Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 188 of 316
Found at i:60623909 original size:43 final size:43
Alignment explanation
Indices: 60623752--60623910 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
60623742 ATATGTGTTT
* * * *
60623752 CGTGTAAAACCACGTCTAGGACGTTGGCATCGACATATGATTTA
1 CGTGTAAGACCACGTCTAGGACATTGGCATCGATATTTGA-TTA
* * * * *
60623796 GGTGTAAGACCATGTCT-GGCACATCGACATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTAGG-ACATTGGCATCGATATTTGATTA
* * * *
60623838 TGTGTAAGACC-CTGTCTGGGATAATGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGACATTGGCATCGATATTTGATTA
* *
60623881 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACATTGGCAT
60623911 TGTATGAGCT
Statistics
Matches: 88, Mismatches: 22, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
42 24 0.27
43 40 0.45
44 24 0.27
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACATTGGCATCGATATTTGATTA
Found at i:60634171 original size:31 final size:31
Alignment explanation
Indices: 60634119--60634180 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
60634109 ATTACATTGT
* *
60634119 TGGTTTTAATTACGGCGATTGGATGTGAATA
1 TGGTCTTAATTACGGCCATTGGATGTGAATA
*
60634150 TGGTCTTAATTATGGCCATTGGATGTGAATA
1 TGGTCTTAATTACGGCCATTGGATGTGAATA
60634181 AAATAGAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.26, C:0.08, G:0.27, T:0.39
Consensus pattern (31 bp):
TGGTCTTAATTACGGCCATTGGATGTGAATA
Found at i:60638617 original size:40 final size:40
Alignment explanation
Indices: 60638565--60638836 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
60638555 ATAACCACAA
* * * *
60638565 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
60638605 GCACGAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
60638645 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
60638685 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
*
60638727 GCACAAATGCCTTCGGGTCTTAGCTCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
60638767 GCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
60638807 GCACAAATGCGTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
60638837 GTATTCAAAT
Statistics
Matches: 212, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
40 173 0.82
42 39 0.18
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:60638757 original size:122 final size:122
Alignment explanation
Indices: 60638565--60638844 Score: 431
Period size: 122 Copynumber: 2.3 Consensus size: 122
60638555 ATAACCACAA
* * * *
60638565 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* * *
60638628 CCCGGATAAATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATAAATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTC
60638685 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* * *
60638750 CTCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTT
66 CCCGGATAAATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTC
* *
60638807 GCACAAATGCGTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
60638845 ATGCTCATGC
Statistics
Matches: 146, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
120 30 0.21
121 5 0.03
122 111 0.76
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATAAATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTC
Found at i:60641076 original size:37 final size:37
Alignment explanation
Indices: 60641033--60641106 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
60641023 AAAATTGTTT
60641033 AAAAATATTAAATATCATGTTATATTTGATAAATTAA
1 AAAAATATTAAATATCATGTTATATTTGATAAATTAA
60641070 AAAAATATTAAATATCATGTTATATTTGATAAATTAA
1 AAAAATATTAAATATCATGTTATATTTGATAAATTAA
60641107 CTTGCTGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (37 bp):
AAAAATATTAAATATCATGTTATATTTGATAAATTAA
Found at i:60641498 original size:30 final size:30
Alignment explanation
Indices: 60641463--60641525 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
60641453 ACACTGTTTC
60641463 CATTTACTGAAAGTATGTGATTAGTGAGGA
1 CATTTACTGAAAGTATGTGATTAGTGAGGA
*
60641493 CATTTACTGAAAGTATGTGATTTGTGAGGA
1 CATTTACTGAAAGTATGTGATTAGTGAGGA
60641523 CAT
1 CAT
60641526 GCTCAGAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.35
Consensus pattern (30 bp):
CATTTACTGAAAGTATGTGATTAGTGAGGA
Found at i:60644409 original size:28 final size:28
Alignment explanation
Indices: 60644377--60644430 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
60644367 TGAAATCAAC
60644377 CACATGCTTCTTAACATATATTCTAAAT
1 CACATGCTTCTTAACATATATTCTAAAT
60644405 CACATGCTTCTTAACATATATTCTAA
1 CACATGCTTCTTAACATATATTCTAA
60644431 CACCTGAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (28 bp):
CACATGCTTCTTAACATATATTCTAAAT
Found at i:60646928 original size:42 final size:43
Alignment explanation
Indices: 60646828--60646966 Score: 133
Period size: 43 Copynumber: 3.3 Consensus size: 43
60646818 CTGAGATATC
* *
60646828 GTGTAAGACCGTGTCTGGGACATAGGCCTC-GATTGATATTTAT
1 GTGTAAGACCATGTCTGGGACATAGGCATCAGATTGA-ATTTAT
* * *
60646871 GTATAAGACCATGTCTGGGACATCGGCATCATATCTG-ATTT-T
1 GTGTAAGACCATGTCTGGGACATAGGCATCAGAT-TGAATTTAT
* * * *
60646913 GTGTAAGACCCTGTCTGGGACAGAGGCATCAATATTGAA-TTAC
1 GTGTAAGACCATGTCTGGGACATAGGCATC-AGATTGAATTTAT
*
60646956 ATGTAAGACCA
1 GTGTAAGACCA
60646967 CGTCAAAGAC
Statistics
Matches: 79, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
42 31 0.39
43 44 0.56
44 2 0.03
45 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATAGGCATCAGATTGAATTTAT
Found at i:60653381 original size:42 final size:43
Alignment explanation
Indices: 60653276--60653413 Score: 122
Period size: 43 Copynumber: 3.2 Consensus size: 43
60653266 TGAGATATCG
* * ** *
60653276 TGTAAGACCATGTCTGGGACACAACCCTC-A-ATTGATATTTACA
1 TGTAAGACCATGTCTCGGACAGAGGCATCGATATTGA-ATTT-CA
* * **
60653319 TATAAGACCATGTCTGGGACATTGGCATCG-TATTTG-ATTTCA
1 TGTAAGACCATGTCTCGGACAGAGGCATCGATA-TTGAATTTCA
* *
60653361 TGTAAGACCCTGTCTCGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTCGGACAGAGGCATCGATATTGAATTTCA
60653404 TGTAAGACCA
1 TGTAAGACCA
60653414 CGTCAGGGAC
Statistics
Matches: 77, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.39
43 43 0.56
44 1 0.01
45 3 0.04
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTCGGACAGAGGCATCGATATTGAATTTCA
Found at i:60654352 original size:6 final size:6
Alignment explanation
Indices: 60654322--60654452 Score: 90
Period size: 6 Copynumber: 21.3 Consensus size: 6
60654312 AAGAAACATT
* *
60654322 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
60654369 GTGACAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
60654420 ATCAGT ATTAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
60654453 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 5 0.05
6 80 0.83
7 8 0.08
8 3 0.03
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:60654381 original size:31 final size:31
Alignment explanation
Indices: 60654343--60654452 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
60654333 AATCAAAATG
*
60654343 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATTAGGTGAC
60654374 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATTAGGTGAC
* * *
60654405 AGAATTAGAATCAGAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATTAGGTGAC
*
60654436 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
60654453 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATTAGGTGAC
Found at i:60654711 original size:27 final size:26
Alignment explanation
Indices: 60654670--60654720 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
60654660 CGAGGCTGCC
*
60654670 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
*
60654696 AGATATATGTGGCGAAGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
60654721 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:60655086 original size:27 final size:27
Alignment explanation
Indices: 60654947--60655080 Score: 178
Period size: 27 Copynumber: 5.0 Consensus size: 27
60654937 GGGATAAAAT
* * *
60654947 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
60654974 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
60655001 GGTATTTCTACCTTATAAGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
60655028 GGTGATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
60655055 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
60655081 TAGTAAATCG
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:60655104 original size:27 final size:27
Alignment explanation
Indices: 60655077--60655177 Score: 148
Period size: 27 Copynumber: 3.7 Consensus size: 27
60655067 CTACAGGGGT
60655077 ATTTTAGTAAATCGAGGGTAAAACGGTA
1 ATTTT-GTAAATCGAGGGTAAAACGGTA
* * * *
60655105 AATCTATAAATCGAGGGTAAAACGATA
1 ATTTTGTAAATCGAGGGTAAAACGGTA
60655132 ATTTTGTAAATCGAGGGTAAAACGGTA
1 ATTTTGTAAATCGAGGGTAAAACGGTA
*
60655159 ATTTTGTAAATCAAGGGTA
1 ATTTTGTAAATCGAGGGTA
60655178 CTTTGGTAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
27 61 0.95
28 3 0.05
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
ATTTTGTAAATCGAGGGTAAAACGGTA
Found at i:60655185 original size:27 final size:26
Alignment explanation
Indices: 60655130--60655217 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 26
60655120 GGTAAAACGA
* ***
60655130 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTTTGTAAATCAAGGGT-ATTTGG
60655157 TAATTTTGTAAATCAAGGGTACTTTGG
1 TAATTTTGTAAATCAAGGGTA-TTTGG
** * *
60655184 TAATTTTACAAGTCAAGGGTATTTCAG
1 TAATTTTGTAAATCAAGGGTATTT-GG
60655211 TAATTTT
1 TAATTTT
60655218 ATAGGTCGAG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.08
27 47 0.92
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (26 bp):
TAATTTTGTAAATCAAGGGTATTTGG
Found at i:60655218 original size:27 final size:27
Alignment explanation
Indices: 60655169--60655248 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
60655159 ATTTTGTAAA
*
60655169 TCAAGGGTACTTT-GGTAATTTTACAAG
1 TCAAGGGTA-TTTCAGTAATTTTACAAG
* *
60655196 TCAAGGGTATTTCAGTAATTTTATAGG
1 TCAAGGGTATTTCAGTAATTTTACAAG
* *
60655223 TCGAGGGTATTTCAGTAATTTCACAA
1 TCAAGGGTATTTCAGTAATTTTACAA
60655249 ATCAGAGGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 3 0.07
27 42 0.93
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
TCAAGGGTATTTCAGTAATTTTACAAG
Found at i:60655274 original size:26 final size:27
Alignment explanation
Indices: 60655258--60655326 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
60655248 AATCAGAGGT
60655258 TTTTGGTAAATTTACAAACTAGGGGTA
1 TTTTGGTAAATTTACAAACTAGGGGTA
*
60655285 TTTTGGTAATTTTACAAACTAGGGGTA
1 TTTTGGTAAATTTACAAACTAGGGGTA
*
60655312 TTTTGGTAATTTTAC
1 TTTTGGTAAATTTAC
60655327 CCTACAGGGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.43
Consensus pattern (27 bp):
TTTTGGTAAATTTACAAACTAGGGGTA
Found at i:60655335 original size:27 final size:27
Alignment explanation
Indices: 60655258--60655368 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 27
60655248 AATCAGAGGT
* *
60655258 TTTTGGTAAATTTA-CAAACTAGGGGTA
1 TTTTGGTAATTTTACCATAC-AGGGGTA
*
60655285 TTTTGGTAATTTTA-CAAACTAGGGGTA
1 TTTTGGTAATTTTACCATAC-AGGGGTA
* *
60655312 TTTTGGTAATTTTACCCTACAGGGGCA
1 TTTTGGTAATTTTACCATACAGGGGTA
** * * *
60655339 TTTCAGTAATTCTACCTTACAAGGGTA
1 TTTTGGTAATTTTACCATACAGGGGTA
60655366 TTT
1 TTT
60655369 CAGTAATGCT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 70 0.96
28 3 0.04
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.40
Consensus pattern (27 bp):
TTTTGGTAATTTTACCATACAGGGGTA
Found at i:60655348 original size:54 final size:53
Alignment explanation
Indices: 60655231--60655349 Score: 125
Period size: 54 Copynumber: 2.2 Consensus size: 53
60655221 GGTCGAGGGT
*
60655231 ATTTCAGTAATTTCACAAATCAGAGGTTTTTGGTAAATTTACAAACTAGGGGT
1 ATTTCAGTAATTTCACAAATCAGAGGTTTTTGGTAAATTTACAAACTAGGGGC
** * * * **
60655284 ATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACCCTAC-AGGGGC
1 ATTTCAGTAATTTCACAAATC-AGAGGT-TTTTGGTAAATTTA-CAAACTAGGGGC
60655338 ATTTCAGTAATT
1 ATTTCAGTAATT
60655350 CTACCTTACA
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
52 1 0.02
53 21 0.40
54 28 0.53
55 3 0.06
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (53 bp):
ATTTCAGTAATTTCACAAATCAGAGGTTTTTGGTAAATTTACAAACTAGGGGC
Found at i:60655369 original size:27 final size:27
Alignment explanation
Indices: 60655307--60655375 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
60655297 TACAAACTAG
** * *
60655307 GGGTATTTTGGTAATTTTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAA
* *
60655334 GGGCATTTCAGTAATTCTACCTTACAA
1 GGGTATTTCAGTAATTCTACCCTACAA
60655361 GGGTATTTCAGTAAT
1 GGGTATTTCAGTAAT
60655376 GCTAGCCTGC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAA
Found at i:60659950 original size:144 final size:142
Alignment explanation
Indices: 60659676--60659991 Score: 447
Period size: 144 Copynumber: 2.2 Consensus size: 142
60659666 TGAATTGCCA
* * * * *
60659676 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGACCGATGCCTGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCGCACATATCAAGACCGATGCCTGTCCCAGACAT
* *
60659741 GGTCTTACACTAGCTCTCATCTTAATGCTGATGCCATGTCCCAAACATGGCCTTAGACTGACTCT
66 GGTCTTACACTAGATCTCA-CTTAATGCTGATGCCATGTCCCAAACATGGCCTTACACTGACTCT
60659806 CATATCGTGGCCG
130 CATATCGTGGCCG
* *
60659819 ATGCCATGTCCCAGACATGGTCTTACATTGGCGCACATATCAATG-TCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCGCACATATCAA-GACCGATGCC-TGTCCCAGAC
* * * *
60659883 ATGGTCTTACACTAGATCTCA-TTACATTGCTGATGCCATGTTCTAAACATGGTCTTACACTGGC
64 ATGGTCTTACACTAGATCTCACTTA-A-TGCTGATGCCATGTCCCAAACATGGCCTTACACTGAC
60659947 TCTCATATCGTGGCCG
127 TCTCATATCGTGGCCG
*
60659963 ATGCCATGTCCCAGACATGGTTTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
60659992 AACACACATA
Statistics
Matches: 154, Mismatches: 15, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
142 3 0.02
143 45 0.29
144 106 0.69
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (142 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCGCACATATCAAGACCGATGCCTGTCCCAGACAT
GGTCTTACACTAGATCTCACTTAATGCTGATGCCATGTCCCAAACATGGCCTTACACTGACTCTC
ATATCGTGGCCG
Found at i:60660003 original size:48 final size:48
Alignment explanation
Indices: 60659676--60659991 Score: 318
Period size: 48 Copynumber: 6.6 Consensus size: 48
60659666 TGAATTGCCA
* * * * *
60659676 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGA-GACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGGCCG
* * * *
60659724 ATGCC-TGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAAT-GCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCATGGCCG
* * * * *
60659771 ATGCCATGTCCCAAACATGGCCTTAGACTGACTCTCATATCGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCCG
* * * *
60659819 ATGCCATGTCCCAGACATGGTCTTACATTGGCGCACATATCAAT-GTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGGCCG
* * * *
60659867 ATGCCATGTCCCAGACATGGTCTTACACTAGATCTCAT-TACATTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-CATGGCCG
* * * *
60659915 ATGCCATGTTCTAAACATGGTCTTACACTGGCTCTCATATCGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCCG
*
60659963 ATGCCATGTCCCAGACATGGTTTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
60659992 AACACACATA
Statistics
Matches: 215, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
47 41 0.19
48 172 0.80
49 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGCCG
Found at i:60661239 original size:48 final size:48
Alignment explanation
Indices: 60661187--60661505 Score: 243
Period size: 48 Copynumber: 6.6 Consensus size: 48
60661177 TGTCGAGACT
* *
60661187 GATGCCATGTCCCAGACATGGTCTTACATTATCTCTCATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTATCTCTCATATCAATGCC
* * * * * *
60661235 GATGCCATGTCCCAGAGATGGTTTTATATTATCTCTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTATCTCTCATATCAATGCC
* * ** * * *
60661283 GATGCCATGTCCTACACATGGTCTTACACTGGCTCCCATATC-GTGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTATCTCTCATATCAAT-GCC
* * * *
60661331 GATGCTATGTCCCAAACATGGTCTTACACTAGT-GCACATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTA-TCTCTCATATCAATGCC
* ** * * **
60661379 GATGCCATGTCCCAGATATGGTCTTACACTGGCTCTTAT-TACATTGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTATCTCTCATAT-CAATGCC
* * * * *
60661427 GATGTCATGTTCCAAACATGGTCTTACACTAGT-TCTCATGTC-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTA-TCTCTCATATCAAT-GCC
** * *
60661475 GATGCCATGTCTTAGACATAGTCTGACACTA
1 GATGCCATGTCCCAGACATGGTCTTACACTA
60661506 GCACATATAT
Statistics
Matches: 209, Mismatches: 54, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
47 3 0.01
48 204 0.98
49 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTATCTCTCATATCAATGCC
Found at i:60661504 original size:96 final size:96
Alignment explanation
Indices: 60661275--60661504 Score: 268
Period size: 96 Copynumber: 2.4 Consensus size: 96
60661265 ATCTCTCGTC
* *
60661275 TCAATGCCGATGCCATGTCCTACACATGGTCTTACACTGGCTCCCATATCGTGGTCGATGCTATG
1 TCAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCCCATATCATGGTCGATGCTATG
60661340 TCCCAAACATGGTCTTACACTAGTGCACATA
66 TCCCAAACATGGTCTTACACTAGTGCACATA
* * ** * *
60661371 TCAATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTTAT-TACATTGTTGATG-TCA
1 TCAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCCCATAT-CATGGTCGATGCT-A
* * * *
60661434 TGTTCCAAACATGGTCTTACACTAGTTCTCATG
64 TGTCCCAAACATGGTCTTACACTAGTGCACATA
* * * *
60661467 TC-GTGGCCGATGCCATGTCTTAGACATAGTCTGACACT
1 TCAAT-GCCGATGCCATGTCCTAGACATGGTCTTACACT
60661505 AGCACATATA
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
95 3 0.03
96 110 0.97
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (96 bp):
TCAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCCCATATCATGGTCGATGCTATG
TCCCAAACATGGTCTTACACTAGTGCACATA
Found at i:60661504 original size:144 final size:143
Alignment explanation
Indices: 60661133--60661513 Score: 390
Period size: 144 Copynumber: 2.7 Consensus size: 143
60661123 AAGAGGGTGA
* * * * * *
60661133 AATGCTGATACCATGTTCCAAACATGGTCTTACACGGGCTCACATGTCGAGACTGATGCCATGTC
1 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGTGGCCGATGCCATGTC
* * * * * *
60661198 CCAGACATGGTCTTACATTATCTCTCATCTCAATGCCGATGCCATGTCCCAGAGATGGTTTTATA
66 CCAGACATGGTCTTACACTAT-GCACATATCAATGCCGATGCCATGTCCCAGAGATGGTCTTACA
* * *
60661263 TTATCTCTCGTCTC
130 CTAGCTCTCATCTC
* * * * *
60661277 AATGCCGATGCCATG-TCCTACACATGGTCTTACACTGGCTCCCATATCGTGGTCGATGCTATGT
1 AATGCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACATGTCGTGGCCGATGCCATGT
* *
60661341 CCCAAACATGGTCTTACACTAGTGCACATATCAATGCCGATGCCATGTCCCAGATATGGTCTTAC
65 CCCAGACATGGTCTTACACTA-TGCACATATCAATGCCGATGCCATGTCCCAGAGATGGTCTTAC
* *
60661406 ACTGGCTCTTAT-TAC
129 ACTAGCTCTCATCT-C
* ** * * * *
60661421 ATTGTTGATGTCATGTTCCAAACATGGTCTTACACTAGTTCTCATGTCGTGGCCGATGCCATGTC
1 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGTGGCCGATGCCATGTC
** * *
60661486 TTAGACATAGTCTGACACTA-GCACATAT
66 CCAGACATGGTCTTACACTATGCACATAT
60661514 ATCACCCAAA
Statistics
Matches: 193, Mismatches: 40, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
142 8 0.04
143 4 0.02
144 177 0.92
145 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (143 bp):
AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGTGGCCGATGCCATGTC
CCAGACATGGTCTTACACTATGCACATATCAATGCCGATGCCATGTCCCAGAGATGGTCTTACAC
TAGCTCTCATCTC
Found at i:60666676 original size:47 final size:47
Alignment explanation
Indices: 60666613--60666975 Score: 541
Period size: 47 Copynumber: 7.6 Consensus size: 47
60666603 CCCTTCGGGA
* * *
60666613 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60666660 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60666707 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
60666754 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
60666801 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
60666850 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
60666897 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60666944 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
60666976 TCAAATATAC
Statistics
Matches: 293, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 227 0.77
49 64 0.22
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:60666873 original size:143 final size:143
Alignment explanation
Indices: 60666634--60666975 Score: 539
Period size: 143 Copynumber: 2.4 Consensus size: 143
60666624 TATACACTTC
*
60666634 CACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
* * * *
60666697 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
66 GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
60666762 ACATACAC-ATGTT
131 ACATACACGAT-TT
60666775 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
*
60666840 GCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACATCGGCTATTAGGCCTTATCA
66 GCCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATCGGCCATTAGGCCTTATCA
* * *
60666904 CATATATACGCTTT
130 CACATACACGATTT
* *
60666918 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCAT
60666976 TCAAATATAC
Statistics
Matches: 186, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
141 33 0.18
143 151 0.81
144 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (143 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
ACATACACGATTT
Found at i:60673716 original size:144 final size:144
Alignment explanation
Indices: 60673371--60673755 Score: 362
Period size: 144 Copynumber: 2.7 Consensus size: 144
60673361 AAGAGGGTGA
* * * * * *
60673371 AATGCTGATACCATGTTCCAAACATGGTCTTACACGAGCTCACATGTCGAGACTGATGCCATGTC
1 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGTGGCCGATGCCATGTC
* * * * * * * * *
60673436 CCATATATGGTCTTACATTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGAGATGGTTTTATA
66 CCAAACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACA
* * *
60673501 TTATCTCTCGTCTC
131 CTAGCTCTCATCTC
* * * * * * * * *
60673515 AATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCCCATATCATGGTCGATGCTATGTC
1 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGTGGCCGATGCCATGTC
60673580 CCAAACATGGTCTTACACTAG-TGCACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTAC
66 CCAAACATGGTCTTACACTAGCT-CACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTAC
* *
60673644 ACTGGCTCTTAT-TAC
130 ACTAGCTCTCATCT-C
* * * * * *
60673659 ATTGTCGATGTCATGTTCCAAACATGGTCTTACACTAGTTCTCATGTTGTGGCCGATGCCATGTC
1 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGTGGCCGATGCCATGTC
* * * * *
60673724 TCAGACATAGT-TTGACACTAGCACATATATCA
66 CCAAACATGGTCTT-ACACTAGCTCACATATCA
60673756 CCCAAATGTC
Statistics
Matches: 189, Mismatches: 48, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
143 4 0.02
144 185 0.98
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (144 bp):
AATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGTGGCCGATGCCATGTC
CCAAACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACA
CTAGCTCTCATCTC
Found at i:60673722 original size:48 final size:48
Alignment explanation
Indices: 60673371--60673703 Score: 296
Period size: 48 Copynumber: 6.9 Consensus size: 48
60673361 AAGAGGGTGA
* * * * * *
60673371 AATGCTGATACCATGTTCCAAACATGGTCTTACACGAGCTCACATGTC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC
* * * * * *
60673419 GA-GACTGATGCCATGTCCCATATATGGTCTTACATTAGCTCTCATCTC
1 AATG-CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC
* * * * * * * *
60673467 AATGCCGATGCCATGTCCCAGAGATGGTTTTATATTATCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC
* * * *
60673515 AATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCCCATATC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC
* * *
60673563 -ATGGTCGATGCTATGTCCCAAACATGGTCTTACACTAG-TGCACATATC
1 AAT-GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCT-CTCATATC
* *
60673611 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTTAT-TAC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT-C
* * * * *
60673659 ATTGTCGATGTCATGTTCCAAACATGGTCTTACACTAGTTCTCAT
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAT
60673704 GTTGTGGCCG
Statistics
Matches: 235, Mismatches: 43, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
47 5 0.02
48 226 0.96
49 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC
Found at i:60680410 original size:18 final size:18
Alignment explanation
Indices: 60680387--60680424 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
60680377 ATTGAGGAAC
60680387 AAATCTAAACAATGGTTG
1 AAATCTAAACAATGGTTG
60680405 AAATCTAAACAATGGTTG
1 AAATCTAAACAATGGTTG
60680423 AA
1 AA
60680425 TTCTTTACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (18 bp):
AAATCTAAACAATGGTTG
Found at i:60683799 original size:26 final size:24
Alignment explanation
Indices: 60683746--60683801 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 24
60683736 CCATTTCTTT
* *
60683746 TTATTTCTTTTCTTGTTCTATTTC
1 TTATTTCTTTTCTTATTCTAATTC
60683770 TTATTT-TTCTTCTTATTCTAGATTC
1 TTATTTCTT-TTCTTATTCTA-ATTC
60683795 ATTATTT
1 -TTATTT
60683802 AGCTATGTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 16 0.59
25 3 0.11
26 6 0.22
ACGTcount: A:0.14, C:0.14, G:0.04, T:0.68
Consensus pattern (24 bp):
TTATTTCTTTTCTTATTCTAATTC
Found at i:60685443 original size:22 final size:21
Alignment explanation
Indices: 60685409--60685453 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
60685399 ACCATTAAGT
*
60685409 TTATTTTTTTTGTTTTTATTG
1 TTATTTTTGTTGTTTTTATTG
60685430 TTATTTTTAGTTGTTTTTATTG
1 TTATTTTT-GTTGTTTTTATTG
60685452 TT
1 TT
60685454 TTTCTTACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.78
Consensus pattern (21 bp):
TTATTTTTGTTGTTTTTATTG
Found at i:60685468 original size:22 final size:22
Alignment explanation
Indices: 60685421--60685468 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
60685411 ATTTTTTTTG
* *
60685421 TTTTTATTGTTATTTTTAGTTG
1 TTTTTATTGTTATTTTTACTTA
60685443 TTTTTATTGTT-TTTCTTACTTA
1 TTTTTATTGTTATTT-TTACTTA
60685465 TTTT
1 TTTT
60685469 GTTTCTTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.12, C:0.04, G:0.08, T:0.75
Consensus pattern (22 bp):
TTTTTATTGTTATTTTTACTTA
Found at i:60711331 original size:27 final size:27
Alignment explanation
Indices: 60711301--60711478 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
60711291 ATATCGAGTC
* * * *
60711301 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
60711328 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60711355 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
60711383 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
60711410 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
60711437 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60711464 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60711479 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:60711440 original size:82 final size:81
Alignment explanation
Indices: 60711322--60711477 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
60711312 TGCTATATAA
*
60711322 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
60711387 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
60711404 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
60711468 CACTTAGTGC
65 CACTTAGTGC
60711478 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:60719369 original size:27 final size:27
Alignment explanation
Indices: 60719339--60719516 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
60719329 ATATCGAGTC
* * * *
60719339 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
60719366 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60719393 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* * *
60719421 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
60719448 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
60719475 CGCACACTTTGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60719502 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60719517 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 106 0.80
28 25 0.19
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:60719478 original size:82 final size:81
Alignment explanation
Indices: 60719360--60719515 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60719350 TGCTATATAA
*
60719360 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
60719425 CACTTAGTGCCACATGG
65 CACTTAGTGCCACATGG
* * ** *
60719442 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTTGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
60719506 CACTTAGTGC
65 CACTTAGTGC
60719516 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCACATGG
Found at i:60724992 original size:37 final size:37
Alignment explanation
Indices: 60724848--60724984 Score: 211
Period size: 37 Copynumber: 3.7 Consensus size: 37
60724838 GCTCAGACGA
* * * * *
60724848 AATCTCCACACGAAGTTATTGGGTTTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
60724885 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
60724922 ACTCTCCACACGTAGTCATCGGGGCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
60724959 AATCTCCACACGTAGTCATCGGGTCT
1 AATCTCCACACGTAGTCATCGGGTCT
60724985 CAACCGGAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:60725276 original size:47 final size:47
Alignment explanation
Indices: 60725198--60725531 Score: 515
Period size: 47 Copynumber: 7.1 Consensus size: 47
60725188 ATATATATTC
* * * * *
60725198 CACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
* *
60725245 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
*
60725292 CACATTGGCCACTCGGCCTTATCACATATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
*
60725339 CACATAGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
* * *
60725386 CACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
* *
60725433 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
* **
60725480 CACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
60725527 CACAT
1 CACAT
60725532 AAAATCCTAA
Statistics
Matches: 263, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 263 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
Found at i:60725365 original size:22 final size:22
Alignment explanation
Indices: 60725337--60725413 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
60725327 GTTCACATTC
60725337 ATCACATAGGCCATTCGGCCTT
1 ATCACATAGGCCATTCGGCCTT
* * *
60725359 ATCACATATATG-CATGTTC-ACATT
1 ATCAC--ATAGGCCA--TTCGGCCTT
60725383 CATCACATAGGCCATTCGGCCTT
1 -ATCACATAGGCCATTCGGCCTT
60725406 ATCACATA
1 ATCACATA
60725414 TATGCATGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
22 16 0.38
23 9 0.21
24 9 0.21
25 8 0.19
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATAGGCCATTCGGCCTT
Found at i:60742631 original size:68 final size:65
Alignment explanation
Indices: 60742521--60742772 Score: 210
Period size: 68 Copynumber: 3.8 Consensus size: 65
60742511 ATACAGATGG
** * * * * *
60742521 TATGTAGCTAGGTCACATGTAT-AGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACAAGACA
1 TATGTAGCTAGGTCACATGGGTGA-TACTATGTGTACACCATGTGTACAAGAGAGCTAC-AGAGA
60742585 TTA
64 -TA
*
60742588 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTATACAAGAGAGCTACAG-GAT
1 T-ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTGTACAAGAGAGCTACAGAGAT
60742652 A
65 A
* * * * * * *
60742653 TATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGTAG-ACAAGAGAGCTAC-GA
1 TATGTAGCTAGGTCACATGGGT-GATACTA-TG-TGTACACCATGT-GTACAAGAGAGCTACAGA
60742716 GATA
62 GATA
* * * *
60742720 AAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGTGTACAAGAGAG
1 TATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTGTACAAGAGAG
60742773 TTGAACTCTA
Statistics
Matches: 150, Mismatches: 26, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 20 0.13
65 10 0.07
66 20 0.13
67 32 0.21
68 48 0.32
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (65 bp):
TATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTGTACAAGAGAGCTACAGAGATA
Found at i:60745305 original size:27 final size:27
Alignment explanation
Indices: 60745275--60745514 Score: 286
Period size: 27 Copynumber: 8.9 Consensus size: 27
60745265 CCTTAATCAA
* * * *
60745275 TAAAATGATTATTTTTCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
60745302 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
60745329 TAAAATCACTGTTTTGCCTTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
60745356 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * * *
60745383 TAAATTGACTATTTTGGCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
60745410 TAAAATGATTATTTTACCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
60745437 TAAAATGACTGTTTTGCCCTGAT-ATGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
*
60745464 TAAAATGACTGTTTTGCCCTT-TTATGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
* *
60745491 TAAGATGACTGTTTTACCCTTATG
1 TAAAATGACTGTTTTGCCCTTATG
60745515 TGATGTATGT
Statistics
Matches: 184, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 181 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:60745836 original size:18 final size:18
Alignment explanation
Indices: 60745813--60745884 Score: 92
Period size: 18 Copynumber: 4.1 Consensus size: 18
60745803 GAACTTGCAT
*
60745813 ACTGTTTACTATTACTAC
1 ACTGTTTACTATTACTGC
*
60745831 ACTGTTTACTGTTACTGC
1 ACTGTTTACTATTACTGC
*
60745849 ACTG-CTACTATTACTGC
1 ACTGTTTACTATTACTGC
* *
60745866 ACTATTTACTGTTACTGC
1 ACTGTTTACTATTACTGC
60745884 A
1 A
60745885 TTGGGCCAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
17 14 0.30
18 32 0.70
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.42
Consensus pattern (18 bp):
ACTGTTTACTATTACTGC
Found at i:60749275 original size:27 final size:27
Alignment explanation
Indices: 60749138--60749266 Score: 186
Period size: 27 Copynumber: 4.8 Consensus size: 27
60749128 CCTTAATCGA
*
60749138 TAAAATGACTATTTTTCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGGGG
* *
60749165 TAAAATGATTGTTTTGCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGGGG
* * *
60749192 TAAAATGATTATTTTTCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGGGG
*
60749219 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGGGG
*
60749246 TAAAATGACTGTTTTGCCCTT
1 TAAAATGACTATTTTGCCCTT
60749267 TTATGGTAAG
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGGGG
Found at i:60749275 original size:54 final size:53
Alignment explanation
Indices: 60749138--60749298 Score: 187
Period size: 54 Copynumber: 3.0 Consensus size: 53
60749128 CCTTAATCGA
** * *
60749138 TAAAATGACTATTTTTCCCTTATGGGGTAAAATGATTGTTTTGCCCTTATGGGG
1 TAAAATGACTATTTTTCCCTT-TTAGGTAAAATGACTGTTTTGCCCTTATGTGG
* * *
60749192 TAAAATGATTATTTTTCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTTCCCTT-TTAGGTAAAATGACTGTTTTGCCCTTATGTGG
* * * * *
60749246 TAAAATGACTGTTTTGCCCTTTTATGGTAAGATGACTGTTTTACCCCTATGTG
1 TAAAATGACTATTTTTCCCTTTTA-GGTAAAATGACTGTTTTGCCCTTATGTG
60749299 ATGTATTTTT
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 2 0.02
54 91 0.98
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (53 bp):
TAAAATGACTATTTTTCCCTTTTAGGTAAAATGACTGTTTTGCCCTTATGTGG
Found at i:60749280 original size:27 final size:27
Alignment explanation
Indices: 60749138--60749287 Score: 158
Period size: 27 Copynumber: 5.6 Consensus size: 27
60749128 CCTTAATCGA
* * **
60749138 TAAAATGACTATTTTTCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* **
60749165 TAAAATGATTGTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* * *
60749192 TAAAATGATTATTTTTCCCTTATGA-GG
1 TAAAATGACTGTTTTGCCCTTAT-ATGG
* *
60749219 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
60749246 TAAAATGACTGTTTTGCCCTTTTATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
60749273 TAAGATGACTGTTTT
1 TAAAATGACTGTTTT
60749288 ACCCCTATGT
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATATGG
Found at i:60749642 original size:17 final size:18
Alignment explanation
Indices: 60749615--60749652 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
60749605 GGACTTGCAT
60749615 ACTGTTTACTGTTACTAC
1 ACTGTTTACTGTTACTAC
60749633 ACTG-TTACTGTTACTAC
1 ACTGTTTACTGTTACTAC
60749650 ACT
1 ACT
60749653 ACAATGGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.42
Consensus pattern (18 bp):
ACTGTTTACTGTTACTAC
Found at i:60757468 original size:42 final size:42
Alignment explanation
Indices: 60757406--60757488 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
60757396 CTAAAACATA
* *
60757406 TGTAACACCCCTCACCCGTATTCAACGCTAGAATAGGGTTAT
1 TGTAACACCCCTCACACGTATTCAACGCCAGAATAGGGTTAT
*
60757448 TGTAACACCCCTCACACGTATTCAACTCCAGAATAGGGTTA
1 TGTAACACCCCTCACACGTATTCAACGCCAGAATAGGGTTA
60757489 CGGTGCATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (42 bp):
TGTAACACCCCTCACACGTATTCAACGCCAGAATAGGGTTAT
Found at i:60766289 original size:27 final size:28
Alignment explanation
Indices: 60766259--60766316 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
60766249 AATTTTTGAT
60766259 AAAATGAGCTATTTG-GG-CTAATTTGTG
1 AAAATGAGCT-TTTGAGGACTAATTTGTG
*
60766286 AAAATGAGGTTTTGAAGGACTAATTTGTG
1 AAAATGAGCTTTTG-AGGACTAATTTGTG
60766315 AA
1 AA
60766317 TTTAACATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 4 0.15
27 9 0.33
28 2 0.07
29 12 0.44
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.34
Consensus pattern (28 bp):
AAAATGAGCTTTTGAGGACTAATTTGTG
Found at i:60775779 original size:15 final size:15
Alignment explanation
Indices: 60775761--60775791 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
60775751 TCCAGGACAA
60775761 AGAAATCCAAGATAC
1 AGAAATCCAAGATAC
*
60775776 AGAAATCTAAGATAC
1 AGAAATCCAAGATAC
60775791 A
1 A
60775792 ATATCATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.16, G:0.13, T:0.16
Consensus pattern (15 bp):
AGAAATCCAAGATAC
Found at i:60779589 original size:37 final size:37
Alignment explanation
Indices: 60779527--60779635 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
60779517 AGCTCAGATG
* * *
60779527 AAATCTCCACACGAAGTTATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
60779564 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
60779601 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
60779636 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:60779834 original size:48 final size:48
Alignment explanation
Indices: 60779776--60780062 Score: 475
Period size: 48 Copynumber: 5.9 Consensus size: 48
60779766 ATATACACAC
* * *
60779776 ATCTCCTACATATTTCACACTAACCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60779824 ATCTCATACATATTTCACACTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* **
60779872 ATCTCAGATATATATTTCACGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60779922 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60779970 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
60780018 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
60780063 TACACTTCCA
Statistics
Matches: 226, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
48 182 0.81
50 44 0.19
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:60780064 original size:146 final size:147
Alignment explanation
Indices: 60779761--60780067 Score: 476
Period size: 146 Copynumber: 2.1 Consensus size: 147
60779751 GGTCATTCGG
* *
60779761 CCACAATATACACACATCTCCTACATATTTCACACTAACCATTCAGCTTTACCACATATACATAT
1 CCAC-ATATATACACATCTCATACATATTTCACACTAACCATTCAGCTTTACCACATATACATAT
* *
60779826 CTCATACATATTTCACACTAGTCATTCGGCTTTACCACATATACATATCTCAGATATATATTTCA
65 CTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCA
**
60779891 CGTTAGCCATTCGGCTTTA
129 CACTAGCCATTCGGCTTTA
* * * *
60779910 CCAC--ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 CCACATATATACACATCTCATACATATTTCACACTAACCATTCAGCTTTACCACATATACATATC
*
60779973 TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACA
66 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACA
60780037 CTAGCCATTCGGCTTTA
131 CTAGCCATTCGGCTTTA
60780054 CCACATATATACAC
1 CCACATATATACAC
60780068 TTCCACGTTT
Statistics
Matches: 144, Mismatches: 12, Indels: 7
0.88 0.07 0.04
Matches are distributed among these distances:
144 32 0.22
146 108 0.75
149 4 0.03
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (147 bp):
CCACATATATACACATCTCATACATATTTCACACTAACCATTCAGCTTTACCACATATACATATC
TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACA
CTAGCCATTCGGCTTTA
Found at i:60780106 original size:47 final size:47
Alignment explanation
Indices: 60780079--60780366 Score: 486
Period size: 47 Copynumber: 6.1 Consensus size: 47
60780069 TCCACGTTTG
** *
60780079 TCACATTGGCCATTTTGCCTTATCACATATATGCATGTTCTCATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
60780126 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
60780173 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
60780220 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
60780267 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
60780314 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
60780361 TCACAT
1 TCACAT
60780367 AAAATCCTAA
Statistics
Matches: 232, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 232 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:60780223 original size:25 final size:25
Alignment explanation
Indices: 60780194--60780318 Score: 76
Period size: 23 Copynumber: 5.2 Consensus size: 25
60780184 ATTCGGCCTT
60780194 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
60780219 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
60780241 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
60780266 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
60780288 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
60780313 ATCACA
1 ATCACA
60780319 TTGGCCATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 12 0.16
23 22 0.30
24 22 0.30
25 18 0.24
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:60780229 original size:141 final size:141
Alignment explanation
Indices: 60780040--60780366 Score: 494
Period size: 141 Copynumber: 2.3 Consensus size: 141
60780030 TTTCACACTA
* * * * ** **
60780040 GCCATTCGGCTTTACCACATATATACAC-TTCCACGTTTGTCACATTGGCCATTTTGCCTTATCA
1 GCCATTCGGCCTTATCACACATATACACATT-CACATTCATCACATTGGCCATTCGGCCTTATCA
* * *
60780104 CATATATGCATGTTCTCATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
65 CACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
60780169 TTCATCACATTG
130 TTCATCACATTG
* **
60780181 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCAC
60780246 ACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACAT
66 ACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACAT
60780311 TCATCACATTG
131 TCATCACATTG
* *
60780322 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATACACATTCACATTCATCACAT
60780367 AAAATCCTAA
Statistics
Matches: 167, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
141 165 0.99
142 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (141 bp):
GCCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACAT
TCATCACATTG
Found at i:60788778 original size:13 final size:13
Alignment explanation
Indices: 60788760--60788788 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
60788750 TTTCAATCTT
60788760 TTTGTTTTGGTCA
1 TTTGTTTTGGTCA
60788773 TTTGTTTTGGTCA
1 TTTGTTTTGGTCA
60788786 TTT
1 TTT
60788789 TTGGTATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.21, T:0.66
Consensus pattern (13 bp):
TTTGTTTTGGTCA
Found at i:60791391 original size:48 final size:49
Alignment explanation
Indices: 60791306--60791492 Score: 186
Period size: 48 Copynumber: 3.8 Consensus size: 49
60791296 GTCATTAGGG
*
60791306 GATA-CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCAGGTGCGA
1 GATATCATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGA
* * * *
60791354 GCT-TCATTTATTTGGTTTTGGGCCATGATATTAGCACTTC-GTGTGCGA
1 GATATCATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAG-GTGCGA
* ** *
60791402 GATAT-ATTGATTTGGGTTCGGGTAATGATATTAGTACTTCAGGTGCGA
1 GATATCATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGA
* * *
60791450 GATATATATATTGAGTTT-GCTTCGGGCCAAGATATTGGCACTT
1 G--ATAT-CATTGA-TTTGGCTTCGGGCCATGATATTAGCACTT
60791493 AGTGTGCAAG
Statistics
Matches: 112, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
47 1 0.01
48 78 0.70
49 2 0.02
50 4 0.04
52 24 0.21
53 3 0.03
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.37
Consensus pattern (49 bp):
GATATCATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGA
Found at i:60793691 original size:42 final size:42
Alignment explanation
Indices: 60793632--60793716 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
60793622 ATACATTTGA
60793632 ATGATTACGGAGCATTATCGGGCTTATTTCTAAAATAATCAT
1 ATGATTACGGAGCATTATCGGGCTTATTTCTAAAATAATCAT
60793674 ATGATTACGGAGCATTATCGGGCTTATTTCTAAAATAATCAT
1 ATGATTACGGAGCATTATCGGGCTTATTTCTAAAATAATCAT
60793716 A
1 A
60793717 CATTTCATAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (42 bp):
ATGATTACGGAGCATTATCGGGCTTATTTCTAAAATAATCAT
Found at i:60801298 original size:10 final size:10
Alignment explanation
Indices: 60801285--60801324 Score: 62
Period size: 10 Copynumber: 3.8 Consensus size: 10
60801275 AAAAATGATC
60801285 AAAATTAATA
1 AAAATTAATA
60801295 AAAATTAGATA
1 AAAATTA-ATA
60801306 TAAAATTAATA
1 -AAAATTAATA
60801317 AAAATTAA
1 AAAATTAA
60801325 ATATGTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 15 0.54
11 6 0.21
12 7 0.25
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (10 bp):
AAAATTAATA
Found at i:60801337 original size:22 final size:22
Alignment explanation
Indices: 60801285--60801328 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
60801275 AAAAATGATC
*
60801285 AAAATTAATAAAAATTAGATAT
1 AAAATTAATAAAAATTAAATAT
60801307 AAAATTAATAAAAATTAAATAT
1 AAAATTAATAAAAATTAAATAT
60801329 GTTAATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATTAATAAAAATTAAATAT
Found at i:60810578 original size:13 final size:13
Alignment explanation
Indices: 60810560--60810584 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60810550 AGTGACCAAA
60810560 AATGACCAAAATG
1 AATGACCAAAATG
60810573 AATGACCAAAAT
1 AATGACCAAAAT
60810585 AAAAAGGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (13 bp):
AATGACCAAAATG
Found at i:60811658 original size:15 final size:15
Alignment explanation
Indices: 60811631--60811677 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
60811621 CATAGTACTG
*
60811631 TATCTTAGGTTTCTT
1 TATCTTGGGTTTCTT
60811646 TAT-TCTGGGTTTCTT
1 TATCT-TGGGTTTCTT
*
60811661 TATCTTGGATTTCTT
1 TATCTTGGGTTTCTT
60811676 TA
1 TA
60811678 CTCGATTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 1 0.04
15 26 0.93
16 1 0.04
ACGTcount: A:0.13, C:0.13, G:0.15, T:0.60
Consensus pattern (15 bp):
TATCTTGGGTTTCTT
Found at i:60820087 original size:30 final size:30
Alignment explanation
Indices: 60820053--60820113 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
60820043 TCCTTAACTC
60820053 AAACTTTAT-AAAAATTACAATTTTGCCCCT
1 AAACTTT-TGAAAAATTACAATTTTGCCCCT
* * *
60820083 AAACTTTTGAATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
60820113 A
1 A
60820114 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:60823320 original size:30 final size:29
Alignment explanation
Indices: 60823284--60823343 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
60823274 AGAGCCTTGG
60823284 GGCAAAAGTGTAAATATGCAAAAGTTTAGA
1 GGCAAAAGTGTAAATATGCAAAAG-TTAGA
* * * *
60823314 GGCAAAATTGTAATTTTGCCAAAGTTAGA
1 GGCAAAAGTGTAAATATGCAAAAGTTAGA
60823343 G
1 G
60823344 TTAAGGAACG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (29 bp):
GGCAAAAGTGTAAATATGCAAAAGTTAGA
Found at i:60823874 original size:52 final size:53
Alignment explanation
Indices: 60823778--60823881 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 53
60823768 ATAAACTACT
* * * ** *
60823778 ATAAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATCACAATGGTAAGTTC
* *
60823831 ATAAGG-AAGGATACCACGTAAGACCATGTCAAGACATCACAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATCACAATGGTAAGTT
60823882 TAAAAAGGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
52 37 0.86
53 6 0.14
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATCACAATGGTAAGTTC
Found at i:60830342 original size:34 final size:34
Alignment explanation
Indices: 60830304--60830375 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
60830294 GTAACAGTCC
60830304 AGTATCAGT-TAAGGCCTTAGCCCATTACAGTAAA
1 AGTATCAGTGT-AGGCCTTAGCCCATTACAGTAAA
* * *
60830338 AGTATCAGTGTGGGCCTTAGCCCATTTCAGTAAT
1 AGTATCAGTGTAGGCCTTAGCCCATTACAGTAAA
60830372 AGTA
1 AGTA
60830376 ACAAGACAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (34 bp):
AGTATCAGTGTAGGCCTTAGCCCATTACAGTAAA
Found at i:60838478 original size:27 final size:26
Alignment explanation
Indices: 60838422--60838478 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
60838412 CAACCTTAAC
* * *
60838422 CCTAGTGGTATATTAGTAATTTTACT
1 CCTAGGGGTAAATTAGTAATTTTACA
* *
60838448 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATTAGT-AATTTTACA
60838475 CCTA
1 CCTA
60838479 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (26 bp):
CCTAGGGGTAAATTAGTAATTTTACA
Found at i:60847906 original size:2 final size:2
Alignment explanation
Indices: 60847899--60847925 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
60847889 TACCAGGTCA
60847899 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
60847926 GGTACTACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:60848998 original size:12 final size:12
Alignment explanation
Indices: 60848981--60849007 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
60848971 CCTATGTTCC
60848981 ATGCCTTGTGCT
1 ATGCCTTGTGCT
60848993 ATGCCTTGTGCT
1 ATGCCTTGTGCT
60849005 ATG
1 ATG
60849008 TCGTTCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.11, C:0.22, G:0.26, T:0.41
Consensus pattern (12 bp):
ATGCCTTGTGCT
Found at i:60851874 original size:46 final size:46
Alignment explanation
Indices: 60851819--60851993 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
60851809 GGTTGAGCAT
60851819 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
60851865 CCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
60851910 ATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
60851958 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60851994 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
45 4 0.04
46 61 0.57
47 26 0.24
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:60851974 original size:93 final size:93
Alignment explanation
Indices: 60851815--60851985 Score: 333
Period size: 93 Copynumber: 1.8 Consensus size: 93
60851805 GGATGGTTGA
60851815 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
60851880 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
60851908 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
60851973 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60851986 ACTTATGGGC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60855941 original size:3 final size:3
Alignment explanation
Indices: 60855927--60855972 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
60855917 CGAATGTATT
60855927 TAA TAA -AA TAA TAA T-A TCAA -AA CTAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA -TAA TAA TAA TAA TAA TAA TAA
60855971 TA
1 TA
60855973 TAAATGTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
2 6 0.16
3 29 0.76
4 3 0.08
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:60855968 original size:15 final size:14
Alignment explanation
Indices: 60855927--60855976 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 14
60855917 CGAATGTATT
60855927 TAATAAAATAATAA
1 TAATAAAATAATAA
60855941 T-ATCAAAACTAATAA
1 TAAT-AAAA-TAATAA
60855956 TAATAATAATAATAA
1 TAATAA-AATAATAA
60855971 T-ATAAA
1 TAATAAA
60855977 TGTATACGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
13 3 0.09
14 9 0.28
15 16 0.50
16 4 0.12
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (14 bp):
TAATAAAATAATAA
Found at i:60857563 original size:21 final size:21
Alignment explanation
Indices: 60857539--60857600 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 21
60857529 AATCAATTCC
60857539 ACTGAAACTTCAAGGAGATCT
1 ACTGAAACTTCAAGGAGATCT
* * **** *
60857560 ACTGTAGCTTCGCTTA-ATCC
1 ACTGAAACTTCAAGGAGATCT
60857580 ACTGAAACTTCAAGGAGATCT
1 ACTGAAACTTCAAGGAGATCT
60857601 GCTGTAGCTT
Statistics
Matches: 26, Mismatches: 14, Indels: 2
0.62 0.33 0.05
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (21 bp):
ACTGAAACTTCAAGGAGATCT
Found at i:60857636 original size:38 final size:41
Alignment explanation
Indices: 60857525--60857641 Score: 159
Period size: 41 Copynumber: 2.9 Consensus size: 41
60857515 AGACACGTGA
* *
60857525 CTTCAATCAATTCCACTGAAACTTCAAGGAGATCTACTGTAG
1 CTTCGATCAATT-CACTGAAACTTCAAGGAGATCTGCTGTAG
* * *
60857567 CTTCGCTTAATCCACTGAAACTTCAAGGAGATCTGCTGTAG
1 CTTCGATCAATTCACTGAAACTTCAAGGAGATCTGCTGTAG
60857608 CTT-GATCAATTC-CTG-AACTTCAAGGAGATCTGCT
1 CTTCGATCAATTCACTGAAACTTCAAGGAGATCTGCT
60857642 ATGGCTTTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
38 19 0.28
39 3 0.04
40 6 0.09
41 31 0.46
42 8 0.12
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (41 bp):
CTTCGATCAATTCACTGAAACTTCAAGGAGATCTGCTGTAG
Found at i:60858237 original size:43 final size:44
Alignment explanation
Indices: 60858160--60858254 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 44
60858150 CTATACATTT
* *
60858160 AGTCTGCTCCACTGCGACTTCAAGGAGATGAGACTTGTAACTTC
1 AGTCTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTC
* * *
60858204 AGTCTGCTCTACTGC-ACTTCAGGGAGATAAGACTAGTGACTTC
1 AGTCTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTC
*
60858247 AATCTGCT
1 AGTCTGCT
60858255 TCGCTGAGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
43 31 0.69
44 14 0.31
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28
Consensus pattern (44 bp):
AGTCTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTC
Found at i:60866585 original size:22 final size:22
Alignment explanation
Indices: 60866533--60866597 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
60866523 TTAAAGCCTT
* *
60866533 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
60866555 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
60866577 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
60866598 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:60866808 original size:27 final size:27
Alignment explanation
Indices: 60866756--60866812 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
60866746 ATTCTGTTAA
* *
60866756 GTGGCTTTGCCACATTACCTGTTTCTG
1 GTGGCTATGCCACAATACCTGTTTCTG
*
60866783 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATACCTGTTTCTG
60866810 GTG
1 GTG
60866813 ACTCTATCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATACCTGTTTCTG
Found at i:60867005 original size:6 final size:6
Alignment explanation
Indices: 60866967--60867086 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
60866957 TTGCATTCAC
* * *
60866967 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCT-
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
60867016 ATTACCTC ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
60867067 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
60867087 AATGTTTCTT
Statistics
Matches: 89, Mismatches: 13, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 7 0.08
6 65 0.73
7 13 0.15
8 4 0.04
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:60867013 original size:31 final size:31
Alignment explanation
Indices: 60866967--60867077 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
60866957 TTGCATTCAC
* *
60866967 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTAATACTG
* * *
60866999 ATTCTGATTTTGATTCTATTACCTCATACTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
* *
60867030 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
60867061 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
60867078 AGTTCTGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 65 0.90
32 7 0.10
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTAATACTG
Found at i:60867933 original size:28 final size:28
Alignment explanation
Indices: 60867873--60867927 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
60867863 AAAATATAAT
60867873 AATTA-TAAAATAATTAAATTTCAATCA
1 AATTATTAAAATAATTAAATTTCAATCA
*
60867900 AATTATTAAAAT-ATTAAATTTTAATCA
1 AATTATTAAAATAATTAAATTTCAATCA
60867927 A
1 A
60867928 TTTTATATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (28 bp):
AATTATTAAAATAATTAAATTTCAATCA
Found at i:60867940 original size:22 final size:22
Alignment explanation
Indices: 60867910--60867953 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
60867900 AATTATTAAA
*
60867910 ATATTAAATTTTAATCAATTTT
1 ATATCAAATTTTAATCAATTTT
* *
60867932 ATATCAAATTTTTATTAATTTT
1 ATATCAAATTTTAATCAATTTT
60867954 GTTCATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (22 bp):
ATATCAAATTTTAATCAATTTT
Found at i:60874551 original size:61 final size:63
Alignment explanation
Indices: 60874409--60874551 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 63
60874399 TCAAGCTCTA
*
60874409 CTGGGCC-TAAGCCCTATT-CAGAAATCAGAGTTAACTGAGCCTGAGCCCATATCAATATTAAT
1 CTGGGCCAT-AGCCCTATTACAGAAATCAGAGTTAACTGAGCCTGAGCCCATATCAATATCAAT
* * * *
60874471 CTGGGCCATAGCCC-CTTACAG-TATCAGAG-TATACTGAGCCT-AGCCCATATCAGTGTCAAT
1 CTGGGCCATAGCCCTATTACAGAAATCAGAGTTA-ACTGAGCCTGAGCCCATATCAATATCAAT
* *
60874531 CTGGGTCGTAGCCCTATTACA
1 CTGGGCCATAGCCCTATTACA
60874552 AGTCGAGATA
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
60 30 0.43
61 23 0.33
62 15 0.22
63 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (63 bp):
CTGGGCCATAGCCCTATTACAGAAATCAGAGTTAACTGAGCCTGAGCCCATATCAATATCAAT
Found at i:60886211 original size:24 final size:24
Alignment explanation
Indices: 60886179--60886233 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
60886169 GGACATGCTG
60886179 CTCAATAACATTATGGCCAAGCCA
1 CTCAATAACATTATGGCCAAGCCA
* *
60886203 CTCAATAACGTTGTGGCCAAGCCA
1 CTCAATAACATTATGGCCAAGCCA
60886227 CTCAATA
1 CTCAATA
60886234 TTGTAGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.22
Consensus pattern (24 bp):
CTCAATAACATTATGGCCAAGCCA
Found at i:60888764 original size:39 final size:39
Alignment explanation
Indices: 60888702--60888780 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
60888692 GACAATATCT
* *
60888702 GGGATATGGCATCAATATGAGACTACGTGTAAGACTATA
1 GGGATATGGCATCAATATAAGACTACGTGTAAGACCATA
* *
60888741 GGGATATGGCATCGATATAAGACTTCGTGTAAGACCATA
1 GGGATATGGCATCAATATAAGACTACGTGTAAGACCATA
60888780 G
1 G
60888781 CTGGGCTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (39 bp):
GGGATATGGCATCAATATAAGACTACGTGTAAGACCATA
Found at i:60896440 original size:43 final size:43
Alignment explanation
Indices: 60896379--60896469 Score: 182
Period size: 43 Copynumber: 2.1 Consensus size: 43
60896369 GGATATCATC
60896379 AACTTTTCCTAACTCTTAAAGAGATGATCGAATGTAATATTCT
1 AACTTTTCCTAACTCTTAAAGAGATGATCGAATGTAATATTCT
60896422 AACTTTTCCTAACTCTTAAAGAGATGATCGAATGTAATATTCT
1 AACTTTTCCTAACTCTTAAAGAGATGATCGAATGTAATATTCT
60896465 AACTT
1 AACTT
60896470 CGTATTGTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (43 bp):
AACTTTTCCTAACTCTTAAAGAGATGATCGAATGTAATATTCT
Found at i:60899581 original size:50 final size:49
Alignment explanation
Indices: 60899476--60899601 Score: 157
Period size: 50 Copynumber: 2.5 Consensus size: 49
60899466 GAGACTGATA
* * *
60899476 CCATGTCCCAGAAATGTTCTTACACTAGCTCTCATACCTACATGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCT-ATACCTACATGCTAATG
* *
60899526 TCATGTCCCAGACATGGTCTTACACTAGCTCT-TGCCTATCCATG-TCAATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTATACCTA--CATGCT-AATG
60899576 CCATGTCCCAGACATGGTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
60899602 GACATGTCTT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
48 5 0.07
49 1 0.01
50 61 0.91
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (49 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTATACCTACATGCTAATG
Found at i:60899654 original size:45 final size:44
Alignment explanation
Indices: 60899580--60899739 Score: 144
Period size: 45 Copynumber: 3.5 Consensus size: 44
60899570 TCAATGCCAT
*
60899580 GTCCCAGACATGGTCTTACACTGACATGTCTTGTA-ACCGATGCAA
1 GTCCCAGACAT-GTCTTACACTGACATGTCTCG-AGACCGATGCAA
* * *
60899625 GTCTCAGACATGTCTTACACTG-CTTATGTCTCGAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTGAC--ATGTCTCGAGACCGATGCAA
* * * * *
60899670 GTCCCGGACATGTCTTACACTGGCACTTGTCTCAATACCGATGCCAT
1 GTCCCAGACATGTCTTACACT-G-ACATGTCTCGAGACCGATG-CAA
*
60899717 GTCCCGGACATGGTCTTACACTG
1 GTCCCAGACAT-GTCTTACACTG
60899740 GCAAACAAAT
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 12 0.12
45 44 0.45
46 14 0.14
47 15 0.15
48 11 0.11
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (44 bp):
GTCCCAGACATGTCTTACACTGACATGTCTCGAGACCGATGCAA
Found at i:60900733 original size:44 final size:44
Alignment explanation
Indices: 60900683--60900772 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
60900673 TCTCCCAAGC
60900683 CTTGTTTTTAATGTTCTTCGTAATTTTGAAGTCTCGGTAGCTTA
1 CTTGTTTTTAATGTTCTTCGTAATTTTGAAGTCTCGGTAGCTTA
60900727 CTTGTTTTTAATGTTCTTCGTAATTTTGAAGTCTCGGTAGCTTA
1 CTTGTTTTTAATGTTCTTCGTAATTTTGAAGTCTCGGTAGCTTA
60900771 CT
1 CT
60900773 CTCTCCATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.18, C:0.14, G:0.18, T:0.50
Consensus pattern (44 bp):
CTTGTTTTTAATGTTCTTCGTAATTTTGAAGTCTCGGTAGCTTA
Found at i:60905611 original size:24 final size:24
Alignment explanation
Indices: 60905584--60905633 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
60905574 CCAAATGAAA
*
60905584 ATATATTCATTAATCTTA-AATTCC
1 ATAT-TTCATTAATCATATAATTCC
*
60905608 ATATTTTATTAATCATATAATTCC
1 ATATTTCATTAATCATATAATTCC
60905632 AT
1 AT
60905634 CTCTACTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (24 bp):
ATATTTCATTAATCATATAATTCC
Found at i:60906496 original size:93 final size:93
Alignment explanation
Indices: 60906352--60906563 Score: 343
Period size: 93 Copynumber: 2.3 Consensus size: 93
60906342 AGCAAACTCG
* * * *
60906352 GACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCACGAATTCAGACTCAACTCAACGAGTT
1 GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACAAACTCAGACTCAACTCAACGAGCT
* *
60906417 CGGGCATTCGCATCCATAAGTGAAATCA
66 CAGACATTCGCATCCATAAGTGAAATCA
*
60906445 GACTCAATTCAACGAGCTCGGATGCCTAGTTACATCTCACAAACTCAGACTCAACTCAACGAGCT
1 GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACAAACTCAGACTCAACTCAACGAGCT
*
60906510 CAGACATTCGCATCCATAAGTGAACTCA
66 CAGACATTCGCATCCATAAGTGAAATCA
*
60906538 GACTCGACTCAACGAGCTCGGATGCC
1 GACTCAACTCAACGAGCTCGGATGCC
60906564 CAAATATCCT
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 109 1.00
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (93 bp):
GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACAAACTCAGACTCAACTCAACGAGCT
CAGACATTCGCATCCATAAGTGAAATCA
Found at i:60906497 original size:47 final size:47
Alignment explanation
Indices: 60906344--60906510 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 47
60906334 CGCCCATAAG
* *
60906344 CAAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCA
1 CAAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
* * * *
60906391 CGAATTCAGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCATC-CA
1 CAAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTCA
* * *
60906433 TAAGTGAAATCAGACTCAATTCAACGAGCTCGGATGCCTAGTTACATCTCA
1 -CA---AACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
60906484 CAAACTCAGACTCAACTCAACGAGCTC
1 CAAACTCAGACTCAACTCAACGAGCTC
60906511 AGACATTCGC
Statistics
Matches: 94, Mismatches: 15, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
42 4 0.04
43 5 0.05
44 1 0.01
45 1 0.01
46 24 0.26
47 47 0.50
48 1 0.01
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (47 bp):
CAAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:60906548 original size:46 final size:46
Alignment explanation
Indices: 60906396--60906556 Score: 152
Period size: 46 Copynumber: 3.5 Consensus size: 46
60906386 TCTCACGAAT
* * * *
60906396 TCAGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAAA
1 TCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAAC
* * * *
60906442 TCAGACTCAATTCAACGAGCTCGGATGCCTAGTT-ACATCTCA-CA---AAC
1 TCAGACTCAACTCAACGAGCTC--A-GAC-A-TTCGCATC-CATAAGTGAAC
60906489 TCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAAC
1 TCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAAC
*
60906535 TCAGACTCGACTCAACGAGCTC
1 TCAGACTCAACTCAACGAGCTC
60906557 GGATGCCCAA
Statistics
Matches: 92, Mismatches: 12, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
42 4 0.04
43 6 0.07
44 2 0.02
45 1 0.01
46 44 0.48
47 23 0.25
49 2 0.02
50 6 0.07
51 4 0.04
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (46 bp):
TCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAAC
Found at i:60912377 original size:25 final size:25
Alignment explanation
Indices: 60912349--60912427 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
60912339 CGAATGGCCA
60912349 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
60912374 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
60912396 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
60912421 ATGTGAT
1 ATGTGAT
60912428 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:60912402 original size:22 final size:22
Alignment explanation
Indices: 60912374--60912496 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
60912364 ACATGCATAT
60912374 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
60912396 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
60912420 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
60912443 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
60912465 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
60912490 ATGTGAT
1 ATGTGAT
60912497 GAATATGAAC
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 24 0.32
23 17 0.23
24 17 0.23
25 17 0.23
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:60912542 original size:47 final size:47
Alignment explanation
Indices: 60912302--60912534 Score: 367
Period size: 47 Copynumber: 5.0 Consensus size: 47
60912292 TTAGGATTTT
** * * *
60912302 ATGTGATGAATGTGAATGTGTATATATGAGACAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60912349 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60912396 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
60912443 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
60912490 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCTGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
60912535 TAGTGTGAAA
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:60912842 original size:37 final size:37
Alignment explanation
Indices: 60912697--60912841 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
60912687 GGAAATATAT
60912697 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60912734 TCCGGGTAAGACCTGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60912771 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60912808 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
60912842 TCGTCTGAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60917235 original size:46 final size:45
Alignment explanation
Indices: 60917178--60917353 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
60917168 TATTTGGGCA
60917178 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
60917224 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
60917271 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
60917317 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60917354 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:60917333 original size:93 final size:93
Alignment explanation
Indices: 60917174--60917345 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
60917164 AGGATATTTG
* *
60917174 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
60917239 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
60917267 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
60917332 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
60917346 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:60917484 original size:21 final size:21
Alignment explanation
Indices: 60917459--60917502 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
60917449 CTACTCAAAT
60917459 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
60917480 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
60917501 GG
1 GG
60917503 GACATATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.36, T:0.14
Consensus pattern (21 bp):
GGAGGAATACTCGAGATGAAA
Found at i:60918806 original size:23 final size:23
Alignment explanation
Indices: 60918763--60918806 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
60918753 AACCCCTAAT
* *
60918763 ATGCATAATTGTTTGATTTATGA
1 ATGCATAATTGATTGAGTTATGA
60918786 ATGCATAA-TGATTGCAGTTAT
1 ATGCATAATTGATTG-AGTTAT
60918807 TATTGGCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (23 bp):
ATGCATAATTGATTGAGTTATGA
Found at i:60921747 original size:31 final size:30
Alignment explanation
Indices: 60921712--60921801 Score: 92
Period size: 31 Copynumber: 2.9 Consensus size: 30
60921702 ATTTTAAAGG
*
60921712 GTTAAAGTGATAAATTTTGTAAATATTAAAA
1 GTTAAATTGATAAATTTT-TAAATATTAAAA
* * *
60921743 GTTAAATTTATTAAATTTTTTATATAATAAAA
1 GTTAAATTGA-TAAA-TTTTTAAATATTAAAA
*
60921775 -TTAAATTGATAGAATATTTAAATATTA
1 GTTAAATTGATA-AATTTTTAAATATTA
60921802 GAGGATTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
30 12 0.25
31 18 0.38
32 14 0.29
33 4 0.08
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (30 bp):
GTTAAATTGATAAATTTTTAAATATTAAAA
Found at i:60921758 original size:32 final size:31
Alignment explanation
Indices: 60921722--60921781 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
60921712 GTTAAAGTGA
*
60921722 TAAATTTTGTAAATATTAAAAGTTAAATTTAT
1 TAAATTTTGTAAATAATAAAA-TTAAATTTAT
* *
60921754 TAAATTTTTTATATAATAAAATTAAATT
1 TAAATTTTGTAAATAATAAAATTAAATT
60921782 GATAGAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (31 bp):
TAAATTTTGTAAATAATAAAATTAAATTTAT
Found at i:60926801 original size:20 final size:20
Alignment explanation
Indices: 60926778--60926852 Score: 57
Period size: 20 Copynumber: 3.8 Consensus size: 20
60926768 TATACAAAAA
60926778 ATAAATAATATAAATTATTT
1 ATAAATAATATAAATTATTT
*
60926798 AT-AA-AATATAATTTAAATATT
1 ATAAATAATATAAATT--AT-TT
** *
60926819 -TAAATAATATTTATTTTTT
1 ATAAATAATATAAATTATTT
*
60926838 ATAATTAATATAAAT
1 ATAAATAATATAAAT
60926853 GAAAACTAGC
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
18 9 0.22
19 4 0.10
20 17 0.41
21 4 0.10
22 7 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
ATAAATAATATAAATTATTT
Found at i:60926814 original size:23 final size:22
Alignment explanation
Indices: 60926776--60926828 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
60926766 TATATACAAA
60926776 AAATAA-ATAATATAAATTATTT
1 AAATAATATAATATAAA-TATTT
*
60926798 ATAA-AATATAATTTAAATATTT
1 A-AATAATATAATATAAATATTT
60926820 AAATAATAT
1 AAATAATAT
60926829 TTATTTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.07
22 14 0.52
23 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AAATAATATAATATAAATATTT
Found at i:60927756 original size:24 final size:25
Alignment explanation
Indices: 60927711--60927757 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
60927701 CTTGTACTTC
* * *
60927711 AATTTAGTCATTTTCAATTTTTATA
1 AATTTAGTAATTTTAAAATTTTATA
60927736 AATTTAG-AATTTTAAAATTTTA
1 AATTTAGTAATTTTAAAATTTTA
60927758 GTCTTGACCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (25 bp):
AATTTAGTAATTTTAAAATTTTATA
Found at i:60928045 original size:36 final size:36
Alignment explanation
Indices: 60927998--60928072 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
60927988 ATTAGATAGC
60927998 ATTTGTCAATTTGTCTGTAATTTTAACATGAGCGAA
1 ATTTGTCAATTTGTCTGTAATTTTAACATGAGCGAA
60928034 ATTTGTCAATTTGTCTGTAATTTTAACATGAGCGAA
1 ATTTGTCAATTTGTCTGTAATTTTAACATGAGCGAA
60928070 ATT
1 ATT
60928073 AGTAAAGCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.43
Consensus pattern (36 bp):
ATTTGTCAATTTGTCTGTAATTTTAACATGAGCGAA
Found at i:60940627 original size:21 final size:20
Alignment explanation
Indices: 60940603--60940641 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
60940593 GAGTATTTTG
60940603 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
60940624 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
60940642 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:60940713 original size:25 final size:25
Alignment explanation
Indices: 60940685--60940734 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
60940675 CAAATTAGGG
*
60940685 ATTAAATTGTGCAATGTGGAAACTT
1 ATTAAATTGTGAAATGTGGAAACTT
60940710 ATTAAATTGTGAAATGTGGAAACTT
1 ATTAAATTGTGAAATGTGGAAACTT
60940735 TGTAGTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (25 bp):
ATTAAATTGTGAAATGTGGAAACTT
Found at i:60943896 original size:52 final size:50
Alignment explanation
Indices: 60943832--60943954 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 50
60943822 ATGAACAAAT
* * * *
60943832 GAGTTACTTAATGCATGACTTAAAT-TAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTT-AATGT-ATGATGAAAAC-TTAACTAACAAGA
* * *
60943884 GAGTTACATAATGCATGTCATAATGTATGGTGAAAACTTAACTAACAAGA
1 GAGTTACATAATGCATGACTTAATGTATGATGAAAACTTAACTAACAAGA
60943934 GAGTTACATAATGCATGACTT
1 GAGTTACATAATGCATGACTT
60943955 TTTTAAATGC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
50 30 0.49
51 12 0.20
52 19 0.31
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (50 bp):
GAGTTACATAATGCATGACTTAATGTATGATGAAAACTTAACTAACAAGA
Found at i:60945747 original size:39 final size:39
Alignment explanation
Indices: 60945689--60945884 Score: 202
Period size: 39 Copynumber: 5.0 Consensus size: 39
60945679 TTCAGTGATG
* *
60945689 TATATCCGGACTTAGGGTCCGCAGACTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
60945728 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
60945767 TATATCCGGACTTAAGGTCCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
60945806 TATGTCCGGGC-TAAAGTCCCGCAGGCT-TCGAGCTGGTAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTAT-GTGCTGGAAT
** **
60945845 TATA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGGTAAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTATGTGCTGG-AAT
60945884 T
1 T
60945885 GGTTTCAAGT
Statistics
Matches: 135, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
38 16 0.12
39 119 0.88
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:60964301 original size:46 final size:46
Alignment explanation
Indices: 60964251--60964424 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
60964241 ATGGTTGAGC
60964251 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
* * *
60964297 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACT
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T
* *
60964340 AGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC
1 ----ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
** *
60964390 GCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60964425 GGGGCGAGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
Found at i:60964408 original size:93 final size:93
Alignment explanation
Indices: 60964249--60964419 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
60964239 GGATGGTTGA
* *
60964249 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
60964314 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
60964342 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
60964407 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60964420 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60971062 original size:16 final size:16
Alignment explanation
Indices: 60971041--60971085 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
60971031 CTTAAATTCC
60971041 AAAATTATTTAAACCT
1 AAAATTATTTAAACCT
* *
60971057 AAAATTATTTTAACTT
1 AAAATTATTTAAACCT
* *
60971073 GAAATAATTTAAA
1 AAAATTATTTAAA
60971086 TCACAATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (16 bp):
AAAATTATTTAAACCT
Found at i:60972397 original size:10 final size:9
Alignment explanation
Indices: 60972347--60972398 Score: 50
Period size: 10 Copynumber: 5.3 Consensus size: 9
60972337 TTTTAAATTG
*
60972347 TTATAAAAT
1 TTATAAAAA
60972356 TTATAAAAA
1 TTATAAAAA
60972365 TATATATAAAA
1 T-TATA-AAAA
*
60972376 TTATTAAGAA
1 TTA-TAAAAA
60972386 TTATAAGAAA
1 TTATAA-AAA
60972396 TTA
1 TTA
60972399 ATTTTTTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
9 12 0.33
10 17 0.47
11 7 0.19
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (9 bp):
TTATAAAAA
Found at i:60972496 original size:28 final size:28
Alignment explanation
Indices: 60972438--60972496 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
60972428 ACCATTATAA
* *
60972438 ATAATTTTAAAATAAATTTCTATATTTT
1 ATAAATTTAAAATAAATTTCTATATTAT
* *
60972466 ATAAATTTATAAT-AATTTTTATAATTAT
1 ATAAATTTAAAATAAATTTCTAT-ATTAT
60972494 ATA
1 ATA
60972497 GAAAACAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 8 0.31
28 18 0.69
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (28 bp):
ATAAATTTAAAATAAATTTCTATATTAT
Found at i:60975468 original size:16 final size:16
Alignment explanation
Indices: 60975447--60975501 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
60975437 GTTTGGTTCC
*
60975447 CTGTAATTGAATAGGG
1 CTGTAATTGAATAGAG
60975463 CTGTAATTGAATAGAG
1 CTGTAATTGAATAGAG
*
60975479 CTGTAATGGAATAGAG
1 CTGTAATTGAATAGAG
*
60975495 CTATAAT
1 CTGTAAT
60975502 CAATAATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.31
Consensus pattern (16 bp):
CTGTAATTGAATAGAG
Found at i:60980363 original size:68 final size:68
Alignment explanation
Indices: 60980213--60980370 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
60980203 CTAGCCAATT
* **
60980213 TATCTCATAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCATAGCTCTCTTGTCTACATGGTGT-CTACACTCCGAATCACACATGCGACCTAGCTACA
**
60980278 TTTA
65 CATA
* * * *
60980282 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GT-TACA-TCCCGTATCACACATGTGACCTAGCTA
1 TATCT--CATAGCTCTCTTGTCTACATGGTGTCTACACT-CCGAATCACACATGCGACCTAGCTA
60980344 CTACATA
63 C-ACATA
60980351 GTATCTCATAGCTCTCTTGT
1 -TATCTCATAGCTCTCTTGT
60980371 ACACATGATG
Statistics
Matches: 73, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
67 1 0.01
68 38 0.52
69 7 0.10
70 6 0.08
71 21 0.29
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.35
Consensus pattern (68 bp):
TATCTCATAGCTCTCTTGTCTACATGGTGTCTACACTCCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:60987943 original size:43 final size:43
Alignment explanation
Indices: 60987807--60987947 Score: 130
Period size: 43 Copynumber: 3.3 Consensus size: 43
60987797 ACATAGGATC
* * *
60987807 TGATATGTGTTTTCGTGTAAGACCACGTCTGGGACA-TTGGCAT
1 TGATATTTGATTTCGTGTAAGACC-CATCTGGGACAGTTGGCAT
* * *
60987850 TGACT-TATGATTTACGTTTAAGACTACATCTGGGAC-GTTGGCAT
1 TGA-TATTTGATTT-CGTGTAAGAC-CCATCTGGGACAGTTGGCAT
* *
60987894 CG-TATTTGATTTCGTGTAAGACCCTATCTGGGACAGTT-GTAT
1 TGATATTTGATTTCGTGTAAGACCC-ATCTGGGACAGTTGGCAT
60987936 TGATATTTGATT
1 TGATATTTGATT
60987948 ACATGTAATA
Statistics
Matches: 79, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
41 1 0.01
42 23 0.29
43 28 0.35
44 27 0.34
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.38
Consensus pattern (43 bp):
TGATATTTGATTTCGTGTAAGACCCATCTGGGACAGTTGGCAT
Done.