Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 193 of 316
Found at i:62454777 original size:16 final size:17
Alignment explanation
Indices: 62454752--62454784 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
62454742 ATAAAATTTG
*
62454752 AATATTTTAA-TAAAAT
1 AATATCTTAACTAAAAT
62454768 AATATCTTAACTAAAAT
1 AATATCTTAACTAAAAT
62454785 TTATTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
AATATCTTAACTAAAAT
Found at i:62455385 original size:34 final size:34
Alignment explanation
Indices: 62455312--62455395 Score: 82
Period size: 34 Copynumber: 2.5 Consensus size: 34
62455302 ATTTAGTGTT
**
62455312 ATTTTATAA-AAATTATTTAAATTAGGATTTATGG
1 ATTTTA-AATAAATTAAGTAAATTAGGATTTATGG
* * *
62455346 TTTTTAAATAGATTAAGTAAATTAGGGTTCTA-GG
1 ATTTTAAATAAATTAAGTAAATTAGGATT-TATGG
*
62455380 ATTTTAGATAAATTAA
1 ATTTTAAATAAATTAA
62455396 ATTAGGGTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
33 2 0.05
34 36 0.90
35 2 0.05
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.44
Consensus pattern (34 bp):
ATTTTAAATAAATTAAGTAAATTAGGATTTATGG
Found at i:62455412 original size:22 final size:22
Alignment explanation
Indices: 62455387--62455428 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
62455377 AGGATTTTAG
62455387 ATAAATTAAATTAGGGTTTAAA
1 ATAAATTAAATTAGGGTTTAAA
62455409 ATAAATTAAATTAGGGTTTA
1 ATAAATTAAATTAGGGTTTA
62455429 TGGTTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (22 bp):
ATAAATTAAATTAGGGTTTAAA
Found at i:62455418 original size:86 final size:86
Alignment explanation
Indices: 62455328--62455485 Score: 273
Period size: 86 Copynumber: 1.8 Consensus size: 86
62455318 TAAAAATTAT
*
62455328 TTAAATTAGGATTTATGGTTTTTAAATAGATTAAGTAAATTAGGGTTCTAG-GATTTTAGATAAA
1 TTAAATTAGGATTTATGGTTTTTAAATAGATTAAGTAAATTAGGGCTCTAGAG-TTTTAGATAAA
62455392 TTAAATTAGGGTTTAAAATAAA
65 TTAAATTAGGGTTTAAAATAAA
*
62455414 TTAAATTAGGGTTTATGGTTTTTAAATAGATTAAGTAAATTAGGGCTCTAGAGTTTTAGATAAAT
1 TTAAATTAGGATTTATGGTTTTTAAATAGATTAAGTAAATTAGGGCTCTAGAGTTTTAGATAAAT
*
62455479 TAGATTA
66 TAAATTA
62455486 AGATTTTGGG
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
86 67 0.99
87 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.18, T:0.41
Consensus pattern (86 bp):
TTAAATTAGGATTTATGGTTTTTAAATAGATTAAGTAAATTAGGGCTCTAGAGTTTTAGATAAAT
TAAATTAGGGTTTAAAATAAA
Found at i:62458808 original size:49 final size:49
Alignment explanation
Indices: 62458747--62458877 Score: 174
Period size: 49 Copynumber: 2.7 Consensus size: 49
62458737 ACATCAAAGT
*
62458747 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTG-AGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATA-TGAAGGC
* * * * * *
62458796 CGATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATGAATGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATGAAGGC
*
62458845 CGATGCCATGTCCCAGACAGGTCTTACGCTGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
62458878 ACACATCAAG
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
48 2 0.03
49 68 0.97
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATGAAGGC
Found at i:62460334 original size:37 final size:37
Alignment explanation
Indices: 62460293--62460367 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
62460283 GATAGGTGAG
62460293 AATGAAAATGAATAAATACAAGAAGATTCAGGTATGT
1 AATGAAAATGAATAAATACAAGAAGATTCAGGTATGT
*
62460330 AATGAAAATGAATAAATACAGGAAGATTCAGGTATGT
1 AATGAAAATGAATAAATACAAGAAGATTCAGGTATGT
62460367 A
1 A
62460368 TGATACCTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.51, C:0.05, G:0.20, T:0.24
Consensus pattern (37 bp):
AATGAAAATGAATAAATACAAGAAGATTCAGGTATGT
Found at i:62463311 original size:68 final size:69
Alignment explanation
Indices: 62463235--62463382 Score: 162
Period size: 67 Copynumber: 2.2 Consensus size: 69
62463225 CATCATGTGT
* * * *
62463235 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAACTGAAGGACACC
62463297 ATGTAG
64 ATGTAG
* ** * *
62463303 ACAAGAGAGC-A-ACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAACTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAACTGAAGGACACCAT
62463366 GTAG
66 GTAG
62463370 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
62463383 GAGATAAACT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 20 0.30
65 7 0.11
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (69 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAACTGAAGGACACCAT
GTAG
Found at i:62463339 original size:64 final size:64
Alignment explanation
Indices: 62463259--62463442 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
62463249 AGACATTATG
* *
62463259 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCAACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCAACGAGATAA
* * * * * * *
62463323 ATGTAGCTAGGTCGCATGCGTGGTTCCAACTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCAACGAGAT
62463388 AA
63 AA
* * * *
62463390 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
62463443 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.16
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCAACGAGATAA
Found at i:62467784 original size:64 final size:64
Alignment explanation
Indices: 62467703--62467886 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
62467693 AGACATTGTG
* *
62467703 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
62467767 ATGTAGCTAGGTCGCATGCGTGGTTCCAACTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
62467832 AA
63 AA
* * * *
62467834 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
62467887 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:62470430 original size:19 final size:20
Alignment explanation
Indices: 62470406--62470457 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
62470396 ACTATAGCAA
62470406 CACACAATTT-CAA-TTATTT
1 CACAC-ATTTACAACTTATTT
62470425 CACACATTTACAACTTATTT
1 CACACATTTACAACTTATTT
*
62470445 TACA-ACTTTACAA
1 CACACA-TTTACAA
62470458 AATAGCACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.14
19 9 0.31
20 16 0.55
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (20 bp):
CACACATTTACAACTTATTT
Found at i:62473585 original size:10 final size:10
Alignment explanation
Indices: 62473572--62473597 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
62473562 TATATAAATA
62473572 AAAAATATTC
1 AAAAATATTC
62473582 AAAAATATTC
1 AAAAATATTC
62473592 AAAAAT
1 AAAAAT
62473598 TAAAATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAAATATTC
Found at i:62473597 original size:52 final size:52
Alignment explanation
Indices: 62473495--62473652 Score: 257
Period size: 52 Copynumber: 3.0 Consensus size: 52
62473485 TATAAAATAC
62473495 AAATTAATTAAAATTACATAAATGAAAAAATATTAAACAATATTCAAAAATTA
1 AAATTAATTAAAATTACATAAAT-AAAAAATATTAAACAATATTCAAAAATTA
*
62473548 AAATTAATTAAAATTATATAAATAAAAAATATTCAAA-AATATTCAAAAATTA
1 AAATTAATTAAAATTACATAAATAAAAAATATT-AAACAATATTCAAAAATTA
* *
62473600 AAATTAATTAAAATTACATAAAT-AAAAATATTAAATAATATTCAAAATTTA
1 AAATTAATTAAAATTACATAAATAAAAAATATTAAACAATATTCAAAAATTA
62473651 AA
1 AA
62473653 GTAAACCGTT
Statistics
Matches: 100, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
50 3 0.03
51 25 0.25
52 47 0.47
53 25 0.25
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (52 bp):
AAATTAATTAAAATTACATAAATAAAAAATATTAAACAATATTCAAAAATTA
Found at i:62474180 original size:17 final size:18
Alignment explanation
Indices: 62474160--62474194 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
62474150 ATTTCTTGTA
62474160 AACTTTTA-AAATTTTAT
1 AACTTTTATAAATTTTAT
*
62474177 AACTTTTATATATTTTAT
1 AACTTTTATAAATTTTAT
62474195 TTTTAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (18 bp):
AACTTTTATAAATTTTAT
Found at i:62477287 original size:13 final size:13
Alignment explanation
Indices: 62477269--62477299 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
62477259 GAGAAAAAAA
62477269 TAAATTAATTAAT
1 TAAATTAATTAAT
62477282 TAAATTAATTAAT
1 TAAATTAATTAAT
62477295 TAAAT
1 TAAAT
62477300 GTCTAGGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TAAATTAATTAAT
Found at i:62486950 original size:49 final size:49
Alignment explanation
Indices: 62486863--62487316 Score: 748
Period size: 49 Copynumber: 9.4 Consensus size: 49
62486853 GTATATTTGA
*
62486863 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
*
62486910 ATGAATGTGAAAGTGTATATATATGTGATAAGG-CTGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCT-AATGGCCGATGTG
* *
62486959 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
*
62487008 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
62487057 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
* *
62487106 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATATG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
* *
62487153 ATGAATGTGAAAGTG--TATATATGTGATAAGG-CGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
62487199 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
62487248 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
62487295 ATGAATGTGAAAGTGTATATAT
1 ATGAATGTGAAAGTGTATATAT
62487317 GTGACAGGGC
Statistics
Matches: 383, Mismatches: 15, Indels: 16
0.93 0.04 0.04
Matches are distributed among these distances:
46 26 0.07
47 123 0.32
48 18 0.05
49 215 0.56
50 1 0.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:62491745 original size:93 final size:93
Alignment explanation
Indices: 62491632--62491803 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
62491622 CGCCCATAAG
* *
62491632 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
62491697 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
62491725 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
62491790 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
62491804 TCAATCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:62491800 original size:46 final size:46
Alignment explanation
Indices: 62491625--62491800 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
62491615 TGTAACCCGC
* *
62491625 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
62491671 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
62491721 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
62491764 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
62491801 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:62504079 original size:13 final size:13
Alignment explanation
Indices: 62504061--62504091 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
62504051 TTGAGAAAAA
62504061 TAAATTAATTAAT
1 TAAATTAATTAAT
62504074 TAAATTAATTAAT
1 TAAATTAATTAAT
62504087 TAAAT
1 TAAAT
62504092 GTCTAGGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TAAATTAATTAAT
Found at i:62513598 original size:49 final size:49
Alignment explanation
Indices: 62513511--62513965 Score: 757
Period size: 49 Copynumber: 9.4 Consensus size: 49
62513501 GTATATTTGA
*
62513511 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
*
62513558 ATGAATGTGAAAGTGTATATATATGTGATAAGG-CTGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCT-AATGGCCGATGTG
* *
62513607 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
*
62513656 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
62513705 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
* *
62513754 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATATG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
* *
62513801 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
62513848 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
62513897 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
62513944 ATGAATGTGAAAGTGTATATAT
1 ATGAATGTGAAAGTGTATATAT
62513966 GTGACAGGGC
Statistics
Matches: 385, Mismatches: 15, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
47 150 0.39
48 2 0.01
49 232 0.60
50 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:62513619 original size:96 final size:96
Alignment explanation
Indices: 62513511--62513965 Score: 763
Period size: 96 Copynumber: 4.7 Consensus size: 96
62513501 GTATATTTGA
*
62513511 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
62513576 ATATATGTGATAAGG-CTGAATGGCCAATGTG
66 ATATATGTGATAAGGCCT-AATGGCCGATGTG
* *
62513607 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
62513672 ATATATATGTGATAAGGCCTAATGGCCGATATG
64 ATATATATGTGATAAGGCCTAATGGCCGATGTG
62513705 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
62513769 -TATATATGTGATAAGGCCTAATAGCCGATATG
64 ATATATATGTGATAAGGCCTAATGGCCGATGTG
* *
62513801 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62513866 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
62513897 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62513962 ATAT
66 ATAT
62513966 GTGACAGGGC
Statistics
Matches: 340, Mismatches: 14, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
94 45 0.13
96 158 0.46
98 135 0.40
99 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:62518411 original size:93 final size:93
Alignment explanation
Indices: 62518298--62518469 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
62518288 CGCCCATAAG
***
62518298 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
62518363 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
62518391 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
62518456 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
62518470 TCAATCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:62518485 original size:46 final size:46
Alignment explanation
Indices: 62518291--62518471 Score: 206
Period size: 46 Copynumber: 3.9 Consensus size: 46
62518281 TGTAACCCGC
* * *
62518291 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
*
62518337 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCG---CAT
* * * ***
62518387 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
*
62518430 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC
62518472 AATCATCCTA
Statistics
Matches: 112, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 70 0.62
47 30 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
Found at i:62520463 original size:48 final size:48
Alignment explanation
Indices: 62520372--62520497 Score: 184
Period size: 48 Copynumber: 2.7 Consensus size: 48
62520362 TATTTGTGCA
* *
62520372 CTAGTGTAAGA-CATATTTGGGACAT-ACATCGACCACATTATGAGAG
1 CTAGTGTAAGACCATGTTTGGGACATGACATTGACCACATTATGAGAG
* * *
62520418 CTAGTGTAAGACCATGTCTCGGACATGACATTGGCCACATTATGAGAG
1 CTAGTGTAAGACCATGTTTGGGACATGACATTGACCACATTATGAGAG
*
62520466 CCAGTGTAAGACCATGTTTGGGACATGACATT
1 CTAGTGTAAGACCATGTTTGGGACATGACATT
62520498 AGGATTGAGA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
46 11 0.16
47 11 0.16
48 48 0.69
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTTTGGGACATGACATTGACCACATTATGAGAG
Found at i:62520601 original size:46 final size:44
Alignment explanation
Indices: 62520519--62520635 Score: 123
Period size: 46 Copynumber: 2.6 Consensus size: 44
62520509 GAGAGCTAGT
62520519 GTAAGACAT-TCTGGGACATGCATCGGCCTCTAGATGTAAGCCAAA
1 GTAAGACATGTCTGGGACATGCATCGGCCTCTAGATGT--GCCAAA
* **
62520564 GTAAGACATGTCTGGGACATGCATTGG-CTAC-ATGATGTGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCT-CTA-GATGTGCCAAA
*
62520608 GTAAGACCATGTCTAGGACATGGCATCG
1 GTAAGA-CATGTCTGGGACAT-GCATCG
62520636 CCTTAACGTG
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
44 10 0.16
45 25 0.40
46 27 0.44
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (44 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCTAGATGTGCCAAA
Found at i:62521873 original size:20 final size:21
Alignment explanation
Indices: 62521835--62521873 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
62521825 TTATAATGAA
62521835 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
62521856 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
62521874 GTTTCAAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.31, T:0.21
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:62526767 original size:49 final size:48
Alignment explanation
Indices: 62526697--62526883 Score: 239
Period size: 49 Copynumber: 3.8 Consensus size: 48
62526687 TGAGGTCATG
* *
62526697 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GTCGCA
* * * ***
62526746 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTG-TCGCA
62526796 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GTCGCA
* * *
62526845 TGTGTAGTACTAACTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
62526884 GCCTTGTCTA
Statistics
Matches: 119, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
49 77 0.65
50 42 0.35
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGTCGCA
Found at i:62526863 original size:99 final size:99
Alignment explanation
Indices: 62526692--62526883 Score: 339
Period size: 99 Copynumber: 1.9 Consensus size: 99
62526682 TATTATGAGG
* *
62526692 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTAGTCGCATGTGTAGTACT
1 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACT
* *
62526757 AAGTGCAGGCTACTATGCGTACCCGATAACTTGA
66 AACTGCAGGCTACTATGCGTACCAGATAACTTGA
*
62526791 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACT
62526856 AACTGCAGGCTACTATGCGTACCAGATA
66 AACTGCAGGCTACTATGCGTACCAGATA
62526884 GCCTTGTCTA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 88 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (99 bp):
TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACT
AACTGCAGGCTACTATGCGTACCAGATAACTTGA
Found at i:62530370 original size:38 final size:38
Alignment explanation
Indices: 62530295--62530484 Score: 211
Period size: 38 Copynumber: 4.9 Consensus size: 38
62530285 GAATCTAGTC
* * * *
62530295 ACCAGCACAAAACCTGTGGGACTTTAAGCTCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
*
62530335 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
62530373 TCCAGCACGAAGCCTGCGGTATTTAACTCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
62530411 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
62530449 TCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
62530485 CACATCAAAT
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 93 0.72
39 10 0.08
40 25 0.19
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:62530463 original size:76 final size:77
Alignment explanation
Indices: 62530317--62530484 Score: 250
Period size: 76 Copynumber: 2.2 Consensus size: 77
62530307 CCTGTGGGAC
* *
62530317 TTTAAGCTCGGATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCACG
1 TTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATTCCAGCACG
62530382 AAGCCTGCGGTA
66 AAGCCTGCGGTA
* *
62530394 TTTAA-CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATTCCAGCA-T
1 TTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATTCCAGCACG
*
62530457 ATAGCCTGCGGGTC
66 A-AGCCTGC-GGTA
*
62530471 TTTAAGCCCGGATA
1 TTTAAGCTCGGATA
62530485 CACATCAAAT
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
75 1 0.01
76 61 0.74
77 13 0.16
78 7 0.09
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.25
Consensus pattern (77 bp):
TTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATTCCAGCACG
AAGCCTGCGGTA
Found at i:62534116 original size:38 final size:38
Alignment explanation
Indices: 62534071--62534230 Score: 214
Period size: 38 Copynumber: 4.2 Consensus size: 38
62534061 ACTTTAAGCT
*
62534071 CGGATATAATACCAGCACTAAGCCTGCGGGATTTAACC
1 CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
* *
62534109 CGGATATAATACCAGCACGAAGCCTGTGGGATTTAACT
1 CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
*
62534147 CGGATATATTACCAGCACGAAGCCTGCGGGATTTAACC
1 CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
* * * *
62534185 CAGATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCC
1 CGGATATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CC
62534225 CGGATA
1 CGGATA
62534231 CACATCAAAT
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
37 1 0.01
38 94 0.88
39 5 0.05
40 7 0.07
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (38 bp):
CGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
Found at i:62534210 original size:76 final size:78
Alignment explanation
Indices: 62534041--62534201 Score: 245
Period size: 76 Copynumber: 2.1 Consensus size: 78
62534031 GAATCTAGTC
* * *
62534041 ACCAGCACAAAACCTGTGGAACTTTAAGCTCGGATATAATACCAGCACTAAGCCTGCGGGATTTA
1 ACCAGCACGAAGCCTGTGGAACTTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTA
*
62534106 ACCCGGATATAAT
66 ACCCAGATATAAT
* *
62534119 ACCAGCACGAAGCCTGTGGGA-TTTAA-CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTA
1 ACCAGCACGAAGCCTGTGGAACTTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTA
62534182 ACCCAGATATAAT
66 ACCCAGATATAAT
*
62534195 TCCAGCA
1 ACCAGCA
62534202 TATAGCCTGC
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
76 53 0.70
77 5 0.07
78 18 0.24
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (78 bp):
ACCAGCACGAAGCCTGTGGAACTTTAAGCTCGGATATAATACCAGCACGAAGCCTGCGGGATTTA
ACCCAGATATAAT
Found at i:62538377 original size:45 final size:46
Alignment explanation
Indices: 62538269--62538435 Score: 169
Period size: 47 Copynumber: 3.5 Consensus size: 46
62538259 TTTGTGTGCT
*
62538269 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATGAT-AGAGCC
* * * * * *
62538316 AGTGTAAGATCATGTCTAGGATATGCATCGGCTACATGAT-GTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATGATAGAGCC
* *
62538361 AGTGTAAGACCATGTCTGGGACATGGCATC-GACACGGAT-ACGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCAC--ATGA--T-AGAGCC
62538411 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
62538436 GCATTGACAT
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
45 27 0.27
46 6 0.06
47 37 0.37
48 1 0.01
49 1 0.01
50 28 0.28
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATGATAGAGCC
Found at i:62538414 original size:50 final size:48
Alignment explanation
Indices: 62538269--62538444 Score: 161
Period size: 50 Copynumber: 3.7 Consensus size: 48
62538259 TTTGTGTGCT
* *
62538269 AGTGTAAGACCATGTCTGGGACATGCATCGGCCAC--ATTA-TGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GACACGGA-TACTGAGAGTC
* * * * *
62538316 AGTGTAAGATCATGTCTAGGATATGCAT-----CGGCTACATGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACACGGATAC-TGA-GAGTC
62538361 AGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATACGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACACGGATAC-TGAGAGTC
*
62538411 AGTGTAAGACCATGTCTGGGACATGGCATTGACA
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACA
62538445 TTATACCCTA
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
44 3 0.03
45 24 0.23
46 4 0.04
47 25 0.24
50 37 0.35
51 9 0.09
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACACGGATACTGAGAGTC
Found at i:62541945 original size:34 final size:35
Alignment explanation
Indices: 62541907--62541973 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 35
62541897 ATTCTGTAGT
*
62541907 TAGGGTAATACTG-AAACTATAGAA-ACTGAGACAG
1 TAGGG-AAAACTGAAAACTATAGAAGACTGAGACAG
*
62541941 TAGGGAAAACTGAAAACTTTAGAAGACTGAGAC
1 TAGGGAAAACTGAAAACTATAGAAGACTGAGAC
62541974 TATAGCTAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 6 0.21
34 15 0.52
35 8 0.28
ACGTcount: A:0.45, C:0.12, G:0.24, T:0.19
Consensus pattern (35 bp):
TAGGGAAAACTGAAAACTATAGAAGACTGAGACAG
Found at i:62544715 original size:65 final size:65
Alignment explanation
Indices: 62544604--62544734 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
62544594 CCCCTAGGGT
** *
62544604 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTTTTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
62544669 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
62544734 T
1 T
62544735 GTATGGGACT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
Found at i:62550882 original size:26 final size:22
Alignment explanation
Indices: 62550853--62550900 Score: 60
Period size: 26 Copynumber: 2.0 Consensus size: 22
62550843 AGTTGTAAAG
62550853 AGAAAATTCTCTGAAAAGATTATTTT
1 AGAAAATT-TCT--AAAGA-TATTTT
62550879 AGAAAATTTCTAAAGATATTTT
1 AGAAAATTTCTAAAGATATTTT
62550901 TTATTTACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 5 0.23
25 3 0.14
26 8 0.36
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (22 bp):
AGAAAATTTCTAAAGATATTTT
Found at i:62552205 original size:20 final size:21
Alignment explanation
Indices: 62552167--62552205 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
62552157 AAAGTTGAAG
* *
62552167 TAGTATTTTATGTTTTTTTTA
1 TAGTATTTTATGATATTTTTA
62552188 TAGT-TTTTATGATATTTT
1 TAGTATTTTATGATATTTT
62552206 CAAACTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (21 bp):
TAGTATTTTATGATATTTTTA
Found at i:62556715 original size:27 final size:27
Alignment explanation
Indices: 62556685--62556743 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
62556675 AAGAGCCTTC
* * *
62556685 CTTTTATATTTCGCGACAAAGGATTTT
1 CTTTCATATTTCACCACAAAGGATTTT
*
62556712 CTTTCATATTTCACCACAAAGGCTTTT
1 CTTTCATATTTCACCACAAAGGATTTT
62556739 CTTTC
1 CTTTC
62556744 TCGCCGTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (27 bp):
CTTTCATATTTCACCACAAAGGATTTT
Found at i:62561534 original size:16 final size:16
Alignment explanation
Indices: 62561515--62561546 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
62561505 AATTGTTTTA
62561515 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
62561531 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
62561547 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:62561849 original size:50 final size:50
Alignment explanation
Indices: 62561763--62562141 Score: 345
Period size: 50 Copynumber: 7.5 Consensus size: 50
62561753 CGCATAGAAT
* * * *
62561763 CCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAG
1 CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
* * *
62561813 CCTGCACTTTGTACTACACATGTGACTTAACCATCTGATACACGTAGTAG
1 CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
** * * * * * *
62561863 CCTGCACTTAGTACTACACACATTA-TCGAAGTTAA-CGGGTACGCATAGTAG
1 CCTGCACTTAGTACTACACATGTGACT-TAA--CAATCTGGTACACGTAGTAG
* * *
62561914 CCTGCACTTAGTA-TGACACATGCGACCTATCAATCTGGTACACGTAGTAG
1 CCTGCACTTAGTACT-ACACATGTGACTTAACAATCTGGTACACGTAGTAG
* * * * *
62561964 CCTACACTTAGTACTACATACGTGACTTAACCATCTGATACACGTAGTAG
1 CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
* * * * * * * *
62562014 TCTACACTTAGTACTACATATGTGA-TCGAAGTTAA-CGGGTACGCATAGTAG
1 CCTGCACTTAGTACTACACATGTGACT-TAA--CAATCTGGTACACGTAGTAG
* * *
62562065 CCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAG
1 CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
*
62562115 CCTGCACTTAGTACTACACACGTGACT
1 CCTGCACTTAGTACTACACATGTGACT
62562142 CACAATGAAT
Statistics
Matches: 257, Mismatches: 60, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
49 6 0.02
50 182 0.71
51 67 0.26
52 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
CCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAG
Found at i:62562012 original size:151 final size:151
Alignment explanation
Indices: 62561750--62562141 Score: 651
Period size: 151 Copynumber: 2.6 Consensus size: 151
62561740 AAGCTCTCTA
* * *
62561750 GTACGCATAGAATCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
* * *
62561815 TGCACTTTGTACTACACATGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
*
62561880 ACACATTATCGAAGTTAACGG
131 ACACATGATCGAAGTTAACGG
62561901 GTACGCATAGTAGCCTGCACTTAGTA-TGACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GTACGCATAGTAGCCTGCACTTAGTACT-ACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
62561965 CTACACTTAGTACTACATACGTGACTTAACCATCTGATACACGTAGTAGTCTACACTTAGTACTA
65 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
* **
62562030 CATATGTGATCGAAGTTAACGG
130 CACACATGATCGAAGTTAACGG
62562052 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
62562117 TGCACTTAGTACTACACACGTGACT
66 TGCACTTAGTACTACACACGTGACT
62562142 CACAATGAAT
Statistics
Matches: 224, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
150 1 0.00
151 222 0.99
152 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
ACACATGATCGAAGTTAACGG
Found at i:62562055 original size:101 final size:101
Alignment explanation
Indices: 62561950--62562132 Score: 258
Period size: 101 Copynumber: 1.8 Consensus size: 101
62561940 CTATCAATCT
* * * * * *
62561950 GGTACACGTAGTAGCCTACACTTAGTACTACATACGTGACTTAACCATCTGATACACGTAGTAGT
1 GGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
62562015 CTACACTTAGTACTACATATGTGATCGAAGTTAACG
66 CTACACTTAGTACTACATATGTGATCGAAGTTAACG
* * * * *
62562051 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
*
62562116 CTGCACTTAGTACTACA
66 CTACACTTAGTACTACA
62562133 CACGTGACTC
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (101 bp):
GGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
CTACACTTAGTACTACATATGTGATCGAAGTTAACG
Found at i:62562517 original size:19 final size:20
Alignment explanation
Indices: 62562489--62562535 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
62562479 AAGAACATGT
62562489 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
62562510 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
62562529 TATATAT
1 TATATAT
62562536 AGTTATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:62572627 original size:48 final size:51
Alignment explanation
Indices: 62572505--62572775 Score: 197
Period size: 48 Copynumber: 5.6 Consensus size: 51
62572495 CAAAATGGAG
* *
62572505 GCCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTAACATATCCGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
* * * *
62572555 GCTGATGCCATGTCCCAGATATGGTCTCACACTGA-CACT-TC-TATACGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
* * *
62572603 GCCGATGCCATGTCCTAGACATGGTCTTACACTG-GCTCT--CATA-ATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
* * * **
62572650 AGCCAATG-CATGTCCCAGACAT-GTCTTGCACT-AGCTCTTGTC-TCA-A-G-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCAC-TAACAT-ATACGT
* * * *
62572697 GCCGATGCCATGTACTAGACATGGTCTTACACT-AGCTCT--CATA-ATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
62572744 GGCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT
62572776 AGAACACAAA
Statistics
Matches: 185, Mismatches: 21, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
45 3 0.02
46 31 0.17
47 43 0.23
48 70 0.38
49 4 0.02
50 33 0.18
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (51 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACTAACATATACGT
Found at i:62572719 original size:94 final size:94
Alignment explanation
Indices: 62572503--62572777 Score: 315
Period size: 94 Copynumber: 2.9 Consensus size: 94
62572493 ATCAAAATGG
* * **
62572503 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTAACAT-ATCCGT-GCTGATGCCAT
1 AGGCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCT--CATAAT--GTAGCCAATG-CAT
* * * * *
62572566 GTCCCAGATATGGTCTCACACT-GACACTTCTAT-A
61 GTCCCAGACAT-GTCTTACACTAG-CTCTTGTCTCA
* * *
62572600 CGTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTAGCCAATGCATGTCC
1 AG-GCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCTCATAATGTAGCCAATGCATGTCC
*
62572665 CAGACATGTCTTGCACTAGCTCTTGTCTCA
65 CAGACATGTCTTACACTAGCTCTTGTCTCA
* *
62572695 AGGCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCC
1 AGGCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCTCATAATGTAGCCAATGCATGTCCC
62572760 AGACATGTCTTACACTAG
66 AGACATGTCTTACACTAG
62572778 AACACAAATA
Statistics
Matches: 156, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
94 90 0.58
95 18 0.12
96 8 0.05
97 3 0.02
98 37 0.24
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
AGGCCGATGCCATGTACTAGACATGGTCTTACACTAGCTCTCATAATGTAGCCAATGCATGTCCC
AGACATGTCTTACACTAGCTCTTGTCTCA
Found at i:62572749 original size:142 final size:146
Alignment explanation
Indices: 62572458--62572775 Score: 332
Period size: 147 Copynumber: 2.2 Consensus size: 146
62572448 TCTATCAAGT
* * * *
62572458 CGATGCCATGTTCTAGACATGGTATTACATTGACTATCAAAATGGAGGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCAAAATGGAGGCCAATGCCATGTCCCAG
* * * *
62572523 ACATGGTCTTACACTAGCTCTAACATATCCGTGCTGATGCCATGTCCCAGATATGGTCTCACACT
66 ACATGGTCTTACACTAGCTCT-ACATATCAGTGCCGATGCCATGTACCAGACATGGTCTCACACT
62572588 GACACTTCTATACGTGC
130 GACACTTCTATACGTGC
* * * *
62572605 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTA-GCCAATG-CATGTCCCAG
1 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCAAAATGGAGGCCAATGCCATGTCCCAG
* ** * * *
62572668 ACAT-GTCTTGCACTAGCTCT-TGTCTCAAG-GCCGATGCCATGTACTAGACATGGTCTTACACT
66 ACATGGTCTTACACTAGCTCTACATATC-AGTGCCGATGCCATGTACCAGACATGGTCTCACACT
* *
62572730 -A-GC-TCTCATAATGTGGC
130 GACACTTCT-AT-ACGT-GC
*
62572747 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCTAGACATGGTCTTACACT
62572776 AGAACACAAA
Statistics
Matches: 146, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
139 3 0.02
140 13 0.09
141 17 0.12
142 38 0.26
143 1 0.01
144 15 0.10
145 14 0.10
146 6 0.04
147 39 0.27
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (146 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCAAAATGGAGGCCAATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTACATATCAGTGCCGATGCCATGTACCAGACATGGTCTCACACTG
ACACTTCTATACGTGC
Found at i:62575095 original size:43 final size:43
Alignment explanation
Indices: 62575034--62575116 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
62575024 CTTGGTGTTC
*
62575034 GGCCTTCACTTGTTGACAAACTAGACACTTAGAAACAAACATA
1 GGCCTTCACTTGTTGACAAACTAGACACTTAAAAACAAACATA
62575077 GGCCTTCACTTGTTGACAAACTAGACACTTAAAAACAAAC
1 GGCCTTCACTTGTTGACAAACTAGACACTTAAAAACAAAC
62575117 TCGGAAATGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.23
Consensus pattern (43 bp):
GGCCTTCACTTGTTGACAAACTAGACACTTAAAAACAAACATA
Found at i:62578987 original size:20 final size:21
Alignment explanation
Indices: 62578962--62579001 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
62578952 CCCTTGAAAT
62578962 AGGGC-ACACGCCCATGTGGA
1 AGGGCAACACGCCCATGTGGA
* *
62578982 AGGGCAACATGCCCGTGTGG
1 AGGGCAACACGCCCATGTGG
62579002 TTTACTATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:62580358 original size:48 final size:48
Alignment explanation
Indices: 62580112--62580481 Score: 255
Period size: 47 Copynumber: 7.8 Consensus size: 48
62580102 AGGGTATAAT
* *
62580112 GCCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCATCCATCAA-GT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-TAT-AATGTG
* * * * *
62580161 --CGATGCCATGTTCTAGACATGGTCTTACACTGACTATCTA-AATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-TATAAT-GTG
* * * * *
62580208 GCCGACGCCATGTCCCAGACATGGTGTTACACTAGCTCTAACATAT-TCG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATA-ATGT-G
* * * * *
62580257 TGCCGATGTCATGTCCCAGACATGGCCTTACACTGACACCTT-TATACGT-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTTATA-ATGTG
* * *
62580306 GTCGATGCCATGTCCTAGACAGGGTCTTACACTGGCTCTTATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTG
* * * * ** *
62580354 GTCGATG-CATCTCACAGACAT-GTCTTACACTAGCTCTCGT-CTCGAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-G-TG
* * *
62580400 GCCGATGCCATGTCCCAAACATGTTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTG
*
62580448 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
62580482 ACACAAATAA
Statistics
Matches: 249, Mismatches: 53, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
44 2 0.01
45 1 0.00
46 39 0.16
47 73 0.29
48 63 0.25
49 33 0.13
50 35 0.14
51 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTG
Found at i:62583733 original size:16 final size:16
Alignment explanation
Indices: 62583712--62583742 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
62583702 AAACACATAG
62583712 AGTAAGCTACAAAGAA
1 AGTAAGCTACAAAGAA
62583728 AGTAAGCTACAAAGA
1 AGTAAGCTACAAAGA
62583743 GCTTAGTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.13, G:0.19, T:0.13
Consensus pattern (16 bp):
AGTAAGCTACAAAGAA
Found at i:62586886 original size:27 final size:27
Alignment explanation
Indices: 62586856--62587157 Score: 256
Period size: 27 Copynumber: 11.2 Consensus size: 27
62586846 ATTACCGTTT
* *
62586856 TACCCTCGATTAGCAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
62586883 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
62586910 TACCCT-TATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
62586936 TACCC-CTAGTTTGTGAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* **
62586963 TACCC-CTGATTTGTGAAATTACTGAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
62586990 TACCCTCGACTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* ** **
62587017 TACCCTTGGCTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* **
62587044 TACCCTCGATTTGTGAAATTACTGAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* ** * *
62587071 TACCCT-TATAGGATAGAATTACCGAAA
1 TACCCTCGATTTG-TAAAATTACCAAAA
* * * * *
62587098 TACCATTG-TAGTGTGAAATTACTAAAA
1 TACCCTCGAT-TTGTAAAATTACCAAAA
*
62587125 TACCCTCGACTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
62587152 TACCCT
1 TACCCT
62587158 TAGTTTACAA
Statistics
Matches: 220, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
26 29 0.13
27 188 0.85
28 3 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:62587091 original size:81 final size:79
Alignment explanation
Indices: 62586863--62587181 Score: 284
Period size: 81 Copynumber: 3.9 Consensus size: 79
62586853 TTTTACCCTC
*
62586863 GATTAGCAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTATTTGTAAAAT
1 GATT-GCAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTA-TTGTAAAAT
* *
62586928 TACCAAAATACCCCTA
64 TACCAAAATACCCTTG
* ** * ** *
62586944 GTTTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAAT
1 GATTGCAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCT-TA-TTGTAAAAT
62587009 TACCAAAATACCCTTG
64 TACCAAAATACCCTTG
* * * ** * *
62587025 GCTTACAAAATTACCAAAATA-CCCTCGATTTGTGAAATTACTGAAATACCCTTATAGGATAGAA
1 GATTGCAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTAT-TG-TAAAA
* *
62587089 TTACCGAAATACCATTG
63 TTACCAAAATACCCTTG
* * ** * *
62587106 TAGTGTGAAATTACTAAAATA-CCCTCGACTTGTAAAATTACCAAAATACCCTTAGTT-TACAAA
1 GATTGCAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTA-TTGT--AAA
*
62587169 ATTATCAAAATAC
62 ATTACCAAAATAC
62587182 ACCCAATTAG
Statistics
Matches: 196, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.01
80 48 0.24
81 145 0.74
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (79 bp):
GATTGCAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTATTGTAAAATTA
CCAAAATACCCTTG
Found at i:62587225 original size:27 final size:27
Alignment explanation
Indices: 62587195--62587389 Score: 259
Period size: 27 Copynumber: 7.2 Consensus size: 27
62587185 CAATTAGTGA
*
62587195 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
62587222 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
62587249 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
62587276 AATTACTAAAATACCCCCGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
62587303 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
62587330 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
62587357 AATTAC-CAAGATACCCCTGTAGGGTAG
1 AATTACTGAA-ATACCCCTGTAGGGTAG
62587384 AATTAC
1 AATTAC
62587390 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 142 0.98
28 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:62587226 original size:54 final size:53
Alignment explanation
Indices: 62587168--62587388 Score: 209
Period size: 54 Copynumber: 4.1 Consensus size: 53
62587158 TAGTTTACAA
* *
62587168 AATTATCAAAATACACCCAATTAGTG-A-AATTACTGAAATACCCCTGTAAGGTAG
1 AATTATCAAAATAC-CCC-A-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* ** *
62587222 AATTACCGGAATACCCCTATAGGGTAGAATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTATCAAAATACCCC-ATAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* *
62587276 AATTA-CTAAAATACCCCCGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTATC-AAAATA-CCCCATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** * * *
62587330 AATTATTGAAATACCCCTGTAAGGTAGAATTAC-CAAGATACCCCTGTAGGGTAG
1 AATTATCAAAATACCCC-ATAGGGTAGAATTACTGAA-ATACCCCTGTAGGGTAG
62587384 AATTA
1 AATTA
62587389 CCATTTTGCC
Statistics
Matches: 142, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
52 4 0.03
53 13 0.09
54 121 0.85
55 4 0.03
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (53 bp):
AATTATCAAAATACCCCATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:62587253 original size:81 final size:81
Alignment explanation
Indices: 62587060--62587390 Score: 264
Period size: 81 Copynumber: 4.1 Consensus size: 81
62587050 CGATTTGTGA
* * * * * *
62587060 AATTACTGAAATACCCTTATAGGATAGAATTACCGAAATA-CCATTGTAGTGT-GAAATTACTAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCA-TGTAGGGTAG-AATTACTAA
* ** *
62587123 AATACCCTCG-ACTTGTAA
64 AATACCCCCGTA-AGGTAG
* ** * *
62587141 AATTACCAAAATA-CCCT-TAGTTTACAAAATTATCAAAATACACCCAAT-TAGTG-A-AATTAC
1 AATTACCGAAATACCCCTATAGGGT--AGAATTATCAAAAT--ACCC-ATGTAGGGTAGAATTAC
* *
62587201 TGAAATACCCCTGTAAGGTAG
61 TAAAATACCCCCGTAAGGTAG
* * *
62587222 AATTACCGGAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTAAAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCATGTAGGGTAGAATTACTAAAA
*
62587287 TACCCCCGTAGGGTAG
66 TACCCCCGTAAGGTAG
* ** * * * *
62587303 AATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAAGGTAGAATTACCAAGA
1 AATTACCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCATGTAGGGTAGAATTACTAAAA
* *
62587368 TACCCCTGTAGGGTAG
66 TACCCCCGTAAGGTAG
62587384 AATTACC
1 AATTACC
62587391 ATTTTGCCCC
Statistics
Matches: 204, Mismatches: 33, Indels: 26
0.78 0.13 0.10
Matches are distributed among these distances:
78 1 0.00
79 12 0.06
80 4 0.02
81 168 0.82
82 5 0.02
83 10 0.05
84 3 0.01
85 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (81 bp):
AATTACCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCATGTAGGGTAGAATTACTAAAA
TACCCCCGTAAGGTAG
Found at i:62587553 original size:16 final size:16
Alignment explanation
Indices: 62587532--62587562 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62587522 CAAATATGGG
*
62587532 CATGACATTCTGCATA
1 CATGACATGCTGCATA
62587548 CATGACATGCTGCAT
1 CATGACATGCTGCAT
62587563 GGGTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (16 bp):
CATGACATGCTGCATA
Found at i:62587631 original size:25 final size:25
Alignment explanation
Indices: 62587593--62587662 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
62587583 AGGAAGTGCT
* *
62587593 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
62587618 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
62587643 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
62587663 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:62587675 original size:24 final size:24
Alignment explanation
Indices: 62587592--62587687 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
62587582 GAGGAAGTGC
*
62587592 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
62587617 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
62587641 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
62587665 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
62587688 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:62587686 original size:50 final size:50
Alignment explanation
Indices: 62587593--62587687 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
62587583 AGGAAGTGCT
**
62587593 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
62587643 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
62587688 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:62589969 original size:27 final size:26
Alignment explanation
Indices: 62589939--62590255 Score: 166
Period size: 27 Copynumber: 11.8 Consensus size: 26
62589929 CTCGATTAAC
62589939 AAAATTACCAAAATACCCCTATTTTGT
1 AAAATTACCAAAATACCCCTA-TTTGT
*
62589966 AAAACTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTA-TTTGT
* *
62589993 GAAATTACCAAAATGCCCCTGATTTGT
1 AAAATTACCAAAATACCCCT-ATTTGT
* ** * * *
62590020 GAAATTACTGAAATACCATCGACTTGT
1 AAAATTACCAAAATACC-CCTATTTGT
*
62590047 AAAATTACCAAAATACCCCCGATTTGT
1 AAAATTACCAAAATA-CCCCTATTTGT
* * ** * **
62590074 GAAACTACTGAAATACCCTTATAGGGT
1 AAAATTACCAAAATACCCCTAT-TTGT
* ** * * * *
62590101 AGAATTACTGAAATATCCTTGTAGTGT
1 AAAATTACCAAAATACCCCTAT-TTGT
* ** * *
62590128 GAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCC-CTATTTGT
* * **
62590155 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCT-ATTTGT
*
62590182 AAAATTACCAAAATACCCCTGATTAGT
1 AAAATTACCAAAATACCCCT-ATTTGT
* ** * **
62590209 GAAATTACTGAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTAT-TTGT
*
62590236 AGAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
62590256 GTAGGGTAGA
Statistics
Matches: 221, Mismatches: 62, Indels: 14
0.74 0.21 0.05
Matches are distributed among these distances:
26 6 0.03
27 211 0.95
28 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCCTATTTGT
Found at i:62590073 original size:108 final size:108
Alignment explanation
Indices: 62589939--62590232 Score: 310
Period size: 108 Copynumber: 2.7 Consensus size: 108
62589929 CTCGATTAAC
* *
62589939 AAAATTACCAAAATA-CCCCTATTTTGTAAAACTACCAAAATACCCCTAGTTTGTGAAATTACCA
1 AAAATTACCAAAATACCCCCGA-TTTGTAAAACTACCAAAATACCCCTAGTTAGTGAAATTACCA
* *
62590003 AAATGCCCCTG-ATTTGTGAAATTACTGAAATACCATCGACTTGT
65 AAATACCCCTGTA-GTGTGAAATTACTGAAATACCATCGACTTGT
* ** * * *
62590047 AAAATTACCAAAATACCCCCGATTTGTGAAACTACTGAAATACCCTTA--TAGGGTAGAATTACT
1 AAAATTACCAAAATACCCCCGATTTGTAAAACTACCAAAATACCCCTAGTTAGTG-A-AATTACC
* * * *
62590110 GAAATATCCTTGTAGTGTGAAATTACTGAAATACCCTCGACTTGT
64 AAAATACCCCTGTAGTGTGAAATTACTGAAATACCATCGACTTGT
** * ** * **
62590155 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCT-GATTAGTGAAATTACTG
1 AAAATTACCAAAATACCCCCGATTTGTAAAACTACCAAAATACCCCTAG-TTAGTGAAATTACCA
62590219 AAATACCCCTGTAG
65 AAATACCCCTGTAG
62590233 GGTAGAATTA
Statistics
Matches: 152, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
106 3 0.02
107 1 0.01
108 137 0.90
109 7 0.05
110 4 0.03
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (108 bp):
AAAATTACCAAAATACCCCCGATTTGTAAAACTACCAAAATACCCCTAGTTAGTGAAATTACCAA
AATACCCCTGTAGTGTGAAATTACTGAAATACCATCGACTTGT
Found at i:62590189 original size:54 final size:54
Alignment explanation
Indices: 62589939--62590172 Score: 217
Period size: 54 Copynumber: 4.3 Consensus size: 54
62589929 CTCGATTAAC
* * ** * *
62589939 AAAATTACCAAAATACCCCT-ATTTTGTAAAACTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGTGAAATTACTGAAATACCCTCGA-CTTGT
* * *
62589993 GAAATTACCAAAATGCCCCTGATTTGTGAAATTACTGAAATACCATCGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGT
* * * *
62590047 AAAATTACCAAAATACCCCCGATTTGTGAAACTACTGAAATACCCT-TA-TAGGGT
1 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACT--TGT
* ** * * *
62590101 AGAATTACTGAAATATCCTTG-TAGTGTGAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCCTGAT-TTGTGAAATTACTGAAATACCCTCGACTTGT
62590155 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
62590173 TTGGTTTACA
Statistics
Matches: 143, Mismatches: 30, Indels: 14
0.76 0.16 0.07
Matches are distributed among these distances:
52 1 0.01
53 2 0.01
54 135 0.94
55 4 0.03
56 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGT
Found at i:62590242 original size:81 final size:78
Alignment explanation
Indices: 62590084--62590407 Score: 242
Period size: 81 Copynumber: 4.0 Consensus size: 78
62590074 GAAACTACTG
* * ** * *
62590084 AAATACCCTTATAGGGTAGAATTACTGAAATATCCTTGTAGTGTGAAATTACTGAAATA-CCCTC
1 AAATACCC-TGTAGGGTAAAATTACCAAAATACCCCTGTA--GTGAAATTACTGAAATACCCCT-
** *
62590148 G-ACTTGTAAAATTACCA
62 GTA-GGGTAGAATTACCA
*
62590165 AAATACCCT-T-GGTTTACAAAATTACCAAAATACCCCTGATTAGTGAAATTACTGAAATACCCC
1 AAATACCCTGTAGG-GT--AAAATTACCAAAATACCCCTG--TAGTGAAATTACTGAAATACCCC
62590228 TGTAGGGTAGAATTACCA
61 TGTAGGGTAGAATTACCA
* * * * *
62590246 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATA-CCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGTG-A-AATTACTGAAATACCCCTG
*
62590311 TAGGGTAGAATTACCG
63 TAGGGTAGAATTACCA
* * ** * * * *
62590327 AAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTG
1 AAATA-CCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGTG-A-AATTACTGAAATACCCCTG
* *
62590392 TGGGGTAAAATTACCA
63 TAGGGTAGAATTACCA
62590408 TTTTTCCCCT
Statistics
Matches: 207, Mismatches: 24, Indels: 24
0.81 0.09 0.09
Matches are distributed among these distances:
78 2 0.01
79 6 0.03
80 2 0.01
81 182 0.88
82 9 0.04
83 4 0.02
84 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (78 bp):
AAATACCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGTGAAATTACTGAAATACCCCTGTAG
GGTAGAATTACCA
Found at i:62590256 original size:27 final size:27
Alignment explanation
Indices: 62590184--62590406 Score: 315
Period size: 27 Copynumber: 8.3 Consensus size: 27
62590174 TGGTTTACAA
* *
62590184 AATTACCAAAATACCCCTGATTAGTG-A-
1 AATTACCGAAATACCCCTG--TAGGGTAG
*
62590211 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
62590238 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
62590265 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
62590292 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
62590319 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
62590346 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
62590373 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
62590400 AATTACC
1 AATTACC
62590407 ATTTTTCCCC
Statistics
Matches: 178, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
25 4 0.02
26 1 0.01
27 173 0.97
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:62590642 original size:25 final size:25
Alignment explanation
Indices: 62590609--62590678 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
62590599 AGGAAGTGCT
*
62590609 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
62590634 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
62590659 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
62590679 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:62590691 original size:24 final size:25
Alignment explanation
Indices: 62590609--62590703 Score: 113
Period size: 25 Copynumber: 3.8 Consensus size: 25
62590599 AGGAAGTGCT
*
62590609 AAAAGGGCTATGCCCCAGTTTACCA
1 AAAAGGGCTATGCCCCAGTTTATCA
*
62590634 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCA
* *
62590659 AAAAGGGCTTTGCCCCAG-TTAT-T
1 AAAAGGGCTATGCCCCAGTTTATCA
*
62590682 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
62590704 ATATGATAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 45 0.73
26 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATCA
Found at i:62595480 original size:13 final size:13
Alignment explanation
Indices: 62595460--62595505 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
62595450 CTAGGGACGG
62595460 GCGTGTGCCCTGA
1 GCGTGTGCCCTGA
* *
62595473 GTGTGTGCCCTGG
1 GCGTGTGCCCTGA
* *
62595486 GCGTGTGCCTTGG
1 GCGTGTGCCCTGA
62595499 GCGTGTG
1 GCGTGTG
62595506 AAGTCTGCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.02, C:0.24, G:0.46, T:0.28
Consensus pattern (13 bp):
GCGTGTGCCCTGA
Found at i:62618664 original size:15 final size:16
Alignment explanation
Indices: 62618644--62618682 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
62618634 AATTAGAAAG
62618644 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
*
62618659 ATGAAAAATTAATTAA
1 ATGAAAAGTTAATTAA
62618675 ATGAAAAG
1 ATGAAAAG
62618683 GAAAACAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.13, T:0.28
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:62621038 original size:42 final size:42
Alignment explanation
Indices: 62620960--62621122 Score: 147
Period size: 42 Copynumber: 3.8 Consensus size: 42
62620950 CAATTCCAAC
* * * *
62620960 GTCCCAGAC-GTGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACAGGGTCTTACACGAAATCATATATCGATGCCA-T
62621002 GTCCCAGACAGGGTCTTACACGAAATCATATA-CGATGCCGAT
1 GTCCCAGACAGGGTCTTACACGAAATCATATATCGATGCC-AT
* * *
62621044 GTCCCAGACATGATCTTACACGTAAATC-TCAAATCGATGCCAAT
1 GTCCCAGACAGGGTCTTACACG-AAATCAT-ATATCGATGCC-AT
* *
62621088 GTCCCAGA-TGTGGTCTTACACAAAATC-TCATATCG
1 GTCCCAGACAG-GGTCTTACACGAAATCAT-ATATCG
62621123 GAATCCTATG
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
42 38 0.37
43 38 0.37
44 26 0.25
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACACGAAATCATATATCGATGCCAT
Found at i:62622393 original size:15 final size:15
Alignment explanation
Indices: 62622373--62622403 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
62622363 TTTTACAACA
62622373 CTTAGGAAAAATTTT
1 CTTAGGAAAAATTTT
62622388 CTTAGGAAAAATTTT
1 CTTAGGAAAAATTTT
62622403 C
1 C
62622404 CCAAGTTGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (15 bp):
CTTAGGAAAAATTTT
Found at i:62629417 original size:24 final size:23
Alignment explanation
Indices: 62629372--62629484 Score: 83
Period size: 23 Copynumber: 4.8 Consensus size: 23
62629362 AAGCTCCTCC
*
62629372 TGAGCTGATGAATAGTAAGCTCTAT
1 TGAGCTGA-AAAT-GTAAGCTCTAT
62629397 TGAGCTGAAAATGGTAAGCTCTAT
1 TGAGCTGAAAAT-GTAAGCTCTAT
*
62629421 TGAGCT-AAACA-GTAAGCTCTTT
1 TGAGCTGAAA-ATGTAAGCTCTAT
* * *
62629443 TAAGCTGAATCA-GTAAGCT-TCAA
1 TGAGCTGAA-AATGTAAGCTCT-AT
62629466 TGAGCTG-AAATAGTAAGCT
1 TGAGCTGAAAAT-GTAAGCT
62629485 TTTACAAGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
21 1 0.01
22 17 0.23
23 26 0.36
24 21 0.29
25 8 0.11
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (23 bp):
TGAGCTGAAAATGTAAGCTCTAT
Found at i:62629481 original size:46 final size:46
Alignment explanation
Indices: 62629372--62629484 Score: 115
Period size: 46 Copynumber: 2.4 Consensus size: 46
62629362 AAGCTCCTCC
* * *
62629372 TGAGCTGATGAATAGTAAGCTCTATTGAGCTGAAAATGGTAAGCTCTAT
1 TGAGCTGA--AATAGTAAGCTCTATTAAGCTG-AAATAGTAAGCTCTAA
* *
62629421 TGAGCT-AAACAGTAAGCTCTTTTAAGCTG-AATCAGTAAGCT-TCAA
1 TGAGCTGAAATAGTAAGCTCTATTAAGCTGAAAT-AGTAAGCTCT-AA
62629466 TGAGCTGAAATAGTAAGCT
1 TGAGCTGAAATAGTAAGCT
62629485 TTTACAAGCT
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
44 4 0.07
45 14 0.25
46 30 0.55
48 1 0.02
49 6 0.11
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (46 bp):
TGAGCTGAAATAGTAAGCTCTATTAAGCTGAAATAGTAAGCTCTAA
Found at i:62645011 original size:29 final size:29
Alignment explanation
Indices: 62644948--62645015 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
62644938 TAATCAACCG
62644948 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
62644977 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
62645006 CGCACACTTA
1 CGCACACTTA
62645016 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:62645131 original size:172 final size:168
Alignment explanation
Indices: 62644842--62645161 Score: 552
Period size: 172 Copynumber: 1.9 Consensus size: 168
62644832 GAACTCAAGT
* *
62644842 ACTTACTTTTCCGCTGTCCAAATTGACTCGGTAAAGTCGCACCTTCATGTAAATAATTTATAGAA
1 ACTTACTTTTCCGCTGTCCAAATCGACTCGGTAAAGTCGCACCTTAATGTAAATAATTTATAGAA
*
62644907 AATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCACTTT
66 AATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGCACTTT
62644972 AAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 AAACTC-CACACTTAGTGCCATGCATTTCAAGTTCGCAC
62645011 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGT-AAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTA-CTTTTCCGCTGTCC-AAATCGACTCGGTAAAGTCGCA-CCTTAATGTAAATAATTTATA
*
62645075 GAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGTA
63 GAAA-ATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGCA
62645140 CTTTAAACTCCACACTTAGTGC
127 CTTTAAACTCCACACTTAGTGC
62645162 TGTACAATTA
Statistics
Matches: 143, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
169 5 0.03
170 22 0.15
171 48 0.34
172 68 0.48
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (168 bp):
ACTTACTTTTCCGCTGTCCAAATCGACTCGGTAAAGTCGCACCTTAATGTAAATAATTTATAGAA
AATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGCACTTT
AAACTCCACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:62645153 original size:28 final size:30
Alignment explanation
Indices: 62645115--62645191 Score: 99
Period size: 28 Copynumber: 2.7 Consensus size: 30
62645105 CTTAATAATC
*
62645115 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACAATTA
*
62645145 AACTC-CACACTTAGTG-C-TGTACAATTA
1 AACCCGCACACTTAGTGCCATGTACAATTA
62645172 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
62645192 ATCTCATGAC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
26 5 0.12
27 8 0.20
28 22 0.55
29 2 0.05
30 3 0.08
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACAATTA
Found at i:62653134 original size:29 final size:29
Alignment explanation
Indices: 62653071--62653138 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
62653061 TAATCAACCG
62653071 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
62653100 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
62653129 CGCACACTTA
1 CGCACACTTA
62653139 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:62653251 original size:174 final size:174
Alignment explanation
Indices: 62652960--62653287 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
62652950 AACTCAAGGT
* *
62652960 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
62653025 GAAAATATATATTGGGTTCGCACACATAGTGCTTGATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
62653090 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
* *
62653134 ACTTACCTTTTCCGCTGTCCAAAATCGACTTGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
62653199 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
62653264 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
62653288 TGTACAATTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:62653279 original size:29 final size:30
Alignment explanation
Indices: 62653240--62653318 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
62653230 CTTAATAATC
62653240 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
62653270 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
62653299 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
62653319 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:62657599 original size:21 final size:22
Alignment explanation
Indices: 62657559--62657599 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
62657549 TTCTAAATAA
* *
62657559 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
62657581 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
62657600 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:62658839 original size:15 final size:16
Alignment explanation
Indices: 62658812--62658841 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
62658802 AGATATTCCA
62658812 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
62658828 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
62658842 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:62663194 original size:18 final size:20
Alignment explanation
Indices: 62663157--62663194 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
62663147 ATAAGCAAAG
*
62663157 TTTAGTGTGAAAATTGAAAT
1 TTTAGTGTGAAAACTGAAAT
62663177 TTTA-TGTG-AAACTGAAAT
1 TTTAGTGTGAAAACTGAAAT
62663195 GTGTAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.39, C:0.03, G:0.18, T:0.39
Consensus pattern (20 bp):
TTTAGTGTGAAAACTGAAAT
Found at i:62669342 original size:39 final size:40
Alignment explanation
Indices: 62669242--62669426 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
62669232 TCGAATGATG
* * *
62669242 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
62669281 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
62669322 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
62669361 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
62669400 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
62669427 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:62669448 original size:79 final size:79
Alignment explanation
Indices: 62669295--62669459 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
62669285 GGACTAAGAT
* * **
62669295 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
62669360 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
62669374 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
62669437 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
62669453 CCGAAGG
1 CCGAAGG
62669460 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:62672148 original size:46 final size:49
Alignment explanation
Indices: 62671906--62672268 Score: 293
Period size: 46 Copynumber: 7.7 Consensus size: 49
62671896 AGGGTATAAT
* * *
62671906 GTCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCATCCATC-A-A-
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TACATCTAGAG
** * *
62671953 GTCGATGCCATGTCCCAGACATGGTCTTACACTAACTATTGAAAT-T-GAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CT-ACATCTAGAG
* * * * * * *
62672002 GCCGACGGCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCT-AGAG
* * *
62672053 CT-GATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTA-
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTAG-AG
62672098 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTAGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTAGAG
* * *
62672144 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCA-AT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCT-AGAG
* *
62672190 G-CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATA-TG
1 GTC-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTAGAG
62672238 GTCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT
62672269 AGCACACAAA
Statistics
Matches: 262, Mismatches: 33, Indels: 43
0.78 0.10 0.13
Matches are distributed among these distances:
44 10 0.04
45 20 0.08
46 70 0.27
47 64 0.24
48 31 0.12
49 37 0.14
50 28 0.11
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTAGAG
Found at i:62672217 original size:94 final size:94
Alignment explanation
Indices: 62671902--62672271 Score: 329
Period size: 94 Copynumber: 3.9 Consensus size: 94
62671892 ACATAGGGTA
* * * *
62671902 TAATGTCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCATCCAT-CAA-GTCGATGCCATG
1 TAATG-CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TACATATAAGGTCGATGCCATG
* * *
62671965 TCCCAGACATGGTCTTACACTAACTATTGAAAT-
64 TCCCAGACATGGTCTTACACTAGCTCTCG---TC
* * * * * **
62671998 TGAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAT-CCGTGCTGATGCCA
1 TAATG-CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATATAAGGT-C-GATGCCA
*
62672062 TGTCCCAGACATGGTCTTACACT-GACACATC-TC
62 TGTCCCAGACATGGTCTTACACTAG-CTC-TCGTC
* *
62672095 GTAGT-CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTAGAGGTCGATG-CATG
1 -TAATGCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATA-AGGTCGATGCCATG
62672155 TCCCAGACAT-GTCTTACACTAGCTCTCGTC
64 TCCCAGACATGGTCTTACACTAGCTCTCGTC
*
62672185 TCAATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATATGGTCGATG-CAT
1 T-AATGC-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATAAGGTCGATGCCAT
62672248 GTCCCAGACAT-GTCTTACACTAGC
63 GTCCCAGACATGGTCTTACACTAGC
62672272 ACACAAATAA
Statistics
Matches: 227, Mismatches: 27, Indels: 42
0.77 0.09 0.14
Matches are distributed among these distances:
89 3 0.01
90 16 0.07
91 16 0.07
92 13 0.06
93 16 0.07
94 67 0.30
95 18 0.08
96 42 0.19
97 2 0.01
98 2 0.01
99 31 0.14
100 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (94 bp):
TAATGCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATAAGGTCGATGCCATGTC
CCAGACATGGTCTTACACTAGCTCTCGTC
Found at i:62672255 original size:140 final size:142
Alignment explanation
Indices: 62671909--62672269 Score: 450
Period size: 140 Copynumber: 2.5 Consensus size: 142
62671899 GTATAATGTC
* *
62671909 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCATCCATCA-AGTCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCATAGTCGATG-CATGTCCCAGAC
62671973 ATGGTCTTACACTAACTATTGAAATTGAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGC
64 AT-GTCTTACACTAAC-ATTGAAATTGAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGC
**
62672038 TCTCACATATCCGTGCT
127 TCT-ACATATCAATGCT
* * *
62672055 GATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TCGTAGTCGATGCATGTCCCAGACAT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATAGTCGATGCATGTCCCAGACAT
** * * *
62672119 GTCTTACACTGGC-TT-ACATCTAGAGGTCGA-TGCATGTCCCAGACAT-GTCTTACACTAGCTC
66 GTCTTACACTAACATTGAAAT-T-GAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGCTC
* *
62672180 T-CGTCTCAATGCT
129 TACATATCAATGCT
*
62672193 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATATGGTCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATA--GTCGATGCATGTCCCAGAC
62672257 ATGTCTTACACTA
64 ATGTCTTACACTA
62672270 GCACACAAAT
Statistics
Matches: 190, Mismatches: 19, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
137 2 0.01
138 44 0.23
140 50 0.26
141 18 0.09
142 7 0.04
143 11 0.06
144 16 0.08
145 9 0.05
146 33 0.17
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (142 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCATAGTCGATGCATGTCCCAGACAT
GTCTTACACTAACATTGAAATTGAGGCCGACGGCATGTCCCAGACATGGTCTTACACTAGCTCTA
CATATCAATGCT
Found at i:62678556 original size:27 final size:27
Alignment explanation
Indices: 62678513--62678569 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
62678503 TACGCACGAG
*
62678513 GGGCAAAATAGTCATTTAACACCC-TAA
1 GGGCAAAATAGTAATTTAAC-CCCATAA
* *
62678540 GGGCAAAATGGTAATTTTACCCCATAA
1 GGGCAAAATAGTAATTTAACCCCATAA
62678567 GGG
1 GGG
62678570 TATCTCGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
GGGCAAAATAGTAATTTAACCCCATAA
Found at i:62678622 original size:27 final size:27
Alignment explanation
Indices: 62678548--62678640 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
62678538 AAGGGCAAAA
* * * * *
62678548 TGGTAATTTTACCCCATAAGGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
62678575 CGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
62678602 TGGTAATTCTACCTTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
62678629 TGCTAATTCTAC
1 TGGTAATTCTAC
62678641 AAGTTATCCA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:62688207 original size:18 final size:19
Alignment explanation
Indices: 62688184--62688219 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
62688174 TAAACTTGGC
*
62688184 AACATAA-TCATTTAATTT
1 AACATAATTCAATTAATTT
62688202 AACATAATTCAATTAATT
1 AACATAATTCAATTAATT
62688220 CACTAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (19 bp):
AACATAATTCAATTAATTT
Found at i:62688551 original size:30 final size:30
Alignment explanation
Indices: 62688517--62688575 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
62688507 TCCTTAACTC
62688517 AAACTTTTGAAAAATTACAATTTTGCCCCA
1 AAACTTTTGAAAAATTACAATTTTGCCCCA
* * * *
62688547 AAACTTTTGCATATTTACACTTTTGCCCC
1 AAACTTTTGAAAAATTACAATTTTGCCCC
62688576 TAGGCTCGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCA
Found at i:62698184 original size:27 final size:26
Alignment explanation
Indices: 62698140--62698191 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62698130 CTCACTGCAA
*
62698140 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
62698167 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
62698192 GCAGCCTCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:62698268 original size:27 final size:27
Alignment explanation
Indices: 62698230--62698316 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 27
62698220 CCACATATAT
*
62698230 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * * *
62698256 ATATTTGTATCTGGTGACTTTGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
62698283 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
62698310 ATATCTG
1 ATATCTG
62698317 GCAGCCTCGT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 7 0.13
27 46 0.87
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:62699794 original size:79 final size:78
Alignment explanation
Indices: 62699692--62699914 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
62699682 GCTTCTCGTT
* *
62699692 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
62699757 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
62699772 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
62699835 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
62699850 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
62699913 GA
63 GA
62699915 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 46 0.37
79 56 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:62699809 original size:39 final size:40
Alignment explanation
Indices: 62699692--62699914 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
62699682 GCTTCTCGTT
* *
62699692 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
62699732 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
62699772 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
62699811 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
62699850 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
62699891 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62699915 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:62702260 original size:27 final size:27
Alignment explanation
Indices: 62702230--62702506 Score: 401
Period size: 27 Copynumber: 10.3 Consensus size: 27
62702220 GTTACAGTAT
*
62702230 TTTTACCCTACCGGGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* *
62702257 TTTTACCCTACAGGCGCATTGCGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
62702284 TTTTACCCTACAGGGGTATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
62702311 TTTTACCCTACAGAGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
62702338 TTTTACCCTACAGGGGTATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
62702365 TTTTACCCTACAGGGGCATTACAGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
*
62702392 TCTTACCCTACAGGGGCATTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* * *
62702419 TTTTACCCTACAAGGGCATTACTGTTA
1 TTTTACCCTACAGGGGCATTACGGTCA
* *
62702446 ATTTACCCTACAGGGGCATTACAGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
* * **
62702473 TTTTACCCTACAAGAGTGTTACGGTCA
1 TTTTACCCTACAGGGGCATTACGGTCA
62702500 TTTTACC
1 TTTTACC
62702507 TATTTTGGGG
Statistics
Matches: 222, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 222 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (27 bp):
TTTTACCCTACAGGGGCATTACGGTCA
Found at i:62715205 original size:48 final size:48
Alignment explanation
Indices: 62715134--62715520 Score: 603
Period size: 48 Copynumber: 8.0 Consensus size: 48
62715124 CAAGATAAAT
* * *
62715134 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
62715182 ATATGTACATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
62715230 ATATGTATATGTGGTAAAGTCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
62715278 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATTTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
62715326 ATATATATATGTGGTAAAGCTGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
62715374 ATATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
62715422 ATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTGATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT-ATGAG
* *
62715471 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
62715519 AT
1 AT
62715521 GTGTGTATAT
Statistics
Matches: 312, Mismatches: 26, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
48 267 0.86
49 45 0.14
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:62719365 original size:33 final size:34
Alignment explanation
Indices: 62719322--62719387 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
62719312 ATAGTGCATG
* *
62719322 TAGTAACAGTCTGAGCCTGAGCCTTATTCAGTAT
1 TAGTAACAGTCTGAGCCTGAGCCCTATACAGTAT
* *
62719356 TAGT-ACAGTCTGGGCCTTAGCCCTATACAGTA
1 TAGTAACAGTCTGAGCCTGAGCCCTATACAGTA
62719388 ACAGTGTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 24 0.86
34 4 0.14
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (34 bp):
TAGTAACAGTCTGAGCCTGAGCCCTATACAGTAT
Found at i:62719420 original size:28 final size:28
Alignment explanation
Indices: 62719360--62719420 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
62719350 CAGTATTAGT
* * *
62719360 ACAGTCTGGGCCTTAGCCCTATACAGTA
1 ACAGTCTGGGCCTAAGCCCAATACAATA
*
62719388 ACAGTGTGGGCCTAAGCCCAATACAATA
1 ACAGTCTGGGCCTAAGCCCAATACAATA
*
62719416 TCAGT
1 ACAGT
62719421 ATAGTGTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAATACAATA
Found at i:62719652 original size:27 final size:27
Alignment explanation
Indices: 62719578--62719653 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
62719568 CTTCCAAAAT
* *
62719578 AGTAAGTGTGACA-AAGCCACCAGTATC
1 AGTAATTGTGACACAA-CCACCAGTAAC
*
62719605 AGTAATTGTGGCACAACCACCAGTAAC
1 AGTAATTGTGACACAACCACCAGTAAC
* *
62719632 AGTGAA-TGTGACATAATCACCA
1 AGT-AATTGTGACACAACCACCA
62719654 CTACAATACT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 37 0.90
28 4 0.10
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
AGTAATTGTGACACAACCACCAGTAAC
Found at i:62719848 original size:27 final size:27
Alignment explanation
Indices: 62719818--62719914 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
62719808 ATACGGGGGT
* * *
62719818 ATTATGGTGATTTTACCCTAGAGGGAC
1 ATTACGGTCATTTTACCCTACAGGGAC
*
62719845 ATTACGGTCATTTTA-CCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGAC
* * *
62719871 ACTACGGTCATTTTACCCTACAAGGAT
1 ATTACGGTCATTTTACCCTACAGGGAC
* *
62719898 GTTACGATCATTTTACC
1 ATTACGGTCATTTTACC
62719915 TATTTTGGGG
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 23 0.40
27 35 0.60
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTACAGGGAC
Found at i:62719876 original size:26 final size:27
Alignment explanation
Indices: 62719827--62719892 Score: 98
Period size: 26 Copynumber: 2.5 Consensus size: 27
62719817 TATTATGGTG
* *
62719827 ATTTTACCCTAGAGGGACATTACGGTC
1 ATTTTACCCTACAGGGACACTACGGTC
*
62719854 ATTTTA-CCTACAGGGGCACTACGGTC
1 ATTTTACCCTACAGGGACACTACGGTC
62719880 ATTTTACCCTACA
1 ATTTTACCCTACA
62719893 AGGATGTTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
26 23 0.66
27 12 0.34
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (27 bp):
ATTTTACCCTACAGGGACACTACGGTC
Found at i:62720991 original size:32 final size:32
Alignment explanation
Indices: 62720950--62721014 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
62720940 AATCAAAAAG
62720950 AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
1 AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
62720982 AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
1 AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
62721014 A
1 A
62721015 GCCTAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.06, G:0.40, T:0.09
Consensus pattern (32 bp):
AAAGAATAAAATCGTGGGGAGGGAGAGAGAGC
Found at i:62722960 original size:44 final size:42
Alignment explanation
Indices: 62722896--62723062 Score: 131
Period size: 42 Copynumber: 3.9 Consensus size: 42
62722886 TAGTATTCTG
62722896 ATATGTGATTCGTGTAAGACCACATCTGGGACGTTGGCATCA
1 ATATGTGATTCGTGTAAGACCACATCTGGGACGTTGGCATCA
* ** * *
62722938 ATTTGTGATTTACGTGTAAGACCATGTCTGGGACATCGGCATC-
1 ATATGTGA-TT-CGTGTAAGACCACATCTGGGACGTTGGCATCA
* * * ** *
62722981 GTATATGAGTTTGTGTAAGACCTTATCTGGGACAG-TGGCATTA
1 ATATGTGA-TTCGTGTAAGACCACATCTGGGAC-GTTGGCATCA
* ** * *
62723024 ATATGTGATTACATGTAAGACTGCGTCTTGGACGTTGGC
1 ATATGTGATT-CGTGTAAGACCACATCTGGGACGTTGGC
62723063 GTTTTACGAG
Statistics
Matches: 95, Mismatches: 24, Indels: 11
0.73 0.18 0.08
Matches are distributed among these distances:
42 34 0.36
43 34 0.36
44 27 0.28
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (42 bp):
ATATGTGATTCGTGTAAGACCACATCTGGGACGTTGGCATCA
Found at i:62724905 original size:6 final size:6
Alignment explanation
Indices: 62724894--62724925 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
62724884 AATCTGTATT
62724894 TTTTTA TTTTTA TTTTTA -TTTTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
62724926 CACAAATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:62726755 original size:79 final size:81
Alignment explanation
Indices: 62726653--62726837 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
62726643 GCTCCTCGTT
* *
62726653 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-ACTC
* *
62726715 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
* *
62726733 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
* *
62726797 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
62726813 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62726838 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
ATATAGTAACTTAGCA
Found at i:62726837 original size:40 final size:40
Alignment explanation
Indices: 62726653--62726837 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
62726643 GCTCCTCGTT
* *
62726653 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
62726693 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
62726733 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
62726772 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
62726813 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62726838 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:62734763 original size:79 final size:81
Alignment explanation
Indices: 62734661--62734845 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
62734651 GCTCCTCATT
* *
62734661 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-ACTC
* *
62734723 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
* *
62734741 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
* *
62734805 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
62734821 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62734846 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
ATATAGTAACTTAGCA
Found at i:62734845 original size:40 final size:40
Alignment explanation
Indices: 62734661--62734845 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
62734651 GCTCCTCATT
* *
62734661 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
62734701 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
62734741 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
62734780 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
62734821 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62734846 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:62747655 original size:43 final size:42
Alignment explanation
Indices: 62747607--62747770 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 42
62747597 GAAGCATATA
* * *
62747607 CAATGCCAACGTCCCAGACGTTGTCTTACATGCAATCAAACAT
1 CAATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAA-AT
* *
62747650 CAATGCC-ACTGTCCCAGACAAGGTCTTACATGAAATC-AGAT
1 CAATGCCAAC-GTCCCAGACATGGTCTTACATGAAATCAAAAT
* * * * *
62747691 ACGATGCTGAA-GTCCCAGACATGGTCTTACACGTAAAACAGAAGT
1 -CAATGC-CAACGTCCCAGACATGGTCTTACATG-AAATCA-AAAT
* *
62747736 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAA
1 CAATGCCAACGTCCCAGACATGGTCTTACATGAAA
62747771 ACACATATCG
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 28 0.29
43 39 0.40
44 27 0.28
45 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACATGGTCTTACATGAAATCAAAAT
Found at i:62758081 original size:43 final size:42
Alignment explanation
Indices: 62758033--62758196 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 42
62758023 GAAGCATATA
*
62758033 CAATGCCAACGTCCCAGACGTGGTCTTACATGCAATCAAACAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAA-AT
** * *
62758076 CAATGCCATTGTCCTAGACAG-GGTCTTACATGAAATC-AGAT
1 CAATGCCAACGTCCCAGAC-GTGGTCTTACATGAAATCAAAAT
* * * *
62758117 ACGATGCCGAA-GTCCCAGACATGGTCTTACATGTAAAACAGAAGT
1 -CAATGCC-AACGTCCCAGACGTGGTCTTACATG-AAATCA-AAAT
* * *
62758162 CGATGCCAACATCCCAGACGTGGTCTTACACGAAA
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAA
62758197 ACACATATCG
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 26 0.27
43 41 0.42
44 27 0.28
45 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAAAT
Found at i:62758179 original size:44 final size:42
Alignment explanation
Indices: 62758091--62758199 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 42
62758081 CCATTGTCCT
* * *
62758091 AGACAGGGTCTTACATGAAATCAGATACGATGCCGAAGTCCC
1 AGACATGGTCTTACATGAAAACAGATACGATGCCGAAATCCC
62758133 AGACATGGTCTTACATGTAAAACAGA-AGTCGATGCC-AACATCCC
1 AGACATGGTCTTACATG-AAAACAGATA--CGATGCCGAA-ATCCC
* *
62758177 AGACGTGGTCTTACACGAAAACA
1 AGACATGGTCTTACATGAAAACA
62758200 CATATCGGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
42 17 0.29
43 15 0.26
44 26 0.45
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (42 bp):
AGACATGGTCTTACATGAAAACAGATACGATGCCGAAATCCC
Found at i:62769761 original size:48 final size:48
Alignment explanation
Indices: 62769635--62769922 Score: 454
Period size: 48 Copynumber: 6.0 Consensus size: 48
62769625 CAAGATAAAT
* * *
62769635 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAAATATGTTTGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
62769683 --ATACATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
62769729 ATATGTATATGTGGTAGAGCCGAATGGTTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
62769777 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
62769825 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
62769873 ATATATATATGTGGTAAAGTCGAATGGCTAATGAGCAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
62769921 AT
1 AT
62769923 GTGTGTATAT
Statistics
Matches: 223, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 42 0.19
48 181 0.81
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:62774051 original size:23 final size:23
Alignment explanation
Indices: 62774021--62774067 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
62774011 CAATATAAGA
*
62774021 TAGTTCATGATAGACTTTCCCTT
1 TAGTTCATGATAAACTTTCCCTT
62774044 TAGTTCATGATAAACTTTCCCTT
1 TAGTTCATGATAAACTTTCCCTT
62774067 T
1 T
62774068 TTGGCGACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (23 bp):
TAGTTCATGATAAACTTTCCCTT
Found at i:62775282 original size:31 final size:31
Alignment explanation
Indices: 62775222--62775292 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
62775212 AAAAACCCAA
* **
62775222 AAAAGAATGATATATATCTTAGGTGAACTCT
1 AAAAGAATGATATATATATTAGGCAAACTCT
62775253 AAAAGAATGATATATATA-TATGGCAAACTCT
1 AAAAGAATGATATATATATTA-GGCAAACTCT
* *
62775284 GAAGGAATG
1 AAAAGAATG
62775293 GAACATATGG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 2 0.06
31 32 0.94
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.28
Consensus pattern (31 bp):
AAAAGAATGATATATATATTAGGCAAACTCT
Found at i:62775313 original size:27 final size:27
Alignment explanation
Indices: 62775270--62775347 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
62775260 TGATATATAT
*
62775270 ATATGGCAAACTCTGAAGGAATGGAAC
1 ATATGGCAAAATCTGAAGGAATGGAAC
* *
62775297 ATATGGCAAAATTTGAAGGAATGGAAT
1 ATATGGCAAAATCTGAAGGAATGGAAC
*
62775324 ATATGG-AAAACTCTAAAGGAATGG
1 ATATGGCAAAA-TCTGAAGGAATGG
62775348 TTCTATTGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 4 0.09
27 41 0.91
ACGTcount: A:0.44, C:0.09, G:0.26, T:0.22
Consensus pattern (27 bp):
ATATGGCAAAATCTGAAGGAATGGAAC
Found at i:62796143 original size:27 final size:27
Alignment explanation
Indices: 62796113--62796216 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
62796103 CCCCTTATTC
62796113 AGGTAAAATGACTGTTTTGCCCTCATG
1 AGGTAAAATGACTGTTTTGCCCTCATG
* *
62796140 AGGTAAAATAACTGTTTTGCCCTTATG
1 AGGTAAAATGACTGTTTTGCCCTCATG
* ***
62796167 TGGTAAAATGACTGAAATGCCCCTACAT-
1 AGGTAAAATGACTGTTTTG-CCCT-CATG
*
62796195 -GGTAAAATGATTGTTTTGCCCT
1 AGGTAAAATGACTGTTTTGCCCT
62796217 ATGTGCTATA
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.06
27 53 0.84
28 4 0.06
29 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (27 bp):
AGGTAAAATGACTGTTTTGCCCTCATG
Found at i:62800449 original size:27 final size:27
Alignment explanation
Indices: 62800418--62800595 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62800408 TAAATTGTAC
62800418 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62800445 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62800471 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62800499 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62800527 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62800554 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62800581 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62800596 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62800532 original size:82 final size:81
Alignment explanation
Indices: 62800419--62800574 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62800409 AAATTGTACA
* *
62800419 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
62800483 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62800500 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
62800565 TGCGAGTTGA
65 TGCGAATTGA
62800575 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62800586 original size:82 final size:81
Alignment explanation
Indices: 62800415--62800595 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
62800405 GATTAAATTG
* *
62800415 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62800480 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
62800496 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62800560 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62800578 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
62800596 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62808462 original size:27 final size:27
Alignment explanation
Indices: 62808431--62808608 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62808421 TAAATTGTAC
62808431 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62808458 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62808484 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62808512 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62808540 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62808567 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62808594 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62808609 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Done.