGTATATAAT-ATAATATAT
1 AAAATATAATATAATAAAATATATA-AATAATAATATAC
* * * * * *
59216595 AAAAGA-AAGA-AAGATATTATAATGAATAAT-ATATAAC
1 AAAATATAATATAATAAAATAT-ATAAATAATAATAT-AC
* *
59216632 AAAATATAATATGTAATAAAATATGTAGATAA-AATATA-
1 AAAATATAATA--TAATAAAATATATAAATAATAATATAC
59216670 ATGAAATATAATATAATAAGGAATATATAAAATAATAATATA-
1 A--AAATATAATATAATAA--AATATAT-AAATAATAATATAC
* * * *
59216712 AAAATATAGTAAAAT-AAATAATATATAATAAAAATATAT
1 AAAATATAATATAATAAAAT-ATATA-AATAATAATATAC
* *
59216751 AACATATAATAAAAATATAAATATA
1 AAAATATAAT-ATAATA-AAATATA
59216776 ACAGAATAAA
Statistics
Matches: 169, Mismatches: 26, Indels: 45
0.70 0.11 0.19
Matches are distributed among these distances:
36 13 0.08
37 32 0.19
38 29 0.17
39 19 0.11
40 50 0.30
41 15 0.09
42 11 0.07
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.31
Consensus pattern (38 bp):
AAAATATAATATAATAAAATATATAAATAATAATATAC
Found at i:59216719 original size:50 final size:49
Alignment explanation
Indices: 59216662--59216770 Score: 105
Period size: 50 Copynumber: 2.2 Consensus size: 49
59216652 ATATGTAGAT
* ** * *
59216662 AAAATATAATGAAAT-ATAATATAATAAGGAATATATAAAATAATA-ATATA
1 AAAATATAATAAAATAATAATAT-ATAATAAAAATATATAA-AATATA-ATA
* *
59216712 AAAATATAGTAAAATAAATAATATATAATAAAAATATATAACATATAATA
1 AAAATATAATAAAAT-AATAATATATAATAAAAATATATAAAATATAATA
59216762 AAAATATAA
1 AAAATATAA
59216771 ATATAACAGA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
50 27 0.56
51 14 0.29
52 7 0.15
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (49 bp):
AAAATATAATAAAATAATAATATATAATAAAAATATATAAAATATAATA
Found at i:59216736 original size:25 final size:23
Alignment explanation
Indices: 59216691--59216736 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 23
59216681 TATAATAAGG
59216691 AATATATAAAATAATAATATAAA
1 AATATATAAAATAATAATATAAA
59216714 AATATAGTAAAATAAATAATATA
1 AATATA-TAAAAT-AATAATATA
59216737 TAATAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (23 bp):
AATATATAAAATAATAATATAAA
Found at i:59216788 original size:56 final size:54
Alignment explanation
Indices: 59216680--59216794 Score: 142
Period size: 56 Copynumber: 2.1 Consensus size: 54
59216670 ATGAAATATA
* * **
59216680 ATATAATAAGGAATATATAAAATAATAATATAAAAATATAGTAAAATAAATAAT
1 ATATAATAAGAAATATATAAAATAATAAAATAAAAATATAACAAAATAAATAAT
* *
59216734 ATATAATAA-AAATATATAACATATAATAAAAATATAAATATAACAGAATAAATAAT
1 ATATAATAAGAAATATATAA-A-ATAAT-AAAATAAAAATATAACAAAATAAATAAT
59216790 ATATA
1 ATATA
59216795 TATATAATAA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 9 0.17
54 10 0.19
55 5 0.10
56 28 0.54
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (54 bp):
ATATAATAAGAAATATATAAAATAATAAAATAAAAATATAACAAAATAAATAAT
Found at i:59218538 original size:44 final size:44
Alignment explanation
Indices: 59218488--59218572 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
59218478 GCCATGTTGA
* * *
59218488 TATCTTCGATCTACTCTCTGACAATATAGAGATGCCAAATCTGC
1 TATCTTCAATCTACTCTATGACAATATAGAGACGCCAAATCTGC
*
59218532 TATCTTCAATCTGCTCTATGACAATATAGAGACGCCAAATC
1 TATCTTCAATCTACTCTATGACAATATAGAGACGCCAAATC
59218573 ATCTTATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.31
Consensus pattern (44 bp):
TATCTTCAATCTACTCTATGACAATATAGAGACGCCAAATCTGC
Found at i:59224952 original size:48 final size:48
Alignment explanation
Indices: 59224819--59225217 Score: 593
Period size: 48 Copynumber: 8.3 Consensus size: 48
59224809 TCCAAGATAA
*
59224819 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
59224867 ATATGTATATGTGTGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTG-GTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
59224916 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
59224964 ATATGTATATGTGGTAAAGCCGAATGG-TGAATGTAAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATGAG
* * **
59225012 ATATGTATATGTGGTAAAGCCGAATGGGTAATGTGAAATATATGTGTT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
** * *
59225060 ATATGTATATGTGGTAAAGCCGAATGGGGAATGTAAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
59225108 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * * *
59225156 ATATGTATATGTGGTGAAGCCAAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
59225204 ATATGTATATGTGG
1 ATATGTATATGTGG
59225218 ATATGTATAT
Statistics
Matches: 316, Mismatches: 32, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
47 1 0.00
48 267 0.84
49 48 0.15
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:59225031 original size:96 final size:96
Alignment explanation
Indices: 59224819--59225348 Score: 767
Period size: 96 Copynumber: 5.4 Consensus size: 96
59224809 TCCAAGATAA
* * *
59224819 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGTGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTG-GTA
*
59224884 AAGCCGAATGGCT-AATGTGAAATATGTATGAG
65 AAGCCGAATGG-TGAATGTAAAATATGTATGAG
59224916 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
59224981 AGCCGAATGGTGAATGTAAAATATGTATGAG
66 AGCCGAATGGTGAATGTAAAATATGTATGAG
* *
59225012 ATATGTATATGTGGTAAAGCCGAATGGGTAATGTGAAATATATGTGTTATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
*
59225077 AGCCGAATGGGGAATGTAAAATATGTATGAG
66 AGCCGAATGGTGAATGTAAAATATGTATGAG
*
59225108 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTGA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
* *
59225173 AGCCAAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGG
66 AGCCGAATGGTGAATGT-AAA-A--TAT--G-TATG---A----G
59225218 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
* *
59225283 AGCCGAATGGCT-AATGTGAAATATATATGAG
66 AGCCGAATGG-TGAATGTAAAATATGTATGAG
* *
59225314 ATATGTATATGTGGTAAGGCCGAATGGCCAATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
59225349 GTGAATATGA
Statistics
Matches: 398, Mismatches: 19, Indels: 33
0.88 0.04 0.07
Matches are distributed among these distances:
95 1 0.00
96 236 0.59
97 61 0.15
98 1 0.00
100 4 0.01
102 1 0.00
103 8 0.02
106 4 0.01
108 1 0.00
109 2 0.01
110 79 0.20
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
AGCCGAATGGTGAATGTAAAATATGTATGAG
Found at i:59225085 original size:144 final size:144
Alignment explanation
Indices: 59224819--59225340 Score: 706
Period size: 144 Copynumber: 3.5 Consensus size: 144
59224809 TCCAAGATAA
*
59224819 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGTGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTG-GTA
* * * **
59224884 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
65 AAGCCGAATGGGTAATGTGAAATATATGTGTTATATGTATATGTGGTAAAGCCGAATGGCTAATG
59224949 TGAAATATATGTGTG
130 TGAAATATATGTGTG
* *
59224964 ATATGTATATGTGGTAAAGCCGAATGG-TGAATGTAAAATATGTATGAGATATGTATATGTGGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATGAGATATGTATATGTGGTA
**
59225028 AAGCCGAATGGGTAATGTGAAATATATGTGTTATATGTATATGTGGTAAAGCCGAATGGGGAATG
65 AAGCCGAATGGGTAATGTGAAATATATGTGTTATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * * *
59225093 TAAAATATGTATGAG
130 TGAAATATATGTGTG
* * *
59225108 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTGA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
*
59225173 AGCCAAATGGCG-AATGTGAAATATGTATGAGATATGTATATGTGGATATGTATATGTGGTAAAG
66 AGCCGAATGG-GTAATGTGAAATA--TAT--G---TG----T-T--ATATGTATATGTGGTAAAG
59225237 CCGAATGGCTAATGTGAAATATATGTGTG
116 CCGAATGGCTAATGTGAAATATATGTGTG
59225266 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
*
59225331 GGCCGAATGG
66 AGCCGAATGG
59225341 CCAATGTGGT
Statistics
Matches: 329, Mismatches: 31, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
144 151 0.46
145 58 0.18
146 3 0.01
148 1 0.00
151 2 0.01
155 1 0.00
156 1 0.00
158 112 0.34
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
AGCCGAATGGGTAATGTGAAATATATGTGTTATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATATGTGTG
Found at i:59225222 original size:14 final size:14
Alignment explanation
Indices: 59225203--59225231 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
59225193 ATATGTATGA
59225203 GATATGTATATGTG
1 GATATGTATATGTG
59225217 GATATGTATATGTG
1 GATATGTATATGTG
59225231 G
1 G
59225232 TAAAGCCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (14 bp):
GATATGTATATGTG
Found at i:59225224 original size:62 final size:62
Alignment explanation
Indices: 59225146--59225279 Score: 205
Period size: 62 Copynumber: 2.1 Consensus size: 62
59225136 TAATGTGAAA
* *
59225146 TATATGTGTGATATGTATATGTGGTGAAGCCAAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTG-GATATGTATATGTGGTAAAGCCAAATGGCGAATGTGAAATATATATGAGATATG
* * * *
59225209 TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGATATGTATATGTGGTAAAGCCAAATGGCGAATGTGAAATATATATGAGATATG
59225271 TATATGTGG
1 TATATGTGG
59225280 TAAAGCCGAA
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
62 57 0.88
63 8 0.12
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.35
Consensus pattern (62 bp):
TATATGTGGATATGTATATGTGGTAAAGCCAAATGGCGAATGTGAAATATATATGAGATATG
Found at i:59225241 original size:158 final size:159
Alignment explanation
Indices: 59224915--59225348 Score: 553
Period size: 158 Copynumber: 2.8 Consensus size: 159
59224905 ATATGTATGA
* * * *
59224915 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTAAAATATATATGAGATATGTATATGTGGTA
* * * *
59224980 AAGCCGAATGG-TGAATGTAAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGG-----
66 AAGCCGAATGGCT-AATGTGAAATATATATGAGATATGTATATGTGGTAAGGCCAAATGGCCAAT
59225039 GT---A-ATG--TGA-A-A--TATATGTGT
130 GTGAAATATGTATGAGATATGTATATGTGT
* * *
59225059 TATATGTATATGTGGTAAAGCCGAATGGGGAATGTAAAATATGTATGAGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTAAAATATATATGAGATATGTATATGTGGTA
* * *
59225124 AAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTGAA-GCCAAATGGCGAAT
66 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT-AAGGCCAAATGGCCAAT
59225188 GTGAAATATGTATGAGATATGTATATGTG-
130 GTGAAATATGTATGAGATATGTATATGTGT
* * * *
59225217 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTAAAATATATATGAGATATGTATATGTGGTA
*
59225282 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAGGCCGAATGGCCAATG
66 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAGGCCAAATGGCCAATG
59225347 TG
131 TG
59225349 GTGAATATGA
Statistics
Matches: 249, Mismatches: 23, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
144 107 0.43
145 3 0.01
149 2 0.01
152 1 0.00
153 3 0.01
155 3 0.01
156 1 0.00
157 3 0.01
158 118 0.47
159 8 0.03
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (159 bp):
GATATGTATATGTGGTAAAGCCGAATGGCGAATGTAAAATATATATGAGATATGTATATGTGGTA
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAGGCCAAATGGCCAATG
TGAAATATGTATGAGATATGTATATGTGT
Found at i:59225279 original size:48 final size:47
Alignment explanation
Indices: 59225209--59225348 Score: 235
Period size: 48 Copynumber: 2.9 Consensus size: 47
59225199 ATGAGATATG
59225209 TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
59225256 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTG-GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* * *
59225304 TATATATGAGATATGTATATGTGGTAAGGCCGAATGGCCAATGTG
1 TATATGTG-GATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
59225349 GTGAATATGA
Statistics
Matches: 88, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
47 8 0.09
48 80 0.91
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (47 bp):
TATATGTGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:59225373 original size:110 final size:107
Alignment explanation
Indices: 59225121--59225327 Score: 306
Period size: 110 Copynumber: 1.9 Consensus size: 107
59225111 TGTATATGTG
* *
59225121 GTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTGAAGCCAAATGGCGA
1 GTAAAGCCGAATGGCTAATATGAAATATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCGA
* * **
59225186 ATGTGAAATATGTATGAGATATGTATATGTGGATATGTATATGTG
66 ATGTGAAATATATATGAGATATGTATATGTGG--A-GTATAGGCC
* * *
59225231 GTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA
1 GTAAAGCCGAATGGCTAATATGAAATATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCGA
59225296 ATGTGAAATATATATGAGATATGTATATGTGG
66 ATGTGAAATATATATGAGATATGTATATGTGG
59225328 TAAGGCCGAA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
110 93 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (107 bp):
GTAAAGCCGAATGGCTAATATGAAATATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCGA
ATGTGAAATATATATGAGATATGTATATGTGGAGTATAGGCC
Found at i:59225382 original size:47 final size:47
Alignment explanation
Indices: 59225319--59225576 Score: 372
Period size: 47 Copynumber: 5.5 Consensus size: 47
59225309 ATGAGATATG
* * *
59225319 TATATGTGGTAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
*
59225366 TATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * *
59225413 TATATGTGATTAGGCCGAATGGCCAATGTGATAAATGTGAGCATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
*
59225460 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * * * *
59225507 TATGTGTGATAAGGCCGAATGACCAATGTGCTGAATATGAAAATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * *
59225554 TATATGCGGTAAAGCCGAATGGC
1 TATATGTGATAAGGCCGAATGGC
59225577 TAGTGTGAAA
Statistics
Matches: 190, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 190 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
Found at i:59225573 original size:141 final size:141
Alignment explanation
Indices: 59225271--59225585 Score: 409
Period size: 141 Copynumber: 2.2 Consensus size: 141
59225261 GTGTGATATG
* * * *
59225271 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAGGCCG
1 TATATGTGGTAAAGCCGAATGGCCAATGTG-AATAAATATGAGACATGTATATGTGATAAGGCCG
* * *
59225336 AATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCTATGTGATGAA
65 AATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGACCAATGTGATGAA
* *
59225401 TGTGAACATGCA
130 TATGAAAATGCA
* * * *
59225413 TATATGTGATTAGGCCGAATGGCCAATGTG-ATAAATGTGAG-CATGCATATATGTGATAAGGCC
1 TATATGTGGTAAAGCCGAATGGCCAATGTGAATAAATATGAGACATG--TATATGTGATAAGGCC
* * * *
59225476 GAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGACCAATGTGCTGA
64 GAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGACCAATGTGATGA
59225541 ATATGAAAATGCA
129 ATATGAAAATGCA
* * *
59225554 TATATGCGGTAAAGCCGAATGGCTAGTGTGAA
1 TATATGTGGTAAAGCCGAATGGCCAATGTGAA
59225586 ATATGTAGGC
Statistics
Matches: 147, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
139 3 0.02
140 9 0.06
141 108 0.73
142 27 0.18
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (141 bp):
TATATGTGGTAAAGCCGAATGGCCAATGTGAATAAATATGAGACATGTATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGACCAATGTGATGAAT
ATGAAAATGCA
Found at i:59225789 original size:37 final size:37
Alignment explanation
Indices: 59225739--59225853 Score: 185
Period size: 37 Copynumber: 3.1 Consensus size: 37
59225729 GGAAATATAT
*
59225739 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
59225776 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
59225813 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
59225850 TCCG
1 TCCG
59225854 AGCTAAAGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:59240040 original size:12 final size:12
Alignment explanation
Indices: 59240021--59240302 Score: 65
Period size: 12 Copynumber: 22.2 Consensus size: 12
59240011 TAACATAATT
59240021 TATA-AATAAAA
1 TATATAATAAAA
59240032 TATATAATAATATAA
1 TATATAAT-A-A-AA
59240047 CTCATATAAT-AAA
1 -T-ATATAATAAAA
*
59240060 TAATATAAAAATATA
1 T-ATATAATAA-A-A
59240075 TATATAATAAAA
1 TATATAATAAAA
*
59240087 TGTATATAATATAA
1 --TATATAATAAAA
*
59240101 TATATAA-AAGA
1 TATATAATAAAA
* *
59240112 -A-A-GA-AAGA
1 TATATAATAAAA
59240120 TATTATAATGAATAA
1 TA-TATAAT-AA-AA
*
59240135 TATATAACAAAATA
1 TATATAA-TAAA-A
59240149 TAATATGTAATAAAA
1 T-ATA--TAATAAAA
*
59240164 TATGTAGAT-AAA
1 TATATA-ATAAAA
59240176 -ATATAATGAAATA
1 TATATAAT-AAA-A
*
59240189 TAATATAATAAGGA
1 T-ATATAATAA-AA
59240203 -ATAT-ATAAAA
1 TATATAATAAAA
59240213 TA-ATAATAATAA
1 TATATAATAA-AA
*
59240225 TATA-AA-AATA
1 TATATAATAAAA
*
59240235 TAGTAAAATAAATAA
1 TA-TATAAT-AA-AA
59240250 TATATAATATAAA
1 TATATAATA-AAA
59240263 TATA-AATATAACA
1 TATATAATA-AA-A
* *
59240276 GA-ATAAATAATA
1 TATAT-AATAAAA
59240288 TATATAATAAAA
1 TATATAATAAAA
59240300 TAT
1 TAT
59240303 TTTTAAAAAA
Statistics
Matches: 205, Mismatches: 22, Indels: 87
0.65 0.07 0.28
Matches are distributed among these distances:
8 5 0.02
9 2 0.01
10 9 0.04
11 24 0.12
12 57 0.28
13 22 0.11
14 50 0.24
15 22 0.11
16 4 0.02
17 10 0.05
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (12 bp):
TATATAATAAAA
Found at i:59240218 original size:27 final size:28
Alignment explanation
Indices: 59240021--59240289 Score: 87
Period size: 29 Copynumber: 9.3 Consensus size: 28
59240011 TAACATAATT
* *
59240021 TATAA-ATAAAATATATAATAATATAACTCA
1 TATAATATAAAA-ATAT-ATAAAATAA-TAA
*
59240051 TATAATA-AATAATATA-AAAAT-ATATA
1 TATAATATAAAAATATATAAAATAATA-A
** *
59240077 TATAATA-AAATGTATATAATATAAT-A
1 TATAATATAAAAATATATAAAATAATAA
* * * *
59240103 TATAAAAGAAAGAAAGATATTATAATGAATAA
1 TATAATA-TAA-AAATATA-TAAAAT-AATAA
*
59240135 TAT-ATA-ACAAAATATAATATGTAATAA-AA
1 TATAATATA-AAAATAT-ATA--AAATAATAA
* * *
59240164 TAT-GTAGATAAAATATAATGAAAT-ATAA
1 TATAATATA-AAAATAT-ATAAAATAATAA
**
59240192 TATAATA-AGGAATATATAAAATAATAA
1 TATAATATAAAAATATATAAAATAATAA
59240219 TAATAATATAAAAATATAGTAAAATAAATAATA
1 T-ATAATATAAAAATATA-TAAAAT-AAT-A-A
* * *
59240252 TATAATATAAATATAAATATAACAGAATAA
1 TATAATATAAA-A-ATATATAAAATAATAA
59240282 -ATAATATA
1 TATAATATA
59240290 TATAATAAAA
Statistics
Matches: 185, Mismatches: 28, Indels: 53
0.70 0.11 0.20
Matches are distributed among these distances:
25 1 0.01
26 28 0.15
27 19 0.10
28 20 0.11
29 40 0.22
30 34 0.18
31 14 0.08
32 18 0.10
33 7 0.04
34 4 0.02
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (28 bp):
TATAATATAAAAATATATAAAATAATAA
Found at i:59240245 original size:46 final size:46
Alignment explanation
Indices: 59240171--59240273 Score: 113
Period size: 46 Copynumber: 2.2 Consensus size: 46
59240161 AAATATGTAG
* *
59240171 ATAAAATATAATGAAATATAATATAATAAGGAATATATAAAATAATA
1 ATAAAATATAA-GAAATATAATAAAATAAAGAATATATAAAATAATA
* * *
59240218 ATAATAATATAA-AAATATAGTAAAATAAATAATATATAATAT-A-A
1 ATAA-AATATAAGAAATATAATAAAATAAAGAATATATAAAATAATA
59240262 ATATAAATATAA
1 ATA-AAATATAA
59240274 CAGAATAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
44 11 0.22
45 2 0.04
46 25 0.51
47 4 0.08
48 7 0.14
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (46 bp):
ATAAAATATAAGAAATATAATAAAATAAAGAATATATAAAATAATA
Found at i:59240264 original size:30 final size:28
Alignment explanation
Indices: 59240171--59240294 Score: 92
Period size: 32 Copynumber: 4.1 Consensus size: 28
59240161 AAATATGTAG
*
59240171 ATAAAATATAATGAAAT-ATAAT-ATAAT
1 ATAAAATAT-ATAAAATAATAATAATAAT
*
59240198 A-AGGAATATATAAAATAATAATAATAAT
1 ATA-AAATATATAAAATAATAATAATAAT
59240226 ATAAAAATATAGTAAAATAAATAATATATAAT
1 AT-AAAATATA-TAAAAT-AATAATA-ATAAT
* *
59240258 ATAAATATAAATATAACAGAATAAATAATATAT
1 ATAAA-AT--ATATAAAATAAT-AATAATA-AT
59240291 ATAA
1 ATAA
59240295 TAAAATATTT
Statistics
Matches: 79, Mismatches: 5, Indels: 20
0.76 0.05 0.19
Matches are distributed among these distances:
26 7 0.09
27 11 0.14
28 6 0.08
29 6 0.08
30 7 0.09
31 10 0.13
32 15 0.19
33 14 0.18
34 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.31
Consensus pattern (28 bp):
ATAAAATATATAAAATAATAATAATAAT
Found at i:59240281 original size:36 final size:35
Alignment explanation
Indices: 59240210--59240301 Score: 105
Period size: 36 Copynumber: 2.6 Consensus size: 35
59240200 GGAATATATA
* **
59240210 AAATAATA-ATAATAATATAAAAATATAGTAAAAT
1 AAATAATATATAATAAAATAAAAATATAACAAAAT
* *
59240244 AAATAATATATAATATAAATATAAATATAACAGAAT
1 AAATAATATATAATA-AAATAAAAATATAACAAAAT
59240280 AAATAATATATATAATAAAATA
1 AAAT-A-ATATATAATAAAATA
59240302 TTTTTAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
34 8 0.16
35 6 0.12
36 19 0.39
37 6 0.12
38 10 0.20
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.30
Consensus pattern (35 bp):
AAATAATATATAATAAAATAAAAATATAACAAAAT
Found at i:59247812 original size:22 final size:22
Alignment explanation
Indices: 59247787--59247870 Score: 64
Period size: 22 Copynumber: 3.8 Consensus size: 22
59247777 ATTAGTGCAA
59247787 TTTATCTGCAAATCAGTGATAG
1 TTTATCTGCAAATCAGTGATAG
* * * *
59247809 TTTATCCGTAATTTAGT-AGTAG
1 TTTATCTGCAAATCAGTGA-TAG
* * **
59247831 -TTATTCTGCAAATAAATGGCAG
1 TTTA-TCTGCAAATCAGTGATAG
59247853 TTTATCTGCAAATCAGTG
1 TTTATCTGCAAATCAGTG
59247871 GTGGCATGTC
Statistics
Matches: 45, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
21 4 0.09
22 38 0.84
23 3 0.07
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (22 bp):
TTTATCTGCAAATCAGTGATAG
Found at i:59248064 original size:12 final size:11
Alignment explanation
Indices: 59248026--59248067 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
59248016 ATTCCATAAT
59248026 TTTGATGTATG
1 TTTGATGTATG
*
59248037 ATT-ATGTCATG
1 TTTGATGT-ATG
59248048 TTTGATGTATG
1 TTTGATGTATG
59248059 TGTTGATGT
1 T-TTGATGT
59248068 GTATGCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 4 0.15
11 11 0.42
12 11 0.42
ACGTcount: A:0.19, C:0.02, G:0.26, T:0.52
Consensus pattern (11 bp):
TTTGATGTATG
Found at i:59248252 original size:29 final size:29
Alignment explanation
Indices: 59248219--59248277 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
59248209 TTTTATGGCT
59248219 ATGGACTATTT-TATTATTTTGGGACTTTC
1 ATGGACT-TTTATATTATTTTGGGACTTTC
*
59248248 ATGGACTTTTAAATTTTATTTTGGGACTTT
1 ATGGACTTTT--ATATTATTTTGGGACTTT
59248278 AATTTTTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 3 0.12
29 7 0.27
31 16 0.62
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.53
Consensus pattern (29 bp):
ATGGACTTTTATATTATTTTGGGACTTTC
Found at i:59250316 original size:40 final size:40
Alignment explanation
Indices: 59250162--59250343 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 40
59250152 TATTTGGATG
* * * *
59250162 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
59250202 A-ATTCCAGGCTAAGTCCCGAAGGCAATTGT-CTGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACT
*
59250242 ATAACCGGGCTAAGTCCCGAAGGAAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
59250282 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
59250322 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
59250344 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
39 18 0.15
40 102 0.84
41 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:59258165 original size:40 final size:40
Alignment explanation
Indices: 59258106--59258283 Score: 235
Period size: 39 Copynumber: 4.6 Consensus size: 40
59258096 TATTCGGATG
* *
59258106 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
59258146 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
59258186 ATAA-CGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
59258224 ATAACCGGGCTAAGT-CCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
59258263 ATATCC-GGCTAA-TCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
59258284 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 7, Indels: 14
0.86 0.05 0.10
Matches are distributed among these distances:
37 1 0.01
38 42 0.34
39 46 0.37
40 35 0.28
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:59260389 original size:22 final size:21
Alignment explanation
Indices: 59260363--59260424 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
59260353 AAGAGAAGCG
*
59260363 GAAAAGGAAAGAAAAAAAATA
1 GAAAAAGAAAGAAAAAAAATA
*
59260384 GAAAAAGAAAGGAAAAAAAT-
1 GAAAAAGAAAGAAAAAAAATA
* *
59260404 -AATATGAAAG-AAAAAAATA
1 GAAAAAGAAAGAAAAAAAATA
59260423 GA
1 GA
59260425 TTAAAAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 8 0.23
19 8 0.23
20 1 0.03
21 18 0.51
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (21 bp):
GAAAAAGAAAGAAAAAAAATA
Found at i:59276221 original size:40 final size:39
Alignment explanation
Indices: 59276137--59276358 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 39
59276127 TTGAATGACG
* * * *
59276137 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
59276177 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
59276217 TCCGGGCTAAGCCCGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
59276256 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
59276296 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC-ATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
59276336 -CC-GGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
59276359 AACGCGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
37 13 0.08
38 6 0.04
39 38 0.23
40 98 0.60
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:59276273 original size:79 final size:79
Alignment explanation
Indices: 59276137--59276358 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 79
59276127 TTGAATGACG
* * * *
59276137 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGATTTGTGC-GAGTTACCAAATCCGGACTAAGATCCGAAGGCATTT
*
59276202 GTGCGAGTTACTAAT
65 GTGCGAGTTACTAAA
* **
59276217 TCCGGGCTAAG-CCCGAAGGTATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGG-ATTTGTGCGAGTTACCAAATCCGGACTAAGAT-CCGAAGGCATT
59276280 TGTGCGAGTTACTAAA
64 TGTGCGAGTTACTAAA
* *
59276296 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CATAA-CCGG-CTATG-TCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGG-ATTTGTGCGAGTTACCA-AATCCGGACTAAGATCCGAAGGCATT
59276357 TG
64 TG
59276359 AACGCGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
77 13 0.10
78 5 0.04
79 65 0.52
80 42 0.34
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGATTTGTGCGAGTTACCAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:59283867 original size:39 final size:40
Alignment explanation
Indices: 59283767--59283991 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
59283757 TTGAATGATG
* * * *
59283767 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
59283807 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
59283847 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
59283886 TCCGGGTTAAGTCTTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
59283926 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
59283967 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
59283992 AACAAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 35 0.21
40 118 0.72
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:59289126 original size:46 final size:46
Alignment explanation
Indices: 59289076--59289248 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
59289066 TGTTTGGGCA
59289076 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
59289122 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
59289169 TCC-AAGCTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAATG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
59289215 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
59289249 CGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 64 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:59289231 original size:93 final size:93
Alignment explanation
Indices: 59289072--59289243 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
59289062 AGGATGTTTG
* * *
59289072 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
59289137 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
59289165 GGCATCC-AAGCTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAATGCCCGAGCTCGTTGA
1 GGCATCCGAA-CTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGA
59289229 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
59289244 ACTTACGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:59292221 original size:15 final size:15
Alignment explanation
Indices: 59292201--59292256 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
59292191 GTATCTTGGG
59292201 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
59292216 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
59292231 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
59292246 TTTCTTTATTC
1 TTTCTTTATTC
59292257 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:59294709 original size:46 final size:45
Alignment explanation
Indices: 59294659--59294834 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
59294649 TGTTTGGGCA
59294659 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
59294705 TCCGAACTCGTTAAGTTGAGACCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
59294752 TCC-AAGCTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAACG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
59294798 CCCGAGCTCCTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59294835 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 64 0.63
47 28 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:59294815 original size:93 final size:93
Alignment explanation
Indices: 59294655--59294826 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
59294645 AGGATGTTTG
* * * * *
59294655 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAG
1 GGCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAACGCCCGAACTCCTTAAG
59294720 TTGAGACCGAGTTCGAGAGATGTAACTA
66 TTGAGACCGAGTTCGAGAGATGTAACTA
* *
59294748 GGCATCC-AAGCTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAACGCCCGAGCTCCTTGA
1 GGCATCCGAA-CTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAACGCCCGAACTCCTTAA
*
59294812 GTTGAGTCCGAGTTC
65 GTTGAGACCGAGTTC
59294827 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATGCAAACGCCCGAACTCCTTAAG
TTGAGACCGAGTTCGAGAGATGTAACTA
Found at i:59296247 original size:21 final size:22
Alignment explanation
Indices: 59296221--59296262 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
59296211 GAGTAAAAGA
59296221 TAAAAGTTGCCTA-CT-ATTTGT
1 TAAAAG-TGCCTATCTGATTTGT
59296242 TAAAAGTGCCTATCTGATTTG
1 TAAAAGTGCCTATCTGATTTG
59296263 GCTTATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 8 0.42
22 5 0.26
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (22 bp):
TAAAAGTGCCTATCTGATTTGT
Found at i:59297406 original size:42 final size:41
Alignment explanation
Indices: 59297270--59297420 Score: 135
Period size: 42 Copynumber: 3.6 Consensus size: 41
59297260 ATGTGATTTT
** *
59297270 GTGTAAGACCATGTCTGGGACGCTAACATCG-ACTTCTGTTTTAC
1 GTGTAAGACCATGTCTGGGACG-TGGCATCGTA-TT-TG-ATTAC
* * *
59297314 GTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGATTTC
1 GTGTAAGACCATGTCTGGGAC-GTGGCATCGTATTTGATTAC
* *
59297356 GTGGAAGACTC-TGTCTGGGACGTGGCATCGATGTTTGATTAC
1 GTGTAAGAC-CATGTCTGGGACGTGGCATCG-TATTTGATTAC
* *
59297398 ATGTAAGACCACGTCTGGGACGT
1 GTGTAAGACCATGTCTGGGACGT
59297421 CGACATTGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
41 9 0.10
42 47 0.53
43 3 0.03
44 28 0.32
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (41 bp):
GTGTAAGACCATGTCTGGGACGTGGCATCGTATTTGATTAC
Found at i:59305338 original size:6 final size:6
Alignment explanation
Indices: 59305327--59305376 Score: 64
Period size: 6 Copynumber: 8.2 Consensus size: 6
59305317 ACTTCAAAAT
* * *
59305327 TTTTAA TTTTAA TTTTAA TTTTAA TGTTAA TTTTAT TTTTTA TGTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA T-TTTAA
59305376 T
1 T
59305377 AAAGGGGTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
6 32 0.86
7 5 0.14
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (6 bp):
TTTTAA
Done.