Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 185 of 316
Found at i:59595565 original size:42 final size:40
Alignment explanation
Indices: 59595468--59595588 Score: 100
Period size: 42 Copynumber: 2.9 Consensus size: 40
59595458 CTGTCCGTTT
* * * *
59595468 AGCTCTCACGAGCTTCTGTTTAACTCATATGAGTTTCTATTC
1 AGCTCT-ACGAGCTTCTGTTAAAC-CCTATGGGTTTCCATTC
*
59595510 AGCTCTATTGAGCTTCTGTTAAACCCTCATGGGTTTCCATTC
1 AGCTCTA-CGAGCTTCTGTTAAACCCT-ATGGGTTTCCATTC
* * *
59595552 AGTTCTTACGAGCTT-TCATTCAACCCTTATGGGTTTC
1 AGCTC-TACGAGCTTCT-GTTAAACCC-TATGGGTTTC
59595589 TTTAAGCACT
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
41 4 0.06
42 58 0.89
43 3 0.05
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.40
Consensus pattern (40 bp):
AGCTCTACGAGCTTCTGTTAAACCCTATGGGTTTCCATTC
Found at i:59598946 original size:26 final size:27
Alignment explanation
Indices: 59598898--59598959 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 27
59598888 ATATATAATA
*
59598898 ATAATAATATAAAAAGTAGATAA-AAT
1 ATAATAATATAAAAAGTAAATAAGAAT
*
59598924 ATAATGATATAAAAA-TAAAATAAGAAT
1 ATAATAATATAAAAAGT-AAATAAGAAT
59598951 A-AAGTAATA
1 ATAA-TAATA
59598960 GGTAATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 1 0.03
26 21 0.70
27 8 0.27
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (27 bp):
ATAATAATATAAAAAGTAAATAAGAAT
Found at i:59598953 original size:32 final size:35
Alignment explanation
Indices: 59598862--59598971 Score: 86
Period size: 34 Copynumber: 3.1 Consensus size: 35
59598852 AGTGTAAAAG
*
59598862 AAAAATATGACAAGTAAGACTAAAATATATATAATAAT
1 AAAAATAT-A-AA-TAAGAATAAAATATATATAATAAT
* *
59598900 AATAATATAAA-AAGTAGATAAAATATA-ATGAT-AT
1 AAAAATATAAATAAG-A-ATAAAATATATATAATAAT
*
59598934 AAAAATA-AAATAAGAATAAAGTA-ATAGGTAATAAT
1 AAAAATATAAATAAGAATAAAATATATA--TAATAAT
59598969 AAA
1 AAA
59598972 TACAATAACA
Statistics
Matches: 59, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
31 1 0.02
32 8 0.14
33 4 0.07
34 17 0.29
35 10 0.17
36 11 0.19
37 1 0.02
38 7 0.12
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (35 bp):
AAAAATATAAATAAGAATAAAATATATATAATAAT
Found at i:59600154 original size:13 final size:13
Alignment explanation
Indices: 59600138--59600163 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59600128 TTTATTTGGT
59600138 TTATTGGGTTTTG
1 TTATTGGGTTTTG
59600151 TTATTGGGTTTTG
1 TTATTGGGTTTTG
59600164 GGGTGGCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TTATTGGGTTTTG
Found at i:59612223 original size:41 final size:41
Alignment explanation
Indices: 59612178--59612273 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
59612168 ATCAAGAGGT
59612178 CTGCTCACACAAGCCGACAGTCATGACGAAGCCACATGGTG
1 CTGCTCACACAAGCCGACAGTCATGACGAAGCCACATGGTG
** ** *
59612219 CTGCTCACACAAGTTGATGGTCATGACGAAGCTACATGGTG
1 CTGCTCACACAAGCCGACAGTCATGACGAAGCCACATGGTG
*
59612260 CTACTCACACAAGC
1 CTGCTCACACAAGC
59612274 TAACAAGTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (41 bp):
CTGCTCACACAAGCCGACAGTCATGACGAAGCCACATGGTG
Found at i:59615697 original size:34 final size:35
Alignment explanation
Indices: 59615587--59615703 Score: 164
Period size: 35 Copynumber: 3.3 Consensus size: 35
59615577 TAATCCAATT
59615587 GAAACACACCAGATGCTCATAAGAGCTAATCCATCC
1 GAAACACACCA-ATGCTCATAAGAGCTAATCCATCC
* * *
59615623 GGAACACATCAATGCTCATAAGAGCTAATCCATCT
1 GAAACACACCAATGCTCATAAGAGCTAATCCATCC
* *
59615658 GAAACACACCAATACACATAAGAGCT-ATCCATCC
1 GAAACACACCAATGCTCATAAGAGCTAATCCATCC
*
59615692 AAAACACACCAA
1 GAAACACACCAA
59615704 AATAGAGAGT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
34 18 0.25
35 45 0.62
36 9 0.12
ACGTcount: A:0.43, C:0.30, G:0.11, T:0.16
Consensus pattern (35 bp):
GAAACACACCAATGCTCATAAGAGCTAATCCATCC
Found at i:59616949 original size:76 final size:75
Alignment explanation
Indices: 59616837--59617004 Score: 191
Period size: 76 Copynumber: 2.2 Consensus size: 75
59616827 TAAATATGGA
* * * *
59616837 AAAACACATAATGCAAGTCTTAAATGATGCTAATGTATTAATTCAAAGCA-TTAACTAAAGATAC
1 AAAATACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATGCAAAACATTTAA-TAAAGATAC
*
59616901 ATTCAATAAAC
65 ATTCAACAAAC
* *
59616912 AAGAA-ACATAATGCACATTTTTAAAAGATG-TAGATGTATTAATGCAAAACATTTAATAAAGAT
1 AA-AATACATAATGCA-AGTCTTAAAAGATGCTA-ATGTATTAATGCAAAACATTTAATAAAGAT
* *
59616975 GCATTTAACAAAC
63 ACATTCAACAAAC
59616988 AAAATACATAATG-AAGT
1 AAAATACATAATGCAAGT
59617005 AGATCACTAA
Statistics
Matches: 79, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
74 2 0.03
75 17 0.22
76 56 0.71
77 4 0.05
ACGTcount: A:0.49, C:0.12, G:0.11, T:0.28
Consensus pattern (75 bp):
AAAATACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATGCAAAACATTTAATAAAGATACA
TTCAACAAAC
Found at i:59622985 original size:50 final size:49
Alignment explanation
Indices: 59622866--59623050 Score: 178
Period size: 50 Copynumber: 3.7 Consensus size: 49
59622856 AGGTCGCATA
* * * * *
59622866 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACGTG
1 TGTAGTACTAAGTTCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACGTG
* **
59622917 TGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACGTG
1 TGTAGTACTAAGTTCAGGCTACTACGTGTACCAGACT-GT-AGGTCACGTG
* * *
59622967 TGTAGTACTAAGTTCAGGCTACTACGTGTACCAGACTGTTGGTCTCATG
1 TGTAGTACTAAGTTCAGGCTACTACGTGTACCAGACTGTAGGTCACGTG
* *
59623016 TGTAGTACTAAGTGT-AGGCTACTATGCGTACCAGA
1 TGTAGTACTAAGT-TCAGGCTACTACGTGTACCAGA
59623051 TAGCTTCGGC
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 38 0.33
50 43 0.37
51 29 0.25
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTAGTACTAAGTTCAGGCTACTACGTGTACCAGACTGTAGGTCACGTG
Found at i:59627047 original size:21 final size:21
Alignment explanation
Indices: 59627023--59627089 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
59627013 TGATCTCGAG
59627023 GTGGAGGTGAACGGCCTCGTT
1 GTGGAGGTGAACGGCCTCGTT
** * *
59627044 GTGGTTGTAAATAGG-CTCGTT
1 GTGGAGGTGAA-CGGCCTCGTT
*
59627065 GTGGAGGTGAACGACCTCGTT
1 GTGGAGGTGAACGGCCTCGTT
59627086 GTGG
1 GTGG
59627090 TCTCCCCTCT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
20 1 0.03
21 32 0.91
22 2 0.06
ACGTcount: A:0.16, C:0.15, G:0.40, T:0.28
Consensus pattern (21 bp):
GTGGAGGTGAACGGCCTCGTT
Found at i:59628312 original size:76 final size:74
Alignment explanation
Indices: 59628205--59628370 Score: 208
Period size: 76 Copynumber: 2.2 Consensus size: 74
59628195 ATTAAATATG
* * *
59628205 AAAAAAACACATAATGCAAATCTTAAAAGATGCTA-ATGTATTAATGCAAAGCATTAACTAAAGA
1 AAAAAAAAACATAATGCAAATCTTAAAAGATG-TAGATGTATTAATGCAAAACATTAAATAAAGA
*
59628269 CACATTCAAT
65 CACATTCAAC
* * *
59628279 AAACAAGAAACATAATGCACATTTTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAG
1 AAA-AAAAAACATAATGCA-AATCTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAG
** *
59628344 ATGCATTTAAC
64 ACACATTCAAC
59628355 AAAAAAAAACATAATG
1 AAAAAAAAACATAATG
59628371 AAGTAGATCA
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
74 3 0.04
75 27 0.35
76 48 0.62
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (74 bp):
AAAAAAAAACATAATGCAAATCTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGAC
ACATTCAAC
Found at i:59633033 original size:53 final size:54
Alignment explanation
Indices: 59632949--59633152 Score: 205
Period size: 53 Copynumber: 3.8 Consensus size: 54
59632939 TTCCTTTTTT
* * * *
59632949 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
59633002 AACTCACCAATGCCATGCCTTGGCATTGTCTTACATGGGA-CCTTTGCCTTATCG
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG
* * * * * *
59633056 TAACTCATCAATGTCATGTCTTGACATGGCCTTACATGATTTCCTTGCCTTATAG
1 -AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
59633111 AACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATC
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
59633153 ATTATCTTAC
Statistics
Matches: 125, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 42 0.34
54 38 0.30
55 41 0.33
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:59633138 original size:54 final size:53
Alignment explanation
Indices: 59632962--59633152 Score: 213
Period size: 55 Copynumber: 3.5 Consensus size: 53
59632952 TTACCATTGC
* * * * *
59632962 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCATCAATGT
* * **
59633015 CATGCCTTGGCATTGTCTTACATGGGA-CCTTTGCCTTATCGTAACTCATCAATGT
1 CATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTAT-G-AACTCATCAATGT
* * * *
59633070 CATGTCTTGACATGGCCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGT
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCATCAATGT
*
59633124 CATGCCTTGGCATGGTCTTACATGATATC
1 CATGCCTTGACATGGTCTTACATGATATC
59633153 ATTATCTTAC
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 31 0.27
54 38 0.33
55 41 0.36
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCATCAATGT
Found at i:59634013 original size:30 final size:31
Alignment explanation
Indices: 59633970--59634027 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
59633960 CTAACTCAAA
59633970 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
1 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
* ** *
59634001 CTTT-GCAGAATTATGATTTTTCCCCTA
1 CTTTGGCAAAATTACAATTTTGCCCCTA
59634028 GGCTCGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (31 bp):
CTTTGGCAAAATTACAATTTTGCCCCTAAAC
Found at i:59638687 original size:66 final size:64
Alignment explanation
Indices: 59638554--59638804 Score: 192
Period size: 67 Copynumber: 3.8 Consensus size: 64
59638544 ATACAGATGG
** * * * * * *
59638554 TATGTAGCTAGGTCACATGTATGGTGCGGAGCGCACATCATGT-GTACAAGAGAGCTATGAGACA
1 TATGTAGCTAGGTCACATGGGTGGTAC-TAGTGTACACCATGTAG-ACAAGAGAGCTACGAGA-A
59638618 TA
63 TA
* *
59638620 TGATGTAGCTAGGTCACATGGGTGATACTA-TGCTACACCATGTAGACAAGAGAGCTACG-GGAT
1 T-ATGTAGCTAGGTCACATGGGTGGTACTAGTG-TACACCATGTAGACAAGAGAGCTACGAGAAT
59638683 A
64 A
* * * * *
59638684 TATGTAGCTAGGTTACATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAG-
1 TATGTAGCTAGGTCACATGGGTGGTACTA-GT---GTACACCATGTAGACAAGAGAGCTACGAGA
59638748 ATA
62 ATA
* *
59638751 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACT-AGTGTACACCATGTAG-ACAAGAGAGC
59638805 CAAAATTATG
Statistics
Matches: 150, Mismatches: 23, Indels: 27
0.75 0.12 0.14
Matches are distributed among these distances:
62 1 0.01
63 42 0.28
64 4 0.03
65 3 0.02
66 43 0.29
67 53 0.35
68 4 0.03
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTAGTGTACACCATGTAGACAAGAGAGCTACGAGAATA
Found at i:59639194 original size:24 final size:24
Alignment explanation
Indices: 59639167--59639212 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
59639157 TTAGAAATTG
59639167 AATTAGAGACTGAATGAG-ATATCA
1 AATTAGAG-CTGAATGAGTATATCA
*
59639191 AATTAGAGCTTAATGAGTATAT
1 AATTAGAGCTGAATGAGTATAT
59639213 TTTCATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (24 bp):
AATTAGAGCTGAATGAGTATATCA
Found at i:59642335 original size:53 final size:54
Alignment explanation
Indices: 59642267--59642470 Score: 207
Period size: 53 Copynumber: 3.8 Consensus size: 54
59642257 TTTCCTTTTT
* * * * *
59642267 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* *
59642320 GAACTCACCAATGCCATGCCTT-AGCATCGTCTTACATGGGATCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCTTTGCCTTATA
* * * * *
59642374 GTAACTCATCAATGCCATGTCTTAACA-GGTCTTACATGATTTCTTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
* * ** * *
59642428 GAACTTATCAATGCCATGCCTTGGTATAGTCTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
59642471 ATTATCTTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
53 64 0.51
54 39 0.31
55 21 0.17
56 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATA
Found at i:59642420 original size:54 final size:54
Alignment explanation
Indices: 59642278--59642445 Score: 214
Period size: 53 Copynumber: 3.1 Consensus size: 54
59642268 AACTTACCAT
* * * *
59642278 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTAACATGGTCTTACATGGTATCTTTGCCTTATAGAACTCATCAA
* * * *
59642331 TGCCATGCCTTAGCATCGTCTTACATGGGATCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTAACATGGTCTTACATGGTATCTTTGCCTTATAG-AACTCATCAA
* * *
59642386 TGCCATGTCTTAACA-GGTCTTACATGATTTCTTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTAACATGGTCTTACATGGTATCTTTGCCTTATAGAACTCATCAA
59642439 TGCCATG
1 TGCCATG
59642446 CCTTGGTATA
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 51 0.52
54 25 0.26
55 22 0.22
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGTCTTAACATGGTCTTACATGGTATCTTTGCCTTATAGAACTCATCAA
Found at i:59646572 original size:20 final size:20
Alignment explanation
Indices: 59646535--59646574 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
59646525 TAATTAAAAT
*
59646535 AATAATAACATATAATGAAA
1 AATAATAACAGATAATGAAA
59646555 AATAATAATCAGAT-ATGAAA
1 AATAATAA-CAGATAATGAAA
59646575 TATCAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.25
Consensus pattern (20 bp):
AATAATAACAGATAATGAAA
Found at i:59650099 original size:24 final size:24
Alignment explanation
Indices: 59650072--59650120 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
59650062 TTTTAGATAC
*
59650072 AAAGATCTAATTGAAATTAGAGAT
1 AAAGATCCAATTGAAATTAGAGAT
*
59650096 AAAGATCCAATTGAATTTAGAGAT
1 AAAGATCCAATTGAAATTAGAGAT
59650120 A
1 A
59650121 GAGAAGGATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.49, C:0.06, G:0.16, T:0.29
Consensus pattern (24 bp):
AAAGATCCAATTGAAATTAGAGAT
Found at i:59652449 original size:27 final size:26
Alignment explanation
Indices: 59652419--59652496 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
59652409 CTCATATCTG
* *
59652419 TAGGCTAGTATTACTGAAATACCCCTA
1 TAGG-TAGAATTACTAAAATACCCCTA
* *
59652446 TAGGGTAGAATTACTAAAATGCCCCTG
1 TA-GGTAGAATTACTAAAATACCCCTA
59652473 TAAGGTAGAATTACTAAAATACCC
1 T-AGGTAGAATTACTAAAATACCC
59652497 TTGGTTTACA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
27 41 0.93
28 3 0.07
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (26 bp):
TAGGTAGAATTACTAAAATACCCCTA
Found at i:59652513 original size:27 final size:27
Alignment explanation
Indices: 59652481--59652853 Score: 135
Period size: 27 Copynumber: 13.9 Consensus size: 27
59652471 TGTAAGGTAG
59652481 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACTAAAATACCCTTGGTTTACAA
* * * *
59652508 AGTTACCAAAATACCC-TCGATTAGCAA
1 AATTACTAAAATACCCTTGGTTTA-CAA
* * ***
59652535 AATTACCAAAATACCCCTGGTTTGTGA
1 AATTACTAAAATACCCTTGGTTTACAA
* * **
59652562 AATTACTGAAATACCCTTGCTTTGTAA
1 AATTACTAAAATACCCTTGGTTTACAA
* * **
59652589 AATTAC-AGAAATACCCCTGATTTGTAA
1 AATTACTA-AAATACCCTTGGTTTACAA
* ** *
59652616 AATTACTAAAATACCCTCGACTTGCAA
1 AATTACTAAAATACCCTTGGTTTACAA
* * * **
59652643 AATTACTGAAATACCCCT-ATTTGTAA
1 AATTACTAAAATACCCTTGGTTTACAA
* * ** **
59652669 AATTACCAAAATACCCTCGACTTGTAA
1 AATTACTAAAATACCCTTGGTTTACAA
* ** * * ** **
59652696 ATTTACCGAAATACTCTCGACTTGTAA
1 AATTACTAAAATACCCTTGGTTTACAA
* * **
59652723 AATTACTGAAATACCCTTGATTTGTAA
1 AATTACTAAAATACCCTTGGTTTACAA
* * * **
59652750 AATTACCAAAATACCCCTGATTTGGAA
1 AATTACTAAAATACCCTTGGTTTACAA
* ** * **
59652777 AGTTACCGAAATACCCTTGATTTGGAA
1 AATTACTAAAATACCCTTGGTTTACAA
* *
59652804 AATTAC-AGAAATACCATTGGTTTGCAA
1 AATTACTA-AAATACCCTTGGTTTACAA
* *
59652831 AATTA-AAGAAATACCCTTAGTTT
1 AATTACTA-AAATACCCTTGGTTT
59652854 GTAGATTTAC
Statistics
Matches: 285, Mismatches: 54, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
26 25 0.09
27 255 0.89
28 5 0.02
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGGTTTACAA
Found at i:59652539 original size:54 final size:52
Alignment explanation
Indices: 59652481--59652818 Score: 259
Period size: 54 Copynumber: 6.3 Consensus size: 52
59652471 TGTAAGGTAG
* * * *
59652481 AATTACTAAAATACCCTTGGTTTACAAAGTTACCAAAATACCCTCGATTAGCAA
1 AATTACCAAAATACCCCTGGTTTA-AAA-TTACCAAAATACCCTCGATTTGTAA
* ** * *
59652535 AATTACCAAAATACCCCTGGTTTGTGAAATTACTGAAATACCCTTGCTTTGTAA
1 AATTACCAAAATACCCCTGG-TT-TAAAATTACCAAAATACCCTCGATTTGTAA
* * * *
59652589 AATTA-CAGAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACTTGCAA
1 AATTACCA-AAATACCCCTG-GTT-TAAAATTACCAAAATACCCTCGATTTGTAA
** ** *
59652643 AATTACTGAAATACCCCTATTTGTAAAATTACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCCTGGTT-TAAAATTACCAAAATACCCTCGATTTGTAA
* * * * ** *
59652696 ATTTACCGAAATA-CTCTCGACTTGTAAAATTACTGAAATACCCTTGATTTGTAA
1 AATTACCAAAATACCCCT-G-GTT-TAAAATTACCAAAATACCCTCGATTTGTAA
* * * * *
59652750 AATTACCAAAATACCCCTGATTTGGAAAGTTACCGAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCCTGGTTT--AAAATTACCAAAATACCCTCGATTTGTAA
59652804 AATTA-CAGAAATACC
1 AATTACCA-AAATACC
59652819 ATTGGTTTGC
Statistics
Matches: 236, Mismatches: 37, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
52 4 0.02
53 49 0.21
54 174 0.74
55 8 0.03
56 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (52 bp):
AATTACCAAAATACCCCTGGTTTAAAATTACCAAAATACCCTCGATTTGTAA
Found at i:59652842 original size:54 final size:54
Alignment explanation
Indices: 59652516--59652856 Score: 336
Period size: 54 Copynumber: 6.3 Consensus size: 54
59652506 AAAGTTACCA
* * * * * *
59652516 AAATACCCTCGATTAGCAAAATTACCA-AAATACCCCTGGTTTGTGAAATTACTG
1 AAATACCCTTGATTTGTAAAATTA-CAGAAATACCCCTGATTTGTAAAATTACAG
*
59652570 AAATACCCTTGCTTTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTACTA-
1 AAATACCCTTGATTTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTAC-AG
* * * *
59652624 AAATACCCTCGACTTGCAAAATTACTGAAATACCCCT-ATTTGTAAAATTACCA-
1 AAATACCCTTGATTTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTA-CAG
* * * * * * *
59652677 AAATACCCTCGACTTGTAAATTTACCGAAATA-CTCTCGACTTGTAAAATTACTG
1 AAATACCCTTGATTTGTAAAATTACAGAAATACCCCT-GATTTGTAAAATTACAG
* * *
59652731 AAATACCCTTGATTTGTAAAATTACCA-AAATACCCCTGATTTGGAAAGTTACCG
1 AAATACCCTTGATTTGTAAAATTA-CAGAAATACCCCTGATTTGTAAAATTACAG
* ** * * *
59652785 AAATACCCTTGATTTGGAAAATTACAGAAATACCATTGGTTTGCAAAATTAAAG
1 AAATACCCTTGATTTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTACAG
59652839 AAATACCCTT-AGTTTGTA
1 AAATACCCTTGA-TTTGTA
59652857 GATTTACCAA
Statistics
Matches: 241, Mismatches: 36, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
52 3 0.01
53 49 0.20
54 185 0.77
55 4 0.02
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (54 bp):
AAATACCCTTGATTTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTACAG
Found at i:59652875 original size:81 final size:81
Alignment explanation
Indices: 59652481--59652876 Score: 383
Period size: 81 Copynumber: 4.9 Consensus size: 81
59652471 TGTAAGGTAG
* * ** * * * *
59652481 AATTACTAAAATACCCTTGGTTTACAAAGTTACCAAAATA-CCCTCGATTAGCAAAATTACCAAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT-GATTTGTAAATTTACCAAA
* **
59652545 ATACCCCTGGTTTGTG-A
65 ATACCCTTGACTTG-GAA
* * *
59652562 AATTACTGAAATACCCTTGCTTTGTAAAATTA-CAGAAATACCCCTGATTTGTAAAATTACTAAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCA-AAATACCCCTGATTTGTAAATTTACCAAA
* *
59652626 ATACCCTCGACTTGCAA
65 ATACCCTTGACTTGGAA
* * *
59652643 AATTACTGAAATACCCCT-ATTTGTAAAATTACCAAAATA-CCCTCGACTTGTAAATTTACCGAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT-GATTTGTAAATTTACCAAA
* * *
59652706 ATACTCTCGACTTGTAA
65 ATACCCTTGACTTGGAA
* * *
59652723 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGGAAAGTTACCGAAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGTAAATTTACCAAAA
*
59652788 TACCCTTGATTTGGAA
66 TACCCTTGACTTGGAA
* * * * * * *
59652804 AATTACAGAAATACCATTGGTTTGCAAAATTA-AAGAAATA-CCCTTAGTTTGTAGATTTACCAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCA-AAATACCCCTGA-TTTGTAAATTTACCAA
*
59652867 AACACCCTTG
64 AATACCCTTG
59652877 TAGGGTGAAA
Statistics
Matches: 266, Mismatches: 40, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
79 4 0.02
80 72 0.27
81 182 0.68
82 8 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (81 bp):
AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGTAAATTTACCAAAA
TACCCTTGACTTGGAA
Found at i:59653159 original size:41 final size:41
Alignment explanation
Indices: 59653114--59653198 Score: 143
Period size: 41 Copynumber: 2.1 Consensus size: 41
59653104 GGAGGAAGAA
* *
59653114 ATTGAGGATCGCATGGTTGCCTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCCTGACAACCATGGATCCACCG
*
59653155 ATTGAGGATCGCATGGTTGCTTGACAACCATGGATCCACCG
1 ATTGAGGATCGCATGGTTGCCTGACAACCATGGATCCACCG
59653196 ATT
1 ATT
59653199 AAGAATTGCA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCCTGACAACCATGGATCCACCG
Found at i:59653218 original size:41 final size:41
Alignment explanation
Indices: 59653121--59653219 Score: 108
Period size: 41 Copynumber: 2.4 Consensus size: 41
59653111 GAAATTGAGG
* * * * * * *
59653121 ATCGCATGGTTGCCTGACGACCGTGGATCCACCGATTGAGG
1 ATCGCATAGTGGCTTGACAACCATGGATCCACCGATTAAGA
* *
59653162 ATCGCATGGTTGCTTGACAACCATGGATCCACCGATTAAGA
1 ATCGCATAGTGGCTTGACAACCATGGATCCACCGATTAAGA
*
59653203 ATTGCATAGTGGCTTGA
1 ATCGCATAGTGGCTTGA
59653220 TGACCGTGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
ATCGCATAGTGGCTTGACAACCATGGATCCACCGATTAAGA
Found at i:59657972 original size:40 final size:40
Alignment explanation
Indices: 59657915--59658197 Score: 292
Period size: 40 Copynumber: 7.1 Consensus size: 40
59657905 TCGAATGATG
* * * *
59657915 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
59657955 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* ** * *
59657995 TTCGGGTTAAGTCCCGAAAGCACTTGTGCGAGTTACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
59658035 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
59658074 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
**
59658114 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * * **
59658154 ACCGGGCTATGTCCC-AAGGCATTTGAACGAG-TAGCTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
59658193 TCCGG
1 TCCGG
59658198 TTAAATTCCG
Statistics
Matches: 207, Mismatches: 27, Indels: 19
0.82 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 59 0.29
40 137 0.66
41 9 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:59658055 original size:80 final size:80
Alignment explanation
Indices: 59657915--59658197 Score: 341
Period size: 79 Copynumber: 3.5 Consensus size: 80
59657905 TCGAATGATG
* * * *
59657915 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
59657980 GTGCGAGTTACTAAAT
65 GTGCGAGTTACTAAAT
* *
59657996 T-CGGGTTAAGTCCCGAAAGCACTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
59658060 GTGCGAGTTACT-AAT
65 GTGCGAGTTACTAAAT
* **
59658075 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATATCCGGACTAAGAT-CCGAAGGCATT
59658138 TGTGCGAGTTACTATAA-
64 TGTGCGAGTTACTA-AAT
*
59658155 -CCGGGCTATGTCCC-AAGGCATT-TGAACGAG-TAGCTATATCCGG
1 TCCGGGCTAAGTCCCGAAGGCATTGTG--CGAGTTA-CTATATCCGG
59658198 TTAAATTCCG
Statistics
Matches: 179, Mismatches: 13, Indels: 22
0.84 0.06 0.10
Matches are distributed among these distances:
77 2 0.01
78 5 0.03
79 90 0.50
80 73 0.41
81 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAAT
Found at i:59666077 original size:40 final size:40
Alignment explanation
Indices: 59666033--59666303 Score: 238
Period size: 40 Copynumber: 6.8 Consensus size: 40
59666023 GGGCTAAGTC
* * *
59666033 CCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTTAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTTAGAT
* *
59666073 CCGAAGGCATTTGTGCGAGTTACTAAATCCGG-GTTA-AGT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGACTTAGA-T
* *
59666112 CCCGAAGGCATTTGTGCGAGTTACTATATTCGGACTAAGAT
1 -CCGAAGGCATTTGTGCGAGTTACTATATCCGGACTTAGAT
* * *
59666153 CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTATA-TCCGGACTTAGAT
* * *
59666192 CCGAAGGCATTGGTGCGAGTTACTAAATCCGG-GTTA-AGT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGACTTAGA-T
* *
59666231 CCCGAAGGCATTTGTGCGAGTTACTATAACCGGGC-TATG-T
1 -CCGAAGGCATTTGTGCGAGTTACTATATCCGGACTTA-GAT
**
59666271 CCCGAAGGCATTTGAACGAG-TAGCTATATCCGG
1 -CCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
59666304 TTAAATTCCG
Statistics
Matches: 194, Mismatches: 23, Indels: 28
0.79 0.09 0.11
Matches are distributed among these distances:
38 3 0.02
39 36 0.19
40 144 0.74
41 10 0.05
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGACTTAGAT
Found at i:59666153 original size:80 final size:80
Alignment explanation
Indices: 59666020--59666303 Score: 371
Period size: 80 Copynumber: 3.6 Consensus size: 80
59666010 TCGAATGATG
* * * *
59666020 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTTAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGATCCGAAGGCATT
59666084 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
59666100 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATTCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
*
59666165 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAA
* * **
59666180 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGAT-CCGAAGGCATT
59666243 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
59666260 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
59666304 TTAAATTCCG
Statistics
Matches: 180, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 70 0.39
80 102 0.57
81 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:59666303 original size:119 final size:119
Alignment explanation
Indices: 59666073--59666291 Score: 359
Period size: 119 Copynumber: 1.8 Consensus size: 119
59666063 GGACTTAGAT
*
59666073 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
** **
59666138 TATTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGC
66 TAACCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAATTCCGGGCTAAGC
59666192 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
* *
59666257 TAACCGGGCTATG-TCCCGAAGGCATTTGAACGAGT
66 TAACCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
59666292 AGCTATATCC
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
118 1 0.01
119 91 0.99
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
TAACCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAATTCCGGGCTAAGC
Found at i:59674577 original size:55 final size:54
Alignment explanation
Indices: 59674446--59674615 Score: 155
Period size: 55 Copynumber: 3.1 Consensus size: 54
59674436 ATTTCTTGAT
* * * * *
59674446 ATGGTCTTACGTG-GTATCCTTGCCTTAT-GACCTCACCATTGCCATGCCTTGGC
1 ATGGTCTTACATGAG-ATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGGC
* * * * ** * * *
59674499 ATGGTTTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGCCATGTCTTGAC
1 ATGGTCTTACATGAGATCCTTGCCTTATA-AAACTTACCAATGCCATGCCTTGGC
** *
59674554 ATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATGCCATGCCTTGGC
1 ATGGTCTTACATGAGATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGGC
59674608 ATGGTCTT
1 ATGGTCTT
59674616 CCTTGGTGTC
Statistics
Matches: 91, Mismatches: 23, Indels: 5
0.76 0.19 0.04
Matches are distributed among these distances:
53 23 0.25
54 28 0.31
55 40 0.44
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (54 bp):
ATGGTCTTACATGAGATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGGC
Found at i:59687481 original size:93 final size:93
Alignment explanation
Indices: 59687368--59687539 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
59687358 CGCCCATAAG
*
59687368 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
59687432 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
59687461 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
59687526 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
59687540 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:59687534 original size:46 final size:46
Alignment explanation
Indices: 59687361--59687536 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
59687351 TGTAACCCGC
* *
59687361 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
59687407 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
59687457 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
59687500 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
59687537 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:59703211 original size:24 final size:24
Alignment explanation
Indices: 59703184--59703232 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
59703174 TTTTAGATAC
*
59703184 AAAGATCTAATTGAAATTAGAGAT
1 AAAGATCCAATTGAAATTAGAGAT
*
59703208 AAAGATCCAATTGAATTTAGAGAT
1 AAAGATCCAATTGAAATTAGAGAT
59703232 A
1 A
59703233 GAGAAGGATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.49, C:0.06, G:0.16, T:0.29
Consensus pattern (24 bp):
AAAGATCCAATTGAAATTAGAGAT
Found at i:59705545 original size:27 final size:27
Alignment explanation
Indices: 59705515--59705583 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
59705505 TGTAGCTAGT
* *
59705515 ATTACTGAAATACCCCTATAGGGTAGA
1 ATTACTAAAATACCCCTATAAGGTAGA
* *
59705542 ATTACTAAAATGCCCCTGTAAGGTAGA
1 ATTACTAAAATACCCCTATAAGGTAGA
59705569 ATTACTAAAATACCC
1 ATTACTAAAATACCC
59705584 TGGTTTACAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.26
Consensus pattern (27 bp):
ATTACTAAAATACCCCTATAAGGTAGA
Found at i:59705599 original size:26 final size:25
Alignment explanation
Indices: 59705568--59705715 Score: 106
Period size: 26 Copynumber: 5.7 Consensus size: 25
59705558 TGTAAGGTAG
59705568 AATTACTAAAATACCCTGGTTTACA
1 AATTACTAAAATACCCTGGTTTACA
* * *
59705593 AAGTTACCAAAATACCCTCGATTAGCAA
1 AA-TTACTAAAATACCCTGGTTTA-C-A
* *
59705621 AATTACCAAAATACCCTGGTTGT-GA
1 AATTACTAAAATACCCTGGTT-TACA
* *
59705646 AATTACTGAAATACCCTTGCTTTGTA-A
1 AATTACTAAAATACCC-TG-GTT-TACA
*
59705673 AATTAC-AGAAATACCCCTGATTGTA-A
1 AATTACTA-AAATA-CCCTGGTT-TACA
59705699 AATTACTAAAATACCCT
1 AATTACTAAAATACCCT
59705716 CGACTTGCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
25 21 0.21
26 37 0.36
27 37 0.36
28 7 0.07
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (25 bp):
AATTACTAAAATACCCTGGTTTACA
Found at i:59705628 original size:27 final size:26
Alignment explanation
Indices: 59705568--59705900 Score: 243
Period size: 27 Copynumber: 12.6 Consensus size: 26
59705558 TGTAAGGTAG
* *
59705568 AATTACTAAAATACCCT-GGTT-TACA
1 AATTACCAAAATACCCTCGATTGTA-A
*
59705593 AAGTTACCAAAATACCCTCGATTAGCAA
1 AA-TTACCAAAATACCCTCGATT-GTAA
* *
59705621 AATTACCAAAATACCCT-GGTTGTGA
1 AATTACCAAAATACCCTCGATTGTAA
** * *
59705646 AATTACTGAAATACCCTTGCTTTGTAA
1 AATTACCAAAATACCCTCG-ATTGTAA
59705673 AATTA-CAGAAATACCC-CTGATTGTAA
1 AATTACCA-AAATACCCTC-GATTGTAA
* *
59705699 AATTACTAAAATACCCTCGACTTGCAA
1 AATTACCAAAATACCCTCGA-TTGTAA
** *
59705726 AATTACTGAAATACCC-CTATTTGTAA
1 AATTACCAAAATACCCTCGA-TTGTAA
59705752 AA-TACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGA-TTGTAA
* * *
59705778 ATTTACCGAAATACTCTCGACTTGTAA
1 AATTACCAAAATACCCTCGA-TTGTAA
** *
59705805 AATTACTGAAATACCCTTGATTTGTAA
1 AATTACCAAAATACCCTCGA-TTGTAA
*
59705832 AATTACCAAAATACCC-CTGATTTGGAA
1 AATTACCAAAATACCCTC-GA-TTGTAA
* * * *
59705859 AGTTACCGAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCTCGA-TTGTAA
59705886 AATTA-CAGAAATACC
1 AATTACCA-AAATACC
59705901 ATTGGTTTGC
Statistics
Matches: 251, Mismatches: 41, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
25 30 0.12
26 58 0.23
27 159 0.63
28 3 0.01
29 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTCGATTGTAA
Found at i:59705632 original size:53 final size:52
Alignment explanation
Indices: 59705568--59705900 Score: 289
Period size: 53 Copynumber: 6.3 Consensus size: 52
59705558 TGTAAGGTAG
* * * *
59705568 AATTACTAAAATACCCTGGTT-TACAAAGTTACCAAAATACCCTCGATTAGCAA
1 AATTACCAAAATACCCTGATTGTA-AAA-TTACCAAAATACCCTCGATTTGTAA
* * ** * *
59705621 AATTACCAAAATACCCTGGTTGTGAAATTACTGAAATACCCTTGCTTTGTAA
1 AATTACCAAAATACCCTGATTGTAAAATTACCAAAATACCCTCGATTTGTAA
* * *
59705673 AATTA-CAGAAATACCCCTGATTGTAAAATTACTAAAATACCCTCGACTTGCAA
1 AATTACCA-AAATA-CCCTGATTGTAAAATTACCAAAATACCCTCGATTTGTAA
** *
59705726 AATTACTGAAATACCCCT-ATTTGTAAAA-TACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATA-CCCTGA-TTGTAAAATTACCAAAATACCCTCGATTTGTAA
* * * ** *
59705778 ATTTACCGAAATACTCTCGACTTGTAAAATTACTGAAATACCCTTGATTTGTAA
1 AATTACCAAAATACCCT-GA-TTGTAAAATTACCAAAATACCCTCGATTTGTAA
* * * * *
59705832 AATTACCAAAATACCCCTGATTTGGAAAGTTACCGAAATACCCTTGATTTGGAA
1 AATTACCAAAATA-CCCTGA-TTGTAAAATTACCAAAATACCCTCGATTTGTAA
59705886 AATTA-CAGAAATACC
1 AATTACCA-AAATACC
59705901 ATTGGTTTGC
Statistics
Matches: 235, Mismatches: 35, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
51 5 0.02
52 63 0.27
53 91 0.39
54 73 0.31
55 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (52 bp):
AATTACCAAAATACCCTGATTGTAAAATTACCAAAATACCCTCGATTTGTAA
Found at i:59705830 original size:54 final size:54
Alignment explanation
Indices: 59705602--59705938 Score: 314
Period size: 54 Copynumber: 6.3 Consensus size: 54
59705592 AAAGTTACCA
* * * * *
59705602 AAATACCCTCGATTAGCAAAATTACCA-AAATA-CCCTG-GTTGTGAAATTACTG
1 AAATACCCTTGATTTGTAAAATTA-CAGAAATACCCCTGATTTGTAAAATTACTG
* *
59705654 AAATACCCTTGCTTTGTAAAATTACAGAAATACCCCTGA-TTGTAAAATTACTA
1 AAATACCCTTGATTTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTACTG
* * * * **
59705707 AAATACCCTCGACTTGCAAAATTACTGAAATACCCCT-ATTTGTAAAA-TACCA
1 AAATACCCTTGATTTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTACTG
* * * * * *
59705759 AAATACCCTCGACTTGTAAATTTACCGAAATA-CTCTCGACTTGTAAAATTACTG
1 AAATACCCTTGATTTGTAAAATTACAGAAATACCCCT-GATTTGTAAAATTACTG
* * *
59705813 AAATACCCTTGATTTGTAAAATTACCA-AAATACCCCTGATTTGGAAAGTTACCG
1 AAATACCCTTGATTTGTAAAATTA-CAGAAATACCCCTGATTTGTAAAATTACTG
* ** * * **
59705867 AAATACCCTTGATTTGGAAAATTACAGAAATACCATTGGTTTGCAAAATTAAAG
1 AAATACCCTTGATTTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTACTG
59705921 AAATACCCTT-AGTTTGTA
1 AAATACCCTTGA-TTTGTA
59705939 GATTTACCAA
Statistics
Matches: 237, Mismatches: 37, Indels: 20
0.81 0.13 0.07
Matches are distributed among these distances:
51 5 0.02
52 59 0.25
53 69 0.29
54 100 0.42
55 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.30
Consensus pattern (54 bp):
AAATACCCTTGATTTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTACTG
Found at i:59705909 original size:27 final size:27
Alignment explanation
Indices: 59705602--59705930 Score: 246
Period size: 27 Copynumber: 12.4 Consensus size: 27
59705592 AAAGTTACCA
* * *
59705602 AAATACCCTCGATTAGCAAAATTACCA-
1 AAATACCCTTGATTTGGAAAATTA-CAG
* *
59705629 AAATACCC-TG-GTTGTG-AAATTACTG
1 AAATACCCTTGATTTG-GAAAATTACAG
* *
59705654 AAATACCCTTGCTTTGTAAAATTACAG
1 AAATACCCTTGATTTGGAAAATTACAG
* *
59705681 AAATACCCCTGA-TTGTAAAATTACTA-
1 AAATACCCTTGATTTGGAAAATTAC-AG
* * * *
59705707 AAATACCCTCGACTTGCAAAATTACTG
1 AAATACCCTTGATTTGGAAAATTACAG
* *
59705734 AAATACCCCT-ATTTGTAAAA-TACCA-
1 AAATACCCTTGATTTGGAAAATTA-CAG
* * * * *
59705759 AAATACCCTCGACTTGTAAATTTACCG
1 AAATACCCTTGATTTGGAAAATTACAG
* * * * *
59705786 AAATACTCTCGACTTGTAAAATTACTG
1 AAATACCCTTGATTTGGAAAATTACAG
*
59705813 AAATACCCTTGATTTGTAAAATTACCA-
1 AAATACCCTTGATTTGGAAAATTA-CAG
* * *
59705840 AAATACCCCTGATTTGGAAAGTTACCG
1 AAATACCCTTGATTTGGAAAATTACAG
59705867 AAATACCCTTGATTTGGAAAATTACAG
1 AAATACCCTTGATTTGGAAAATTACAG
* * * *
59705894 AAATACCATTGGTTTGCAAAATTAAAG
1 AAATACCCTTGATTTGGAAAATTACAG
59705921 AAATACCCTT
1 AAATACCCTT
59705931 AGTTTGTAGA
Statistics
Matches: 245, Mismatches: 43, Indels: 28
0.78 0.14 0.09
Matches are distributed among these distances:
24 1 0.00
25 26 0.11
26 44 0.18
27 173 0.71
28 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.29
Consensus pattern (27 bp):
AAATACCCTTGATTTGGAAAATTACAG
Found at i:59705928 original size:81 final size:80
Alignment explanation
Indices: 59705568--59705917 Score: 356
Period size: 79 Copynumber: 4.4 Consensus size: 80
59705558 TGTAAGGTAG
* * ** * * *
59705568 AATTACTAAAATACCC-TGGTTTACAAAGTTACCAAAATA-CCCTCGATTAGCAAAATTACCAAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT-GATT-GTAAAATTACCGAA
* **
59705631 ATACCCT-G-GTTGTGA
64 ATACCCTCGACTTGCAA
* **
59705646 AATTACTGAAATACCCTTGCTTTGTAAAATTA-CAGAAATACCCCTGATTGTAAAATTACTAAAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCA-AAATACCCCTGATTGTAAAATTACCGAAA
59705710 TACCCTCGACTTGCAA
65 TACCCTCGACTTGCAA
* *
59705726 AATTACTGAAATACCCCT-ATTTGTAAAA-TACCAAAATA-CCCTCGACTTGTAAATTTACCGAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT-GA-TTGTAAAATTACCGAA
* *
59705788 ATACTCTCGACTTGTAA
64 ATACCCTCGACTTGCAA
* *
59705805 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGGAAAGTTACCGAAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGA-TTGTAAAATTACCGAAA
* * *
59705870 TACCCTTGATTTGGAA
65 TACCCTCGACTTGCAA
* * * *
59705886 AATTACAGAAATACCATTGGTTTGCAAAATTA
1 AATTACTGAAATACCCTTGATTTGTAAAATTA
59705918 AAGAAATACC
Statistics
Matches: 232, Mismatches: 29, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
77 4 0.02
78 45 0.19
79 77 0.33
80 35 0.15
81 67 0.29
82 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (80 bp):
AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTGTAAAATTACCGAAAT
ACCCTCGACTTGCAA
Found at i:59705958 original size:81 final size:81
Alignment explanation
Indices: 59705568--59705956 Score: 359
Period size: 81 Copynumber: 4.9 Consensus size: 81
59705558 TGTAAGGTAG
* * ** * * * *
59705568 AATTACTAAAATACCC-TGGTTTACAAAGTTACCAAAATA-CCCTCGATTAGCAAAATTACCAAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT-GATTTGTAAATTTACCAAA
* **
59705631 ATACCCT-G-GTTGTGA
65 ATACCCTCGACTTGCAA
* * *
59705646 AATTACTGAAATACCCTTGCTTTGTAAAATTA-CAGAAATACCCCTGA-TTGTAAAATTACTAAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCA-AAATACCCCTGATTTGTAAATTTACCAAA
59705709 ATACCCTCGACTTGCAA
65 ATACCCTCGACTTGCAA
* * *
59705726 AATTACTGAAATACCCCT-ATTTGTAAAA-TACCAAAATA-CCCTCGACTTGTAAATTTACCGAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT-GATTTGTAAATTTACCAAA
* *
59705788 ATACTCTCGACTTGTAA
65 ATACCCTCGACTTGCAA
* * *
59705805 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGGAAAGTTACCGAAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGTAAATTTACCAAAA
* * *
59705870 TACCCTTGATTTGGAA
66 TACCCTCGACTTGCAA
* * * * * * *
59705886 AATTACAGAAATACCATTGGTTTGCAAAATTA-AAGAAATA-CCCTTAGTTTGTAGATTTACCAA
1 AATTACTGAAATACCCTTGATTTGTAAAATTACCA-AAATACCCCTGA-TTTGTAAATTTACCAA
*
59705949 AACACCCT
64 AATACCCT
59705957 TGTAGGGTGA
Statistics
Matches: 261, Mismatches: 37, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
77 4 0.02
78 46 0.18
79 75 0.29
80 41 0.16
81 91 0.35
82 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (81 bp):
AATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGTAAATTTACCAAAA
TACCCTCGACTTGCAA
Found at i:59706239 original size:41 final size:41
Alignment explanation
Indices: 59706194--59706278 Score: 143
Period size: 41 Copynumber: 2.1 Consensus size: 41
59706184 GGAGGAAGAA
* *
59706194 ATTGAGGATCGCATGGTTGCCTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCCTGACAACCATGGATCCACCG
*
59706235 ATTGAGGATCGCATGGTTGCTTGACAACCATGGATCCACCG
1 ATTGAGGATCGCATGGTTGCCTGACAACCATGGATCCACCG
59706276 ATT
1 ATT
59706279 AAGAATTGCA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCCTGACAACCATGGATCCACCG
Found at i:59706298 original size:41 final size:41
Alignment explanation
Indices: 59706201--59706299 Score: 108
Period size: 41 Copynumber: 2.4 Consensus size: 41
59706191 GAAATTGAGG
* * * * * * *
59706201 ATCGCATGGTTGCCTGACGACCGTGGATCCACCGATTGAGG
1 ATCGCATAGTGGCTTGACAACCATGGATCCACCGATTAAGA
* *
59706242 ATCGCATGGTTGCTTGACAACCATGGATCCACCGATTAAGA
1 ATCGCATAGTGGCTTGACAACCATGGATCCACCGATTAAGA
*
59706283 ATTGCATAGTGGCTTGA
1 ATCGCATAGTGGCTTGA
59706300 TGACCGTGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
ATCGCATAGTGGCTTGACAACCATGGATCCACCGATTAAGA
Found at i:59711060 original size:40 final size:40
Alignment explanation
Indices: 59711003--59711286 Score: 292
Period size: 40 Copynumber: 7.1 Consensus size: 40
59710993 TCGAATGATG
* * * *
59711003 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
59711043 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* ** * *
59711083 TTCGGGTTAAGTCCCGAAAGCACTTGTGCGAGTTACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
59711123 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
59711162 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
**
59711202 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * * * **
59711242 ACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
59711282 TCCGG
1 TCCGG
59711287 TTAAATTCCG
Statistics
Matches: 207, Mismatches: 28, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
39 38 0.18
40 160 0.77
41 9 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:59711143 original size:80 final size:80
Alignment explanation
Indices: 59711003--59711286 Score: 341
Period size: 80 Copynumber: 3.5 Consensus size: 80
59710993 TCGAATGATG
* * * *
59711003 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
59711068 GTGCGAGTTACTAAAT
65 GTGCGAGTTACTAAAT
* *
59711084 T-CGGGTTAAGTCCCGAAAGCACTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
59711148 GTGCGAGTTACT-AAT
65 GTGCGAGTTACTAAAT
* **
59711163 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATATCCGGACTAAGAT-CCGAAGGCATT
59711226 TGTGCGAGTTACTATAA-
64 TGTGCGAGTTACTA-AAT
* *
59711243 -CCGGGCTATGTCCCAAAGGCATT-TGAACGAG-TAGCTATATCCGG
1 TCCGGGCTAAGTCCCGAAGGCATTGTG--CGAGTTA-CTATATCCGG
59711287 TTAAATTCCG
Statistics
Matches: 179, Mismatches: 14, Indels: 21
0.84 0.07 0.10
Matches are distributed among these distances:
78 5 0.03
79 71 0.40
80 94 0.53
81 9 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAAT
Found at i:59711262 original size:119 final size:121
Alignment explanation
Indices: 59711004--59711267 Score: 358
Period size: 119 Copynumber: 2.2 Consensus size: 121
59710994 CGAATGATGT
* * *
59711004 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGACCCGAAGGCATTG
* *
59711068 GTGCGAGTTACTAAATTCGGGTTAAGTCCCGAAAGCACTTGTGCGAGTTACTATAT
66 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAAGCACTTGTGCGAGTTACTATAA
* * * *
59711124 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGACCCGAAGGCAT
* *
59711185 TGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
64 TGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAAGCACTTGTGCGAGTTACTATAA
* *
59711243 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
59711268 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
118 1 0.01
119 83 0.66
120 32 0.25
121 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGACCCGAAGGCATTG
GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAAGCACTTGTGCGAGTTACTATAA
Found at i:59719207 original size:40 final size:40
Alignment explanation
Indices: 59719150--59719433 Score: 355
Period size: 40 Copynumber: 7.1 Consensus size: 40
59719140 TCGAATGATG
* * *
59719150 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
59719190 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
*
59719230 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
59719270 TCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
59719309 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
59719349 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
59719389 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
59719429 TCCGG
1 TCCGG
59719434 TTAAATTCCG
Statistics
Matches: 214, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
39 38 0.18
40 167 0.78
41 9 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:59719362 original size:119 final size:121
Alignment explanation
Indices: 59719150--59719414 Score: 396
Period size: 119 Copynumber: 2.2 Consensus size: 121
59719140 TCGAATGATG
* *
59719150 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
* *
59719214 TGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
66 GGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* * *
59719270 TCCGGGCTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAT-TCCGGGCTAAG-CCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGACCCGAAGGCA
59719331 TTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
64 TTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* *
59719389 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
59719415 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
118 1 0.01
119 87 0.66
120 34 0.26
121 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
GGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
Found at i:59721533 original size:46 final size:46
Alignment explanation
Indices: 59721466--59721591 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
59721456 TGGTTGAGCA
*
59721466 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACG
* *
59721512 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACG
* *
59721558 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTA
59721592 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACG
Found at i:59724976 original size:13 final size:13
Alignment explanation
Indices: 59724955--59724991 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
59724945 AATAAACAGA
59724955 TAATAAAATCAGT
1 TAATAAAATCAGT
*
59724968 TAATCAAATCAGT
1 TAATAAAATCAGT
*
59724981 TAATAGAATCA
1 TAATAAAATCA
59724992 ATTGGTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30
Consensus pattern (13 bp):
TAATAAAATCAGT
Found at i:59725212 original size:22 final size:21
Alignment explanation
Indices: 59725169--59725225 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
59725159 TTCCCTACTG
59725169 ATATT-TATTTTAAATATATA
1 ATATTATATTTTAAATATATA
* *
59725189 ATATTATATATTTAAATTTGTA
1 ATATTATAT-TTTAAATATATA
*
59725211 ATGGTTATATTTTAA
1 AT-ATTATATTTTAA
59725226 TACTTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 5 0.16
21 3 0.10
22 17 0.55
23 6 0.19
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
ATATTATATTTTAAATATATA
Found at i:59726078 original size:32 final size:33
Alignment explanation
Indices: 59726015--59726078 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
59726005 TTATTTATTT
**
59726015 AAATAATTCTAAATTAAAATCAATTTTGAATTG
1 AAATAATTCTAAATTAAAATCAATTCAGAATTG
**
59726048 AAATAA-TCTAAATTTGAATCAATTCAGAATT
1 AAATAATTCTAAATTAAAATCAATTCAGAATT
59726079 AAAGATTCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 21 0.78
33 6 0.22
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (33 bp):
AAATAATTCTAAATTAAAATCAATTCAGAATTG
Found at i:59728485 original size:18 final size:18
Alignment explanation
Indices: 59728462--59728496 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
59728452 TACCGTAACT
*
59728462 CTTTTTATTGTGCAAATC
1 CTTTTTAATGTGCAAATC
*
59728480 CTTTTTAATGTTCAAAT
1 CTTTTTAATGTGCAAAT
59728497 TTAAAATTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (18 bp):
CTTTTTAATGTGCAAATC
Found at i:59728896 original size:25 final size:25
Alignment explanation
Indices: 59728875--59728948 Score: 139
Period size: 25 Copynumber: 3.0 Consensus size: 25
59728865 ATCAATAATA
59728875 AAATTATTATTTTATTTAAATATTT
1 AAATTATTATTTTATTTAAATATTT
59728900 AAATTATTATTTTATTTAAATATTT
1 AAATTATTATTTTATTTAAATATTT
*
59728925 AAATTATTATTTTATTTATATATT
1 AAATTATTATTTTATTTAAATATT
59728949 AATATAAAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
AAATTATTATTTTATTTAAATATTT
Found at i:59728906 original size:17 final size:17
Alignment explanation
Indices: 59728887--59728932 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
59728877 ATTATTATTT
59728887 TATTTAAA-TATTTAAA
1 TATTTAAATTATTTAAA
**
59728903 T-TATTATTTTATTTAAA
1 TAT-TTAAATTATTTAAA
59728920 TATTTAAATTATT
1 TATTTAAATTATT
59728933 ATTTTATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 5
0.72 0.12 0.16
Matches are distributed among these distances:
15 1 0.04
16 4 0.17
17 17 0.74
18 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTTAAATTATTTAAA
Found at i:59730682 original size:20 final size:20
Alignment explanation
Indices: 59730657--59730701 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
59730647 AGGGACTAAA
* *
59730657 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
59730677 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
59730697 ATGAA
1 ATGAA
59730702 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:59739508 original size:197 final size:197
Alignment explanation
Indices: 59739173--59739541 Score: 702
Period size: 197 Copynumber: 1.9 Consensus size: 197
59739163 TAAGAAACAT
59739173 TATCAGAACTAGAATCAAAATGAGAATCAGAATCAAACCGCAGAATCAAATTTAGAATGAAGCCC
1 TATCAGAACTAGAATCAAAATGAGAATCAGAATCAAACCGCAGAATCAAATTTAGAATGAAGCCC
*
59739238 ATAGGCCCATAACAGATACCGAACATATATTTCATGTATGCAGAAAACCCAACCCATGTCCAGTC
66 ATAGGCCCATAACAGATACCGAACAGATATTTCATGTATGCAGAAAACCCAACCCATGTCCAGTC
59739303 GTATACACCCCCGTACCAACCTTACACCATGTATCTATTTAGTATTCGATGAACTATCTTGTAGC
131 GTATACACCCCCGTACCAACCTTACACCATGTATCTATTTAGTATTCGATGAACTATCTTGTAGC
59739368 AG
196 AG
59739370 TATCAGAACTAGAATCAAAATGAGAATCAGAATCAAACCGCAGAATCAAATTTAGAATGAAGCCC
1 TATCAGAACTAGAATCAAAATGAGAATCAGAATCAAACCGCAGAATCAAATTTAGAATGAAGCCC
* * *
59739435 ATAGGTCCATAACAGATACTGAACAGATATTTCATGTATGCAGAAAACCCAACCCATGTCCTGTC
66 ATAGGCCCATAACAGATACCGAACAGATATTTCATGTATGCAGAAAACCCAACCCATGTCCAGTC
59739500 GTATACACCCCCGTACCAACCTTACACCATGTATCTATTTAG
131 GTATACACCCCCGTACCAACCTTACACCATGTATCTATTTAG
59739542 GTGAAGCAAA
Statistics
Matches: 168, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
197 168 1.00
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (197 bp):
TATCAGAACTAGAATCAAAATGAGAATCAGAATCAAACCGCAGAATCAAATTTAGAATGAAGCCC
ATAGGCCCATAACAGATACCGAACAGATATTTCATGTATGCAGAAAACCCAACCCATGTCCAGTC
GTATACACCCCCGTACCAACCTTACACCATGTATCTATTTAGTATTCGATGAACTATCTTGTAGC
AG
Found at i:59745946 original size:39 final size:39
Alignment explanation
Indices: 59745860--59746121 Score: 379
Period size: 39 Copynumber: 6.7 Consensus size: 39
59745850 TAATTGAGGA
* * * *
59745860 TTATAACCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGAT-
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG-G-TG
*
59745898 TTATATCCGGGCTAAGTCCCGGAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
59745937 TTATATCCGGGCTACGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
59745976 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
59746015 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
59746054 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
59746093 TTATATCTGGGCTAAG-CCTCAAAGGCATT
1 TTATATCCGGGCTAAGTCC-CGAAGGCATT
59746122 TGTGTTGGAA
Statistics
Matches: 207, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
38 28 0.14
39 177 0.86
40 2 0.01
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:59747644 original size:40 final size:41
Alignment explanation
Indices: 59747504--59747640 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 41
59747494 ACCCAAGTAT
59747504 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGGATCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
59747543 CTTCGGG-TCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGATCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * *
59747583 CTTCGGGA-CATAGCCCGGTTATAGCAACTCGCACGAATGC
1 CTTCGGGATCTTAGCCCGGATATAACAACTCGCACAAATGC
*
59747623 CTTC-GGATCTTAGTCCGG
1 CTTCGGGATCTTAGCCCGG
59747641 TTATCATCCG
Statistics
Matches: 82, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 15 0.18
40 65 0.79
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (41 bp):
CTTCGGGATCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:59749819 original size:24 final size:24
Alignment explanation
Indices: 59749790--59749838 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
59749780 CATTGCTTAC
59749790 AACTTACTAAGCATAGAAATGCTT
1 AACTTACTAAGCATAGAAATGCTT
59749814 AACTTACTAAGCATAGAAATGCTT
1 AACTTACTAAGCATAGAAATGCTT
59749838 A
1 A
59749839 CTTTGTTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.29
Consensus pattern (24 bp):
AACTTACTAAGCATAGAAATGCTT
Found at i:59760222 original size:46 final size:46
Alignment explanation
Indices: 59760154--59760290 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
59760144 TATATATACA
* * *
59760154 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* * *
59760200 CATCTCATACACGTTTCGCATTAGCCATTTGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* *
59760246 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTT-CCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTTGG-CTTTACCACATAT
59760291 ATACATGTTC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 75 0.95
47 4 0.05
ACGTcount: A:0.25, C:0.30, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
Found at i:59760325 original size:47 final size:47
Alignment explanation
Indices: 59760264--59760455 Score: 269
Period size: 47 Copynumber: 4.1 Consensus size: 47
59760254 ACACATTTCG
* **
59760264 CATTAGCCATTCGGCCTT-TCCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT-CACATATACGCATGTTCACATTCATCA
* * * *
59760311 CATCGGCCCTTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
59760358 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
59760405 CATTGGCCATTCGGCCTTATCACACATACGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
59760452 CATT
1 CATT
59760456 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
47 131 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
Found at i:59764529 original size:40 final size:40
Alignment explanation
Indices: 59764496--59764847 Score: 454
Period size: 40 Copynumber: 8.8 Consensus size: 40
59764486 CCAGCATGAT
* * * * * *
59764496 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
59764536 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
59764576 TGCTCTTCGGAACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
59764616 TGCTCTTTGGGACTTAACACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
59764656 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
59764696 TGCTCTTCGAGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
59764736 TGCTCTTCGGAACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
59764776 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
59764816 TGCTCTTCGGGGTTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
59764848 CTCAATTCTC
Statistics
Matches: 269, Mismatches: 41, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
39 1 0.00
40 267 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:59766389 original size:46 final size:46
Alignment explanation
Indices: 59766336--59766472 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
59766326 TATATATACA
* * * *
59766336 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
59766382 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
59766428 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTT-CCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTTACCACATAT
59766473 ATACATGTTC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 75 0.95
47 4 0.05
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:59766507 original size:47 final size:47
Alignment explanation
Indices: 59766446--59766637 Score: 269
Period size: 47 Copynumber: 4.1 Consensus size: 47
59766436 ACACATTTCG
* **
59766446 CATTAGCCATTCGGCCTT-TCCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT-CACATATACGCATGTTCACATTCATCA
* * * *
59766493 CATCGGCCCTTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
59766540 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
* *
59766587 CATTGGCCATTCGGCCTTATCACACATACGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
59766634 CATT
1 CATT
59766638 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
47 131 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCA
Found at i:59776024 original size:31 final size:30
Alignment explanation
Indices: 59775988--59776066 Score: 113
Period size: 31 Copynumber: 2.6 Consensus size: 30
59775978 TTTAACGGTT
* *
59775988 ACTGGGCTGAAGCGTTTTCATAAATCATATC
1 ACTGGGCCGAAGC-TTTTCATAAATCAGATC
*
59776019 ACTGGGCCAAAGCCTTTTCATAAATCAGATC
1 ACTGGGCCGAAG-CTTTTCATAAATCAGATC
59776050 ACTGGGCCGAAGCTTTT
1 ACTGGGCCGAAGCTTTT
59776067 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
30 5 0.12
31 37 0.86
32 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (30 bp):
ACTGGGCCGAAGCTTTTCATAAATCAGATC
Found at i:59776138 original size:42 final size:42
Alignment explanation
Indices: 59776090--59776181 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
59776080 TGGCCCTTAG
59776090 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
* *
59776132 TCCCATTTCAATATCACATGTAATGTCAATGAATGTATGTAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
59776174 GCCCATTT
1 GCCCATTT
59776182 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.34
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:59776357 original size:25 final size:25
Alignment explanation
Indices: 59776329--59776398 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
59776319 CTCTTTTAAT
59776329 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
59776354 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
59776379 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
59776399 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:59777356 original size:27 final size:27
Alignment explanation
Indices: 59777303--59777431 Score: 82
Period size: 27 Copynumber: 4.7 Consensus size: 27
59777293 TTTCATCCTA
* * * **
59777303 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTCTGTAAAC
59777330 CAAGGGTATTTTAGTAATTCTGTAAAC
1 CAAGGGTATTTTAGTAATTCTGTAAAC
* * *
59777357 CAATGGTATTTCTA-TAATT-TTTAGAAAGT
1 CAAGGGTATTT-TAGTAATTCTGT--AAA-C
* * * *
59777386 CAATGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTCTGTAAAC
* *
59777413 CAGGGGTATTTTGGTAATT
1 CAAGGGTATTTTAGTAATT
59777432 TTACAAATTG
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
26 2 0.02
27 54 0.65
28 9 0.11
29 16 0.19
30 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTCTGTAAAC
Found at i:59777432 original size:27 final size:27
Alignment explanation
Indices: 59777390--59777512 Score: 124
Period size: 27 Copynumber: 4.6 Consensus size: 27
59777380 GAAAGTCAAT
* **
59777390 GGTATTTTTGTAATTTTGTAAATCAGG
1 GGTATTTTGGTAATTTTACAAATCAGG
*
59777417 GGTATTTTGGTAATTTTACAAAT-TGAG
1 GGTATTTTGGTAATTTTACAAATCAG-G
*** * * *
59777444 GGTATTCCAGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAATCAGG
59777471 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTGGTAATTTTACAAATC-AGG
59777498 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
59777513 CTATCCTATA
Statistics
Matches: 77, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.03
27 74 0.96
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAATCAGG
Found at i:59777504 original size:81 final size:81
Alignment explanation
Indices: 59777389--59777545 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
59777379 AGAAAGTCAA
* ** * *
59777389 TGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTA-CAAATTGAGGGTATTCCA
1 TGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTATCAAATAG-GGGTATTCCA
59777453 GTAATTTCACAAACCAG
65 GTAATTTCACAAACCAG
** *
59777470 TGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTCTATCCTATAGGGGTATTTCA
1 TGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTCTATCAAATAGGGGTATTCCA
59777534 GTAATTTCACAA
65 GTAATTTCACAA
59777546 TCAAGGGTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 1 0.02
81 61 0.92
82 4 0.06
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (81 bp):
TGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTATCAAATAGGGGTATTCCAG
TAATTTCACAAACCAG
Found at i:59777511 original size:54 final size:54
Alignment explanation
Indices: 59777390--59777512 Score: 140
Period size: 54 Copynumber: 2.3 Consensus size: 54
59777380 GAAAGTCAAT
* *** * *
59777390 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATAGAG
** *
59777444 GGTATTCCAGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAG-G
1 GGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAA-TAGAG
*
59777498 GGTATTTTGGTAATT
1 GGTATTTTAGTAATT
59777513 CTATCCTATA
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
54 54 0.96
55 2 0.04
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.42
Consensus pattern (54 bp):
GGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATAGAG
Found at i:59777552 original size:27 final size:27
Alignment explanation
Indices: 59777443--59777552 Score: 71
Period size: 27 Copynumber: 4.1 Consensus size: 27
59777433 TACAAATTGA
* *
59777443 GGGTATTCCAGTAATTTCACAAACCAG
1 GGGTATTTCAGTAATTTCACAAACAAG
* ** * *
59777470 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTCAGTAATTTCACAAACAAG
** ** *
59777497 GGGTATTTTGGTAA-TTCTATCCTA-TAG
1 GGGTATTTCAGTAATTTC-A-CAAACAAG
*
59777524 GGGTATTTCAGTAATTTCACAATCAAG
1 GGGTATTTCAGTAATTTCACAAACAAG
59777551 GG
1 GG
59777553 TAAAACGCTA
Statistics
Matches: 63, Mismatches: 16, Indels: 8
0.72 0.18 0.09
Matches are distributed among these distances:
26 3 0.05
27 55 0.87
28 5 0.08
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTCACAAACAAG
Found at i:59777719 original size:80 final size:81
Alignment explanation
Indices: 59777544--59777737 Score: 230
Period size: 80 Copynumber: 2.4 Consensus size: 81
59777534 GTAATTTCAC
* * * * * *
59777544 AATCAAGGGTAAAACGCTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTTTAAATCAAGGGT
1 AATCAAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCAAGGGT
* *
59777608 AAAATAGTAATTCTGTA
65 AAAACAGTAATTCTATA
* *** *
59777625 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAA-TTTGTAAATTGCGGGTG
1 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
*
59777689 AAACGGTAATTCTATA
66 AAACAGTAATTCTATA
*
59777705 AATCAAGGGTAAAATGGTAATTCTACAAATCGA
1 AATCAAGGGTAAAATGGTAATTCTATAAATCGA
59777738 AGGCATTTCA
Statistics
Matches: 96, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
80 56 0.58
81 39 0.41
82 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTA
AAACAGTAATTCTATA
Found at i:59777724 original size:53 final size:53
Alignment explanation
Indices: 59777544--59777726 Score: 240
Period size: 54 Copynumber: 3.4 Consensus size: 53
59777534 GTAATTTCAC
* * * *
59777544 AATCAAGGGTAAAACGCTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTTTA
1 AATCAAGGGTAAAACGGTAA-TTTGTAAATTGAGGGTAAAATGGTAATTCTATA
** *
59777598 AATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCAAGGGTAAAACGGTAATT-TGTAAATTGAGGGTAAAATGGTAATTCTATA
* * * *
59777652 AATCGAGGGTAAAACGGTAATTTGTAAATTGCGGGTGAAACGGTAATTCTATA
1 AATCAAGGGTAAAACGGTAATTTGTAAATTGAGGGTAAAATGGTAATTCTATA
*
59777705 AATCAAGGGTAAAATGGTAATT
1 AATCAAGGGTAAAACGGTAATT
59777727 CTACAAATCG
Statistics
Matches: 112, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
53 49 0.44
54 63 0.56
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (53 bp):
AATCAAGGGTAAAACGGTAATTTGTAAATTGAGGGTAAAATGGTAATTCTATA
Found at i:59777727 original size:27 final size:27
Alignment explanation
Indices: 59777544--59777740 Score: 191
Period size: 27 Copynumber: 7.3 Consensus size: 27
59777534 GTAATTTCAC
* * * *
59777544 AATCAAGGGTAAAACGCTAATTTTGTA
1 AATCAAGGGTAAAATGGTAATTCTATA
* * *
59777571 AA-CTGAGGGTAAAATGGTAATTTTTTA
1 AATC-AAGGGTAAAATGGTAATTCTATA
* *
59777598 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCAAGGGTAAAATGGTAATTCTATA
*
59777625 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCAAGGGTAAAATGGTAATTCTATA
* * *
59777652 AATCGAGGGTAAAACGGTAATT-TGTA
1 AATCAAGGGTAAAATGGTAATTCTATA
*** * *
59777678 AATTGCGGGTGAAACGGTAATTCTATA
1 AATCAAGGGTAAAATGGTAATTCTATA
*
59777705 AATCAAGGGTAAAATGGTAATTCTACA
1 AATCAAGGGTAAAATGGTAATTCTATA
59777732 AATCGAAGG
1 AATC-AAGG
59777741 CATTTCAGTA
Statistics
Matches: 143, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
26 23 0.16
27 115 0.80
28 5 0.03
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
AATCAAGGGTAAAATGGTAATTCTATA
Found at i:59780028 original size:46 final size:46
Alignment explanation
Indices: 59779961--59780086 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
59779951 AACCCGCCCC
* * * *
59779961 TAAGTGAACTCGGAATCAACTCAACGAGCTCGGGCATTGGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
59780007 TAAGTGAACTCGGACTCAACTCAACGTGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
59780053 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
59780087 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:59782870 original size:46 final size:46
Alignment explanation
Indices: 59782820--59782992 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
59782810 TGGTTGAGCA
59782820 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
59782866 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-T-TGAAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
59782911 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
59782959 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
59782993 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 9, Indels: 22
0.78 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 5 0.05
44 1 0.01
45 1 0.01
46 59 0.55
47 27 0.25
48 1 0.01
49 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:59782976 original size:93 final size:93
Alignment explanation
Indices: 59782817--59782987 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
59782807 GGATGGTTGA
* * *
59782817 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59782882 TGAGTCCGAGTTCTTGAAATGTAACTAG
66 TGAGTCCGAGTTCTTGAAATGTAACTAG
*
59782910 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59782975 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
59782988 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCTTGAAATGTAACTAG
Found at i:59785170 original size:31 final size:31
Alignment explanation
Indices: 59785127--59785329 Score: 343
Period size: 31 Copynumber: 6.5 Consensus size: 31
59785117 TTTAACGGTT
* *
59785127 ACTGGGCTGAAGCGTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
59785158 ACTGGGCCGAAGCGTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
59785189 ACTGGGCCGAAGCCTTTTCATAAATCACATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
59785220 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
59785251 ACTGGGCCGAAGCCTTTTCATAAATTATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
59785282 ACTGGACCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
59785313 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
59785330 ACTGTAAACG
Statistics
Matches: 162, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 162 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:59786363 original size:27 final size:27
Alignment explanation
Indices: 59786333--59786424 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
59786323 ATTACCAAAG
* * **
59786333 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
59786360 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
59786387 TACCTTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
59786414 TACCCTCGATT
1 TACCCTCGATT
59786425 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:59786378 original size:54 final size:54
Alignment explanation
Indices: 59786320--59786424 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
59786310 CTCAACTTGT
* * * **
59786320 AAAATTACCAAAGTACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTAC
*** *
59786374 AAAATTACCATTTTACCTTCAATTTACAAAATTACCGTTTTACCCTCGATT
1 AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
59786425 GTGAAATTAC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTAC
Found at i:59786486 original size:27 final size:27
Alignment explanation
Indices: 59786456--59786663 Score: 145
Period size: 27 Copynumber: 7.7 Consensus size: 27
59786446 TGTAGGATAG
*
59786456 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
59786483 AATTACCAAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
59786510 AATTACCGAAATA-CCTTCAATTTGTAA
1 AATTACCAAAATACCCTT-AGTTTGTAA
* **
59786537 AATTACCAAAATACCCTGA-TTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
59786563 AATTA-TAGAAATACCCTTGGCTTTCTAAA
1 AATTACCA-AAATACCCTTAG-TTTGT-AA
* * * **
59786592 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTGTAA
* * *
59786619 AATTACTAAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
59786646 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
59786664 GTAGGATGAA
Statistics
Matches: 146, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
25 1 0.01
26 22 0.15
27 91 0.62
28 11 0.08
29 21 0.14
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:59786495 original size:54 final size:54
Alignment explanation
Indices: 59786414--59786553 Score: 135
Period size: 54 Copynumber: 2.6 Consensus size: 54
59786404 ATTACCGTTT
* * **
59786414 TACCCTCGA-TTGTGAAATTACTGAAATACCCTT-GTAGGAT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTAGG-TGA-AATTACCAAAA
* * ** *
59786467 TACCC-CTAGTTTGTAAAATTACCAAAATACCATTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGTAGGTGAAATTACCAAAA
*
59786521 TACCTTCAATTTGTAAAATTACCAAAATACCCT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCT
59786554 GATTTACAAA
Statistics
Matches: 70, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
52 1 0.01
53 5 0.07
54 59 0.84
55 5 0.07
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTAGGTGAAATTACCAAAA
Found at i:59786718 original size:27 final size:27
Alignment explanation
Indices: 59786686--59786737 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
59786676 AACTAAAATA
59786686 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
59786713 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
59786738 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:59787609 original size:25 final size:26
Alignment explanation
Indices: 59787569--59787638 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
59787559 AGGAAGTGCT
* * *
59787569 AAAAGGGCTCTACCCCAGTTTA-CCG
1 AAAAGGGCTTTGCCCCAGTTTATCAG
59787594 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTATCAG
59787620 AAAA-GGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
59787639 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 35 0.85
26 6 0.15
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCAGTTTATCAG
Found at i:59787650 original size:24 final size:24
Alignment explanation
Indices: 59787594--59787665 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
59787584 CAGTTTACCG
59787594 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
59787618 AGAAA-AGGCTTTGCCCCAGTTATT
1 A-AAAGAGGCTTTGCCCCAGTTATC
**
59787642 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
59787666 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 3 0.07
24 14 0.34
25 24 0.59
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:59787907 original size:31 final size:31
Alignment explanation
Indices: 59787858--59787940 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
59787848 TGCTTACAGT
* *
59787858 AAAGGCTTCG-GCCAGTGATTTGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
*
59787888 AAAGGCTTTGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
*
59787919 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGACCCAGTGATATG
59787941 TCGAGACTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 14 0.30
31 33 0.70
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGATATGATTTATGA
Found at i:59794716 original size:295 final size:295
Alignment explanation
Indices: 59794186--59794778 Score: 1186
Period size: 295 Copynumber: 2.0 Consensus size: 295
59794176 TTTGTGTGAT
59794186 TATCCGAGTGTCCTATCCAATTTCGAATGGTTCATCTGGAAAAGGTAAATTGAGTTCGAATGTGT
1 TATCCGAGTGTCCTATCCAATTTCGAATGGTTCATCTGGAAAAGGTAAATTGAGTTCGAATGTGT
59794251 AAAACAAGCTATATGCCAAGTATGAACTAGCTTGTTACTTACTTGAGGTAAGTTAAGAAAACACC
66 AAAACAAGCTATATGCCAAGTATGAACTAGCTTGTTACTTACTTGAGGTAAGTTAAGAAAACACC
59794316 TTGGCTATTTGTTACAAATCTTGTAAGATGCAAATAAAGAAAATATATGTATGTGATGTGTATTT
131 TTGGCTATTTGTTACAAATCTTGTAAGATGCAAATAAAGAAAATATATGTATGTGATGTGTATTT
59794381 GGCTTATTGAATGAGTAGTTAGTATGCCATGAATAACCCTTATATATGTGTATATATGATTTGGT
196 GGCTTATTGAATGAGTAGTTAGTATGCCATGAATAACCCTTATATATGTGTATATATGATTTGGT
59794446 ATATTTGGTTATATAATTAATATATGTATATGAAA
261 ATATTTGGTTATATAATTAATATATGTATATGAAA
59794481 TATCCGAGTGTCCTATCCAATTTCGAATGGTTCATCTGGAAAAGGTAAATTGAGTTCGAATGTGT
1 TATCCGAGTGTCCTATCCAATTTCGAATGGTTCATCTGGAAAAGGTAAATTGAGTTCGAATGTGT
59794546 AAAACAAGCTATATGCCAAGTATGAACTAGCTTGTTACTTACTTGAGGTAAGTTAAGAAAACACC
66 AAAACAAGCTATATGCCAAGTATGAACTAGCTTGTTACTTACTTGAGGTAAGTTAAGAAAACACC
59794611 TTGGCTATTTGTTACAAATCTTGTAAGATGCAAATAAAGAAAATATATGTATGTGATGTGTATTT
131 TTGGCTATTTGTTACAAATCTTGTAAGATGCAAATAAAGAAAATATATGTATGTGATGTGTATTT
59794676 GGCTTATTGAATGAGTAGTTAGTATGCCATGAATAACCCTTATATATGTGTATATATGATTTGGT
196 GGCTTATTGAATGAGTAGTTAGTATGCCATGAATAACCCTTATATATGTGTATATATGATTTGGT
59794741 ATATTTGGTTATATAATTAATATATGTATATGAAA
261 ATATTTGGTTATATAATTAATATATGTATATGAAA
59794776 TAT
1 TAT
59794779 TATTTCGATA
Statistics
Matches: 298, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
295 298 1.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.36
Consensus pattern (295 bp):
TATCCGAGTGTCCTATCCAATTTCGAATGGTTCATCTGGAAAAGGTAAATTGAGTTCGAATGTGT
AAAACAAGCTATATGCCAAGTATGAACTAGCTTGTTACTTACTTGAGGTAAGTTAAGAAAACACC
TTGGCTATTTGTTACAAATCTTGTAAGATGCAAATAAAGAAAATATATGTATGTGATGTGTATTT
GGCTTATTGAATGAGTAGTTAGTATGCCATGAATAACCCTTATATATGTGTATATATGATTTGGT
ATATTTGGTTATATAATTAATATATGTATATGAAA
Found at i:59795140 original size:55 final size:55
Alignment explanation
Indices: 59795056--59795166 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 55
59795046 GATACATGGA
* * *
59795056 AATGTATTATTGTATCTCATTTGTAGGTTTAAGGTTAAGCATTGGTGATGACAAT
1 AATGTATTATTATATATCATTTGCAGGTTTAAGGTTAAGCATTGGTGATGACAAT
59795111 AATGTATTATTATATATCATTTGCAGGTTTAAGGTTAAGCATTGGTGATGACAAT
1 AATGTATTATTATATATCATTTGCAGGTTTAAGGTTAAGCATTGGTGATGACAAT
59795166 A
1 A
59795167 TAATTCGTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.41
Consensus pattern (55 bp):
AATGTATTATTATATATCATTTGCAGGTTTAAGGTTAAGCATTGGTGATGACAAT
Found at i:59799216 original size:55 final size:55
Alignment explanation
Indices: 59799115--59799256 Score: 142
Period size: 55 Copynumber: 2.6 Consensus size: 55
59799105 CGACATGGCC
* * * * *
59799115 GTGGTTGAACCTGCCAAAACAACACGGGCGTGAGACACGCCGGTGTGGAAGAACA
1 GTGGTCGAACCTGTCAAAATAACACGGGTGTGAGACACGCCGGTGTGGAACAACA
* * * ** * * *
59799170 GTGGGT-GAACCTGTTAAAATAGCACGGGTGTGCGACACGCTTGTGTGTAACACCC
1 GT-GGTCGAACCTGTCAAAATAACACGGGTGTGAGACACGCCGGTGTGGAACAACA
*
59799225 GTGGTCGAACCTGTCAAATTAACACGGGTGTG
1 GTGGTCGAACCTGTCAAAATAACACGGGTGTG
59799257 GGGCTTTAAT
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
54 3 0.04
55 64 0.91
56 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.32, T:0.20
Consensus pattern (55 bp):
GTGGTCGAACCTGTCAAAATAACACGGGTGTGAGACACGCCGGTGTGGAACAACA
Found at i:59806026 original size:28 final size:27
Alignment explanation
Indices: 59805929--59806033 Score: 120
Period size: 28 Copynumber: 3.7 Consensus size: 27
59805919 TATATATGAC
* *
59805929 CCATTAGGCCCAATCCCTTTCATATGG
1 CCATTAGGCCCAATCACATTCATATGG
* * *
59805956 CCCATTAGGCCCATTCACATTTATGTGG
1 -CCATTAGGCCCAATCACATTCATATGG
*
59805984 CCTATTAGGCCCAAATCACATTCATTTGG
1 CC-ATTAGGCCC-AATCACATTCATATGG
59806013 CCATTAGGCCCAAATCACATT
1 CCATTAGGCCC-AATCACATT
59806034 TACAGTCATG
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 2 0.03
28 50 0.75
29 15 0.22
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (27 bp):
CCATTAGGCCCAATCACATTCATATGG
Found at i:59807634 original size:79 final size:79
Alignment explanation
Indices: 59807490--59807746 Score: 263
Period size: 79 Copynumber: 3.3 Consensus size: 79
59807480 AAATCACGTA
* * ** * *
59807490 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATA
1 CCTTCGGAACTTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATATA
59807553 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
59807569 CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA-ATTAG
1 CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATA-TAG
*
59807633 TATCTCGCACAAATG
65 TAACTCGCACAAATG
* * * * * * * *
59807648 CCTTCGG-GCTTAGCCCGAAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGG
1 CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGATATAG
* *
59807712 TCACTTAGCACAAA-G
65 TAAC-TCGCACAAATG
* *
59807727 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGAACTTAACCCGGA
59807747 CATCATTCAA
Statistics
Matches: 151, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 35 0.23
79 69 0.46
80 47 0.31
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:59807640 original size:39 final size:39
Alignment explanation
Indices: 59807523--59807746 Score: 247
Period size: 39 Copynumber: 5.6 Consensus size: 39
59807513 GCTACTCGTT
* *
59807523 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* * *
59807563 CAAATGCCTTCGGAACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAATTAGTAACTCGCA
*
59807603 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* *
59807642 CAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
59807681 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
59807722 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
59807747 CATCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 75 0.47
40 75 0.47
41 10 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:59807746 original size:40 final size:40
Alignment explanation
Indices: 59807504--59807746 Score: 229
Period size: 40 Copynumber: 6.1 Consensus size: 40
59807494 CGGAATTTAA
** *
59807504 CCGGATATAGCTAC-TCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TACTTCGCACAAATGCCTTCGGGACTTAGC
* * *
59807544 CCGGTTATAGTAAC-TCGCACAAATGCCTTCGGAACTTAAC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
*
59807584 CCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
59807623 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGACTTAGC
* *
59807662 CC-GAAATTAGTA-TCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGA-CTTAGC
* *
59807702 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
59807742 CCGGA
1 CCGGA
59807747 CATCATTCAA
Statistics
Matches: 176, Mismatches: 16, Indels: 22
0.82 0.07 0.10
Matches are distributed among these distances:
38 5 0.03
39 67 0.38
40 88 0.50
41 15 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
Found at i:59814943 original size:39 final size:40
Alignment explanation
Indices: 59814821--59815044 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
59814811 GCTACTCGTT
* *
59814821 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
59814861 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
59814901 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
59814940 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
59814979 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
59815020 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59815045 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 72 0.44
40 77 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:59814988 original size:78 final size:80
Alignment explanation
Indices: 59814821--59815044 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 80
59814811 GCTACTCGTT
*
59814821 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
59814886 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * * *
59814901 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGTACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
59814963 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * * *
59814979 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
59815042 GGA
64 GGA
59815045 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.02
78 34 0.27
79 56 0.45
80 33 0.26
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:59815004 original size:118 final size:120
Alignment explanation
Indices: 59814815--59815044 Score: 308
Period size: 118 Copynumber: 1.9 Consensus size: 120
59814805 GATATAGCTA
* *
59814815 CTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA
1 CTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
* *
59814880 ACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAT
66 ACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTAT
* *
59814934 CTCGTACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCT
1 CTCGTACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CT
** * *
59814996 TAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 TAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
59815045 CATCATTCAA
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 55 0.57
119 38 0.39
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (120 bp):
CTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
ACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAT
Found at i:59816067 original size:16 final size:16
Alignment explanation
Indices: 59816046--59816091 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
59816036 CAAACTTTCA
*
59816046 GCTTTTCCGCATTTTG
1 GCTTTTCTGCATTTTG
59816062 GCTTTTCTGCATTTTG
1 GCTTTTCTGCATTTTG
59816078 GCTTTTCTGCATTT
1 GCTTTTCTGCATTT
59816092 CAGCTTTTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.07, C:0.22, G:0.17, T:0.54
Consensus pattern (16 bp):
GCTTTTCTGCATTTTG
Found at i:59816107 original size:16 final size:16
Alignment explanation
Indices: 59816041--59816100 Score: 75
Period size: 16 Copynumber: 3.8 Consensus size: 16
59816031 GTAGCCAAAC
*
59816041 TTTCAGCTTTTCCGCA
1 TTTCAGCTTTTCTGCA
**
59816057 TTTTGGCTTTTCTGCA
1 TTTCAGCTTTTCTGCA
**
59816073 TTTTGGCTTTTCTGCA
1 TTTCAGCTTTTCTGCA
59816089 TTTCAGCTTTTC
1 TTTCAGCTTTTC
59816101 GCGATTTGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.08, C:0.23, G:0.15, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTCTGCA
Found at i:59823614 original size:28 final size:28
Alignment explanation
Indices: 59823544--59823627 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
59823534 ACCTATATAT
* *
59823544 ATATGGCCTACTAGGCCC-AATCTCTTTC
1 ATATGGCC-ACTAGGCCCAAATCACATTC
* *
59823572 ATATGACCCATTAGGCCCAAATCACATTC
1 ATATG-GCCACTAGGCCCAAATCACATTC
*
59823601 ATTTGGCCACTAGGCCCAAATCACATT
1 ATATGGCCACTAGGCCCAAATCACATT
59823628 TACAGTCATG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
28 33 0.70
29 14 0.30
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (28 bp):
ATATGGCCACTAGGCCCAAATCACATTC
Found at i:59823723 original size:18 final size:19
Alignment explanation
Indices: 59823700--59823736 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
59823690 TGTGCCCAAC
59823700 AGCCCA-TCGGGCCTGTTT
1 AGCCCATTCGGGCCTGTTT
*
59823718 AGCCCATTCTGGCCTGTTT
1 AGCCCATTCGGGCCTGTTT
59823737 GGCCAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.11, C:0.32, G:0.24, T:0.32
Consensus pattern (19 bp):
AGCCCATTCGGGCCTGTTT
Found at i:59823745 original size:19 final size:19
Alignment explanation
Indices: 59823709--59823745 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
59823699 CAGCCCATCG
*
59823709 GGCCTGTTTAGCCCATTCT
1 GGCCTGTTTAGCCAATTCT
*
59823728 GGCCTGTTTGGCCAATTC
1 GGCCTGTTTAGCCAATTC
59823746 ATAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.30, G:0.24, T:0.35
Consensus pattern (19 bp):
GGCCTGTTTAGCCAATTCT
Found at i:59827072 original size:15 final size:16
Alignment explanation
Indices: 59827054--59827087 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
59827044 AGATTAAATT
59827054 AATTAA-CTAAATGCA
1 AATTAACCTAAATGCA
59827069 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
59827085 AAT
1 AAT
59827088 GAGATGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:59843617 original size:19 final size:18
Alignment explanation
Indices: 59843593--59843628 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
59843583 AAAAAACTGT
59843593 GCGTGTTAACGCTATGTGA
1 GCGTGTTAACGCT-TGTGA
*
59843612 GCGTGTTCACGCTTGTG
1 GCGTGTTAACGCTTGTG
59843629 TTGATCTCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.14, C:0.19, G:0.33, T:0.33
Consensus pattern (18 bp):
GCGTGTTAACGCTTGTGA
Found at i:59843993 original size:17 final size:19
Alignment explanation
Indices: 59843971--59844007 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
59843961 TTGGGCTTAT
59843971 TGGG-CCACATGGG-CGTG
1 TGGGCCCACATGGGCCGTG
*
59843988 TGGGCCCTCATGGGCCGTG
1 TGGGCCCACATGGGCCGTG
59844007 T
1 T
59844008 TATGGGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.08, C:0.27, G:0.43, T:0.22
Consensus pattern (19 bp):
TGGGCCCACATGGGCCGTG
Found at i:59844505 original size:22 final size:22
Alignment explanation
Indices: 59844477--59844518 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
59844467 TATTATTGTA
59844477 ATGGGCTAAGGCCCACACTGAT
1 ATGGGCTAAGGCCCACACTGAT
* *
59844499 ATGGGCTTAGGCCCAGACTG
1 ATGGGCTAAGGCCCACACTG
59844519 CTTTGCACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.26, G:0.31, T:0.19
Consensus pattern (22 bp):
ATGGGCTAAGGCCCACACTGAT
Found at i:59859336 original size:30 final size:29
Alignment explanation
Indices: 59859287--59859344 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
59859277 GAAGTATTTT
* *
59859287 TAAAAATTGGTTGCTCTTTTTGTAAATAA
1 TAAAAATTAGATGCTCTTTTTGTAAATAA
59859316 TAAAAATTAGATGCCTCTTTTTGTAAATA
1 TAAAAATTAGATG-CTCTTTTTGTAAATA
59859345 TTTTCAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (29 bp):
TAAAAATTAGATGCTCTTTTTGTAAATAA
Found at i:59861146 original size:93 final size:93
Alignment explanation
Indices: 59861034--59861206 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
59861024 CGCTCATAAG
** * *
59861034 CGAACTCGGACTCAACTCAACGA-TCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGT-TAAGACATTCGCATCCATAAGTGAACTCAGACTCAACTC
59861098 AACGAGCTCCGATGCCTAGTTACATCTCT
65 AACGAGCTCCGATGCCTAGTTACATCTCT
59861127 CGAACTCGGACTCAACTCAACGAGTTAAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTAAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
* *
59861192 ACGAGTTCGGATGCC
66 ACGAGCTCCGATGCC
59861207 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTAAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCCGATGCCTAGTTACATCTCT
Found at i:59861196 original size:46 final size:45
Alignment explanation
Indices: 59861028--59861199 Score: 143
Period size: 46 Copynumber: 3.7 Consensus size: 45
59861018 GTAACCCGCT
* * * *
59861028 CATAAGCGAACTCGGACTCAACTCAACGA-TCTCGGGCGTTCGCATC
1 CATAAGTGAACTCAGACTCAACTCAACGAGT-TC-AGCATTCGCATC
* * * *
59861074 CATAAGTGAACTCAGACTCAACTCAACGAGCTCCG-ATGC-CTAGTTA
1 CATAAGTGAACTCAGACTCAACTCAACGAGTTCAGCATTCGC-A--TC
*** * *
59861120 CATCTCTCGAACTCGGACTCAACTCAACGAGTTAAGACATTCGCATC
1 CATAAGT-GAACTCAGACTCAACTCAACGAGTTCAG-CATTCGCATC
59861167 CATAAGTGAACTCAGACTCAACTCAACGAGTTC
1 CATAAGTGAACTCAGACTCAACTCAACGAGTTC
59861200 GGATGCCCAA
Statistics
Matches: 97, Mismatches: 21, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 58 0.60
47 29 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (45 bp):
CATAAGTGAACTCAGACTCAACTCAACGAGTTCAGCATTCGCATC
Found at i:59861839 original size:115 final size:115
Alignment explanation
Indices: 59861637--59861862 Score: 434
Period size: 115 Copynumber: 2.0 Consensus size: 115
59861627 TTTGGAAAAA
59861637 TTACAATTTTGCCCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTT
1 TTACAATTTTGCCCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTT
59861702 CAGCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTCCCTTATAT
66 CAGCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTCCCTTATAT
* *
59861752 TTACACTTTTGCCCCTAAACTTTTGCATATTTACACTTTTTCCCCAAAGCTCGTAAATTAAACTT
1 TTACAATTTTGCCCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTT
59861817 CAGCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTCCCTT
66 CAGCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTCCCTT
59861863 CTATGGCAAC
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
115 109 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.44
Consensus pattern (115 bp):
TTACAATTTTGCCCCTAAACTTTTGCATATTTACACTTTTGCCCCAAAGCTCGTAAATTAAACTT
CAGCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTCCCTTATAT
Found at i:59863746 original size:30 final size:30
Alignment explanation
Indices: 59863702--59863790 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
59863692 CAAAGATAAC
59863702 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
59863731 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
59863761 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
59863791 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:59863750 original size:15 final size:15
Alignment explanation
Indices: 59863702--59863781 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
59863692 CAAAGATAAC
*
59863702 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
59863716 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
59863731 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
59863746 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
59863761 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
59863776 AAGAAA
1 AAGAAA
59863782 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:59863790 original size:15 final size:15
Alignment explanation
Indices: 59863713--59863790 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
59863703 AGAAAACCGA
59863713 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
59863728 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
59863742 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
59863757 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
59863773 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
59863788 ATA
1 ATA
59863791 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:59866769 original size:46 final size:46
Alignment explanation
Indices: 59866702--59866871 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
59866692 TGTAACCCGC
59866702 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
*
59866748 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCACAT
* * * *
59866798 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
* * **
59866841 CCTTAAGTGAACTTAGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
59866872 TACTGATGCC
Statistics
Matches: 104, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
46 56 0.54
47 26 0.25
48 1 0.01
49 1 0.01
50 7 0.07
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT
Found at i:59873304 original size:29 final size:29
Alignment explanation
Indices: 59873258--59873404 Score: 133
Period size: 29 Copynumber: 5.1 Consensus size: 29
59873248 GTGAGCATGA
* *
59873258 ATAT-AAGGTGATTTGGGCCTAACAGGCC
1 ATATAAAGGTGAATTGGGCCTAACGGGCC
*
59873286 ATATAAAGGTG-ATTAGGGCCTAATGGGCC
1 ATATAAAGGTGAATT-GGGCCTAACGGGCC
* ** * *
59873315 ATATGAATATGAATTGGGCCTGATGGGCC
1 ATATAAAGGTGAATTGGGCCTAACGGGCC
* *
59873344 ATATGAATGTGAATTGGGCCTAACGGGCC
1 ATATAAAGGTGAATTGGGCCTAACGGGCC
*
59873373 ATATAAA--TGAGATTGGG-CTAAGTGGGCC
1 ATATAAAGGTGA-ATTGGGCCTAA-CGGGCC
59873401 ATAT
1 ATAT
59873405 GCATGTATGT
Statistics
Matches: 102, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
27 7 0.07
28 21 0.21
29 71 0.70
30 3 0.03
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (29 bp):
ATATAAAGGTGAATTGGGCCTAACGGGCC
Found at i:59873405 original size:57 final size:58
Alignment explanation
Indices: 59873270--59873418 Score: 164
Period size: 58 Copynumber: 2.6 Consensus size: 58
59873260 ATAAGGTGAT
** * * *
59873270 TTGGGCCTAACAGGCCATATAAAGGTGATTAGGGCCTAATGGGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATGTGATTAGGGCCTAACGGGCCATATGAATATGAA
*
59873328 TTGGGCCTGATGGGCCATATGAATGTGAATT-GGGCCTAACGGGCCATAT-AA-ATGAGA
1 TTGGGCCTAATGGGCCATATGAATGTG-ATTAGGGCCTAACGGGCCATATGAATATGA-A
*
59873385 TTGGG-CTAAGTGGGCCATATGCATGT-ATGTAGGG
1 TTGGGCCTAA-TGGGCCATATGAATGTGAT-TAGGG
59873419 GTTTTGGGCC
Statistics
Matches: 78, Mismatches: 8, Indels: 11
0.80 0.08 0.11
Matches are distributed among these distances:
55 2 0.03
56 8 0.10
57 26 0.33
58 39 0.50
59 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.26
Consensus pattern (58 bp):
TTGGGCCTAATGGGCCATATGAATGTGATTAGGGCCTAACGGGCCATATGAATATGAA
Found at i:59882614 original size:29 final size:29
Alignment explanation
Indices: 59882579--59882718 Score: 149
Period size: 29 Copynumber: 4.9 Consensus size: 29
59882569 TGAATATAAG
* *
59882579 GTGATTTGGGCCTAATGGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* *
59882608 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* * *
59882637 ATGAATTGGGCCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* **
59882666 GTGAATTGGGCCTGACAGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* *
59882695 GAG-ATTGGGCCGT-GTGGGCCATAT
1 GTGAATTGGGCC-TAATGGGCCATAT
59882719 GCATGTATGT
Statistics
Matches: 97, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
28 16 0.16
29 81 0.84
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATAAAT
Done.