Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 191 of 316
Found at i:61779616 original size:20 final size:21
Alignment explanation
Indices: 61779573--61779618 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
61779563 ACTGTTTTGT
61779573 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
61779593 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
61779612 TATGGGC
1 TATGGGC
61779619 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:61783473 original size:30 final size:27
Alignment explanation
Indices: 61783414--61783467 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
61783404 CTAAGCATGA
61783414 CAACCATTTTTCGATTAATCTAATGGT
1 CAACCATTTTTCGATTAATCTAATGGT
61783441 CAACCATTTTTCGATTAATCTAATGGT
1 CAACCATTTTTCGATTAATCTAATGGT
61783468 GGTCAATCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (27 bp):
CAACCATTTTTCGATTAATCTAATGGT
Found at i:61789834 original size:40 final size:40
Alignment explanation
Indices: 61789783--61790327 Score: 930
Period size: 40 Copynumber: 13.6 Consensus size: 40
61789773 CATTTGAATG
61789783 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
61789823 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
61789863 ATATCCGGGTTAGGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
61789903 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
61789943 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
61789983 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
61790023 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
61790063 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
61790103 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
61790143 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
61790183 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
61790223 ATATCCGGGCTAAAACCCGAAGGTAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
61790263 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
61790303 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
61790328 ATTGAGCTTG
Statistics
Matches: 481, Mismatches: 22, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.00
40 477 0.99
41 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:61795865 original size:40 final size:40
Alignment explanation
Indices: 61795814--61796318 Score: 843
Period size: 40 Copynumber: 12.6 Consensus size: 40
61795804 CATTTGAATG
*
61795814 ATATCCGGGCTAAGACACGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
61795854 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
61795894 ATATCCGGGTTAGGACCCGAAGGCATTTGTGTGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
61795934 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
61795974 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
61796014 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
61796054 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
61796094 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
61796134 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
61796174 ATATCCGGGCTAAGACCCGACGGCATTTATGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
61796214 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
61796254 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
61796294 ATACCCGAG-TAAAGACCCGAAGGCA
1 ATATCCGGGCT-AAGACCCGAAGGCA
61796319 ATTGAGCTTG
Statistics
Matches: 441, Mismatches: 21, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
39 3 0.01
40 436 0.99
41 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:61800704 original size:20 final size:20
Alignment explanation
Indices: 61800681--61800730 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
61800671 CCCTTGTTCG
* *
61800681 CACTTTGGTG-ATCTTGTTTA
1 CACTTTGGTGCAAC-TGTATA
*
61800701 CACTTTTGTGCAACTGTATA
1 CACTTTGGTGCAACTGTATA
61800721 CACTTTGGTG
1 CACTTTGGTG
61800731 TCCCTATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.44
Consensus pattern (20 bp):
CACTTTGGTGCAACTGTATA
Found at i:61800785 original size:20 final size:20
Alignment explanation
Indices: 61800760--61800797 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
61800750 GCCACTATTC
61800760 GCATTTCAGTGTCCCTGTAT
1 GCATTTCAGTGTCCCTGTAT
*
61800780 GCATTTCGGTGTCCCTGT
1 GCATTTCAGTGTCCCTGT
61800798 TTGAACGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.11, C:0.26, G:0.24, T:0.39
Consensus pattern (20 bp):
GCATTTCAGTGTCCCTGTAT
Found at i:61800810 original size:60 final size:60
Alignment explanation
Indices: 61800714--61800835 Score: 149
Period size: 60 Copynumber: 2.0 Consensus size: 60
61800704 TTTTGTGCAA
* *
61800714 CTGTATACACTTTGGTGTCCCTATTTGCACGACTGTGCCACT-ATTCGCATTTCAGTGTCC
1 CTGTATACACTTTGGTGTCCCTATTTGAACGACTGTGCCACTGATT-GCACTTCAGTGTCC
* * * * *
61800774 CTGTATGCA-TTTCGGTGTCCCTGTTTGAACGTCTGTGCCCCTGGTTGCACTTCAGTGTCC
1 CTGTATACACTTT-GGTGTCCCTATTTGAACGACTGTGCCACTGATTGCACTTCAGTGTCC
61800834 CT
1 CT
61800836 AGCTACACGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
59 3 0.06
60 48 0.91
61 2 0.04
ACGTcount: A:0.13, C:0.29, G:0.21, T:0.37
Consensus pattern (60 bp):
CTGTATACACTTTGGTGTCCCTATTTGAACGACTGTGCCACTGATTGCACTTCAGTGTCC
Found at i:61800835 original size:20 final size:20
Alignment explanation
Indices: 61800764--61800835 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
61800754 CTATTCGCAT
*
61800764 TTCAGTGTCCCT-GTATGCAT
1 TTCAGTGTCCCTGGT-TGCAC
* * *
61800784 TTCGGTGTCCCTGTTTGAAC
1 TTCAGTGTCCCTGGTTGCAC
* * *
61800804 GTCTGTGCCCCTGGTTGCAC
1 TTCAGTGTCCCTGGTTGCAC
61800824 TTCAGTGTCCCT
1 TTCAGTGTCCCT
61800836 AGCTACACGT
Statistics
Matches: 39, Mismatches: 12, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
20 38 0.97
21 1 0.03
ACGTcount: A:0.10, C:0.29, G:0.24, T:0.38
Consensus pattern (20 bp):
TTCAGTGTCCCTGGTTGCAC
Found at i:61803560 original size:27 final size:26
Alignment explanation
Indices: 61803516--61803567 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
61803506 CTCGCTGCAA
*
61803516 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
61803543 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
61803568 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:61806177 original size:27 final size:27
Alignment explanation
Indices: 61806146--61806323 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
61806136 TAAATTGTAC
61806146 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
61806173 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
61806199 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
61806227 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
61806255 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
61806282 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
61806309 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
61806324 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:61806260 original size:82 final size:81
Alignment explanation
Indices: 61806147--61806302 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
61806137 AAATTGTACA
* *
61806147 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
61806211 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
61806228 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
61806293 TGCGAGTTGA
65 TGCGAATTGA
61806303 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:61806314 original size:82 final size:81
Alignment explanation
Indices: 61806143--61806323 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
61806133 GATTAAATTG
* *
61806143 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
61806208 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
61806224 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
61806288 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
61806306 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
61806324 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:61812625 original size:79 final size:79
Alignment explanation
Indices: 61812494--61812655 Score: 324
Period size: 79 Copynumber: 2.1 Consensus size: 79
61812484 GACAGAAGTC
61812494 ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
1 ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
61812559 CGTCTTGGAAGAAA
66 CGTCTTGGAAGAAA
61812573 ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
1 ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
61812638 CGTCTTGGAAGAAA
66 CGTCTTGGAAGAAA
61812652 ATAT
1 ATAT
61812656 TAAGGTTTGG
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 83 1.00
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (79 bp):
ATATGTAGATTTAAAGCGCAAGGAAATTGAGTACTCTGTGGGTGATATGGTCTTCTTGAAGGTTT
CGTCTTGGAAGAAA
Found at i:61814329 original size:47 final size:47
Alignment explanation
Indices: 61814258--61814760 Score: 799
Period size: 47 Copynumber: 10.6 Consensus size: 47
61814248 CCCTTCGGGA
* * * * * * *
61814258 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61814305 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61814352 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
61814399 CTTATCACATATATATACAGTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61814448 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61814495 CTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61814542 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61814589 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61814638 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61814685 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61814732 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
61814761 TATTCAAATA
Statistics
Matches: 427, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
47 319 0.75
49 108 0.25
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61814527 original size:143 final size:142
Alignment explanation
Indices: 61814258--61814760 Score: 803
Period size: 143 Copynumber: 3.5 Consensus size: 142
61814248 CCCTTCGGGA
* * * * * * * *
61814258 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCGGCCCTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
61814322 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
61814387 CGGCCATTAGGC
131 CGGCCATTAGGC
* * *
61814399 CTTATCACATATATATACAGTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
*
61814463 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
61814528 ATCGGCTATTAGGC
129 ATCGGCCATTAGGC
61814542 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
61814607 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
61814672 TTGGCCATTCGGC
130 TCGGCCATTAGGC
61814685 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
61814750 ACTTTCACATT
65 ACTTTCACATT
61814761 TATTCAAATA
Statistics
Matches: 340, Mismatches: 18, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
141 52 0.15
143 288 0.85
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:61814581 original size:190 final size:190
Alignment explanation
Indices: 61814258--61814760 Score: 889
Period size: 190 Copynumber: 2.6 Consensus size: 190
61814248 CCCTTCGGGA
* * * * * *
61814258 CTTATCACATTTATACACTTTCACATCCATCACGTTGACCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
61814323 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
61814388 GGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
61814448 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
61814513 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
61814578 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
61814638 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
61814703 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATT
61814761 TATTCAAATA
Statistics
Matches: 296, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
190 277 0.94
192 19 0.06
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:61814647 original size:22 final size:22
Alignment explanation
Indices: 61814619--61814694 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
61814609 TTTCACATTC
61814619 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
61814641 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
61814665 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
61814688 ATCACAT
1 ATCACAT
61814695 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:61818500 original size:19 final size:19
Alignment explanation
Indices: 61818476--61818521 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
61818466 TTTTGGGCTT
*
61818476 AATGGGCCGAAAATAGGCC
1 AATGGGCCGAAAACAGGCC
61818495 AATGGGCCGAAAACAGGCC
1 AATGGGCCGAAAACAGGCC
61818514 AATGGGCC
1 AATGGGCC
61818522 AACGGGCCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.35, C:0.24, G:0.33, T:0.09
Consensus pattern (19 bp):
AATGGGCCGAAAACAGGCC
Found at i:61823600 original size:6 final size:6
Alignment explanation
Indices: 61823589--61823710 Score: 244
Period size: 6 Copynumber: 20.3 Consensus size: 6
61823579 GCATATGTTG
61823589 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
61823637 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
61823685 GTATAT GTATAT GTATAT GTATAT GT
1 GTATAT GTATAT GTATAT GTATAT GT
61823711 GGTTATTCTC
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 116 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
GTATAT
Found at i:61830545 original size:6 final size:6
Alignment explanation
Indices: 61830515--61830602 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
61830505 AAGAAACATT
* * * *
61830515 ATCAGA AGT-AGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA A-TCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
*
61830564 ATCAGA ATCAGT ATCAGTTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAG--A ATCAGA ATCAGA ATCAGA AT
61830603 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:61830570 original size:25 final size:25
Alignment explanation
Indices: 61830536--61830602 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
61830526 AATCAAAATG
* *
61830536 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
61830561 AGAATCAGAATCAGTATCAGTTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
61830586 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
61830603 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:61830817 original size:27 final size:27
Alignment explanation
Indices: 61830720--61830827 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
61830710 AGCATGGCTG
** * *
61830720 CCAG-AACAGATATTGTGATAGAGTCA
1 CCAGAAACAGATATTGTGGCAAAGCCA
* *
61830746 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGGCAAAGCCA
*
61830773 CCAG-AACAGATATTTGTGGCATAGCCA
1 CCAGAAACAGATA-TTGTGGCAAAGCCA
* *
61830800 CCAGAAACATATAATGTGGCAAAGCCA
1 CCAGAAACAGATATTGTGGCAAAGCCA
61830827 C
1 C
61830828 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 11 0.16
27 52 0.74
28 7 0.10
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAAAGCCA
Found at i:61830818 original size:54 final size:53
Alignment explanation
Indices: 61830720--61830827 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 53
61830710 AGCATGGCTG
* * * * *
61830720 CCAGAACAGATATTGTGATAGAGTCACCAGATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
* * *
61830773 CCAGAACAGATATTTGTGGCATAGCCACCAGAAACATATAATGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
61830827 C
1 C
61830828 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
53 12 0.26
54 34 0.74
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
Found at i:61831014 original size:22 final size:22
Alignment explanation
Indices: 61830986--61831049 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
61830976 GCAAATACGT
*
61830986 TTGGCACACAGCCATAATCAAG
1 TTGGCACAAAGCCATAATCAAG
* * *
61831008 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAAG
*
61831030 TTGACACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
61831050 GAAGGCTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Found at i:61831496 original size:27 final size:27
Alignment explanation
Indices: 61831466--61831573 Score: 137
Period size: 27 Copynumber: 4.0 Consensus size: 27
61831456 AGGGCAAAAT
* * **
61831466 GGTAATTTTACCCCACAAGGGTATCCC
1 GGTAATTCTACCCTACAAGGGTATTTC
61831493 GGTAATTCTACCCTAC-AGGCGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
61831520 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
61831547 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
61831574 AATAATTTTG
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
26 3 0.04
27 65 0.92
28 3 0.04
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:61831532 original size:54 final size:53
Alignment explanation
Indices: 61831470--61831573 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 53
61831460 CAAAATGGTA
61831470 ATTTTACCCCACAAGGGTATCCCGGTAATTCTACCCTACAGGCGTATTTCGGT
1 ATTTTACCCCACAAGGGTATCCCGGTAATTCTACCCTACAGGCGTATTTCGGT
* ** * *
61831523 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
1 ATTT-TACCCCACAAGGGTATCCCGGTAATTCTACCCTACAGGCGTATTTC
61831574 AATAATTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 41 0.91
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATCCCGGTAATTCTACCCTACAGGCGTATTTCGGT
Found at i:61831703 original size:26 final size:27
Alignment explanation
Indices: 61831565--61831953 Score: 368
Period size: 27 Copynumber: 14.6 Consensus size: 27
61831555 TACCCTATAG
* **
61831565 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*** * * * *
61831592 GGGTAAAACGGTAATTCTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
*
61831619 GGGTACTTTGA-TAATTTTACAAATCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
61831646 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
61831673 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
61831699 CGGTATTTC-GATAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* ** * * *
61831726 GGATATTTGGGTAATTTTATAAACCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
61831753 GGGTA-TT-GGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
61831778 GGGTA-TTCAGTCATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
61831804 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
*
61831831 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
61831858 GGGTATTTTAATAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * *
61831884 CGGTATTTC-GATAATTTTATAAACCGG
1 GGGTATTTCAG-TAATTTTACAAATCGA
* * *
61831911 GGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTA-TTTCAGTAATTTTACAAATCGA
61831937 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
61831954 GGTAAACTAA
Statistics
Matches: 298, Mismatches: 50, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
25 25 0.08
26 85 0.29
27 182 0.61
28 6 0.02
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:61831717 original size:53 final size:54
Alignment explanation
Indices: 61831565--61831953 Score: 352
Period size: 53 Copynumber: 7.3 Consensus size: 54
61831555 TACCCTATAG
* ** *** * * * *
61831565 GGGTATTTCAATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
*
61831619 GGGTACTTTGA-TAATTTTACAAATCGAGGGTATTTC-AGTAATTTTACAAATCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATCGA
*
61831673 GGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
* ** * * * * *
61831726 GGATATTTGGGTAATTTTATAAACCGGGGGTA-TT-GGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
* *
61831778 GGGTA-TTCAGTCATTTTACAAATCGAGGGTATTTC-AGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATC-GA
* **
61831831 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAATAATTTTAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
* * * * * * *
61831884 CGGTATTTC-GATAATTTTATAAACCGGGGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTATTTCAG-TAATTTTACAAATCGAGGGTA-TTTCGATAATTTTACAAATCGA
61831937 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
61831954 GGTAAACTAA
Statistics
Matches: 275, Mismatches: 44, Indels: 33
0.78 0.12 0.09
Matches are distributed among these distances:
51 20 0.07
52 24 0.09
53 123 0.45
54 103 0.37
55 5 0.02
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGA
Found at i:61831740 original size:80 final size:79
Alignment explanation
Indices: 61831613--61831953 Score: 374
Period size: 80 Copynumber: 4.3 Consensus size: 79
61831603 TAATTCTATA
* *
61831613 AATCGGGGGTACTTT-GATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGT
1 AATCGAGGGTA-TTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAGGGT
*
61831677 ATTTCAGTAATTTTAC
65 ATTT-GGTAATTTTAC
* * ** * *
61831693 AATCGACGGTATTTCGATAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTA
1 AATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAGGGTA
61831758 -TTGGTAATTTTAC
66 TTTGGTAATTTTAC
* * *
61831771 AAGTCGAGGGTA-TTC-AGTCATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGG
1 AA-TCGAGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAGGG
61831834 TATTTCGGTAATTTTAC
64 TATTT-GGTAATTTTAC
** * * *
61831851 AAATCGAGGGTATTTTAATAATTTTAC-AATCGACGGTATTTC-GATAATTTTATAAACCGGGGG
1 -AATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG-TAATTTTACAAACCGAGGG
61831914 TACTTTGGTAATTTTAC
64 TA-TTTGGTAATTTTAC
*
61831931 AA-CTGGGGGTATTTC-AGTAATTT
1 AATC-GAGGGTATTTCGA-TAATTT
61831954 GGTAAACTAA
Statistics
Matches: 222, Mismatches: 27, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.00
78 57 0.26
79 33 0.15
80 115 0.52
81 15 0.07
82 1 0.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (79 bp):
AATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAGGGTA
TTTGGTAATTTTAC
Found at i:61831809 original size:105 final size:104
Alignment explanation
Indices: 61831630--61831890 Score: 321
Period size: 105 Copynumber: 2.5 Consensus size: 104
61831620 GGTACTTTGA
*
61831630 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAA
1 TAATTTTACAAACCGAGGGTATTT-AGTAATTTTAC-AATCGAGGGTA-TTCAGTAATTTTACAA
*
61831695 TCGACGGTATTTC-GATAATTTTACAAA-TCGAGGATATTTGGG
63 TCGACGGTATTTCAG-TAATTTTACAAACT-GAGGATATTTCGG
* * * *
61831737 TAATTTTATAAACCGGGGGTA-TTGGTAATTTTACAAGTCGAGGGTATTCAGTCATTTTACAAAT
1 TAATTTTACAAACCGAGGGTATTTAGTAATTTTACAA-TCGAGGGTATTCAGTAATTTTAC-AAT
* * *
61831801 CGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGG
64 CGACGGTATTTCAGTAATTTTACAAACTGAGGATATTTCGG
* * *
61831842 TAATTTTACAAATCGAGGGTATTTTAATAATTTTACAATCGACGGTATT
1 TAATTTTACAAACCGAGGGTA-TTTAGTAATTTTACAATCGAGGGTATT
61831891 TCGATAATTT
Statistics
Matches: 133, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
104 15 0.11
105 73 0.55
106 14 0.11
107 31 0.23
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (104 bp):
TAATTTTACAAACCGAGGGTATTTAGTAATTTTACAATCGAGGGTATTCAGTAATTTTACAATCG
ACGGTATTTCAGTAATTTTACAAACTGAGGATATTTCGG
Found at i:61832038 original size:27 final size:27
Alignment explanation
Indices: 61832000--61832051 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
61831990 GAATGGGCTT
61832000 AAGCCCTTCTCGGCCCAAATCGGCCTA
1 AAGCCCTTCTCGGCCCAAATCGGCCTA
*
61832027 AAGCCCTTCTCGGCCCAAATGGGCC
1 AAGCCCTTCTCGGCCCAAATCGGCC
61832052 CACACGCTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.40, G:0.21, T:0.17
Consensus pattern (27 bp):
AAGCCCTTCTCGGCCCAAATCGGCCTA
Found at i:61835267 original size:19 final size:18
Alignment explanation
Indices: 61835227--61835267 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
61835217 AATATTATAC
*
61835227 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
61835245 ATTTCAATTTTCACACTAT
1 ATTTCAA-TTTCACACTAA
61835264 ATTT
1 ATTT
61835268 TGCTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:61840791 original size:50 final size:50
Alignment explanation
Indices: 61840665--61840862 Score: 189
Period size: 50 Copynumber: 3.9 Consensus size: 50
61840655 TTGTGTTCAA
** * * * * *
61840665 AACCATCTATTACACATAGTGGCCTGCACTTAGTACCACACATGTGATCG
1 AACCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGTGACCT
* * ** * *
61840715 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACATATGCGACCT
1 AA-CCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGTGACCT
* *
61840766 AACCATCTGGTACACATAGTAGCTTGCCCTTAGTACTACACACGTGACCT
1 AACCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGTGACCT
* *** *
61840816 AAAACCATTTTAAACACATAGTAGCTTGCACATAGTACTACACATGT
1 --AACCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGT
61840863 TCTCACAATG
Statistics
Matches: 117, Mismatches: 28, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
50 42 0.36
51 37 0.32
52 38 0.32
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (50 bp):
AACCATCTGGTACACATAGTAGCTTGCACTTAGTACTACACATGTGACCT
Found at i:61840842 original size:52 final size:50
Alignment explanation
Indices: 61840730--61840859 Score: 161
Period size: 52 Copynumber: 2.6 Consensus size: 50
61840720 ATCGGGTATG
* * **
61840730 CATAGTAGCTTGCACTTAGTACTACATATGCGACCTAACCATCTGGTACA
1 CATAGTAGCTTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
* * * *
61840780 CATAGTAGCTTGCCCTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCTTGCACTTAGTACTACACACGCGACCT--AACCATCTGAAACA
*
61840832 CATAGTAGCTTGCACATAGTACTACACA
1 CATAGTAGCTTGCACTTAGTACTACACA
61840860 TGTTCTCACA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 32 0.47
52 36 0.53
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (50 bp):
CATAGTAGCTTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
Found at i:61844318 original size:37 final size:37
Alignment explanation
Indices: 61844267--61844341 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
61844257 TTGCTTATAT
* * *
61844267 TTTTCTAGACTTAATTTGAGTTTTTGGACCCTTCTAA
1 TTTTCTAGAATTAATTTGAGTTTTTGAACCCTCCTAA
61844304 TTTTCTAGAATTAATTTGAGTTTTTGAACCCTCCTAA
1 TTTTCTAGAATTAATTTGAGTTTTTGAACCCTCCTAA
61844341 T
1 T
61844342 AATCTTTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (37 bp):
TTTTCTAGAATTAATTTGAGTTTTTGAACCCTCCTAA
Found at i:61852781 original size:79 final size:81
Alignment explanation
Indices: 61852645--61852827 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
61852635 TCGAATGATG
* *
61852645 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
61852709 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
61852724 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
61852786 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
61852804 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
61852828 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:61852843 original size:40 final size:40
Alignment explanation
Indices: 61852646--61852829 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
61852636 CGAATGATGT
* * * *
61852646 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
61852686 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
61852726 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
61852764 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
61852805 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
61852830 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:61852851 original size:79 final size:79
Alignment explanation
Indices: 61852698--61852862 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
61852688 GGACTAAGAT
* **
61852698 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
61852763 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
61852777 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
61852840 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
61852856 CCGAAGG
1 CCGAAGG
61852863 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:61860970 original size:79 final size:81
Alignment explanation
Indices: 61860834--61861016 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
61860824 TCGAATGATG
* *
61860834 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
61860898 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
61860913 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
61860975 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
61860993 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
61861017 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:61861032 original size:40 final size:40
Alignment explanation
Indices: 61860835--61861018 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
61860825 CGAATGATGT
* * * *
61860835 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
61860875 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
61860915 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
61860953 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
61860994 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
61861019 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:61861040 original size:79 final size:79
Alignment explanation
Indices: 61860887--61861051 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
61860877 GGACTAAGAT
* **
61860887 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
61860952 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
61860966 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
61861029 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
61861045 CCGAAGG
1 CCGAAGG
61861052 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:61875274 original size:27 final size:27
Alignment explanation
Indices: 61875222--61875274 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
61875212 GACCCCGATT
**
61875222 TGTAAAATTATCGAAATACCTTTGTAG
1 TGTAAAATTATCGAAATACCCCTGTAG
*
61875249 TGTAAAATTATCGTAATACCCCTGTA
1 TGTAAAATTATCGAAATACCCCTGTA
61875275 TGGTAGAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCCTGTAG
Found at i:61891228 original size:28 final size:28
Alignment explanation
Indices: 61891188--61891243 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
61891178 CAATAAGGAG
*
61891188 TTTCCAATCATGGTACTTCTTCTGGACT
1 TTTCCAATCATGGTACTTCTTCTAGACT
61891216 TTTCCAATCATGGTACTTCTTCTAGACT
1 TTTCCAATCATGGTACTTCTTCTAGACT
61891244 GACTCCATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.43
Consensus pattern (28 bp):
TTTCCAATCATGGTACTTCTTCTAGACT
Found at i:61892293 original size:13 final size:13
Alignment explanation
Indices: 61892275--61892299 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61892265 TTTTTGACTC
61892275 AAAAGTGCTTTTT
1 AAAAGTGCTTTTT
61892288 AAAAGTGCTTTT
1 AAAAGTGCTTTT
61892300 CAACCCAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
AAAAGTGCTTTTT
Found at i:61893573 original size:137 final size:138
Alignment explanation
Indices: 61893416--61893698 Score: 460
Period size: 138 Copynumber: 2.1 Consensus size: 138
61893406 AAGAAGATAG
* *
61893416 ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACTGGA-TTATT
1 ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
* *
61893480 AATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTCT
66 AATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTCT
61893545 TGGAAAGA
131 TGGAAAGA
* * *
61893553 ATATAATTACTATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
* * *
61893618 AATATAAAAAATTATATTAATTAATTTCTGTCAAAATATAAAAGACGTGGAAATTAATATTCTTT
66 AATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTCT
*
61893683 TTGAAAGA
131 TGGAAAGA
61893691 ATATAATT
1 ATATAATT
61893699 CATTTTTCTA
Statistics
Matches: 134, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
137 54 0.40
138 80 0.60
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (138 bp):
ATATAATTAATATATCAATTTGATTCATACAAAATATCAATTGTATATATTTTACCGAATTTATT
AATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTCT
TGGAAAGA
Found at i:61893766 original size:75 final size:75
Alignment explanation
Indices: 61893680--61893823 Score: 261
Period size: 75 Copynumber: 1.9 Consensus size: 75
61893670 ATTAATATTC
*
61893680 TTTTTGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
1 TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
61893745 TCCTATAATA
66 TCCTATAATA
* *
61893755 TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTGTTCTCTATTAATAAGGGAATAA
1 TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
61893820 TCCT
66 TCCT
61893824 GGTTTTCCTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 66 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (75 bp):
TTTTGGAAAGAATATAATTCATTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGAGAATAA
TCCTATAATA
Found at i:61896329 original size:27 final size:27
Alignment explanation
Indices: 61896299--61896374 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
61896289 TCTCTTATGA
61896299 ACCTTGTGTTTAGTGTCTCGATGGACT
1 ACCTTGTGTTTAGTGTCTCGATGGACT
*
61896326 ACCTTGTGTTTAGTGTCTCGGTGGACT
1 ACCTTGTGTTTAGTGTCTCGATGGACT
** * *
61896353 ACCTCATGTTTATTGTCCCGAT
1 ACCTTGTGTTTAGTGTCTCGAT
61896375 AAGCTATTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.14, C:0.21, G:0.24, T:0.41
Consensus pattern (27 bp):
ACCTTGTGTTTAGTGTCTCGATGGACT
Found at i:61900578 original size:51 final size:50
Alignment explanation
Indices: 61900509--61900631 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 50
61900499 CCGGTGGCTG
*
61900509 CACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAGTGGCATT
1 CACATAGTACCACACTTGTAGTCAAAGCTACC-TCTTCACAAAGTGGCATT
* * * * * *
61900560 CACATAGTATCACACTTGT-GACCAAGCTATCTCTTCTCAAAGTGGCCTT
1 CACATAGTACCACACTTGTAGTCAAAGCTACCTCTTCACAAAGTGGCATT
*
61900609 CAGATAGTACCACACTTG-AGTCA
1 CACATAGTACCACACTTGTAGTCA
61900632 CTAGTGATAT
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
49 34 0.57
50 9 0.15
51 17 0.28
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (50 bp):
CACATAGTACCACACTTGTAGTCAAAGCTACCTCTTCACAAAGTGGCATT
Found at i:61905531 original size:54 final size:54
Alignment explanation
Indices: 61905368--61905534 Score: 210
Period size: 54 Copynumber: 3.1 Consensus size: 54
61905358 AGCATGGCTG
* * * *
61905368 CCAGATACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATATATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
* * ** * * *
61905423 ACATAACTTATATATGTGGTAGAGCCACCAGATTAAATAATCGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
61905477 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
61905531 CCAG
1 CCAG
61905535 GACGCTTCCT
Statistics
Matches: 93, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
54 73 0.78
55 20 0.22
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCA
Found at i:61905534 original size:27 final size:27
Alignment explanation
Indices: 61905376--61905534 Score: 137
Period size: 27 Copynumber: 5.9 Consensus size: 27
61905366 TGCCAGATAC
* * *
61905376 AGATAA-TGTGACAGAGTCACCAGATAC
1 AGATAATTGTGGCAGAGCCACCAGAT-T
* *
61905403 AGATAATTGTGGCAGAGCCAACATAACTT
1 AGATAATTGTGGCAGAGCCACCA-GA-TT
* *
61905432 ATAT-A-TGTGGTAGAGCCACCAGATT
1 AGATAATTGTGGCAGAGCCACCAGATT
* * * **
61905457 AAATAATCGTGGCATAGCCACCAGAAC
1 AGATAATTGTGGCAGAGCCACCAGATT
61905484 AGAT-ATATGTGGCAGAGCCACCAGATT
1 AGATAAT-TGTGGCAGAGCCACCAGATT
*
61905511 AGATAATTGTGGCATAGCCACCAG
1 AGATAATTGTGGCAGAGCCACCAG
61905535 GACGCTTCCT
Statistics
Matches: 104, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
25 5 0.05
26 4 0.04
27 74 0.71
28 16 0.15
29 4 0.04
30 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.21
Consensus pattern (27 bp):
AGATAATTGTGGCAGAGCCACCAGATT
Found at i:61916733 original size:43 final size:42
Alignment explanation
Indices: 61916672--61916826 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
61916662 GGGGTGTTAC
* *
61916672 AGACCATGTTTGGGACATTGGCATTGTATTGTTATTACGTGTA
1 AGACCATGTCTGGGACATTGGCATTGTATTG-TATTACATGTA
*
61916715 AGACCATGTCTGGGACATTGGCATCAT-TATATG-ATTTCATGTA
1 AGACCATGTCTGGGACATTGGCAT--TGTAT-TGTATTACATGTA
* * *
61916758 AGACCATGTCTGGGACATTGGTATCG-ATTGTGATAACATGTA
1 AGACCATGTCTGGGACATTGGCATTGTATTGT-ATTACATGTA
* *
61916800 AGACCATATCTGGGATA-TGGCATTGTA
1 AGACCATGTCTGGGACATTGGCATTGTA
61916827 CGAGCTATAT
Statistics
Matches: 94, Mismatches: 11, Indels: 15
0.78 0.09 0.12
Matches are distributed among these distances:
40 2 0.02
41 8 0.09
42 24 0.26
43 54 0.57
44 3 0.03
45 3 0.03
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (42 bp):
AGACCATGTCTGGGACATTGGCATTGTATTGTATTACATGTA
Found at i:61918453 original size:40 final size:40
Alignment explanation
Indices: 61918376--61918512 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 40
61918366 ACCCAAGTAT
61918376 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
61918415 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * *
61918455 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
61918495 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
61918513 TTATCATCTG
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.15
40 68 0.83
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:61931833 original size:52 final size:52
Alignment explanation
Indices: 61931773--61931880 Score: 198
Period size: 52 Copynumber: 2.1 Consensus size: 52
61931763 GAATTGGATT
61931773 TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
1 TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
* *
61931825 TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTGTCGATTATATTTTGA
1 TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
61931877 TTTA
1 TTTA
61931881 TTCTCAAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.27, C:0.07, G:0.18, T:0.48
Consensus pattern (52 bp):
TTTAGACCATACTTAAATAAGTTTGTGGTTGTGTTTATCGATAATATTTTGA
Found at i:61933588 original size:12 final size:12
Alignment explanation
Indices: 61933571--61933595 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
61933561 TGACATCTCG
61933571 TATGATATTTGA
1 TATGATATTTGA
61933583 TATGATATTTGA
1 TATGATATTTGA
61933595 T
1 T
61933596 GCATTTCAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TATGATATTTGA
Found at i:61933891 original size:28 final size:27
Alignment explanation
Indices: 61933851--61933920 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 27
61933841 ATAGTAAGTC
61933851 CGCACACTTAGTGCTTAATAC-TCAAACT
1 CGCACACTTAGTGC-T-ATACATCAAACT
*
61933879 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATAC-ATCAAACT
61933907 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61933921 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 4 0.10
27 1 0.03
28 34 0.87
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATACATCAAACT
Found at i:61945572 original size:48 final size:48
Alignment explanation
Indices: 61945417--61945789 Score: 356
Period size: 48 Copynumber: 7.7 Consensus size: 48
61945407 AAAGGTTAAG
* *
61945417 ATGCCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCTCATAT--
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* * * * * * * *
61945463 ATCGGCACCGATACCATGTTCCAAACATGGTCTTACACTAGCCCACGTGTCG
1 AT--G--CCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* * * * * *
61945515 AGGCTGATGCCATGTCCCAGATATAGTCTTACATTCGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* ** * * *
61945563 ATGCCGATGCCATGTTCCAAACATGGTCTTACGTTGGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* * *
61945611 AGGCTGATGCCATGTCCCAAACATGGTCTTACACTCGCTTTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* * * * *
61945659 ATACCGATGCCATGTTCCAAACATGGTCTTGCACTGGCT-TACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCT-CATATCA
* * * *
61945707 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
* *
61945755 ATGCCGATGTCATGTTCCAAACATGGTCTTACACT
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACT
61945790 GGATCACATA
Statistics
Matches: 259, Mismatches: 60, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
46 2 0.01
47 1 0.00
48 218 0.84
49 1 0.00
50 36 0.14
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTCGCTCTCATATCA
Found at i:61945588 original size:96 final size:96
Alignment explanation
Indices: 61945422--61945799 Score: 499
Period size: 96 Copynumber: 3.9 Consensus size: 96
61945412 TTAAGATGCC
* * * *
61945422 GATGCCATGCCCCAAACATGGTCTTACACTGGCTCTCATAT--ATCGGCACCGATACCATGTTCC
1 GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAAT--G--CCGATGCCATGTTCC
* * * *
61945485 AAACATGGTCTTACACTAGCCCACGTGTCGAGGCT
62 AAACATGGTCTTACACTGGCTCACATATCGAGGCT
* * *
61945520 GATGCCATGTCCCAGATATAGTCTTACATTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
**
61945585 ATGGTCTTACGTTGGCTCACATATCGAGGCT
66 ATGGTCTTACACTGGCTCACATATCGAGGCT
* * *
61945616 GATGCCATGTCCCAAACATGGTCTTACACTCGCTTTCATATCAATACCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
* * *
61945681 ATGGTCTTGCACTGGCTTACATATCGAGGCC
66 ATGGTCTTACACTGGCTCACATATCGAGGCT
* * *
61945712 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCAATGCCGATGTCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
*
61945777 ATGGTCTTACACTGGATCACATA
66 ATGGTCTTACACTGGCTCACATA
61945800 ACCCTAGTAT
Statistics
Matches: 245, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
96 207 0.84
98 36 0.15
100 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTCGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTGGCTCACATATCGAGGCT
Found at i:61953291 original size:48 final size:48
Alignment explanation
Indices: 61953136--61953507 Score: 322
Period size: 48 Copynumber: 7.7 Consensus size: 48
61953126 AAAAGGGTAA
* *
61953136 GATGTCGATTCCATGTCCCAAACATGGTCTTACACTGACTCTCATATATC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTACTCTC--ATATC
* * * * * * * * *
61953186 AATGTCGATTCTATGTTCCAAACATGGTCTTACAC-TAGCCCACTTGTT
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTA-CTCTCATATC
* * *
61953234 GAGGTCGATGCCATGTCCCAAATATAGTCTTACACTTACTCTCATATC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTACTCTCATATC
* * * *
61953282 GATGCCGATGCCATG-CTCCAAACATGGTCTTATA-TTGGCTCACATATC
1 GATGTCGATGCCATGTC-CCAAACATGGTCTTACACTT-ACTCTCATATC
* * *
61953330 GAGGCCGATGCCATGTCCCAGACATGGTCTTACAC-TAGCTCTCATATC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTA-CTCTCATATC
* * * ** ** * *
61953378 AATGCCAATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTACTCTCATATC
* * * *
61953426 GAGGGCGATGCCATATCCCAAACATGGTCTTACAC-TAGCTCTCTTATC
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTA-CTCTCATATC
* *
61953474 AATGTCGATGCCATGTTCCAAACATGGTCTTACA
1 GATGTCGATGCCATGTCCCAAACATGGTCTTACA
61953508 GTGGATCACA
Statistics
Matches: 253, Mismatches: 60, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
47 3 0.01
48 211 0.83
49 4 0.02
50 35 0.14
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (48 bp):
GATGTCGATGCCATGTCCCAAACATGGTCTTACACTTACTCTCATATC
Found at i:61953345 original size:96 final size:96
Alignment explanation
Indices: 61953141--61953519 Score: 474
Period size: 96 Copynumber: 3.9 Consensus size: 96
61953131 GGTAAGATGT
* * * *
61953141 CGATTCCATGTCCCAAACATGGTCTTACACT-GACTCTCATATATCAATGTCGATTCTATGTTCC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTC--ATATCAATGCCGATGCCATGTTCC
* * * * * *
61953205 AAACATGGTCTTACACTAGCCCACTTGTTGAGGT
63 AAACATGGTCTTACACTGGCTCACATATCGAGGC
* * * *
61953239 CGATGCCATGTCCCAAATATAGTCTTACACTTA-CTCTCATATCGATGCCGATGCCATGCTCCAA
1 CGATGCCATGTCCCAAACATGGTCTTACAC-TAGCTCTCATATCAATGCCGATGCCATGTTCCAA
* *
61953303 ACATGGTCTTATATTGGCTCACATATCGAGGC
65 ACATGGTCTTACACTGGCTCACATATCGAGGC
* * *
61953335 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCAATGCCATGTTTCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
* *
61953400 CATGGTCTTACACTGGCTCACATGTCGAGGG
66 CATGGTCTTACACTGGCTCACATATCGAGGC
* * *
61953431 CGATGCCATATCCCAAACATGGTCTTACACTAGCTCTCTTATCAATGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
* *
61953496 CATGGTCTTACAGTGGATCACATA
66 CATGGTCTTACACTGGCTCACATA
61953520 ACCCTAATGT
Statistics
Matches: 242, Mismatches: 36, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
95 2 0.01
96 207 0.86
98 32 0.13
99 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACATATCGAGGC
Found at i:61953658 original size:21 final size:19
Alignment explanation
Indices: 61953617--61953659 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
61953607 AACAAAATCG
* *
61953617 ATAATTTCATGCAATATCA
1 ATAATTTAATGCAATAACA
61953636 ATAATTTAATGCATAATAACA
1 ATAATTTAATGC--AATAACA
61953657 ATA
1 ATA
61953660 GAGTTGTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
21 9 0.45
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.35
Consensus pattern (19 bp):
ATAATTTAATGCAATAACA
Found at i:61957208 original size:15 final size:15
Alignment explanation
Indices: 61957188--61957239 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
61957178 ACTACAAAAC
61957188 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
61957203 ATTTATAATAGTAATAAAT
1 ATTTAT--TATTAAT--AT
*
61957222 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
61957237 ATT
1 ATT
61957240 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
17 11 0.37
19 8 0.27
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:61957306 original size:19 final size:19
Alignment explanation
Indices: 61957272--61957311 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
61957262 ATGTGAATAA
61957272 TATTATTTAAAATTATTAT
1 TATTATTTAAAATTATTAT
61957291 TATT-TTTAAAATTTATTAT
1 TATTATTTAAAA-TTATTAT
61957310 TA
1 TA
61957312 AAATAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTATTTAAAATTATTAT
Found at i:61973008 original size:18 final size:18
Alignment explanation
Indices: 61972985--61973024 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
61972975 TCATTGTCGA
61972985 GTTTATCCTTGATAAAAT
1 GTTTATCCTTGATAAAAT
* **
61973003 GTTTATCTTTTTTAAAAT
1 GTTTATCCTTGATAAAAT
61973021 GTTT
1 GTTT
61973025 GATTCTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (18 bp):
GTTTATCCTTGATAAAAT
Found at i:61980197 original size:3 final size:3
Alignment explanation
Indices: 61980189--61980223 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
61980179 CTGTGGTGAA
* *
61980189 ATT ATT ATT ATT ATT ATT ATT ATT GTT ATC ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
61980224 CATTTTTGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:61992883 original size:82 final size:83
Alignment explanation
Indices: 61992737--61992905 Score: 295
Period size: 82 Copynumber: 2.0 Consensus size: 83
61992727 TCAATGATAT
61992737 ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
1 ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
*
61992802 ATCTACCATAAATCATTA
66 AACTACCATAAATCATTA
*
61992820 ATTT-CTCTTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
1 ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
* *
61992884 AACTACCTTAAATCATTC
66 AACTACCATAAATCATTA
61992902 ATTT
1 ATTT
61992906 GAAAATAAGT
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 78 0.95
83 4 0.05
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (83 bp):
ATTTCCTCCTAAACAAGAACATACCTTTCTTACTCCTAGTAACTTCAACTCCAATAACATATCTC
AACTACCATAAATCATTA
Found at i:61999036 original size:16 final size:16
Alignment explanation
Indices: 61999005--61999054 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
61998995 AGATTTAATT
* *
61999005 TTGTAATCTTACAAGA
1 TTGTAATATTAGAAGA
61999021 TCT-TAATATTAGAAGA
1 T-TGTAATATTAGAAGA
61999037 TTGTAATATTAGAAGA
1 TTGTAATATTAGAAGA
61999053 TT
1 TT
61999055 TGATTTTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 1 0.03
16 28 0.93
17 1 0.03
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (16 bp):
TTGTAATATTAGAAGA
Found at i:62004587 original size:31 final size:31
Alignment explanation
Indices: 62004552--62004615 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
62004542 TCGGTCGTGC
* *
62004552 TCACTGTTGTTGTCCGCTTCTATTCTTTCTT
1 TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
62004583 TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
1 TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
62004614 TC
1 TC
62004616 TTTATTTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.06, C:0.30, G:0.11, T:0.53
Consensus pattern (31 bp):
TCACTGTTGTTGCCCCCTTCTATTCTTTCTT
Found at i:62010324 original size:21 final size:22
Alignment explanation
Indices: 62010287--62010327 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
62010277 TAGAAGATCC
62010287 ATTTGCTGGAGCAGATGAAGAT
1 ATTTGCTGGAGCAGATGAAGAT
62010309 ATTTG-TGGAG-ACGATGAAG
1 ATTTGCTGGAGCA-GATGAAG
62010328 TGGAGTTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 12 0.67
22 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (22 bp):
ATTTGCTGGAGCAGATGAAGAT
Found at i:62025859 original size:15 final size:16
Alignment explanation
Indices: 62025823--62025865 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
62025813 CACATATACA
*
62025823 CATAATCTCATGAGTT
1 CATAATCACATGAGTT
62025839 CATAATCACAT-AGTT
1 CATAATCACATGAGTT
* *
62025854 CCTAATGACATG
1 CATAATCACATG
62025866 TCACATTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (16 bp):
CATAATCACATGAGTT
Found at i:62027937 original size:47 final size:46
Alignment explanation
Indices: 62027823--62027953 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 46
62027813 GTGCGAATGA
* * *
62027823 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAATGAGGAGT
1 TACCTTGATTT-GCTACGGGCCATGGTATAGGTA-CTCAAGGAGAAGT
* *
62027871 TACCTTGATTTAGCTACGGGCCATGGTATAGGTACTCCAGGATAAGT
1 TACCTTGATTT-GCTACGGGCCATGGTATAGGTACTCAAGGAGAAGT
62027918 TACCTTGATTTGCCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTG-CTACGGGCCATGGTATAGGTACT
62027954 TATTGATTGT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 42 0.55
48 33 0.43
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (46 bp):
TACCTTGATTTGCTACGGGCCATGGTATAGGTACTCAAGGAGAAGT
Found at i:62027971 original size:47 final size:46
Alignment explanation
Indices: 62027820--62027972 Score: 145
Period size: 47 Copynumber: 3.2 Consensus size: 46
62027810 TGAGTGCGAA
* *
62027820 TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAATGAGGAG
1 TGATACCTTGATTT-GCTACGGGCCATGGTATAGGTACTT--ATGA-TAG
* *
62027870 T--TACCTTGATTTAGCTACGGGCCATGGTATAGGTACTCCAGGATAAG
1 TGATACCTTGATTT-GCTACGGGCCATGGTATAGGTACT-TATGAT-AG
*
62027917 T--TACCTTGATTTGCCTACGGGCCATGGTATAGGTACTTATTGATTG
1 TGATACCTTGATTTG-CTACGGGCCATGGTATAGGTACTTA-TGATAG
62027963 TGAT-CCTTGA
1 TGATACCTTGA
62027973 GTATCTGACT
Statistics
Matches: 89, Mismatches: 8, Indels: 15
0.79 0.07 0.13
Matches are distributed among these distances:
46 4 0.04
47 49 0.55
48 35 0.39
50 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (46 bp):
TGATACCTTGATTTGCTACGGGCCATGGTATAGGTACTTATGATAG
Found at i:62032301 original size:15 final size:15
Alignment explanation
Indices: 62032269--62032297 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62032259 ATTTTCTATG
62032269 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
62032284 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
62032298 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:62039861 original size:97 final size:91
Alignment explanation
Indices: 62039687--62039907 Score: 212
Period size: 93 Copynumber: 2.4 Consensus size: 91
62039677 AGGGTACGAT
* *
62039687 GCCGACGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCTAAGTCAGTGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTCTCACATCTAAGTCAGTGCCATGTCCCA
** * * *
62039752 GACAGGTTTTACACTGACTTCCATACGTCAA
65 GACAAATCTTACACTGA----CACACCTCAA
* * **
62039783 GGCC-ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTTATCTGTGTC-GATGCCATGTC
1 -GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCA--CATCTAAGTCAG-TGCCATGTC
* *
62039846 TCAGACAAATCTTACATTGACACACCTCAA
62 CCAGACAAATCTTACACTGACACACCTCAA
* *
62039876 GCCGATGCCATATCCCATACAGGTCTTACACT
1 GCCGATGCCATGTCCCAAACAGGTCTTACACT
62039908 AGCTTATATA
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
92 3 0.03
93 34 0.32
95 19 0.18
96 15 0.14
97 34 0.32
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (91 bp):
GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCACATCTAAGTCAGTGCCATGTCCCAG
ACAAATCTTACACTGACACACCTCAA
Found at i:62039933 original size:93 final size:93
Alignment explanation
Indices: 62039779--62039954 Score: 205
Period size: 93 Copynumber: 1.9 Consensus size: 93
62039769 CTTCCATACG
* * * * * *
62039779 TCAAGGCCATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATTTATCTGTGTCGATGCCATG
1 TCAAGGCCATGCCATATCCCAGACAGGTCTTACACTAGCTCTCATATATCTGGGCCAATGCCATG
*
62039844 TCTCAGACAAATCTTACATTGACACACC
66 TCCCAGACAAATCTTACATTGACACACC
*
62039872 TCAA-GCCGATGCCATATCCCATACAGGTCTTACACTAGCT-T-ATATATCTTGAGGCCAATGCC
1 TCAAGGCC-ATGCCATATCCCAGACAGGTCTTACACTAGCTCTCATATATC-TG-GGCCAATGCC
* **
62039934 GTGTCCCAGACATGTCTTACA
63 ATGTCCCAGACAAATCTTACA
62039955 CTGGCTCTCA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
91 6 0.09
92 6 0.09
93 57 0.83
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (93 bp):
TCAAGGCCATGCCATATCCCAGACAGGTCTTACACTAGCTCTCATATATCTGGGCCAATGCCATG
TCCCAGACAAATCTTACATTGACACACC
Found at i:62039941 original size:49 final size:49
Alignment explanation
Indices: 62039880--62040008 Score: 147
Period size: 49 Copynumber: 2.6 Consensus size: 49
62039870 CCTCAAGCCG
* *
62039880 ATGCCATATCCCATACAGGTCTTACACTAGCT-T-ATATATCTTGAG-GCCA
1 ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATATATC--G-GTGCCA
* * * * *
62039929 ATGCCGTGTCCCAGACATGTCTTACACTGGCTCTCATATATCGGTGCCG
1 ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGGTGCCA
62039978 ATGCCATGTCCCAAACAGGTCTTACACTAGC
1 ATGCCATGTCCCAAACAGGTCTTACACTAGC
62040009 ACACACATCA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
48 1 0.01
49 58 0.87
50 1 0.01
51 7 0.10
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGGTGCCA
Found at i:62044754 original size:46 final size:46
Alignment explanation
Indices: 62044704--62044876 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
62044694 TGGTTGAGCA
*
62044704 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
62044750 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
62044797 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
62044843 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
62044877 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:62044857 original size:93 final size:93
Alignment explanation
Indices: 62044701--62044871 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
62044691 GGATGGTTGA
* * *
62044701 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
62044766 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
62044794 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
62044859 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
62044872 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62045138 original size:19 final size:20
Alignment explanation
Indices: 62045101--62045138 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
62045091 ATAAGGTGGT
62045101 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
62045121 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
62045139 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:62052580 original size:24 final size:24
Alignment explanation
Indices: 62052500--62052582 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 24
62052490 ATTTGTCTCT
*
62052500 CATGAGCTTCCCAAT-TTGGCTCT
1 CATGAGCTTCCCAATATTGGCTCA
* * *
62052523 CATGAGCTTTCCGATTAATGGCTCA
1 CATGAGC-TTCCCAATATTGGCTCA
* *
62052548 C-TAGTGCTTCCCAATATTGGCTCG
1 CAT-GAGCTTCCCAATATTGGCTCA
62052572 CATGAGCTTCC
1 CATGAGCTTCC
62052583 TGATTACGGC
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
23 7 0.15
24 28 0.61
25 11 0.24
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (24 bp):
CATGAGCTTCCCAATATTGGCTCA
Found at i:62052605 original size:48 final size:48
Alignment explanation
Indices: 62052496--62052606 Score: 129
Period size: 48 Copynumber: 2.3 Consensus size: 48
62052486 CGTTATTTGT
* * *
62052496 CTCTCATGAGCTTCCCAATTTGGCTCTCATGAGCTTTCCGATTAATGG
1 CTCTTATGAGCTTCCCAATTTGGCTCGCATGAGCTTTCCGATTAACGG
* *
62052544 CTCACTA-GTGCTTCCCAATATTGGCTCGCATGAGC-TTCCTGATT-ACGG
1 CTC-TTATGAGCTTCCCAAT-TTGGCTCGCATGAGCTTTCC-GATTAACGG
62052592 CTCTTATGAGCTTCC
1 CTCTTATGAGCTTCC
62052607 TTTTGCATGG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
47 2 0.04
48 31 0.60
49 19 0.37
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.34
Consensus pattern (48 bp):
CTCTTATGAGCTTCCCAATTTGGCTCGCATGAGCTTTCCGATTAACGG
Found at i:62056459 original size:16 final size:16
Alignment explanation
Indices: 62056438--62056471 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
62056428 AAGGCCCATC
62056438 TACAAAGCATGGCCAA
1 TACAAAGCATGGCCAA
62056454 TACAAAGCATGGCCAA
1 TACAAAGCATGGCCAA
62056470 TA
1 TA
62056472 TAGAATGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.15
Consensus pattern (16 bp):
TACAAAGCATGGCCAA
Found at i:62058083 original size:68 final size:64
Alignment explanation
Indices: 62057869--62058085 Score: 215
Period size: 64 Copynumber: 3.3 Consensus size: 64
62057859 GATAATTTTG
* * *
62057869 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCACTT-TATCTCGTA
1 GCTCTCTTGTACACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTCTATCTCGTA
* ** * * * * * *
62057932 GCTCTCTTATTTACATGGTGTCCTTTACCT-GTAACCACACATGCAACCTAGCTACATCTATCTC
1 GCTCTCTTGTACACATGGTG---TATACATAGT-ATCACCCATGCGACCTAGCTACTTCTATCTC
62057996 GTA
62 GTA
62057999 GCTCTCTTGT-CTACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTC-T-A--TCT
62058063 CGTA
61 CGTA
*
62058067 GCTCTTTTGTACACATGGT
1 GCTCTCTTGTACACATGGT
62058086 ATACATCTCG
Statistics
Matches: 121, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
63 17 0.14
64 26 0.21
65 5 0.04
66 23 0.19
67 26 0.21
68 23 0.19
69 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTCTATCTCGTA
Found at i:62058118 original size:68 final size:68
Alignment explanation
Indices: 62057869--62058085 Score: 179
Period size: 67 Copynumber: 3.3 Consensus size: 68
62057859 GATAATTTTG
* * * *
62057869 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGTGACCTAGCCACTT--T-A--TCT
1 GCTCTCTTGT-CTACATGGTGTATACATAGTATCACACATGCGACCTAGCTACTTCATAATGTCT
62057928 CGTA
65 CGTA
* * * * * * *
62057932 GCTCTCTTATTTACATGGTGTCCTTTACCT-GTAACCACACATGCAACCTAGCTACATC-T-A--
1 GCTCTCTTGTCTACATGGTG---TATACATAGT-ATCACACATGCGACCTAGCTACTTCATAATG
62057992 TCTCGTA
62 TCTCGTA
*
62057999 GCTCTCTTGTCTACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACTTCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTATACATAGTATCACACATGCGACCTAGCTACTTCATAATGTCTC
62058064 GTA
66 GTA
*
62058067 GCTCTTTTGTAC-ACATGGT
1 GCTCTCTTGT-CTACATGGT
62058086 ATACATCTCG
Statistics
Matches: 122, Mismatches: 20, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
63 17 0.14
64 26 0.21
65 5 0.04
66 23 0.19
67 27 0.22
68 23 0.19
69 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (68 bp):
GCTCTCTTGTCTACATGGTGTATACATAGTATCACACATGCGACCTAGCTACTTCATAATGTCTC
GTA
Found at i:62060015 original size:26 final size:26
Alignment explanation
Indices: 62059949--62060021 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
62059939 TATTTTCCCC
*
62059949 AAATTTTATCAAGGTTAAAATTGTCA
1 AAATTTTATCAAGGGTAAAATTGTCA
* *
62059975 AACTTTTACCAAGGGTAAAATTGTCA
1 AAATTTTATCAAGGGTAAAATTGTCA
**
62060001 AAATTTTATTTAGGGTAAAAT
1 AAATTTTATCAAGGGTAAAAT
62060022 AGGGATAGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (26 bp):
AAATTTTATCAAGGGTAAAATTGTCA
Found at i:62061804 original size:29 final size:29
Alignment explanation
Indices: 62061771--62061844 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
62061761 GTTGTGAGAT
* *
62061771 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
62061800 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
62061829 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62061845 CAGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:62064544 original size:16 final size:16
Alignment explanation
Indices: 62064523--62064556 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
62064513 ATCTTTGAGC
62064523 TTGTGTTAGACTATGT
1 TTGTGTTAGACTATGT
62064539 TTGTGTTAGACTATGT
1 TTGTGTTAGACTATGT
62064555 TT
1 TT
62064557 TTCAATTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.06, G:0.24, T:0.53
Consensus pattern (16 bp):
TTGTGTTAGACTATGT
Found at i:62064636 original size:17 final size:18
Alignment explanation
Indices: 62064614--62064655 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
62064604 TTTCTAATAA
62064614 TTTTTATAAATTTA-ATT
1 TTTTTATAAATTTATATT
**
62064631 TTTTTATATTTTTATATT
1 TTTTTATAAATTTATATT
62064649 TTTTTAT
1 TTTTTAT
62064656 GATTGGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTATAAATTTATATT
Found at i:62068531 original size:13 final size:13
Alignment explanation
Indices: 62068512--62068577 Score: 63
Period size: 13 Copynumber: 5.5 Consensus size: 13
62068502 TAGATTTTTT
62068512 CTAAATATTATCA
1 CTAAATATTATCA
* *
62068525 TTAAATA--A-CC
1 CTAAATATTATCA
62068535 CTAAATATTATCA
1 CTAAATATTATCA
*
62068548 CTAAATA--AT-T
1 CTAAATATTATCA
62068558 CTAAATATTATCA
1 CTAAATATTATCA
62068571 CTAAATA
1 CTAAATA
62068578 ATTCAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
10 14 0.34
11 3 0.07
12 3 0.07
13 21 0.51
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:62068579 original size:23 final size:23
Alignment explanation
Indices: 62068510--62068586 Score: 118
Period size: 23 Copynumber: 3.3 Consensus size: 23
62068500 GTTAGATTTT
*
62068510 TTCTAAATATTATCATTAAATAA
1 TTCTAAATATTATCACTAAATAA
**
62068533 CCCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
62068556 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
*
62068579 TTCAAAAT
1 TTCTAAAT
62068587 TTAAAAATTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (23 bp):
TTCTAAATATTATCACTAAATAA
Found at i:62071315 original size:18 final size:18
Alignment explanation
Indices: 62071265--62071315 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
62071255 AATGGTTTAT
*
62071265 GAGTTGTCAGCTTAGTGG
1 GAGTTGTTAGCTTAGTGG
*
62071283 GAGTTGTTGGCTTAGTGG
1 GAGTTGTTAGCTTAGTGG
*
62071301 GAGTTGTTAGTTTAG
1 GAGTTGTTAGCTTAG
62071316 CCTCCTGTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.16, C:0.06, G:0.39, T:0.39
Consensus pattern (18 bp):
GAGTTGTTAGCTTAGTGG
Found at i:62073320 original size:20 final size:20
Alignment explanation
Indices: 62073283--62073322 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
62073273 TATAGGCAGC
*
62073283 CAAATATATCAATTCATACA
1 CAAATATATCAATCCATACA
62073303 CAAATCATATC-ATCCATACA
1 CAAAT-ATATCAATCCATACA
62073323 TAACCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (20 bp):
CAAATATATCAATCCATACA
Found at i:62074074 original size:43 final size:42
Alignment explanation
Indices: 62074027--62074109 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
62074017 TCTTACATGT
*
62074027 AATCAAATATTGATGC-CATTGTCCCAAACAGGGTCTTACACAA
1 AATCAAATA-CGATGCTCA-TGTCCCAAACAGGGTCTTACACAA
* * * *
62074070 AATCATATACGATGCTGATGTCCCAGACATGGTCTTACAC
1 AATCAAATACGATGCTCATGTCCCAAACAGGGTCTTACAC
62074110 GTAAATCTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
42 25 0.74
43 9 0.26
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
AATCAAATACGATGCTCATGTCCCAAACAGGGTCTTACACAA
Found at i:62076747 original size:23 final size:23
Alignment explanation
Indices: 62076721--62076773 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
62076711 CTAATATCCT
*
62076721 TAAATAAC-CTTAAATATTATCAC
1 TAAATAACTC-TAAATATCATCAC
* *
62076744 TAAATAATTCTAAATATCATCGC
1 TAAATAACTCTAAATATCATCAC
62076767 TAAATAA
1 TAAATAA
62076774 TTCAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 25 0.96
24 1 0.04
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.34
Consensus pattern (23 bp):
TAAATAACTCTAAATATCATCAC
Found at i:62076774 original size:23 final size:23
Alignment explanation
Indices: 62076731--62076781 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
62076721 TAAATAACCT
*
62076731 TAAATATTATCACTAAATAATTC
1 TAAATATCATCACTAAATAATTC
*
62076754 TAAATATCATCGCTAAATAATTC
1 TAAATATCATCACTAAATAATTC
*
62076777 AAAAT
1 TAAAT
62076782 TTAAAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAATATCATCACTAAATAATTC
Found at i:62077152 original size:19 final size:22
Alignment explanation
Indices: 62077120--62077159 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
62077110 TTTTTAATTG
62077120 ATTAATGAATTTTTAA-AAAAT
1 ATTAATGAATTTTTAACAAAAT
62077141 ATTAAT-AA-TTTTAACAAAA
1 ATTAATGAATTTTTAACAAAA
62077160 ACTAATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 6 0.33
21 6 0.33
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (22 bp):
ATTAATGAATTTTTAACAAAAT
Found at i:62077159 original size:21 final size:21
Alignment explanation
Indices: 62077120--62077160 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
62077110 TTTTTAATTG
*
62077120 ATTAATGAATTTTTAAAAAAT
1 ATTAATGAATTTTAAAAAAAT
62077141 ATTAAT-AATTTTAACAAAAA
1 ATTAATGAATTTTAA-AAAAA
62077161 CTAATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
ATTAATGAATTTTAAAAAAAT
Found at i:62085510 original size:40 final size:41
Alignment explanation
Indices: 62085416--62085636 Score: 219
Period size: 40 Copynumber: 5.6 Consensus size: 41
62085406 TATTCGAATG
* *
62085416 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
62085457 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
* *
62085497 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
62085537 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * * *
62085577 ACATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
62085616 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
62085637 ATTTCTTGAG
Statistics
Matches: 149, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 14 0.09
40 91 0.61
41 28 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:62087386 original size:21 final size:23
Alignment explanation
Indices: 62087333--62087388 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
62087323 GACACATATG
62087333 CATGGTATATATATAAAAATGTA
1 CATGGTATATATATAAAAATGTA
* *
62087356 TA-AGTA-ATATAATAAAAAT-TA
1 CATGGTATATAT-ATAAAAATGTA
62087377 CATGGTATATAT
1 CATGGTATATAT
62087389 GTGTTAGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
21 7 0.27
22 14 0.54
23 5 0.19
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.36
Consensus pattern (23 bp):
CATGGTATATATATAAAAATGTA
Found at i:62089396 original size:21 final size:21
Alignment explanation
Indices: 62089370--62089415 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
62089360 GTTTTGGGGT
*
62089370 TAGGTTTATTTAGGTTTGGGC
1 TAGGTTTATTTAGGTTTAGGC
62089391 TAGGTTTATTTAGGTTTAGGC
1 TAGGTTTATTTAGGTTTAGGC
62089412 TAGG
1 TAGG
62089416 GGCCAAACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.04, G:0.33, T:0.46
Consensus pattern (21 bp):
TAGGTTTATTTAGGTTTAGGC
Found at i:62091353 original size:13 final size:13
Alignment explanation
Indices: 62091321--62091345 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62091311 TTGACTTGAT
62091321 CCGTGTGACACGC
1 CCGTGTGACACGC
62091334 CCGTGTGACACG
1 CCGTGTGACACG
62091346 TCTGTGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (13 bp):
CCGTGTGACACGC
Found at i:62091947 original size:32 final size:32
Alignment explanation
Indices: 62091824--62091950 Score: 148
Period size: 32 Copynumber: 3.9 Consensus size: 32
62091814 TTTCTGAGTG
* * **
62091824 GTACACACAAAGTATACCTTTCCTTTTCATA-T
1 GTACACACAAAGTGTACATAACCTTTTCA-AGT
* * * *
62091856 GGTATACACAAAGTATACCTAACCTTTCCAAGT
1 -GTACACACAAAGTGTACATAACCTTTTCAAGT
62091889 GTACACACAAAGTGTACATAACCTTTTCAAGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
*
62091921 GTACACATAAAGTGTACATAACCTTTTCAA
1 GTACACACAAAGTGTACATAACCTTTTCAA
62091951 ATTGTACCAT
Statistics
Matches: 84, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
32 58 0.69
33 26 0.31
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (32 bp):
GTACACACAAAGTGTACATAACCTTTTCAAGT
Found at i:62091957 original size:65 final size:65
Alignment explanation
Indices: 62091824--62091957 Score: 146
Period size: 65 Copynumber: 2.1 Consensus size: 65
62091814 TTTCTGAGTG
* ** * * *
62091824 GTACACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAAGTATACCTAACCTTTCCAAGT
1 GTACACACAAAGTATACATAACCTTTTCATATGGTACACACAAAGTATACATAACCTTTCAAAGT
* * *
62091889 GTACACACAAAGTGTACATAACCTTTTCA-A-GTGTACACATAAAGTGTACATAACCTTTTCAAA
1 GTACACACAAAGTATACATAACCTTTTCATATG-GTACACACAAAGTATACATAACC-TTTCAAA
*
62091952 TT
64 GT
62091954 GTAC
1 GTAC
62091958 CATTTGGGTA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
63 1 0.02
64 20 0.35
65 36 0.63
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.31
Consensus pattern (65 bp):
GTACACACAAAGTATACATAACCTTTTCATATGGTACACACAAAGTATACATAACCTTTCAAAGT
Found at i:62098330 original size:32 final size:32
Alignment explanation
Indices: 62098244--62098333 Score: 144
Period size: 32 Copynumber: 2.8 Consensus size: 32
62098234 CATATGGTAT
* * *
62098244 ACACAAAGTATACCTAACCTTTCCAAGTGTAC
1 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
*
62098276 ACACAAATTGTACATAACCTTTTCAAGTGTAC
1 ACACAAAGTGTACATAACCTTTTCAAGTGTAC
62098308 ACACAAAGTGTACATAACCTTTTCAA
1 ACACAAAGTGTACATAACCTTTTCAA
62098334 ATTGTACCAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (32 bp):
ACACAAAGTGTACATAACCTTTTCAAGTGTAC
Found at i:62100826 original size:31 final size:31
Alignment explanation
Indices: 62100791--62100849 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
62100781 TACTTTCCAA
62100791 ATTTTAAAATTTAAATTCAATTGTTAATCAG
1 ATTTTAAAATTTAAATTCAATTGTTAATCAG
62100822 ATTTTAAAATTTAAATTCAATTGTTAAT
1 ATTTTAAAATTTAAATTCAATTGTTAAT
62100850 AATGTTAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (31 bp):
ATTTTAAAATTTAAATTCAATTGTTAATCAG
Found at i:62105200 original size:18 final size:19
Alignment explanation
Indices: 62105177--62105212 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
62105167 TTCACCTTAC
62105177 AAAGCACT-CTCTTTTTCA
1 AAAGCACTCCTCTTTTTCA
*
62105195 AAAGCATTCCTCTTTTTC
1 AAAGCACTCCTCTTTTTC
62105213 CCTTGCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (19 bp):
AAAGCACTCCTCTTTTTCA
Found at i:62106743 original size:46 final size:48
Alignment explanation
Indices: 62106689--62106814 Score: 193
Period size: 46 Copynumber: 2.6 Consensus size: 48
62106679 TGATATGTGT
* *
62106689 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATAGACAA
* *
62106735 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATAGACAA
62106783 GCTAGTGTAAGACATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
62106815 AGCTTGTTGT
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
46 40 0.55
47 1 0.01
48 27 0.37
49 5 0.07
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATAGACAA
Found at i:62106901 original size:49 final size:49
Alignment explanation
Indices: 62106829--62106957 Score: 140
Period size: 49 Copynumber: 2.6 Consensus size: 49
62106819 TGTTGTGTGT
* *
62106829 CAGTGTAAGACCTG-TCTGGGACATGGCATC-GACAC-CGATAGATGAGAGC
1 CAGTGTAAGACTTGCT-TGGGACATGGCATCAG-C-CTCGATAGATGAAAGC
* * *
62106878 CAGTGTAAGACTTGCTTAGGACATGGCATCAGCCTCGATATATGAAAGT
1 CAGTGTAAGACTTGCTTGGGACATGGCATCAGCCTCGATAGATGAAAGC
*
62106927 CAGTGTAAGACCTTTC-TGGGACATGGCATCA
1 CAGTGTAAGA-CTTGCTTGGGACATGGCATCA
62106958 ACTTTGATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
48 1 0.01
49 62 0.90
50 6 0.09
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACTTGCTTGGGACATGGCATCAGCCTCGATAGATGAAAGC
Found at i:62106954 original size:142 final size:139
Alignment explanation
Indices: 62106683--62107001 Score: 360
Period size: 142 Copynumber: 2.2 Consensus size: 139
62106673 ATTGGGTGAT
* * ** *
62106683 ATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCATTGAGACGAGAGCTAGTGTAAGA
1 ATGTGTGC-AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGACGAGAGCCAGTGTAAGA
* * *
62106747 CATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCTAGTGTAAGACATGTCTGGGACATGGC
65 CATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAGACATGTCTGGGACATGGC
*
62106812 ATCAGC-TTG
130 ATCAACTTTG
* *
62106821 TTGTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAA
1 ATGTGTG-CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCG--AGACGAGAGCCAGTGTAA
* * * *
62106886 GACTTG-CTTAGGACATGGCATCAGCCTCGATATATGA-AAG-TCAGTGTAAGACCTTTCTGGGA
63 GACATGTC-TAGGACAT-GCATCAGCCTCGAGATAT-ACAAGCT-AGTGTAAGACATGTCTGGGA
62106948 CATGGCATCAACTTTG
124 CATGGCATCAACTTTG
62106964 ATGTGTTAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 ATGTG-T-G-CAGTGTAAGACC-TGTCTGGGACATGGC
62107002 GTCGGCATCT
Statistics
Matches: 152, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
138 28 0.18
139 10 0.07
140 1 0.01
141 29 0.19
142 47 0.31
143 8 0.05
144 1 0.01
145 13 0.09
146 15 0.10
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (139 bp):
ATGTGTGCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGACGAGAGCCAGTGTAAGAC
ATGTCTAGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAGACATGTCTGGGACATGGCA
TCAACTTTG
Found at i:62124879 original size:22 final size:22
Alignment explanation
Indices: 62124852--62124926 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
62124842 CATGTGTATG
62124852 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
62124874 TGTGATAAAGG-TGAACATGTG-TATG
1 TGTGAT-AAGGCCG-A-ATG-GCCA-A
62124899 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
62124921 TGTGAT
1 TGTGAT
62124927 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.31, C:0.12, G:0.32, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:62124923 original size:24 final size:24
Alignment explanation
Indices: 62124849--62124924 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
62124839 GAACATGTGT
62124849 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* *
62124873 A--TGTGATAAAGG-TGAACATGTG--T
1 ATGTGTGAT-AAGGCCG-A-ATG-GCCA
62124896 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
62124920 ATGTG
1 ATGTG
62124925 ATGAATGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
22 8 0.21
23 9 0.23
24 14 0.36
25 8 0.21
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:62125176 original size:47 final size:47
Alignment explanation
Indices: 62124709--62125160 Score: 726
Period size: 47 Copynumber: 9.6 Consensus size: 47
62124699 AGTATATATA
* * * * *
62124709 TGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA-CATGTGTATG
*
62124758 CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
62124805 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* *
62124852 TGTGATAAGGCCGAATGGCCAATGTGATAAAGGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
62124899 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
62124946 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
62124993 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* ** *
62125040 TGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* * *
62125087 TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATG
*
62125134 TGTGATACGGCCGAATGGCCAATGTGA
1 TGTGATAAGGCCGAATGGCCAATGTGA
62125161 CGGATGTGGA
Statistics
Matches: 382, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 347 0.91
48 2 0.01
49 32 0.08
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
Found at i:62128746 original size:179 final size:179
Alignment explanation
Indices: 62128446--62128805 Score: 720
Period size: 179 Copynumber: 2.0 Consensus size: 179
62128436 AGTCCAGACC
62128446 ATCCATAATTCTCTCGGTGGCCTCCAACTGGTACTCGACCACGTTAGGGGAGACTCCTATGACAC
1 ATCCATAATTCTCTCGGTGGCCTCCAACTGGTACTCGACCACGTTAGGGGAGACTCCTATGACAC
62128511 CCCTAAATAACTCAGCTCCATTAGATTGGATTTGTTCAGTTACCGACCCTCGGCCCCTAGATCTA
66 CCCTAAATAACTCAGCTCCATTAGATTGGATTTGTTCAGTTACCGACCCTCGGCCCCTAGATCTA
62128576 GTATTAGACCCAGTAATCCTCTCTAAAATCCTCAGCATGGCTTGGGACA
131 GTATTAGACCCAGTAATCCTCTCTAAAATCCTCAGCATGGCTTGGGACA
62128625 ATCCATAATTCTCTCGGTGGCCTCCAACTGGTACTCGACCACGTTAGGGGAGACTCCTATGACAC
1 ATCCATAATTCTCTCGGTGGCCTCCAACTGGTACTCGACCACGTTAGGGGAGACTCCTATGACAC
62128690 CCCTAAATAACTCAGCTCCATTAGATTGGATTTGTTCAGTTACCGACCCTCGGCCCCTAGATCTA
66 CCCTAAATAACTCAGCTCCATTAGATTGGATTTGTTCAGTTACCGACCCTCGGCCCCTAGATCTA
62128755 GTATTAGACCCAGTAATCCTCTCTAAAATCCTCAGCATGGCTTGGGACA
131 GTATTAGACCCAGTAATCCTCTCTAAAATCCTCAGCATGGCTTGGGACA
62128804 AT
1 AT
62128806 GCGTCCTCCC
Statistics
Matches: 181, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
179 181 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (179 bp):
ATCCATAATTCTCTCGGTGGCCTCCAACTGGTACTCGACCACGTTAGGGGAGACTCCTATGACAC
CCCTAAATAACTCAGCTCCATTAGATTGGATTTGTTCAGTTACCGACCCTCGGCCCCTAGATCTA
GTATTAGACCCAGTAATCCTCTCTAAAATCCTCAGCATGGCTTGGGACA
Found at i:62129850 original size:17 final size:16
Alignment explanation
Indices: 62129830--62129870 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
62129820 TTTTCAAAGG
62129830 CCCAAATTAACCCTAAA
1 CCCAAATTAACCCT-AA
**
62129847 CCCAAACAAACCCTAA
1 CCCAAATTAACCCTAA
62129863 CCCAAATT
1 CCCAAATT
62129871 GGTCCAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.46, C:0.39, G:0.00, T:0.15
Consensus pattern (16 bp):
CCCAAATTAACCCTAA
Found at i:62130243 original size:39 final size:39
Alignment explanation
Indices: 62130190--62130271 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
62130180 TGATTGTGGT
62130190 TCTT-ATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
1 TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
62130228 TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
1 TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
62130267 TCTTA
1 TCTTA
62130272 CAAAGATAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 4 0.09
39 39 0.91
ACGTcount: A:0.15, C:0.11, G:0.10, T:0.65
Consensus pattern (39 bp):
TCTTAATCTTCTTTATTTTTTGCTTTATTTTTGAGGTTA
Found at i:62130295 original size:13 final size:14
Alignment explanation
Indices: 62130273--62130307 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
62130263 GTTATCTTAC
*
62130273 AAAGATAAAAAA-A
1 AAAGAAAAAAAAGA
62130286 AAAGAAAAAAAAGA
1 AAAGAAAAAAAAGA
62130300 AAAGAAAA
1 AAAGAAAA
62130308 GTTTACTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (14 bp):
AAAGAAAAAAAAGA
Found at i:62132861 original size:40 final size:39
Alignment explanation
Indices: 62132792--62132999 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 39
62132782 CGGGATTGAG
* * *
62132792 CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
62132831 CCGGATGTGATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATAT-ATCACTAGCACAAATGCCTTCGGGTCTTAGC
62132871 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
62132911 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGT
1 CCGGATATATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
62132951 CCGGTTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATA-TCA-CTAGCACAAATGCCTTCGGGTCTTAGC
62132992 CCGGATAT
1 CCGGATAT
62133000 CATTCGAATA
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 15 0.11
40 96 0.69
41 29 0.21
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62141052 original size:39 final size:39
Alignment explanation
Indices: 62141000--62141166 Score: 271
Period size: 39 Copynumber: 4.3 Consensus size: 39
62140990 TATGAGATTG
*
62141000 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
*
62141039 AAAATATCCGGACATGAGATCCGCAGGCTACATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
* *
62141078 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
* * *
62141117 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
62141156 AAAATATCCGG
1 AAAATATCCGG
62141167 GTTAAAGACC
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGA
Found at i:62141180 original size:78 final size:78
Alignment explanation
Indices: 62141000--62141192 Score: 237
Period size: 78 Copynumber: 2.5 Consensus size: 78
62140990 TATGAGATTG
* ** *
62141000 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAG
62141065 GCTACATGCTGGA
66 GCTACATGCTGGA
* ** * * *
62141078 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAG
*
62141143 GCTACGTGCTGGA
66 GCTACATGCTGGA
** *
62141156 AAAATATCCGG-GTTAAAGACCCGCAGGCT-TACGCTAG
1 AAAATATCCGGACAT-AAGACCCGCAGGCTATATGCTAG
62141193 TAATGTATTC
Statistics
Matches: 103, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
77 8 0.08
78 95 0.92
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (78 bp):
AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGATCCGCAG
GCTACATGCTGGA
Found at i:62145026 original size:37 final size:37
Alignment explanation
Indices: 62144964--62145109 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
62144954 AGCTCAGACG
* * * *
62144964 AAATCTCCACACGAAGTTATTGGGTCCTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
62145001 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
62145038 TAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
62145075 TAATCTCCACACGTAGTCATCGGTTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
62145110 ATATATTTCC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:62145323 original size:47 final size:47
Alignment explanation
Indices: 62145272--62145598 Score: 546
Period size: 47 Copynumber: 7.0 Consensus size: 47
62145262 TTTCACACTA
* * *
62145272 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
62145319 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
62145366 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
62145413 GCCATTCGGCCTTATCACACATATGCATACTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
62145460 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
62145507 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
62145554 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
62145599 AAAATCCTAA
Statistics
Matches: 263, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 263 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Done.