Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 192 of 316
Found at i:62153434 original size:39 final size:39
Alignment explanation
Indices: 62153380--62153546 Score: 235
Period size: 39 Copynumber: 4.3 Consensus size: 39
62153370 TATGAGATTG
* * *
62153380 AAAATATCCGAACATGAGGTCCGTAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
*
62153419 AAAATATCCAGACATGAGATCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* *
62153458 AAAATATCCGGACATGAGATCCGTAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* * * **
62153497 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
62153536 AAAATATCCGG
1 AAAATATCCGG
62153547 GTTAAAGACC
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
Found at i:62153564 original size:78 final size:78
Alignment explanation
Indices: 62153380--62153572 Score: 201
Period size: 78 Copynumber: 2.5 Consensus size: 78
62153370 TATGAGATTG
* * ** * *
62153380 AAAATATCCGAACATGAGGTCCGTAGGCTATATGCTGGAAAAATATCCAGACATGAGATCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGATCCGCAG
*
62153445 GCTATATGCTGGA
66 GCTACATGCTGGA
* * * * * * *
62153458 AAAATATCCGGACATGAGATCCGTAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGATCCGCAG
*
62153523 GCTACGTGCTGGA
66 GCTACATGCTGGA
** *
62153536 AAAATATCCGG-GTTAAAGACCCGCAGGCT-TACGCTAG
1 AAAATATCCGGACAT-AAGACCCGCAGGCTATATGCTAG
62153573 TAATGTATTC
Statistics
Matches: 99, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
77 8 0.08
78 91 0.92
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (78 bp):
AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGATCCGCAG
GCTACATGCTGGA
Found at i:62154534 original size:27 final size:28
Alignment explanation
Indices: 62154497--62154595 Score: 112
Period size: 27 Copynumber: 3.5 Consensus size: 28
62154487 TTGAATTTAC
62154497 ACTTAGTGAAATGTCTAATGTTGAAAAA
1 ACTTAGTGAAATGTCTAATGTTGAAAAA
* * * *
62154525 ACTTA-TGAAATGATCCAAAAGTTGAATTTAC
1 ACTTAGTGAAATG-T-CTAATGTTGAA--AAA
62154556 ACTTAGTGAAATGTCTAATGTTGAAAAA
1 ACTTAGTGAAATGTCTAATGTTGAAAAA
62154584 ACTTA-TGAAATG
1 ACTTAGTGAAATG
62154596 ATCCAAAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
27 14 0.24
28 12 0.21
29 9 0.16
30 9 0.16
31 7 0.12
32 7 0.12
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.32
Consensus pattern (28 bp):
ACTTAGTGAAATGTCTAATGTTGAAAAA
Found at i:62154579 original size:59 final size:59
Alignment explanation
Indices: 62154487--62154609 Score: 246
Period size: 59 Copynumber: 2.1 Consensus size: 59
62154477 TTGAAATATC
62154487 TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
1 TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
62154546 TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
1 TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
62154605 TTGAA
1 TTGAA
62154610 GGAAGCTTTG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 64 1.00
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (59 bp):
TTGAATTTACACTTAGTGAAATGTCTAATGTTGAAAAAACTTATGAAATGATCCAAAAG
Found at i:62154609 original size:29 final size:29
Alignment explanation
Indices: 62154516--62154609 Score: 111
Period size: 29 Copynumber: 3.2 Consensus size: 29
62154506 AATGTCTAAT
62154516 GTTGAAAAAACTTATGAAATGATCCAAAA
1 GTTGAAAAAACTTATGAAATGATCCAAAA
* * * *
62154545 GTTGAATTTACACTTAGTGAAATG-T-CTAAT
1 GTTGAA--AAAACTTA-TGAAATGATCCAAAA
62154575 GTTGAAAAAACTTATGAAATGATCCAAAA
1 GTTGAAAAAACTTATGAAATGATCCAAAA
62154604 GTTGAA
1 GTTGAA
62154610 GGAAGCTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
27 7 0.13
28 7 0.13
29 15 0.29
30 9 0.17
31 7 0.13
32 7 0.13
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.30
Consensus pattern (29 bp):
GTTGAAAAAACTTATGAAATGATCCAAAA
Found at i:62159991 original size:40 final size:40
Alignment explanation
Indices: 62159946--62160130 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
62159936 CTTGCACAAG
* * *
62159946 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
62159986 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
62160026 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
62160066 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
62160107 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
62160131 CATTCAAATA
Statistics
Matches: 121, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 91 0.75
41 29 0.24
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:62167979 original size:40 final size:40
Alignment explanation
Indices: 62167934--62168116 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 40
62167924 CTTGCACAAG
* * *
62167934 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
62167974 GCCTTC-GGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
62168013 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
62168053 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTATCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
62168094 GCCTTCGGGACTTAGCCC-GATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
62168117 CATTCGAATA
Statistics
Matches: 117, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 34 0.29
40 60 0.51
41 23 0.20
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:62168054 original size:79 final size:81
Alignment explanation
Indices: 62167934--62168116 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
62167924 CTTGCACAAG
* * *
62167934 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGA-CTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATA
* *
62167998 ATC-GCTAGCACAAAT
66 ATCACCTAGCACAAAA
* * * *
62168013 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGATCTTAGCCCGGATAT
* *
62168077 AGTCACCTATCACAAAA
65 AATCACCTAGCACAAAA
*
62168094 GCCTTCGGGACTTAGCCC-GATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
62168117 CATTCGAATA
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 42 0.47
80 20 0.22
81 26 0.29
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATA
ATCACCTAGCACAAAA
Found at i:62173347 original size:21 final size:21
Alignment explanation
Indices: 62173323--62173368 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
62173313 TACATAATAT
*
62173323 AAAATAAAAAATAAACAAAAA
1 AAAATAAAAAATAAAAAAAAA
* *
62173344 AAAATTAAATATAAAAAAAAA
1 AAAATAAAAAATAAAAAAAAA
62173365 AAAA
1 AAAA
62173369 AACATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.85, C:0.02, G:0.00, T:0.13
Consensus pattern (21 bp):
AAAATAAAAAATAAAAAAAAA
Found at i:62173370 original size:7 final size:7
Alignment explanation
Indices: 62173318--62173367 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
62173308 TATTATACAT
*
62173318 AATATAA
1 AATAAAA
62173325 AATAAAA
1 AATAAAA
62173332 AATAAACA
1 AATAAA-A
62173340 AA-AAAA
1 AATAAAA
*
62173346 AATTAAA
1 AATAAAA
*
62173353 TATAAAA
1 AATAAAA
62173360 AA-AAAA
1 AATAAAA
62173366 AA
1 AA
62173368 AAACATAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
6 9 0.25
7 24 0.67
8 3 0.08
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (7 bp):
AATAAAA
Found at i:62186883 original size:63 final size:63
Alignment explanation
Indices: 62186784--62186908 Score: 232
Period size: 63 Copynumber: 2.0 Consensus size: 63
62186774 ACCGTGACTC
62186784 TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTGTCGGAGTCGAACACGAGGTGA
1 TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTGTCGGAGTCGAACACGAGGTGA
* *
62186847 TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTTTCGGAGTCGAGCACGAGGTG
1 TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTGTCGGAGTCGAACACGAGGTG
62186909 CTAACCGACT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (63 bp):
TGATACCAATAAAATTGTAACACCCCGTACCCGAGACCGTTGTCGGAGTCGAACACGAGGTGA
Found at i:62188296 original size:40 final size:40
Alignment explanation
Indices: 62188239--62188423 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
62188229 CTTGCACAAG
* * * * *
62188239 GCCTTCGGGTCTGAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
62188279 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * **
62188319 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCATGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
62188359 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTATCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
62188400 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
62188424 CATTCGAATA
Statistics
Matches: 117, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 86 0.74
41 25 0.21
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:62188360 original size:80 final size:81
Alignment explanation
Indices: 62188239--62188423 Score: 223
Period size: 80 Copynumber: 2.3 Consensus size: 81
62188229 CTTGCACAAG
* * *
62188239 GCCTTCGGGTCTGAGCCCGGATGTGGTCACTAGCATAAATGCCTTCGGGA-CTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTC-GGATCTTAGCCCGGATAT
* *
62188303 AATC-GCTAGCACAAAT
65 AATCACCTAGCACAAAA
* * * *
62188319 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCATGAATGCCTTCGGATCTTAGTCCGGTTAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAATGCCTTCGGATCTTAGCCCGGATAT
* *
62188383 AGTCACCTATCACAAAA
65 AATCACCTAGCACAAAA
*
62188400 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
62188424 CATTCGAATA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 4 0.04
80 54 0.60
81 32 0.36
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCGGATCTTAGCCCGGATATA
ATCACCTAGCACAAAA
Found at i:62201006 original size:21 final size:20
Alignment explanation
Indices: 62200980--62201019 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
62200970 TGCATGGCTC
*
62200980 ACACGCTCGTATGGTCTAGGG
1 ACACGCCCGTATGGT-TAGGG
*
62201001 ACACGCCCGTGTGGTTAGG
1 ACACGCCCGTATGGTTAGG
62201020 CCGTGTACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTATGGTTAGGG
Found at i:62209305 original size:12 final size:13
Alignment explanation
Indices: 62209269--62209306 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
62209259 AAATATTTGG
62209269 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
62209282 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
62209296 CTTG-TCTTAAT
1 CTTGTTCTTAAT
62209307 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:62211545 original size:48 final size:49
Alignment explanation
Indices: 62211466--62211613 Score: 129
Period size: 48 Copynumber: 3.0 Consensus size: 49
62211456 GCTAGCTCTG
* * * * * *
62211466 AAGAGCCATTAACGGGAAGCTTCGGATAGCCATATATCGGGAAGTTCA-A
1 AAGAGCCA-TATCGGGAAGCTCCGAAGAGCCATATATCGAGAAGCTCACA
** *
62211515 GCGAGCCATATCGGGAAGCTCCGAAGAGCCAT-TAATCAAGAAGCTCACA
1 AAGAGCCATATCGGGAAGCTCCGAAGAGCCATAT-ATCGAGAAGCTCACA
* * *
62211564 AAGAGCCTTTAATCGGGAAGCTCACGAAGAGCCTTATATCGAGATGCTCA
1 AAGAGCC-AT-ATCGGGAAGCTC-CGAAGAGCCATATATCGAGAAGCTCA
62211614 TAAAAGCTGC
Statistics
Matches: 78, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
47 1 0.01
48 30 0.38
49 12 0.15
50 1 0.01
51 12 0.15
52 21 0.27
53 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (49 bp):
AAGAGCCATATCGGGAAGCTCCGAAGAGCCATATATCGAGAAGCTCACA
Found at i:62211583 original size:26 final size:26
Alignment explanation
Indices: 62211524--62211598 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
62211514 AGCGAGCCAT
*
62211524 ATCGGGAAGCTC-CGAAGAGCCATTA
1 ATCGGGAAGCTCACGAAGAGCCTTTA
** *
62211549 ATCAAGAAGCTCACAAAGAGCCTTTA
1 ATCGGGAAGCTCACGAAGAGCCTTTA
62211575 ATCGGGAAGCTCACGAAGAGCCTT
1 ATCGGGAAGCTCACGAAGAGCCTT
62211599 ATATCGAGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 10 0.24
26 32 0.76
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (26 bp):
ATCGGGAAGCTCACGAAGAGCCTTTA
Found at i:62211604 original size:26 final size:26
Alignment explanation
Indices: 62211493--62211613 Score: 101
Period size: 26 Copynumber: 4.8 Consensus size: 26
62211483 AGCTTCGGAT
* * * *
62211493 AGCCATATATCGGGAAGTTCAAG-CG
1 AGCCTTATATCGGGAAGCTCACGAAG
62211518 AGCC--ATATCGGGAAGCTC-CGAAG
1 AGCCTTATATCGGGAAGCTCACGAAG
** *
62211541 AGCCATTA-ATCAAGAAGCTCACAAAG
1 AGCC-TTATATCGGGAAGCTCACGAAG
62211567 AGCCTT-TAATCGGGAAGCTCACGAAG
1 AGCCTTAT-ATCGGGAAGCTCACGAAG
* *
62211593 AGCCTTATATCGAGATGCTCA
1 AGCCTTATATCGGGAAGCTCA
62211614 TAAAAGCTGC
Statistics
Matches: 77, Mismatches: 11, Indels: 15
0.75 0.11 0.15
Matches are distributed among these distances:
22 1 0.01
23 18 0.23
25 16 0.21
26 41 0.53
27 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (26 bp):
AGCCTTATATCGGGAAGCTCACGAAG
Found at i:62215981 original size:40 final size:39
Alignment explanation
Indices: 62215897--62216081 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
62215887 TCGAATGATG
* * * *
62215897 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-GAGTTACTAAA
* *
62215937 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62215977 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
62216016 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
62216057 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
62216082 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.28
40 79 0.63
41 12 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62216103 original size:79 final size:79
Alignment explanation
Indices: 62215950--62216114 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
62215940 GGACTAAGAT
* **
62215950 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
62216015 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
62216029 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
62216092 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
62216108 CCGAAGG
1 CCGAAGG
62216115 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:62224068 original size:79 final size:81
Alignment explanation
Indices: 62223932--62224114 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
62223922 TCGAATGATG
* *
62223932 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
62223996 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
62224011 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
62224073 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
62224091 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
62224115 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:62224130 original size:40 final size:40
Alignment explanation
Indices: 62223933--62224116 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
62223923 CGAATGATGT
* * * *
62223933 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
62223973 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
62224013 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
62224051 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
62224092 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
62224117 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:62224138 original size:79 final size:79
Alignment explanation
Indices: 62223985--62224149 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
62223975 GGACTAAGAT
* **
62223985 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
62224050 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
62224064 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
62224127 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
62224143 CCGAAGG
1 CCGAAGG
62224150 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:62226861 original size:36 final size:36
Alignment explanation
Indices: 62226819--62226887 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
62226809 TAAAAATGTT
62226819 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
1 AATAAGACAATTATGAACTTAAAATAAATAAAAATA
62226855 AATAAGACAATTATGAACTTAAAATAAATAAAA
1 AATAAGACAATTATGAACTTAAAATAAATAAAA
62226888 TATTTTTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (36 bp):
AATAAGACAATTATGAACTTAAAATAAATAAAAATA
Found at i:62235815 original size:18 final size:19
Alignment explanation
Indices: 62235778--62235817 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
62235768 TGATGAAAAA
*
62235778 AAATTCAAAATAATATCAT
1 AAATTCAAAATAAAATCAT
62235797 AAATTCAAAA-AAAATCAT
1 AAATTCAAAATAAAATCAT
62235815 AAA
1 AAA
62235818 ATCCAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.25
Consensus pattern (19 bp):
AAATTCAAAATAAAATCAT
Found at i:62235819 original size:19 final size:19
Alignment explanation
Indices: 62235777--62235826 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
62235767 GTGATGAAAA
*
62235777 AAAATTCAAAATAATATCAT
1 AAAATTCAAAA-AAAATCAT
62235797 -AAATTCAAAAAAAATCAT
1 AAAATTCAAAAAAAATCAT
*
62235815 AAAATCCAAAAA
1 AAAATTCAAAAA
62235827 GACAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 7 0.26
19 20 0.74
ACGTcount: A:0.66, C:0.12, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATTCAAAAAAAATCAT
Found at i:62244538 original size:23 final size:23
Alignment explanation
Indices: 62244512--62244578 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
62244502 TCATGATTAC
62244512 TATATATTAGTGTATAT-TTTATA
1 TATATATTA-TGTATATATTTATA
* *
62244535 TATATA-TATGTATATGTTTTTA
1 TATATATTATGTATATATTTATA
62244557 -ATATATTTATGTATATATTTAT
1 TATATA-TTATGTATATATTTAT
62244579 GTAGCATTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
21 12 0.32
22 7 0.18
23 19 0.50
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.58
Consensus pattern (23 bp):
TATATATTATGTATATATTTATA
Found at i:62244665 original size:30 final size:30
Alignment explanation
Indices: 62244610--62244684 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
62244600 TTTATCCCTA
*
62244610 ATAT-TTATGTATTATGTAAATA-TTTTAAT
1 ATATATTATGTA-TATCTAAATATTTTTAAT
* **
62244639 ATTATATTATGTATATCTATATATTTTTCGT
1 A-TATATTATGTATATCTAAATATTTTTAAT
62244670 ATATATTATGTATAT
1 ATATATTATGTATAT
62244685 GTGTTTTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 25 0.64
31 13 0.33
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.56
Consensus pattern (30 bp):
ATATATTATGTATATCTAAATATTTTTAAT
Found at i:62244792 original size:19 final size:19
Alignment explanation
Indices: 62244768--62244804 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
62244758 CTATTTTATA
*
62244768 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
62244787 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
62244805 ATCATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:62244895 original size:9 final size:9
Alignment explanation
Indices: 62244877--62244913 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
62244867 TCATTTCTAA
62244877 TATATATAT
1 TATATATAT
*
62244886 TATATGTAT
1 TATATATAT
*
62244895 TTTATATAT
1 TATATATAT
62244904 TATATATAT
1 TATATATAT
62244913 T
1 T
62244914 TTTTAATGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (9 bp):
TATATATAT
Found at i:62244902 original size:18 final size:18
Alignment explanation
Indices: 62244879--62244915 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
62244869 ATTTCTAATA
*
62244879 TATATATTATATGTATTT
1 TATATATTATATATATTT
62244897 TATATATTATATATATTT
1 TATATATTATATATATTT
62244915 T
1 T
62244916 TTAATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:62245133 original size:24 final size:23
Alignment explanation
Indices: 62245101--62245145 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
62245091 ATACTAGTAC
62245101 ATATAC-TTTATTATATGAGTATAT
1 ATATACTTTTA-TATAT-AGTATAT
62245125 ATATACTTTTATATATAGTAT
1 ATATACTTTTATATATAGTAT
62245146 TATTTTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (23 bp):
ATATACTTTTATATATAGTATAT
Found at i:62245226 original size:21 final size:22
Alignment explanation
Indices: 62245168--62245226 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 22
62245158 TTATCATATT
*
62245168 TATTATTATACCTATTATTTTCAC
1 TATTATTATA--TATTATTTTCAA
* *
62245192 TATTATCATTTATTATTTT-AA
1 TATTATTATATATTATTTTCAA
62245213 TATTATTATATATT
1 TATTATTATATATT
62245227 CATATATGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 13 0.43
22 9 0.30
24 8 0.27
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (22 bp):
TATTATTATATATTATTTTCAA
Found at i:62245343 original size:25 final size:24
Alignment explanation
Indices: 62245315--62245370 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
62245305 GTTATATTTT
*
62245315 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
62245340 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
62245363 CACTATTA
1 CACTATTA
62245371 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:62257227 original size:74 final size:75
Alignment explanation
Indices: 62257148--62257379 Score: 308
Period size: 74 Copynumber: 3.1 Consensus size: 75
62257138 TTTATTTCTG
* *
62257148 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGTTGAGGTATTTTC
*
62257213 AATCT-ATTT
66 AATCTCAGTT
* *
62257222 TTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAACCTCAGGACACGCTGAGGTAGTTTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGTTGAGGTA-TTTT
*
62257287 -AATTTCAGTT
65 CAATCTCAGTT
** *
62257297 CATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTTACATGTTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGG--ACACGTTGAGGTATTT
* *
62257362 ACAATTTCCA-TT
64 TCAATCT-CAGTT
62257374 TTTCAA
1 TTTCAA
62257380 TTTATGTTTT
Statistics
Matches: 138, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
74 60 0.43
75 51 0.37
76 3 0.02
77 22 0.16
78 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (75 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGTTGAGGTATTTTC
AATCTCAGTT
Found at i:62257467 original size:90 final size:90
Alignment explanation
Indices: 62257302--62257521 Score: 273
Period size: 90 Copynumber: 2.4 Consensus size: 90
62257292 CAGTTCATCA
* * * **
62257302 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTTACATGTTGAGGTATTTACAAT
1 AAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTACAAT
** *
62257367 TTCCATTTTTCAATTTATGTTTTTC
66 TAACATTTTTCAATTTATGCTTTTC
* * * *
62257392 -AAAAATAAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGATCACATGCCGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGG-TCACATGCCGAGGTATTTACAA
**
62257456 TTAATGTTTTTCAATTTATGCTTTTC
65 TTAACATTTTTCAATTTATGCTTTTC
62257482 AAAAAAATCAACTCATATTG-TGAGAGGTGAGTTGAGCCTC
1 -AAAAAATCAACTCATATTGCT-AGAGGTGAGTTGAGCCTC
62257522 GGAACACGCT
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
89 36 0.33
90 39 0.36
91 1 0.01
92 33 0.30
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.36
Consensus pattern (90 bp):
AAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTACAAT
TAACATTTTTCAATTTATGCTTTTC
Found at i:62257468 original size:14 final size:14
Alignment explanation
Indices: 62257449--62257483 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
62257439 TGCCGAGGTA
*
62257449 TTTTCAATTAATGT
1 TTTTCAATTAATGC
*
62257463 TTTTCAATTTATGC
1 TTTTCAATTAATGC
62257477 TTTTCAA
1 TTTTCAA
62257484 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTAATGC
Found at i:62257600 original size:71 final size:71
Alignment explanation
Indices: 62257484--62257623 Score: 185
Period size: 71 Copynumber: 2.0 Consensus size: 71
62257474 TGCTTTTCAA
* ** *
62257484 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGAACACGCTGAGGTATTGTT-AATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACACGCTGAGGTATT-TTCAATTT
*
62257548 TTGTTTC
65 CTGTTTC
* *
62257555 AAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-AGACACGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGA-ACACGCTGAGGTATTTTCAATTT
62257619 CTGTT
65 CTGTT
62257624 CAATTTATGT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
70 3 0.05
71 57 0.95
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACACGCTGAGGTATTTTCAATTTC
TGTTTC
Found at i:62257753 original size:335 final size:326
Alignment explanation
Indices: 62257148--62257851 Score: 818
Period size: 335 Copynumber: 2.1 Consensus size: 326
62257138 TTTATTTCTG
*
62257148 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
** *
62257213 AATCTATTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAACCTCAGGACACGCTGA
66 AATCTATTTTTTC-AAAAAATCAACTCATATTGCGAGAAATAAGTTGAACCTCAAGACACGCTGA
*
62257278 GGTAGTTTTAATTTCAGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAG
130 GGTAGTTTTAATTTCAGTTCATCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAACCTCAG
* * * * * * *
62257343 GTTACATGTTGAGGTATTTACAATTTCCATTTTTCAATTTATGTTTTTCAAAAATAAATTCATAT
195 GTGACACGCTGAGATATTTACAATTTCCATTTTTAAATTTATGCTTTTCAAAAATAAACTCATAT
* * * *
62257408 TGCTAGAGGTGAATTGAGCCTCAGGATCACATGCCGAGGTATTTTCAATTAA-TGTTTTTCAATT
260 TACGAGAGGTGAATTGAGCCTCAGG-TCACATGCCGAGGTATTTTCAA--AACTGTTTTGCAAAT
62257472 TATGCT
322 TATG-T
* *
62257478 TTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGAACACGCTGAGGTATTGT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCTGAGGTATT-T
* * * *
62257542 T-AAT-T-TTTGTTTC-AAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
64 TCAATCTATTT-TTTCAAAAAATCAACTCATATTGCGAGAAATAAGTTGAACCTCAAGACACGCT
* * **
62257603 GAGGTA-TTTTCAATTTCTGTTCAATTTATGTTTTTCAAAATCAACTCATATTGAGAGAGGTGAG
128 GAGGTAGTTTT-AATTTCAGTTC-A-TCA------AAAAAATCAACTCATATTGAGAGAGGTGAG
* * * ***
62257667 TTGAGCCTC-GG-GGCACGCTGAGATATTTTCAATTAATGTTTTTTTAAATTTATGCTTTTCAAA
184 TTGAACCTCAGGTGACACGCTGAGATATTTACAATT--TCCATTTTTAAATTTATGCTTTTCAAA
* * *
62257730 AATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTTACATGCCGAGGTATTTTCAAAATCT
247 AATAAACTCATATTACGAGAGGTGAATTGAGCCTCAGGTCACATGCCGAGGTATTTTCAAAA-CT
*
62257795 GTTTTGCAAATTCTGT
311 GTTTTGCAAATTATGT
*
62257811 TTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
62257852 TTGCTCACGT
Statistics
Matches: 320, Mismatches: 38, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
326 4 0.01
327 57 0.18
328 4 0.01
329 8 0.03
330 60 0.19
331 37 0.12
332 2 0.01
333 22 0.07
334 36 0.11
335 90 0.28
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (326 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
AATCTATTTTTTCAAAAAATCAACTCATATTGCGAGAAATAAGTTGAACCTCAAGACACGCTGAG
GTAGTTTTAATTTCAGTTCATCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAACCTCAGG
TGACACGCTGAGATATTTACAATTTCCATTTTTAAATTTATGCTTTTCAAAAATAAACTCATATT
ACGAGAGGTGAATTGAGCCTCAGGTCACATGCCGAGGTATTTTCAAAACTGTTTTGCAAATTATG
T
Found at i:62257809 original size:14 final size:13
Alignment explanation
Indices: 62257783--62257818 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
62257773 TGCCGAGGTA
62257783 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
62257796 TTTTGCAAATTCTG
1 TTTT-CAAAATCTG
62257810 TTTTCAAAA
1 TTTTCAAAA
62257819 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:62257837 original size:88 final size:86
Alignment explanation
Indices: 62257551--62257851 Score: 331
Period size: 83 Copynumber: 3.5 Consensus size: 86
62257541 TTAATTTTTG
* * * *
62257551 TTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
** * *
62257616 TTTCTG--TTCAATTTATGTT
66 AATCTGTTTTCAAATTATGCT
* * * * *
62257635 TTTC-AAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGATATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* * *
62257699 TTAATGTTTTTTTAAATTTATGCT
66 --AATCTGTTTTCAAA-TTATGCT
* * * *
62257723 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTTACATGCCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTC
*
62257788 AAAATCTGTTTTGCAAATTCTG-T
64 AAAATCTGTTTT-CAAATTATGCT
62257811 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
62257852 TTGCTCACGT
Statistics
Matches: 179, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
83 51 0.28
84 4 0.02
85 2 0.01
87 4 0.02
88 50 0.28
89 49 0.27
90 3 0.02
91 16 0.09
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (86 bp):
TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
AATCTGTTTTCAAATTATGCT
Found at i:62257873 original size:88 final size:88
Alignment explanation
Indices: 62257551--62257874 Score: 322
Period size: 88 Copynumber: 3.7 Consensus size: 88
62257541 TTAATTTTTG
* * * *
62257551 TTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT--TGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGTGCTGAGGTATTTTC
** * *
62257614 AATTTCTG--TTCAATTTATGTT
66 AAAATCTGTTTTCAAATTATGCT
* * * * *
62257635 TTTC-AAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGATATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGTGCTGAGGTATTTTC
* * *
62257697 AATTAATGTTTTTTTAAATTTATGCT
66 AA--AATCTGTTTTCAAA-TTATGCT
* * * * *
62257723 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTTACATGCCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGTGCTGAGGTATTTTC
*
62257788 AAAATCTGTTTTGCAAATTCTG-T
66 AAAATCTGTTTT-CAAATTATGCT
** * *
62257811 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTT
1 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGTGCTGAGGTATTTT
62257875 TTTCAATTTC
Statistics
Matches: 194, Mismatches: 35, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
83 50 0.26
84 4 0.02
85 2 0.01
87 4 0.02
88 66 0.34
89 51 0.26
90 3 0.02
91 14 0.07
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (88 bp):
TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACGTGCTGAGGTATTTTC
AAAATCTGTTTTCAAATTATGCT
Found at i:62259719 original size:21 final size:21
Alignment explanation
Indices: 62259662--62259753 Score: 75
Period size: 23 Copynumber: 4.2 Consensus size: 21
62259652 ATTTACTTTT
62259662 TATAT-TTTA-ATATTATTAT-
1 TATATGTTTATATA-TATTATG
*
62259681 TATCATGATTACTATATATTAGTG
1 TAT-ATGTTTA-TATATATTA-TG
62259705 TATAT-TTTATATATATATATG
1 TATATGTTTATATATAT-TATG
*
62259726 TATATGTTTTTAATATATTTATG
1 TATATGTTTAT-ATATA-TTATG
62259749 TATAT
1 TATAT
62259754 ACTTATGTAG
Statistics
Matches: 60, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
19 3 0.05
20 2 0.03
21 17 0.28
22 14 0.23
23 20 0.33
24 4 0.07
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TATATGTTTATATATATTATG
Found at i:62259719 original size:23 final size:23
Alignment explanation
Indices: 62259662--62259753 Score: 74
Period size: 21 Copynumber: 4.2 Consensus size: 23
62259652 ATTTACTTTT
62259662 TATAT-TTTA-ATAT-TATTAT-
1 TATATGTTTATATATATATTATG
* *
62259681 TATCATGATTA-CTATATATTAGTG
1 TAT-ATGTTTATATATATATTA-TG
62259705 TATAT-TTTATATATATA-TATG
1 TATATGTTTATATATATATTATG
*
62259726 TATATGTTTTTA-ATATATTTATG
1 TATATGTTTATATATATA-TTATG
62259749 TATAT
1 TATAT
62259754 ACTTATGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
19 3 0.05
20 2 0.03
21 18 0.31
22 15 0.25
23 18 0.31
24 3 0.05
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
TATATGTTTATATATATATTATG
Found at i:62259951 original size:18 final size:18
Alignment explanation
Indices: 62259908--62259952 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
62259898 CACTATTTTA
*
62259908 TATATATTTCTAATTCAT
1 TATATATTTCTAAATCAT
*
62259926 TGTATATTTCTAACATCAT
1 TATATATTTCTAA-ATCAT
62259945 TAT-TATTT
1 TATATATTT
62259953 ATATATATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.31, C:0.11, G:0.02, T:0.56
Consensus pattern (18 bp):
TATATATTTCTAAATCAT
Found at i:62260028 original size:9 final size:9
Alignment explanation
Indices: 62260011--62260045 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
62260001 ATCATTTCTA
62260011 ATATATATT
1 ATATATATT
*
62260020 ATATGTATT
1 ATATATATT
*
62260029 TTATATATT
1 ATATATATT
62260038 ATATATAT
1 ATATATAT
62260046 ATTTTAATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (9 bp):
ATATATATT
Found at i:62260266 original size:24 final size:23
Alignment explanation
Indices: 62260234--62260278 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
62260224 ATACTAGTAC
62260234 ATATAC-TTTATTATATGAGTATAT
1 ATATACTTTTA-TATAT-AGTATAT
62260258 ATATACTTTTATATATAGTAT
1 ATATACTTTTATATATAGTAT
62260279 TATTTTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (23 bp):
ATATACTTTTATATATAGTATAT
Found at i:62260359 original size:21 final size:22
Alignment explanation
Indices: 62260301--62260359 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 22
62260291 TTATCATATT
*
62260301 TATTATTATACCTATTATTTTCAC
1 TATTATTATA--TATTATTTTCAA
* *
62260325 TATTATCATTTATTATTTT-AA
1 TATTATTATATATTATTTTCAA
62260346 TATTATTATATATT
1 TATTATTATATATT
62260360 CATATATGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 13 0.43
22 9 0.30
24 8 0.27
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (22 bp):
TATTATTATATATTATTTTCAA
Found at i:62260475 original size:25 final size:24
Alignment explanation
Indices: 62260447--62260502 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
62260437 GTTATATTTT
*
62260447 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
62260472 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
62260495 CACTATTA
1 CACTATTA
62260503 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:62262528 original size:14 final size:14
Alignment explanation
Indices: 62262490--62262532 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
62262480 CAAAATGTAC
62262490 AATATAATTAAA-T
1 AATATAATTAAATT
62262503 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
62262518 AA-ATAATTTAATT
1 AATATAATTAAATT
62262531 AA
1 AA
62262533 CTGTTTACTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:62267864 original size:22 final size:21
Alignment explanation
Indices: 62267838--62267883 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
62267828 CCTAGTAAGA
62267838 CTTCTCTTCATCTTTTCTATTT
1 CTTCTCTTCATCTTTTCT-TTT
**
62267860 CTTCTCTTTTTCTTTTCTTTT
1 CTTCTCTTCATCTTTTCTTTT
62267881 CTT
1 CTT
62267884 TTTCTTTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.04, C:0.26, G:0.00, T:0.70
Consensus pattern (21 bp):
CTTCTCTTCATCTTTTCTTTT
Found at i:62267869 original size:16 final size:15
Alignment explanation
Indices: 62267842--62267890 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 15
62267832 GTAAGACTTC
62267842 TCTTCATCTTTTCTATT
1 TCTTC-TCTTTTCT-TT
62267859 TCTTCTCTTTTTCTTT
1 TCTTCTC-TTTTCTTT
*
62267875 TCTTTTCTTTTTCTTT
1 TCTTCTC-TTTTCTTT
62267891 GCATCATATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 19 0.63
17 11 0.37
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.73
Consensus pattern (15 bp):
TCTTCTCTTTTCTTT
Found at i:62267875 original size:5 final size:5
Alignment explanation
Indices: 62267848--62267890 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
62267838 CTTCTCTTCA
*
62267848 TCTTT TCTATT TCTTC TCTTTT TCTTT TCTTT TCTTTT TCTTT
1 TCTTT TCT-TT TCTTT TC-TTT TCTTT TCTTT TC-TTT TCTTT
62267891 GCATCATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 19 0.58
6 14 0.42
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:62267886 original size:11 final size:11
Alignment explanation
Indices: 62267848--62267890 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
62267838 CTTCTCTTCA
*
62267848 TCTTTTCTATT
1 TCTTTTCTTTT
*
62267859 TCTTCTCTTTT
1 TCTTTTCTTTT
62267870 TCTTTTC-TTT
1 TCTTTTCTTTT
62267880 TCTTTTTCTTT
1 TC-TTTTCTTT
62267891 GCATCATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 5 0.19
11 20 0.74
12 2 0.07
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (11 bp):
TCTTTTCTTTT
Found at i:62271507 original size:107 final size:107
Alignment explanation
Indices: 62271321--62271534 Score: 376
Period size: 107 Copynumber: 2.0 Consensus size: 107
62271311 AATTGGAAGA
* *
62271321 CTTCTAGCCTTCAACTTGTACACTACCAATTCAAAACTAACCTAGGTCTAATTTTCACGAACACA
1 CTTCTAGCCTTCAACTTGTACACTACCAAATCAAAACTAACCCAGGTCTAATTTTCACGAACACA
*
62271386 GTGCCCTAACTTTTCAAAACCTGCATCC-AAAAGAGAACCTCT
66 ATGCCCTAACTTTTCAAAACCTGCA-CCTAAAAGAGAACCTCT
*
62271428 CTTCTAGCCTTCAACTTGTACACTACCAAATCAAAACTAGCCCAGGTCTAATTTTCACGAACACA
1 CTTCTAGCCTTCAACTTGTACACTACCAAATCAAAACTAACCCAGGTCTAATTTTCACGAACACA
62271493 ATGCCCTAACTTTTCAAAACCTGCACCTAAAAGAGAACCTCT
66 ATGCCCTAACTTTTCAAAACCTGCACCTAAAAGAGAACCTCT
62271535 GTTAAAAAAT
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
106 2 0.02
107 100 0.98
ACGTcount: A:0.34, C:0.30, G:0.09, T:0.26
Consensus pattern (107 bp):
CTTCTAGCCTTCAACTTGTACACTACCAAATCAAAACTAACCCAGGTCTAATTTTCACGAACACA
ATGCCCTAACTTTTCAAAACCTGCACCTAAAAGAGAACCTCT
Found at i:62276302 original size:22 final size:23
Alignment explanation
Indices: 62276277--62276328 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
62276267 TGAATTAATT
62276277 TTAATTTTAAT-TT-AAAAGAACG
1 TTAATTTTAATCTTCAAAAGAA-G
*
62276299 TTAA-TTTAATCTTCAAAATAAG
1 TTAATTTTAATCTTCAAAAGAAG
62276321 TTAATTTT
1 TTAATTTT
62276329 TAAATAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 6 0.23
22 11 0.42
23 9 0.35
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (23 bp):
TTAATTTTAATCTTCAAAAGAAG
Found at i:62280200 original size:6 final size:6
Alignment explanation
Indices: 62280189--62280222 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
62280179 ACAAATTTCT
62280189 AAATAA AAATAA AAATAA AAATAA AAATAA AAAT
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAAT
62280223 GAATTGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:62291913 original size:31 final size:31
Alignment explanation
Indices: 62291875--62291934 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
62291865 TATTCTGGCT
62291875 TTGTTTATTGCTTTATATGCCTTCCATCAAC
1 TTGTTTATTGCTTTATATGCCTTCCATCAAC
62291906 TTGTTTATTGCTTTATATGCCTTCCATCA
1 TTGTTTATTGCTTTATATGCCTTCCATCA
62291935 TGTTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.18, C:0.22, G:0.10, T:0.50
Consensus pattern (31 bp):
TTGTTTATTGCTTTATATGCCTTCCATCAAC
Found at i:62293633 original size:23 final size:23
Alignment explanation
Indices: 62293605--62293652 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
62293595 TTCTTGAATA
*
62293605 ATGGCTCTC-TGAAGCTTCCTGAT
1 ATGGCTCGCTTGAA-CTTCCTGAT
62293628 ATGGCTCGCTTGAACTTCCTGAT
1 ATGGCTCGCTTGAACTTCCTGAT
62293651 AT
1 AT
62293653 ATGGCTGTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (23 bp):
ATGGCTCGCTTGAACTTCCTGAT
Found at i:62293804 original size:25 final size:25
Alignment explanation
Indices: 62293689--62293804 Score: 67
Period size: 25 Copynumber: 4.7 Consensus size: 25
62293679 TGGCTCTTCG
* * *
62293689 GAGCTACCCGTTAT-TGGATCACAT
1 GAGCTTCCTGTTATATGGCTCACAT
* * **
62293713 GAGCTTCTTGAT-TATGGCTCTTAT
1 GAGCTTCCTGTTATATGGCTCACAT
* **
62293737 GAGCTTCCTATTATACAGCTCGA-AT
1 GAGCTTCCTGTTATATGGCTC-ACAT
* * ** *
62293762 AAGCATCCCATTACATGGCTCACAT
1 GAGCTTCCTGTTATATGGCTCACAT
62293787 GAGCTTCCTGTTATATGG
1 GAGCTTCCTGTTATATGG
62293805 TTCGAGAGAG
Statistics
Matches: 64, Mismatches: 24, Indels: 7
0.67 0.25 0.07
Matches are distributed among these distances:
23 1 0.02
24 25 0.39
25 38 0.59
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (25 bp):
GAGCTTCCTGTTATATGGCTCACAT
Found at i:62297328 original size:29 final size:30
Alignment explanation
Indices: 62297281--62297348 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
62297271 TTGCCCAAGA
* *
62297281 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
62297311 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
62297341 GAAAATAT
1 GTAAATAT
62297349 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:62299824 original size:46 final size:46
Alignment explanation
Indices: 62299772--62299999 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
62299762 AGTATGCTCT
*
62299772 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
62299818 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
62299864 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
62299910 CTGATATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
62299956 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
62300000 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:62304604 original size:21 final size:22
Alignment explanation
Indices: 62304557--62304619 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 22
62304547 CAGAAGTAGT
62304557 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
***
62304579 A-ACGACACATGTGGTGCCT-A
1 ATACGACACATAAAGTGCCTGA
* * *
62304599 ATACGAAATATATAGTGCCTG
1 ATACGACACATAAAGTGCCTG
62304620 CCGGCAAAGT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (22 bp):
ATACGACACATAAAGTGCCTGA
Found at i:62305458 original size:5 final size:5
Alignment explanation
Indices: 62305446--62305504 Score: 54
Period size: 5 Copynumber: 12.0 Consensus size: 5
62305436 TTACTTTACC
*
62305446 ATAT- ATATA ATATA ATAATA ATAT- A-ATA ATATAA TATATA ATAAA
1 ATATA ATATA ATATA AT-ATA ATATA ATATA ATAT-A -ATATA ATATA
62305491 ATATA ATA-A ATATA
1 ATATA ATATA ATATA
62305505 TTTATTATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
3 2 0.04
4 10 0.22
5 23 0.50
6 7 0.15
7 4 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
ATATA
Found at i:62305521 original size:3 final size:3
Alignment explanation
Indices: 62305452--62305499 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
62305442 TACCATATAT
62305452 ATA AT- ATA ATA ATA AT- ATA ATA AT- ATA ATA TATA ATA A-A AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
62305493 ATA ATA A
1 ATA ATA A
62305500 ATATATTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
2 10 0.26
3 26 0.67
4 3 0.08
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:62306139 original size:20 final size:20
Alignment explanation
Indices: 62306093--62306139 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
62306083 AGTCCTTTTT
*
62306093 CCTAATTTCTCCTAATTAAG
1 CCTAATTTCACCTAATTAAG
62306113 -CTAAATTT-ACCTAATTAAAG
1 CCT-AATTTCACCTAATT-AAG
62306133 CCTAATT
1 CCTAATT
62306140 AGACACACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 9 0.39
20 12 0.52
21 2 0.09
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.38
Consensus pattern (20 bp):
CCTAATTTCACCTAATTAAG
Found at i:62311154 original size:17 final size:18
Alignment explanation
Indices: 62311127--62311163 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
62311117 ATAATAGTAA
62311127 TAATAAAATGTTAATA-AG
1 TAATAAAATG-TAATATAG
62311145 TAAT-AAATGTAATATAG
1 TAATAAAATGTAATATAG
62311162 TA
1 TA
62311164 CTAGAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 9 0.50
18 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (18 bp):
TAATAAAATGTAATATAG
Found at i:62311721 original size:3 final size:3
Alignment explanation
Indices: 62311449--62311710 Score: 89
Period size: 3 Copynumber: 89.0 Consensus size: 3
62311439 TTGCATTAAC
* * * * * *
62311449 AAT AAT AAT AGT AAG AAT AAT AAC GAT AAT -AT AAC AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
62311496 AA- AA- AAT AAT AAC AAT AAT AGA- AAT AAT AAA AAT AAA AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
62311538 AA- AAGGT AACG AA- AAT AAT ACT GAC ACT AAC AAT AAT ACT AAT AAT
1 AAT AA--T AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
62311584 AAC AAT -AT ATT AAT AAT ACT GAT -AT ATT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
62311630 AAT AAT AGT AGT AGT AGT AGA- AAT AAC AAT CAT -AT AAGT AGT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT
* ** *
62311675 AAT ACA- CAT AGG AAT AAT AAT AAT AAT AGT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
62311711 TTGAATAATA
Statistics
Matches: 187, Mismatches: 56, Indels: 32
0.68 0.20 0.12
Matches are distributed among these distances:
2 21 0.11
3 158 0.84
4 6 0.03
5 2 0.01
ACGTcount: A:0.60, C:0.06, G:0.08, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:62316803 original size:18 final size:20
Alignment explanation
Indices: 62316767--62316807 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
62316757 ACTTGTAAGT
62316767 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
62316787 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
62316806 AT
1 AT
62316808 GATAAAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:62317326 original size:50 final size:50
Alignment explanation
Indices: 62317160--62317555 Score: 334
Period size: 50 Copynumber: 7.9 Consensus size: 50
62317150 ATCCATTGTG
* * *
62317160 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
* * * * * * * *
62317210 GGTCGCATGTGTAGTACTAAGTCCAGGCAACTATGCGTACTC-GTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CAGAT-AGTTA
* * * * *
62317260 TGATCACGTATGTAGTACTAAGTGCA-GCGTACTACGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGC-TACTATGTGTACCAGATAGTTA
* *
62317311 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
* * * * * * * *
62317361 GGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-AGTTA
* * *
62317411 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
* * ** * *
62317462 AGTCACGCGTGTAGTACTAAGTGCAGGGTACTACATGTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
* ** **
62317512 GGTTGCCAGTGTAGTACTAAGTGCAGGCTACTAT-TCGTACCAGA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGT-GTACCAGA
62317556 GAGCTTCGGT
Statistics
Matches: 271, Mismatches: 64, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
49 1 0.00
50 198 0.73
51 72 0.27
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTA
Found at i:62317338 original size:101 final size:101
Alignment explanation
Indices: 62317162--62317350 Score: 272
Period size: 101 Copynumber: 1.9 Consensus size: 101
62317152 CCATTGTGAG
* * * *
62317162 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
62317227 TAAGTCCAGGCAACTATGCGTACTCGTTAACTTTGA
66 TAAGTCCAGGCAACTATGCGTACTCGTTAACTTTGA
* * *
62317263 TCACGTATGTAGTACTAAGTGCA-GCGTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTA
1 TCACGTATGTAGTACTAAGTGCAGGC-TACTACGTGTACCAGATGGATAAGTCACATGTGTAGTA
* * *
62317327 CTAAGTGCAGGCTACTATGTGTAC
65 CTAAGTCCAGGCAACTATGCGTAC
62317351 CAGATTGATA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 2 0.03
101 75 0.97
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTCCAGGCAACTATGCGTACTCGTTAACTTTGA
Found at i:62317370 original size:151 final size:151
Alignment explanation
Indices: 62317160--62317552 Score: 637
Period size: 151 Copynumber: 2.6 Consensus size: 151
62317150 ATCCATTGTG
62317160 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * *
62317225 ACTAAGTCCAGGCAACTATGCGTACTCGTTAACTTTGATCACGTATGTAGTACTAAGTGCA-GCG
66 ACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGATCACGTATGTAGTACTAAGTGCAGGC-
62317289 TACTACGTGTATCAGATGGTTA
130 TACTACGTGTATCAGATGGTTA
*
62317311 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
62317376 ACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGATCACGTATGTAGTACTAAGTGCAGGCT
*
62317441 ACTATGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* * * *
62317462 AGTCACGCGTGTAGTACTAAGTGCAGGGTACTACATGTACCAGATTGATAGGTTGCCA-GTGTAG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCG-CATGTGTAG
* *
62317526 TACTAAGTGCAGGCTACTATTCGTACC
65 TACTAAGTACAGGCTACTATGCGTACC
62317553 AGAGAGCTTC
Statistics
Matches: 226, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
151 222 0.98
152 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTACAGGCTACTATGCGTACCCGTTAACTTCGATCACGTATGTAGTACTAAGTGCAGGCT
ACTACGTGTATCAGATGGTTA
Found at i:62317418 original size:101 final size:101
Alignment explanation
Indices: 62317313--62317494 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
62317303 GATGGTTAAG
* * * *
62317313 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGATAAGTCACACGTGTAGTAC
62317378 TAAGTACAGGCTACTATGCGTACCCGTTAACTTCGA
66 TAAGTACAGGCTACTATGCGTACCCGTTAACTTCGA
* * *
62317414 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAAGTCACGCGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGATAAGTCACACGTGTAGTAC
* *
62317479 TAAGTGCAGGGTACTA
66 TAAGTACAGGCTACTA
62317495 CATGTACCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGATAAGTCACACGTGTAGTAC
TAAGTACAGGCTACTATGCGTACCCGTTAACTTCGA
Found at i:62324387 original size:40 final size:40
Alignment explanation
Indices: 62324293--62324517 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
62324283 TATTCGAATA
* ** * *
62324293 ATATCCGGGCTAAGTCCCGAAGGTTTTTGTGATAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * *
62324334 ATAAT-CGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 AT-ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
* *
62324374 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
62324414 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
62324454 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
62324494 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
62324518 CTTGTGCAAG
Statistics
Matches: 155, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 125 0.81
41 25 0.16
42 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:62324465 original size:80 final size:80
Alignment explanation
Indices: 62324293--62324553 Score: 278
Period size: 80 Copynumber: 3.3 Consensus size: 80
62324283 TATTCGAATA
** * * *
62324293 ATATCCGGGCTAAGTCCCGAAGGTTTTTGTGATAGGTGACTATAAT-CGGACTAAGATCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTAT-ATCCGGGCTAAGACCCGAAGG
*
62324357 CATTCGTGCGAGTTGCT
64 CATTCGTGCGAGTCGCT
* * * * *
62324374 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
62324439 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
62324454 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
62324519 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
62324533 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
62324554 ATTACTTGAG
Statistics
Matches: 151, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
78 14 0.09
79 16 0.11
80 92 0.61
81 29 0.19
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:62324507 original size:120 final size:120
Alignment explanation
Indices: 62324293--62324553 Score: 291
Period size: 120 Copynumber: 2.2 Consensus size: 120
62324283 TATTCGAATA
* ** *
62324293 ATATCCGGGCTAAGTCCCGAAGGTTTTTGTGATAGGTGACTATAATCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGATAGGCGACTATAATCGGACTAAGATCCGAAGGC
* * * * * *
62324358 ATTCGTGCGAGTTGCTATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
62324414 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTAT-ATCCGGGCTAAG-TCCCGAAG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGATAGGCGACTATAAT-CGGACTAAGAT-CCGAAG
* * *
62324476 GCATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
64 GCATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
62324533 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
62324554 ATTACTTGAG
Statistics
Matches: 119, Mismatches: 17, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
118 15 0.13
119 21 0.18
120 54 0.45
121 29 0.24
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGATAGGCGACTATAATCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:62329207 original size:40 final size:40
Alignment explanation
Indices: 62329162--62329313 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
62329152 ATAACCACAA
* * *
62329162 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
62329202 GCACAAATGCTTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
62329242 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
62329282 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
62329314 CATTCAAATG
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:62336970 original size:40 final size:39
Alignment explanation
Indices: 62336862--62337072 Score: 246
Period size: 40 Copynumber: 5.3 Consensus size: 39
62336852 TCTTCGGAAT
* * *
62336862 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
* * *
62336901 TTAACCCGG-TATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
*
62336940 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
62336980 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * *
62337020 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
62337060 TTAGCCCGGATAT
1 TTAGCCCGGATAT
62337073 CATTCAAATG
Statistics
Matches: 156, Mismatches: 12, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 35 0.22
40 115 0.74
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:62338413 original size:20 final size:17
Alignment explanation
Indices: 62338388--62338526 Score: 104
Period size: 16 Copynumber: 7.7 Consensus size: 17
62338378 CTCACACACA
* *
62338388 TTCTTTTTGTTTTTGTT
1 TTCTTTTTTTTTTTTTT
62338405 TTCTTCTTTTTTTTTTTT
1 TTCTT-TTTTTTTTTTTT
*
62338423 TT-TTTTTTTTTTTTCCT
1 TTCTTTTTTTTTTTT-TT
*
62338440 TCCATTTTTCATTTTTATTTT
1 TTC-TTTTT--TTTTT-TTTT
*
62338461 TGCCCTGCTTTTTTTTTTTTT
1 T--TCT--TTTTTTTTTTTTT
62338482 TT-TTTTTTTTTTTTTT
1 TTCTTTTTTTTTTTTTT
62338498 TT-TTTTTTTTTTTTTT
1 TTCTTTTTTTTTTTTTT
*
62338514 TTATTTTATTTTT
1 TTCTTTT-TTTTT
62338527 CCATTAATCG
Statistics
Matches: 103, Mismatches: 6, Indels: 25
0.77 0.04 0.19
Matches are distributed among these distances:
16 41 0.40
17 13 0.13
18 18 0.17
19 5 0.05
21 12 0.12
22 8 0.08
23 2 0.02
24 4 0.04
ACGTcount: A:0.04, C:0.09, G:0.03, T:0.85
Consensus pattern (17 bp):
TTCTTTTTTTTTTTTTT
Found at i:62338455 original size:1 final size:1
Alignment explanation
Indices: 62338391--62338436 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
62338381 ACACACATTC
* * * *
62338391 TTTTTGTTTTTGTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
62338437 CCTTCCATTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.04, G:0.04, T:0.91
Consensus pattern (1 bp):
T
Found at i:62338473 original size:1 final size:1
Alignment explanation
Indices: 62338469--62338526 Score: 98
Period size: 1 Copynumber: 58.0 Consensus size: 1
62338459 TTTGCCCTGC
* *
62338469 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTATTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
62338527 CCATTAATCG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:62349614 original size:40 final size:40
Alignment explanation
Indices: 62349569--62349760 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 40
62349559 ATAACCACAA
* * *
62349569 GCACAATTGCCTTCGGGTCTTAACCGGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
62349609 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * *
62349649 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
62349689 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
62349729 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
62349761 CATTCAAATG
Statistics
Matches: 141, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 136 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:62349653 original size:80 final size:80
Alignment explanation
Indices: 62349540--62349759 Score: 230
Period size: 80 Copynumber: 2.8 Consensus size: 80
62349530 ACCCAAGTTT
* * * * * * * * *
62349540 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCGGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAAG
*
62349603 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * * *
62349619 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAA
* *
62349683 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* * *
62349699 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATA
62349760 TCATTCAAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
79 12 0.10
80 97 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAAG
CACTAGCACAAATGC
Found at i:62351152 original size:21 final size:21
Alignment explanation
Indices: 62351128--62351167 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
62351118 TTTCTTCCTT
*
62351128 CCATTCTTATTAGTTTATTGC
1 CCATGCTTATTAGTTTATTGC
* *
62351149 CCATGCTTCTTATTTTATT
1 CCATGCTTATTAGTTTATT
62351168 TTTCCATTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.20, G:0.07, T:0.55
Consensus pattern (21 bp):
CCATGCTTATTAGTTTATTGC
Found at i:62357364 original size:40 final size:40
Alignment explanation
Indices: 62357319--62357510 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
62357309 ATAACCACAA
* * *
62357319 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
62357359 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
62357399 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
62357439 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
62357479 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
62357511 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:62357403 original size:80 final size:80
Alignment explanation
Indices: 62357290--62357509 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
62357280 ACCCAAGTTT
* * * * * * * * *
62357290 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
62357353 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
62357369 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
62357433 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
62357449 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
62357510 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:62364052 original size:40 final size:40
Alignment explanation
Indices: 62363928--62364152 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
62363918 TATTCGAATA
* *
62363928 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * *
62363969 ATAACCGGACTAAGATCCGAAGGCATTCGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGACT
* ** *
62364009 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
62364049 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
62364089 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
62364129 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
62364153 CTTGTGTAAG
Statistics
Matches: 155, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
40 126 0.81
41 29 0.19
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:62364102 original size:80 final size:80
Alignment explanation
Indices: 62363928--62364188 Score: 278
Period size: 80 Copynumber: 3.3 Consensus size: 80
62363918 TATTCGAATA
* * * *
62363928 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
62363993 ATTCGTGTGAGTTGCT
65 ATTCGTGTGAGTCGCT
* * ** * *
62364009 ATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCAATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
62364074 TTTGTGCT-AG-CGACT
66 TTCGTG-TGAGTCG-CT
* * * *
62364089 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
62364154 TT-GTGTAAGTAGTT
66 TTCGTGTGAGTCGCT
* *
62364168 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
62364189 ATTACTTGAG
Statistics
Matches: 150, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
78 16 0.11
79 11 0.07
80 91 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGTGAGTCGCT
Found at i:62364144 original size:120 final size:121
Alignment explanation
Indices: 62363928--62364152 Score: 296
Period size: 120 Copynumber: 1.9 Consensus size: 121
62363918 TATTCGAATA
** * *
62363928 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * *
62363993 ATTCGTGTGAGTTGCTATATCCTGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
66 ATTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
* *
62364049 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
62364112 CATTTATGCT-AG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATG-TGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
62364153 CTTGTGTAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
119 3 0.03
120 55 0.61
121 32 0.36
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
Found at i:62368809 original size:26 final size:29
Alignment explanation
Indices: 62368745--62368814 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
62368735 GTCGTTTCTC
*
62368745 TTTTCTCCTCTACTGGCGTTCATCTCTTA
1 TTTTCTCCTCCACTGGCGTTCATCTCTTA
* * *
62368774 TTTTCCCCTCCATTGTCGTTCA-C-C-TA
1 TTTTCTCCTCCACTGGCGTTCATCTCTTA
62368800 TTTTCTCCTCCACTG
1 TTTTCTCCTCCACTG
62368815 CTATTTGCCT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
26 15 0.43
27 1 0.03
28 1 0.03
29 18 0.51
ACGTcount: A:0.10, C:0.36, G:0.09, T:0.46
Consensus pattern (29 bp):
TTTTCTCCTCCACTGGCGTTCATCTCTTA
Found at i:62371043 original size:4 final size:4
Alignment explanation
Indices: 62371036--62371077 Score: 50
Period size: 4 Copynumber: 10.0 Consensus size: 4
62371026 TTTTTGCTTG
62371036 TAAA TAAA TAAA -AAA TAAAA TGAAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA T-AAA T--AAA TAAA TAAA TAAA TAAA
62371078 GGCTCATGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 3 0.09
4 23 0.66
5 4 0.11
6 5 0.14
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (4 bp):
TAAA
Found at i:62376936 original size:14 final size:14
Alignment explanation
Indices: 62376917--62376950 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
62376907 ACCCGAAGTG
*
62376917 GATGATATGATTAT
1 GATGATATGACTAT
*
62376931 GATGATATTACTAT
1 GATGATATGACTAT
62376945 GATGAT
1 GATGAT
62376951 GAAAGTCGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (14 bp):
GATGATATGACTAT
Found at i:62378708 original size:48 final size:47
Alignment explanation
Indices: 62378634--62378958 Score: 262
Period size: 48 Copynumber: 6.8 Consensus size: 47
62378624 ATATGTGTGT
* * * *
62378634 GCCAGCGTAAGACCATGTTTGAAACATGGCATCGACGATGTAATAAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC-ATGTAATGAGA
** * *
62378682 GCCAGCATAAGACCATGTTTGGAACATGGAATC-TCTAATGTAATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC--ATGTAATGAGA
* * * * * * * *
62378730 GCTAGTGTAGGACCATGTCTGGGACATGGCGTCGTCAT-TGATATGTGC
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATGT-A-ATGAGA
* * ** *
62378778 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGG-CATGTAATGAGA
** * *
62378826 GCCAACGTAAGACCAAGTTTGGGACATGGCATCGGCAT-TGAGATGAGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATGT-A-ATGAGA
* * * * *
62378874 GCTAGTGTAAGACCATGTTTGGGAGATGGCATCGGCCT-TGACATGTGA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATGT-A-ATGAGA
62378922 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
1 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
62378959 ATGGTTTCAG
Statistics
Matches: 225, Mismatches: 44, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
46 2 0.01
47 6 0.03
48 212 0.94
49 4 0.02
50 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATGTAATGAGA
Found at i:62378903 original size:144 final size:144
Alignment explanation
Indices: 62378629--62378957 Score: 392
Period size: 144 Copynumber: 2.3 Consensus size: 144
62378619 GGGTGATATG
* * * * * ** *
62378629 TGTGTGCCAGCGTAAGACCATGTTTGAAACATGGCATCGACGATGTAATAAGAGCCAGCATAAGA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATAATAAGAGCCAACATAAGA
* * *
62378694 CCATGTTTGGAACATGGAATCTCTAATGTAATGAGAGCTAGTGTAGGACCATGTCTGGGACATGG
66 CCAAGTTTGGAACATGGAATCGCTAATGTAATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
* * *
62378759 CGTCGTCATTGATA
131 CATCGGCATTGACA
* * * * * *
62378773 TGTGCGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGAGCCAACGTAAGA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATAATAAGAGCCAACATAAGA
* * * * *
62378838 CCAAGTTTGGGACATGGCATCGGC-ATTG-AGATGAGAGCTAGTGTAAGACCATGTTTGGGAGAT
66 CCAAGTTTGGAACATGGAATC-GCTAATGTA-ATGAGAGCTAGTGTAAGACCATGTCTGGGACAT
*
62378901 GGCATCGGCCTTGACA
129 GGCATCGGCATTGACA
62378917 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
62378958 AATGGTTTCA
Statistics
Matches: 155, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
143 1 0.01
144 153 0.99
145 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (144 bp):
TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATAATAAGAGCCAACATAAGA
CCAAGTTTGGAACATGGAATCGCTAATGTAATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
CATCGGCATTGACA
Found at i:62380105 original size:21 final size:21
Alignment explanation
Indices: 62380072--62380111 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
62380062 TTAAGAAGCC
*
62380072 ACACGGGCATGTTGCCCTGCT
1 ACACGGGCATGTTCCCCTGCT
**
62380093 ACACGGGTGTGTTCCCCTG
1 ACACGGGCATGTTCCCCTG
62380112 TCTGCTTGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.12, C:0.33, G:0.30, T:0.25
Consensus pattern (21 bp):
ACACGGGCATGTTCCCCTGCT
Found at i:62380571 original size:15 final size:15
Alignment explanation
Indices: 62380551--62380594 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
62380541 TATGATATTG
62380551 TATTTTGGATTTCTC
1 TATTTTGGATTTCTC
*
62380566 TATTTTGGATTCCTC
1 TATTTTGGATTTCTC
*
62380581 TATTTTGGTTTTCT
1 TATTTTGGATTTCT
62380595 TGTCATCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.11, C:0.14, G:0.14, T:0.61
Consensus pattern (15 bp):
TATTTTGGATTTCTC
Found at i:62383756 original size:45 final size:44
Alignment explanation
Indices: 62383682--62383767 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 44
62383672 GAACTATGTG
62383682 ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGACATATGTGAC
1 ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGACATATGTGAC
*
62383726 ATCTGAACTCATTGAGGTT-TGGTCTGAGTTCATGATATATGT
1 ATCTGAACTCA-TGA-GTTGTGGTCTGAGTTCATGACATATGT
62383768 TACACATGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
44 11 0.28
45 25 0.64
46 3 0.08
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.37
Consensus pattern (44 bp):
ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGACATATGTGAC
Found at i:62390181 original size:6 final size:6
Alignment explanation
Indices: 62390172--62390239 Score: 63
Period size: 6 Copynumber: 12.0 Consensus size: 6
62390162 CTAAGAAAAT
* * * * *
62390172 AATAAA AAT--A ACTAAA AATAAC AATAAA CATAAA CAT-TA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
62390217 AATAAA AATAAA AAT-AA AATAAA
1 AATAAA AATAAA AATAAA AATAAA
62390240 TAAACTTAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
4 3 0.06
5 8 0.16
6 39 0.78
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:62390220 original size:23 final size:23
Alignment explanation
Indices: 62390172--62390239 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
62390162 CTAAGAAAAT
** *
62390172 AATAAAAATAACTA-AAAATAAC
1 AATAAAAATAAAAATAAAATAAA
* * *
62390194 AATAAACATAAACATTAAATAAA
1 AATAAAAATAAAAATAAAATAAA
62390217 AATAAAAATAAAAATAAAATAAA
1 AATAAAAATAAAAATAAAATAAA
62390240 TAAACTTAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
22 11 0.30
23 26 0.70
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (23 bp):
AATAAAAATAAAAATAAAATAAA
Found at i:62391695 original size:18 final size:17
Alignment explanation
Indices: 62391672--62391705 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
62391662 ACTAGCTAAG
62391672 AAATAATAATGAAGAAAA
1 AAATAATAA-GAAGAAAA
62391690 AAATAATAAGAAGAAA
1 AAATAATAAGAAGAAA
62391706 CGAAGTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (17 bp):
AAATAATAAGAAGAAAA
Found at i:62391784 original size:17 final size:18
Alignment explanation
Indices: 62391752--62391786 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
62391742 ACTACTAGTA
62391752 AAAATAAATTAAAATAAT
1 AAAATAAATTAAAATAAT
*
62391770 AAAAT-AATTATAATAAT
1 AAAATAAATTAAAATAAT
62391787 TATAATGGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATAAATTAAAATAAT
Found at i:62394056 original size:8 final size:8
Alignment explanation
Indices: 62394038--62394089 Score: 50
Period size: 9 Copynumber: 6.0 Consensus size: 8
62394028 GCAGGGGAAG
*
62394038 GAAAGAAA
1 GAAAAAAA
*
62394046 GAAAAAGA
1 GAAAAAAA
62394054 GAAAAGAAA
1 GAAAA-AAA
62394063 GAAAAAAAGA
1 G-AAAAAA-A
62394073 GAAAAGAAA
1 GAAAA-AAA
62394082 GAAAAAAA
1 GAAAAAAA
62394090 AGGGAAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
8 14 0.38
9 15 0.41
10 8 0.22
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (8 bp):
GAAAAAAA
Found at i:62394104 original size:21 final size:20
Alignment explanation
Indices: 62394038--62394097 Score: 95
Period size: 19 Copynumber: 3.0 Consensus size: 20
62394028 GCAGGGGAAG
62394038 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAA-AAAAAGAGAAAA
62394059 GAAAG-AAAAAAAGAGAAAA
1 GAAAGAAAAAAAAGAGAAAA
*
62394078 GAAAGAAAAAAAAGGGAAAA
1 GAAAGAAAAAAAAGAGAAAA
62394098 TTAAAGATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
19 17 0.46
20 15 0.41
21 5 0.14
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (20 bp):
GAAAGAAAAAAAAGAGAAAA
Found at i:62396101 original size:46 final size:46
Alignment explanation
Indices: 62396034--62396261 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
62396024 AGTGTGCTCT
62396034 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
62396080 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
62396126 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
62396172 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
62396218 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
62396262 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:62396592 original size:17 final size:17
Alignment explanation
Indices: 62396540--62396593 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 17
62396530 ATATACATAA
*
62396540 GATATAAGGAAATG-AT
1 GATATAACGAAATGAAT
* * *
62396556 GATA-CATGAAAT-ATT
1 GATATAACGAAATGAAT
62396571 GATATAACGAAATGAAT
1 GATATAACGAAATGAAT
62396588 GATATA
1 GATATA
62396594 TGCTTATGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
15 11 0.38
16 10 0.34
17 8 0.28
ACGTcount: A:0.50, C:0.04, G:0.19, T:0.28
Consensus pattern (17 bp):
GATATAACGAAATGAAT
Found at i:62401703 original size:85 final size:85
Alignment explanation
Indices: 62401553--62401726 Score: 206
Period size: 85 Copynumber: 2.0 Consensus size: 85
62401543 ACCACCGTTG
* *** **
62401553 ATTTGCAATTATTGCCACTTGTTTTGGGTCCACAACATATTTGTAAATTAAATGAACTGCCACTT
1 ATTTGCAATTAGTGCCACTTGTTGAAGGTCCACAACATATTTGTAAATTAAACAAACTGCCACTT
*
62401618 GGCTCGTGATCGAACCACAT
66 GGCTCATGATCGAACCACAT
* * * *
62401638 ATTTGCAATTAGTGCCACTTGTTGAAGGTGCACAACA-AGTTTGTAGATTAAACAAATTGCTACT
1 ATTTGCAATTAGTGCCACTTGTTGAAGGTCCACAACATA-TTTGTAAATTAAACAAACTGCCACT
* **
62401702 TGGTTCATGATCGAACTGCAT
65 TGGCTCATGATCGAACCACAT
62401723 ATTT
1 ATTT
62401727 ACTATTACTA
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
84 1 0.01
85 73 0.99
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (85 bp):
ATTTGCAATTAGTGCCACTTGTTGAAGGTCCACAACATATTTGTAAATTAAACAAACTGCCACTT
GGCTCATGATCGAACCACAT
Found at i:62405829 original size:20 final size:20
Alignment explanation
Indices: 62405801--62405850 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
62405791 ATTATATAAA
*
62405801 TCAATAAACGGATCAACCGG
1 TCAATAAACGGATCAACCAG
*
62405821 TCAAGAAACGGATCAACCAG
1 TCAATAAACGGATCAACCAG
62405841 TCAATAAACG
1 TCAATAAACG
62405851 CGAAAAAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.14
Consensus pattern (20 bp):
TCAATAAACGGATCAACCAG
Found at i:62406059 original size:13 final size:13
Alignment explanation
Indices: 62406041--62406067 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
62406031 TTATAAATTG
62406041 AGGTTTAATTGAT
1 AGGTTTAATTGAT
62406054 AGGTTTAATTGAT
1 AGGTTTAATTGAT
62406067 A
1 A
62406068 AATACAAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
AGGTTTAATTGAT
Found at i:62413234 original size:4 final size:4
Alignment explanation
Indices: 62413227--62413286 Score: 77
Period size: 4 Copynumber: 15.0 Consensus size: 4
62413217 ATGGTTTATT
* * *
62413227 TATG TATG TATG TTTG TATG TATG TACG TATG TAAG TATAG -ATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT-G TATG TATG
62413275 TATG TATG TATG
1 TATG TATG TATG
62413287 AATAAACTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
3 1 0.02
4 46 0.96
5 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:62414858 original size:22 final size:22
Alignment explanation
Indices: 62414827--62414870 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
62414817 AATAACTTAA
*
62414827 GTGGACGAAATGCAATCAACCT
1 GTGGACGAAATGCAACCAACCT
*
62414849 GTGGATGAAATGCAACCAACCT
1 GTGGACGAAATGCAACCAACCT
62414871 AACACGAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (22 bp):
GTGGACGAAATGCAACCAACCT
Found at i:62431598 original size:43 final size:42
Alignment explanation
Indices: 62431533--62431660 Score: 132
Period size: 43 Copynumber: 3.0 Consensus size: 42
62431523 AACTCGTACA
* * * *
62431533 ATGCCATATCCCAAAGATGGTCTTACATGTTATCACATATCG
1 ATGCCATATCCCAGACATGGTCTTACAAGTAATCACATATCG
* * * *
62431575 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCA-ATTAACG
1 ATGCCA-TATCCCAGACATGGTCTTACAAGTAATCACA-TATCG
* *
62431618 ATGCCAATGTTCCAGACATGGTCTTACAAGTAATCACATATCG
1 ATGCC-ATATCCCAGACATGGTCTTACAAGTAATCACATATCG
62431661 GTAACCTAAT
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
42 7 0.10
43 60 0.87
44 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACAAGTAATCACATATCG
Found at i:62439395 original size:10 final size:10
Alignment explanation
Indices: 62439380--62439407 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
62439370 CTTACTGGAG
62439380 ATATTCAAAA
1 ATATTCAAAA
62439390 ATATTCAAAA
1 ATATTCAAAA
62439400 ATATTCAA
1 ATATTCAA
62439408 CGAACCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (10 bp):
ATATTCAAAA
Found at i:62440740 original size:35 final size:35
Alignment explanation
Indices: 62440694--62440762 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
62440684 TTGCTACGTC
*
62440694 CAACATATGAAGGCATAATTTAAACTTAATGATTT
1 CAACATATGAAGGCATAAGTTAAACTTAATGATTT
62440729 CAACATATGAAGGCATAAGTTAAACTTAATGATT
1 CAACATATGAAGGCATAAGTTAAACTTAATGATT
62440763 GTAGCTTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (35 bp):
CAACATATGAAGGCATAAGTTAAACTTAATGATTT
Found at i:62447896 original size:20 final size:22
Alignment explanation
Indices: 62447873--62447920 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
62447863 AATATTTCTA
*
62447873 ATTTTTTAATT-TCTTAAA-AT
1 ATTTTATAATTATCTTAAATAT
*
62447893 ATTTTATAATTATTTTAAATAT
1 ATTTTATAATTATCTTAAATAT
62447915 ATTTTA
1 ATTTTA
62447921 ATATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.42
21 6 0.25
22 8 0.33
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTTTATAATTATCTTAAATAT
Found at i:62447922 original size:20 final size:20
Alignment explanation
Indices: 62447875--62447932 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
62447865 TATTTCTAAT
*
62447875 TTTTTAATT-TCTTAAAATA
1 TTTTTAATTATTTTAAAATA
62447894 TTTTATAATTATTTT-AAATA
1 TTTT-TAATTATTTTAAAATA
*
62447914 TATTTTAA-TATTTAAAAAT
1 T-TTTTAATTATTTTAAAAT
62447933 TTAAAAGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 9 0.27
20 18 0.55
21 6 0.18
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTTAATTATTTTAAAATA
Found at i:62448530 original size:17 final size:16
Alignment explanation
Indices: 62448497--62448543 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
62448487 ATTTTATTTG
*
62448497 AAATTTAATATACTTAT
1 AAATTTAATA-ATTTAT
62448514 AAATTATAATAATTTAT
1 AAATT-TAATAATTTAT
62448531 AAATTTTAATAAT
1 AAA-TTTAATAAT
62448544 ATTTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 20 0.74
18 7 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATTTAATAATTTAT
Found at i:62448562 original size:20 final size:20
Alignment explanation
Indices: 62448517--62448562 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
62448507 TACTTATAAA
62448517 TTATAATAATTTATAAATTT
1 TTATAATAATTTATAAATTT
* *
62448537 TAATAATATTTTA-AAATTGT
1 TTATAATAATTTATAAATT-T
62448557 TTATAA
1 TTATAA
62448563 ATTACGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TTATAATAATTTATAAATTT
Found at i:62449702 original size:29 final size:28
Alignment explanation
Indices: 62449660--62449715 Score: 85
Period size: 30 Copynumber: 1.9 Consensus size: 28
62449650 AAACCTATCT
*
62449660 ACTTTCCCCAAAAATTTTTACTTCCTCCC
1 ACTTTCCCCAAAAACTTTTA-TTCCTCCC
62449689 ACTTTCTCCCAAAAACTTTTATTCCTC
1 ACTTTC-CCCAAAAACTTTTATTCCTC
62449716 TCCCATCCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39
Consensus pattern (28 bp):
ACTTTCCCCAAAAACTTTTATTCCTCCC
Found at i:62449804 original size:30 final size:31
Alignment explanation
Indices: 62449770--62449828 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
62449760 TTTTTTTGAA
*
62449770 TATTTGT-CCCCAAAATTTTACTCTCTCATT
1 TATTTGTCCCCCAAAATTTTACTCCCTCATT
*
62449800 TATTTTTCCCCCAAAATTTTACTCCCTCA
1 TATTTGTCCCCCAAAATTTTACTCCCTCA
62449829 ACTACTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.24, C:0.31, G:0.02, T:0.44
Consensus pattern (31 bp):
TATTTGTCCCCCAAAATTTTACTCCCTCATT
Found at i:62454764 original size:19 final size:21
Alignment explanation
Indices: 62454711--62454768 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 21
62454701 TAACTTCATT
*
62454711 TATTTTAATAAAATAATATTAA
1 TATTTTAATAAAAT-ATATGAA
62454733 TATTTTTATATAAAAT-T-TGAA
1 TA-TTTTA-ATAAAATATATGAA
62454754 TATTTTAATAAAATA
1 TATTTTAATAAAATA
62454769 ATATCTTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
19 7 0.22
20 5 0.16
21 5 0.16
22 3 0.09
23 5 0.16
24 7 0.22
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TATTTTAATAAAATATATGAA
Done.