Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 194 of 316
Found at i:62808545 original size:82 final size:81
Alignment explanation
Indices: 62808432--62808587 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62808422 AAATTGTACA
* *
62808432 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
62808496 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62808513 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
62808578 TGCGAGTTGA
65 TGCGAATTGA
62808588 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62808599 original size:82 final size:81
Alignment explanation
Indices: 62808428--62808608 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
62808418 GATTAAATTG
* *
62808428 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62808493 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
62808509 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62808573 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62808591 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
62808609 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62811151 original size:14 final size:15
Alignment explanation
Indices: 62811127--62811155 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62811117 TGTAGGCTTC
62811127 TATCATTTTCCATAG
1 TATCATTTTCCATAG
62811142 TATC-TTTTCCATAG
1 TATCATTTTCCATAG
62811156 CATTCTTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.24, C:0.21, G:0.07, T:0.48
Consensus pattern (15 bp):
TATCATTTTCCATAG
Found at i:62813694 original size:43 final size:41
Alignment explanation
Indices: 62813546--62813704 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 41
62813536 TATGTGATTT
* *
62813546 CGTGTAAGACCACGTCTGGGAC-GTTGGAATCGACTTCTATTTTA
1 CGTGTAAGACCACGTCTGGGACAG-TGGCATCGA-TT-T-TATTA
* * * * *
62813590 CGTGTAAGACCATGTCTGGGACA-TCGGCATTGTATCTAATTT
1 CGTGTAAGACCACGTCTGGGACAGT-GGCATCG-ATTTTATTA
62813632 CGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATGTTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACAGTGGCATCGAT-TTT-ATTA
* *
62813675 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACAGTGGCAT
62813705 TGTATATGTT
Statistics
Matches: 93, Mismatches: 14, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 32 0.34
44 28 0.30
45 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (41 bp):
CGTGTAAGACCACGTCTGGGACAGTGGCATCGATTTTATTA
Found at i:62820899 original size:42 final size:41
Alignment explanation
Indices: 62820835--62820968 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 41
62820825 CATGTAATCA
62820835 CATAT-CGATGCCACTGTCCCAGACAGGGTCTTACACAAACT
1 CATATACGATGCCA-TGTCCCAGACAGGGTCTTACACAAACT
*
62820876 CATATACGATGCCGATGTCCCAGACATGGTCTTACACGCAAA-T
1 CATATACGATGCC-ATGTCCCAGACAGGGTCTTACA--CAAACT
* * * * *
62820919 CACAAATCGATGCCAACGTCCTAGAC-GTGGTCTTACACGAACT
1 CATATA-CGATGCC-ATGTCCCAGACAG-GGTCTTACACAAACT
62820962 CATATAC
1 CATATAC
62820969 CGAAATCCTA
Statistics
Matches: 76, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
41 5 0.07
42 31 0.41
43 11 0.14
44 29 0.38
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (41 bp):
CATATACGATGCCATGTCCCAGACAGGGTCTTACACAAACT
Found at i:62820951 original size:86 final size:85
Alignment explanation
Indices: 62820807--62820968 Score: 229
Period size: 86 Copynumber: 1.9 Consensus size: 85
62820797 CAATGCTAAC
* * * *
62820807 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACA
1 GTCCCAGACATGGTCTTACACGAAATCACAAATCGATGCCACTGTCCCAGACAGGGTCTTACACA
62820872 AACTCATATACGATGCCGAT
66 AACTCATATACGATGCCGAT
*
62820892 GTCCCAGACATGGTCTTACACGCAAATCACAAATCGATGCCAAC-GTCCTAGAC-GTGGTCTTAC
1 GTCCCAGACATGGTCTTACACG-AAATCACAAATCGATGCC-ACTGTCCCAGACAG-GGTCTTAC
*
62820955 ACGAACTCATATAC
63 ACAAACTCATATAC
62820969 CGAAATCCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 21 0.31
86 45 0.66
87 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACGAAATCACAAATCGATGCCACTGTCCCAGACAGGGTCTTACACA
AACTCATATACGATGCCGAT
Found at i:62823111 original size:71 final size:67
Alignment explanation
Indices: 62823034--62823175 Score: 203
Period size: 67 Copynumber: 2.1 Consensus size: 67
62823024 TCACCAGATA
* * *
62823034 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
62823099 GGCTGC
62 GGCTGC
* *
62823105 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
62823170 GC
66 GC
62823172 CAGA
1 CAGA
62823176 ACGCTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
67 41 0.62
71 25 0.38
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:62823153 original size:27 final size:26
Alignment explanation
Indices: 62823105--62823156 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62823095 GCGAGGCTGC
*
62823105 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
62823131 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
62823157 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:62823781 original size:26 final size:27
Alignment explanation
Indices: 62823752--62823805 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
62823742 TCACACAAGT
*
62823752 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
62823778 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
62823805 T
1 T
62823806 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:62823855 original size:27 final size:27
Alignment explanation
Indices: 62823807--62823977 Score: 168
Period size: 27 Copynumber: 6.4 Consensus size: 27
62823797 GGGCAAAATG
* * ** *
62823807 GTAATTTTACCCCACAAAGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
62823834 TTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
62823861 GTATTTCTATCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
** *
62823888 GTAATTCTATTCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
62823915 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
62823941 GATAATTCTACCTTACA-GGGTATTTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
62823967 GATAATTCTAC
1 G-TAATTCTAC
62823978 AACTTATCTA
Statistics
Matches: 122, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
26 21 0.17
27 101 0.83
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:62830650 original size:27 final size:26
Alignment explanation
Indices: 62830602--62830661 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
62830592 GCGAAGCTGC
*
62830602 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
62830629 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
62830655 CAGATAT
1 CAGATAT
62830662 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:62830722 original size:71 final size:67
Alignment explanation
Indices: 62830629--62830770 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 67
62830619 TCACCAGATA
* * * *
62830629 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTAGCGAAGCCACCAGATTGCAGCGA
62830694 GGCTGC
62 GGCTGC
* * *
62830700 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTAGCGAGGCCACCAGATTGTAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTAGCGAAGCCACCAGATTGCAGCGAGGCT
62830765 GC
66 GC
62830767 CAGA
1 CAGA
62830771 ACGCTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 39 0.61
71 25 0.39
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTAGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:62832336 original size:39 final size:40
Alignment explanation
Indices: 62832222--62832406 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
62832212 GCTACTCGTT
*
62832222 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
62832262 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
62832302 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
62832341 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
62832382 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62832407 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62832390 original size:79 final size:81
Alignment explanation
Indices: 62832222--62832406 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
62832212 GCTACTCGTT
* * *
62832222 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
62832286 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* **
62832303 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCA
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCA
* *
62832365 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
62832382 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
62832407 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCAC
Found at i:62840050 original size:38 final size:40
Alignment explanation
Indices: 62839942--62840124 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
62839932 GCTACTCGTT
*
62839942 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTC-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
62839981 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
62840021 CCAATGCCTTC-GG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
62840059 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
62840100 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62840125 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 35 0.28
39 34 0.27
40 45 0.36
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62840108 original size:78 final size:79
Alignment explanation
Indices: 62839942--62840124 Score: 205
Period size: 78 Copynumber: 2.3 Consensus size: 79
62839932 GCTACTCGTT
* *
62839942 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCCACAAATGCCTTCGGGACTTAACCCGG
* *
62840006 ATTTAGTAACTCGCAC
64 ATATAGTAACTAGCAC
* **
62840022 CAATGCCTTC-GG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTC-CACAAATGCCTTCGGGA-CTTAACCCGG
* *
62840084 ATATGGTCACTTAGCA-
64 ATATAGTAAC-TAGCAC
62840100 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
62840125 CATCATTCGA
Statistics
Matches: 87, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
77 21 0.24
78 40 0.46
79 12 0.14
80 14 0.16
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCAC
Found at i:62848090 original size:79 final size:80
Alignment explanation
Indices: 62847992--62848174 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
62847982 TACTCGTTCA
* *
62847992 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
62848055 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
62848072 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
62848136 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
62848151 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
62848175 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:62848174 original size:40 final size:40
Alignment explanation
Indices: 62847990--62848174 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
62847980 GCTACTCGTT
* *
62847990 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62848030 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
62848070 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
62848109 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
62848150 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62848175 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:62861123 original size:75 final size:75
Alignment explanation
Indices: 62860997--62861145 Score: 289
Period size: 75 Copynumber: 2.0 Consensus size: 75
62860987 GCCGTACCCG
62860997 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
1 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
62861062 AAGTTTTTAT
66 AAGTTTTTAT
*
62861072 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAATGTACCAAATTGGGTCACC
1 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
62861137 AAGTTTTTA
66 AAGTTTTTA
62861146 CTCAAATTTT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (75 bp):
ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
AAGTTTTTAT
Found at i:62871852 original size:559 final size:558
Alignment explanation
Indices: 62870796--62871913 Score: 1640
Period size: 559 Copynumber: 2.0 Consensus size: 558
62870786 TTTTGAACAT
**
62870796 AAACCCTAGCATGAAATATGGGTAGAAATGAAAAGAGCAAACTACCGGGATTTCAAAAATACAAA
1 AAACCCTAGCATGAAATATGGGTAGAAATGAAAAGAGCAAACTACCGAAATTTCAAAAATACAAA
* * *
62870861 GAACATGAAAAACGGGGCTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGGAAACCCTTGCTA
66 GAACATGAAAAACGGGACTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGAAAACCCTAGCTA
* *
62870926 TGATGGCTTAGGAATTTAGGCTAGACAAGGAAAAAGAATGGCTGAATTTTGCCTTCTTTTTCCCA
131 TGAGGGCTTAGGAATTTAGACTAGACAAGGAAAAAGAATGGCTGAATTTTGCCTTCTTTTTCCCA
* * *
62870991 TTTTATTTCATAAGTATGCCAAATGACCAAAATGTCCTTAAGCCATTTCTTAAAAATTTCATCCA
196 TTTTATTTCATAAGAATGCCAAATAACCAAAATGCCCTTAAGCCATTTCTTAAAAATTTCATCCA
** ** *
62871056 TGCAAGCCCATTTTTGTCTGAAAACTTAAAAATTGGGCAAATTGCTCCCCAAGACCTTCTATTTT
261 TGCAAGCCCATTTTTGTCCAAAAACTTAAAAATTGGAAAAATTGCTCCCCAAGACCTTCTAATTT
* * * *
62871121 ATAATCTAAAACAATTTTATGCAAATTTCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAG
326 ATAATCGAAAACAATTTCATACAAATTGCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAG
* * * * * *
62871186 TTCCTAATTTCCAATTGGACATCTTATACTTAGGAATTCTTCACGAAACTTTAAGACATGCGTAT
391 TCCCTAATTTCCAATTGGACACCTTATACTAAAGAATTCTTCACGAAACTTTAACACATGCATAT
* *
62871251 ACTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGGTGTC-GAATTTGTGGTCCCG
456 ACTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGATGTCTG-ATTTGTGGTCCCA
62871315 AAACCACTATTCTGACTAGGCCCTATTTCAGGATGTTAC
520 AAACCACTATTCTGACTAGGCCCTATTTCAGGATGTTAC
* * * *
62871354 AAACCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGCTACTGAAATTTCAAAAATACAAA
1 AAACCCTAGCATGAAATATGGGTAGAAATGAAAAGAGCAAACTACCGAAATTTCAAAAATACAAA
* *
62871419 GAACATTAAAAACGGGATTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGAAAACCCTAGCTA
66 GAACATGAAAAACGGGACTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGAAAACCCTAGCTA
* * * * * *
62871484 TGGAGGGCTT-GAGAGTTTCGACTGGTACAAAGG-AGAA-AATGGCTGATTTTTG-TTTCATTTT
131 T-GAGGGCTTAG-GAATTTAGACTAG-AC-AAGGAAAAAGAATGGCTGAATTTTGCCTTC-TTTT
* *
62871545 TCCCATTTTATTTCATTAA-AATGCCAAATAACCAAAATGCCCTTAAGCCCTTTCTTTAAAATTT
191 TCCCATTTTATTTCA-TAAGAATGCCAAATAACCAAAATGCCCTTAAGCCATTTCTTAAAAATTT
* * * * *
62871609 CATTCATGCAAGCCCATTTTTGTCCAAAAACTTAGAAATTGGAAAAATTTCTCTCTAAGACCTTC
255 CATCCATGCAAGCCCATTTTTGTCCAAAAACTTAAAAATTGGAAAAATTGCTCCCCAAGACCTTC
62871674 TAATTTATAATCGAAAACAATTTCATACAAATTGCTTCTAGAATCCAAGTTTTGCAATTTATTCA
320 TAATTTATAATCGAAAACAATTTCATACAAATTGCTTCTAGAATCCAAGTTTTGCAATTTATTCA
*
62871739 ATTTAGTCCCTAATTTCCAATTGGACACC-T-TACTCAAAGAATTTCTTCATGAAACTTTAACAC
385 ATTTAGTCCCTAATTTCCAATTGGACACCTTATACT-AAAGAA-TTCTTCACGAAACTTTAACAC
*
62871802 ATGCATATTCTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGATGTCTGATTTGT
448 ATGCATATACTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGATGTCTGATTTGT
* * *
62871867 GGTCCTAAAACCACTATTCTGACTAGGCCTTATTTCGGGATGTTAC
513 GGTCCCAAAACCACTATTCTGACTAGGCCCTATTTCAGGATGTTAC
62871913 A
1 A
62871914 TCTAGGCTTC
Statistics
Matches: 500, Mismatches: 51, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
557 4 0.01
558 129 0.26
559 354 0.71
560 9 0.02
561 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32
Consensus pattern (558 bp):
AAACCCTAGCATGAAATATGGGTAGAAATGAAAAGAGCAAACTACCGAAATTTCAAAAATACAAA
GAACATGAAAAACGGGACTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGAAAACCCTAGCTA
TGAGGGCTTAGGAATTTAGACTAGACAAGGAAAAAGAATGGCTGAATTTTGCCTTCTTTTTCCCA
TTTTATTTCATAAGAATGCCAAATAACCAAAATGCCCTTAAGCCATTTCTTAAAAATTTCATCCA
TGCAAGCCCATTTTTGTCCAAAAACTTAAAAATTGGAAAAATTGCTCCCCAAGACCTTCTAATTT
ATAATCGAAAACAATTTCATACAAATTGCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAG
TCCCTAATTTCCAATTGGACACCTTATACTAAAGAATTCTTCACGAAACTTTAACACATGCATAT
ACTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGATGTCTGATTTGTGGTCCCAA
AACCACTATTCTGACTAGGCCCTATTTCAGGATGTTAC
Found at i:62875556 original size:6 final size:6
Alignment explanation
Indices: 62875545--62875596 Score: 70
Period size: 6 Copynumber: 8.3 Consensus size: 6
62875535 TTCTTTTCAG
62875545 TTTTAT TTTTAT TTTTAT TTTTA- TTTTAT TTTTCATT GTTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT-A-T -TTTTAT TTTTAT
62875595 TT
1 TT
62875597 CTTAGACTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
5 5 0.12
6 29 0.69
7 2 0.05
8 2 0.05
9 4 0.10
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:62878428 original size:47 final size:47
Alignment explanation
Indices: 62878371--62878715 Score: 459
Period size: 47 Copynumber: 7.4 Consensus size: 47
62878361 ATTGATGTAC
* *
62878371 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
* * * *
62878418 AAGTATATATATATGTGATAGGGCTGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
*
62878467 AAGTGTATATA--TG-T---GCCGAGTGGCCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
* * * *
62878508 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
*
62878555 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
* * * *
62878602 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
* *
62878649 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
*
62878696 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
62878716 TCCCGAAGGG
Statistics
Matches: 271, Mismatches: 19, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
41 37 0.14
43 2 0.01
44 2 0.01
45 2 0.01
47 183 0.68
49 45 0.17
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
Found at i:62881208 original size:38 final size:38
Alignment explanation
Indices: 62881144--62881218 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
62881134 AATCCGAGTT
*
62881144 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
62881182 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
62881219 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:62881331 original size:40 final size:40
Alignment explanation
Indices: 62881276--62881595 Score: 451
Period size: 40 Copynumber: 8.0 Consensus size: 40
62881266 CTCGACAATG
*
62881276 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
62881316 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
62881356 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
62881396 ATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
62881436 ATCCGGGCTAAGTCCTGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
62881476 ATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
62881516 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
62881556 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
62881596 GTATTCGGGC
Statistics
Matches: 250, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 250 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:62883086 original size:46 final size:45
Alignment explanation
Indices: 62883036--62883211 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
62883026 GGTTGAGCAT
62883036 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGC
* * * * *
62883082 CCGAACTCATTGAGTTGAGTCCGAATTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--GC
* * *
62883127 ATCCGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGTGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGC
*
62883175 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
62883212 CGGGTTACAT
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 62 0.58
47 24 0.22
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGC
Found at i:62887781 original size:47 final size:47
Alignment explanation
Indices: 62887724--62888068 Score: 468
Period size: 47 Copynumber: 7.4 Consensus size: 47
62887714 ATTGATGTAC
* *
62887724 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
* * *
62887771 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
*
62887820 AAGTGTATATA--TG-T---GCCGAGTGGCCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
* * * *
62887861 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
*
62887908 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
* * * *
62887955 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
* *
62888002 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
*
62888049 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
62888069 TCCCGAAGGG
Statistics
Matches: 273, Mismatches: 17, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
41 38 0.14
43 2 0.01
44 2 0.01
45 2 0.01
47 183 0.67
49 46 0.17
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
Found at i:62890126 original size:27 final size:27
Alignment explanation
Indices: 62890096--62890164 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
62890086 TAAATTGTAC
* *
62890096 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTACAT
*
62890123 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTACAT
*
62890150 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62890165 GACTCAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTACAT
Found at i:62898044 original size:27 final size:27
Alignment explanation
Indices: 62898013--62898190 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
62898003 TAAATTGTAC
62898013 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62898040 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
62898066 ATGCACTAAGTGTGCCAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62898094 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62898122 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62898149 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62898176 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62898191 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62898181 original size:82 final size:81
Alignment explanation
Indices: 62898010--62898190 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
62898000 GATTAAATTG
* *
62898010 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62898075 GTGTGCCAATTGACCA
66 GTGTGCCAATTGACCA
* * ** *
62898091 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
62898155 AAGTGTGCGAGTTGATTA
64 AAGTGTGCCAATTGACCA
* *
62898173 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
62898191 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCCAATTGACCA
Found at i:62905191 original size:48 final size:48
Alignment explanation
Indices: 62905108--62905201 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
62905098 AGGGAATTCT
* * *
62905108 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTAACTTAGGCGTTTTTACG
62905156 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTAACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTAACTTAGGCGTTTTTA
62905202 AGCCAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 2 0.05
48 39 0.95
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTAACTTAGGCGTTTTTACG
Found at i:62905729 original size:46 final size:46
Alignment explanation
Indices: 62905659--62905831 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
62905649 TGGGCATCCA
*
62905659 AGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * * *
62905705 ACCTCGTTGAGTTGAGTCCCAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* * *
62905752 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACGCCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
62905798 AGCTCGTTGAGTTGACTCCAAGTTCGCTTATGGA
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
62905832 CGGGTTACAT
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 55 0.55
47 27 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:62905810 original size:93 final size:93
Alignment explanation
Indices: 62905651--62905823 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
62905641 AGGATATTTG
* *
62905651 GGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGTCCGACCTCGTTGAG
1 GGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGACCTCGTTGAG
* *
62905716 TTGAGTCCCAGTTCGTGAGATGTAACTA
66 TTGACTCCAAGTTCGTGAGATGTAACTA
* * * *
62905744 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGACCTCGTTGAG
62905809 TTGACTCCAAGTTCG
66 TTGACTCCAAGTTCG
62905824 CTTATGGACG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGACCTCGTTGAG
TTGACTCCAAGTTCGTGAGATGTAACTA
Found at i:62913366 original size:46 final size:46
Alignment explanation
Indices: 62913299--62913427 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
62913289 TATTTGAGCA
* *
62913299 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
62913345 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
62913391 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62913428 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.18, C:0.22, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:62924064 original size:21 final size:21
Alignment explanation
Indices: 62924040--62924081 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
62924030 TGAACTTGTT
62924040 GGGAAGAGATCGCAACATGTC
1 GGGAAGAGATCGCAACATGTC
62924061 GGGAAGAGATCGCAACATGTC
1 GGGAAGAGATCGCAACATGTC
62924082 TATTTACTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.33, T:0.14
Consensus pattern (21 bp):
GGGAAGAGATCGCAACATGTC
Found at i:62926524 original size:51 final size:51
Alignment explanation
Indices: 62926448--62926567 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
62926438 AACTCAGTTA
* *
62926448 TCCGGATAAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATTAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
* * *
62926499 TCCGGATGAAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
*
62926550 TCCGGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
62926568 TAAGTTTGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
Found at i:62935244 original size:24 final size:24
Alignment explanation
Indices: 62935217--62935265 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
62935207 AAGAAAAGTT
62935217 AAGAATTACTGCATATAAGACATA
1 AAGAATTACTGCATATAAGACATA
62935241 AAGAATTACTGCATATAAGACATA
1 AAGAATTACTGCATATAAGACATA
62935265 A
1 A
62935266 TAATCATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.24
Consensus pattern (24 bp):
AAGAATTACTGCATATAAGACATA
Found at i:62940532 original size:17 final size:17
Alignment explanation
Indices: 62940510--62940544 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
62940500 GCTAAGCTTT
62940510 ATCACACTTTATTCGAC
1 ATCACACTTTATTCGAC
62940527 ATCACACTTTATTCGAC
1 ATCACACTTTATTCGAC
62940544 A
1 A
62940545 GCACCAACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (17 bp):
ATCACACTTTATTCGAC
Found at i:62941274 original size:27 final size:28
Alignment explanation
Indices: 62941214--62941274 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 28
62941204 AAATCATAAA
**
62941214 TTGGTACTTAATTTTTTTTTGTCACAAG
1 TTGGTACTTAATCATTTTTTGTCACAAG
*
62941242 -TAGTACTTAAATCATTTTTT-TC-CAAG
1 TTGGTACTT-AATCATTTTTTGTCACAAG
62941268 TTGGTAC
1 TTGGTAC
62941275 CTCTATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
26 4 0.15
27 14 0.52
28 9 0.33
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (28 bp):
TTGGTACTTAATCATTTTTTGTCACAAG
Found at i:62941473 original size:19 final size:19
Alignment explanation
Indices: 62941445--62941481 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
62941435 AAGACAAAAA
*
62941445 ATATTATTTTTTCTTTTAT
1 ATATTATTTTTACTTTTAT
*
62941464 ATATTGTTTTTACTTTTA
1 ATATTATTTTTACTTTTA
62941482 AATTTTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (19 bp):
ATATTATTTTTACTTTTAT
Found at i:62943651 original size:48 final size:48
Alignment explanation
Indices: 62943516--62943744 Score: 262
Period size: 48 Copynumber: 4.8 Consensus size: 48
62943506 TCTTAAATCG
* * * *
62943516 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATACCA
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
**
62943564 ATGCCATATCCCA-ATGTGGTCTTACATGAGATCACATATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* * * * *
62943611 ATGTCATATCCCATATATGGTCTTACATGGGATCACATATCAATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* * * * * *
62943659 ATGCCATGTCTCAGACATGGTTTTACATGGGATAACACATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* * * *
62943707 ATGTCATGTCCTAGACGTGGTCTTACATGAGATCACAT
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACAT
62943745 GTAACCCTAA
Statistics
Matches: 153, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
47 41 0.27
48 112 0.73
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
Found at i:62949456 original size:27 final size:27
Alignment explanation
Indices: 62949425--62949479 Score: 94
Period size: 27 Copynumber: 2.0 Consensus size: 27
62949415 TAAATAAGTG
62949425 TTAATAAATATG-CTTTTAATCTGAACA
1 TTAATAAATATGTC-TTTAATCTGAACA
62949452 TTAATAAATATGTCTTTAATCTGAACA
1 TTAATAAATATGTCTTTAATCTGAACA
62949479 T
1 T
62949480 GTTAATTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (27 bp):
TTAATAAATATGTCTTTAATCTGAACA
Found at i:62951427 original size:19 final size:18
Alignment explanation
Indices: 62951396--62951448 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
62951386 GAAAGAATTT
*
62951396 GAAAAAGAAAAAAAGAGTGA
1 GAAAAAGAAAAAGAGA-T-A
* *
62951416 GAAAAAGCAAAATGAGATT
1 GAAAAAG-AAAAAGAGATA
62951435 GAAAAAGAAAAAGA
1 GAAAAAGAAAAAGA
62951449 ATGCGAGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 6 0.21
19 7 0.25
20 8 0.29
21 7 0.25
ACGTcount: A:0.68, C:0.02, G:0.23, T:0.08
Consensus pattern (18 bp):
GAAAAAGAAAAAGAGATA
Found at i:62952583 original size:22 final size:23
Alignment explanation
Indices: 62952557--62952601 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
62952547 CATACTTTGT
62952557 TTTGGTTAACTAC-TATTCTCTG
1 TTTGGTTAACTACATATTCTCTG
62952579 TTTGGTTAACTACATTATTCTCT
1 TTTGGTTAACTACA-TATTCTCT
62952602 ATCATTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 13 0.62
24 8 0.38
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.51
Consensus pattern (23 bp):
TTTGGTTAACTACATATTCTCTG
Found at i:62955241 original size:48 final size:48
Alignment explanation
Indices: 62955180--62955537 Score: 581
Period size: 48 Copynumber: 7.3 Consensus size: 48
62955170 TGTATAAGAT
* * *
62955180 AAATATATGTGAGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
62955228 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAA----T---GGCTAGTGTG
*
62955283 AAATATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
62955331 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
62955379 AAATATGTATGAGAGATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
62955427 AAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
62955475 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
62955523 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
62955538 GTGTGTATAT
Statistics
Matches: 291, Mismatches: 12, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
48 243 0.84
51 1 0.00
52 1 0.00
55 46 0.16
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
Found at i:62955728 original size:37 final size:37
Alignment explanation
Indices: 62955678--62955780 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
62955668 GGAAATATAT
62955678 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62955715 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
62955752 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
62955781 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:62956940 original size:56 final size:58
Alignment explanation
Indices: 62956880--62956994 Score: 153
Period size: 56 Copynumber: 2.0 Consensus size: 58
62956870 CTAATACATA
* * * *
62956880 TTTTTAATGTGTCCTAGGTACAACCAAATTTAATTTGTGTTTTAG-TT-ATTACATGTT
1 TTTTTAATATGT-CTAGCTACAACCAAATTTAATTGGTGTTTTAGCTTAAATACATGTT
* *
62956937 TTTTTAATATGTCTAGCTACAGCCGAATTTAATTGGTGTTTTAGCTTAAATACATGTT
1 TTTTTAATATGTCTAGCTACAACCAAATTTAATTGGTGTTTTAGCTTAAATACATGTT
62956995 ACAAATATGT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
56 28 0.56
57 13 0.26
58 9 0.18
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (58 bp):
TTTTTAATATGTCTAGCTACAACCAAATTTAATTGGTGTTTTAGCTTAAATACATGTT
Found at i:62957585 original size:10 final size:10
Alignment explanation
Indices: 62957554--62957587 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
62957544 AAAAAGCAGC
62957554 TTTCTGGAAT
1 TTTCTGGAAT
*
62957564 TTTCTTGAAAT
1 TTTC-TGGAAT
62957575 TTTCTGGAAT
1 TTTCTGGAAT
62957585 TTT
1 TTT
62957588 TCAGCTCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.21, C:0.09, G:0.15, T:0.56
Consensus pattern (10 bp):
TTTCTGGAAT
Found at i:62960081 original size:39 final size:40
Alignment explanation
Indices: 62959964--62960148 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
62959954 GCTACTCGTT
* * * *
62959964 CAAATGCCTTCGGGACATATCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
*
62960004 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* * *
62960044 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
** * * *
62960083 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAAT-TAGTAAC-TCGCA
*
62960124 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
62960149 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 75 0.60
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:62960081 original size:79 final size:80
Alignment explanation
Indices: 62959992--62960148 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
62959982 ATCCTGGTTA
* * *
62959992 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTC
62960055 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
* ** * *
62960071 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
62960136 GACTTAGCCCGGA
66 GACTTAGCCCGGA
62960149 CATCATTCGA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.04
79 49 0.73
80 15 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:62966744 original size:21 final size:22
Alignment explanation
Indices: 62966719--62966759 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
62966709 ACGCATTACG
62966719 GTAGCTCTGATACT-ATAAACC
1 GTAGCTCTGATACTAATAAACC
62966740 GTAGCTCTGATACTAATAAA
1 GTAGCTCTGATACTAATAAA
62966760 ATTGTAACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (22 bp):
GTAGCTCTGATACTAATAAACC
Found at i:62968250 original size:79 final size:81
Alignment explanation
Indices: 62968141--62968323 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
62968131 TACTCGTTCA
* *
62968141 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
62968204 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
62968221 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
62968284 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
62968300 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
62968324 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:62968323 original size:40 final size:40
Alignment explanation
Indices: 62968120--62968323 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
62968110 CGGAATTTAA
** *
62968120 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62968160 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62968200 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62968239 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
62968279 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
62968319 CCGGA
1 CCGGA
62968324 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:62971154 original size:15 final size:17
Alignment explanation
Indices: 62971136--62971167 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
62971126 TAACATAATT
62971136 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
62971151 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
62971168 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:62973261 original size:41 final size:39
Alignment explanation
Indices: 62973216--62973351 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 39
62973206 TATTATAATG
*
62973216 TCGCACACTAAGTGCATCACATAGCCAAAGCTATCTCAA
1 TCGCACACTAAGTGCATCATATAGCCAAAGCTATCTCAA
*
62973255 TCTCGCACACTAAGTGCCA-CATATAGCCGAAGCTA-CTCCGAA
1 --TCGCACACTAAGTG-CATCATATAGCCAAAGCTATCT-C-AA
* ** * *
62973297 TCGCACAATAAGTGTTTTATATAGACAAAGCTATCTCAAA
1 TCGCACACTAAGTGCATCATATAGCCAAAGCTATCTC-AA
*
62973337 ACGCACACTAAGTGC
1 TCGCACACTAAGTGC
62973352 CAGACATAGT
Statistics
Matches: 78, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
40 43 0.55
41 31 0.40
42 4 0.05
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (39 bp):
TCGCACACTAAGTGCATCATATAGCCAAAGCTATCTCAA
Found at i:62975217 original size:17 final size:17
Alignment explanation
Indices: 62975185--62975218 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
62975175 TATGACAGCC
*
62975185 CACATTTTTCATTTATT
1 CACATTTTTCACTTATT
*
62975202 CACATTTTTTACTTATT
1 CACATTTTTCACTTATT
62975219 TTATAGACTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.59
Consensus pattern (17 bp):
CACATTTTTCACTTATT
Found at i:62984387 original size:16 final size:17
Alignment explanation
Indices: 62984368--62984405 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
62984358 CATAATTAAA
*
62984368 ATATATTATAGCATAT-
1 ATATATTAAAGCATATC
*
62984384 ATATATTAAATCATATC
1 ATATATTAAAGCATATC
62984401 ATATA
1 ATATA
62984406 CAGAACATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (17 bp):
ATATATTAAAGCATATC
Found at i:62988408 original size:28 final size:29
Alignment explanation
Indices: 62988375--62988475 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
62988365 TATAGTAAGT
* * *
62988375 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
62988403 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
62988432 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
62988461 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
62988476 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:62996456 original size:29 final size:29
Alignment explanation
Indices: 62996390--62996490 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
62996380 TATAGTAAGT
* *
62996390 CCGCACACTTAGTGTTATA-TA-ATCGAAC
1 CCGCACACTTAGTGCTATACAACAT-GAAC
*
62996418 TCGCACACTTAGTGCTATACAACATGAAC
1 CCGCACACTTAGTGCTATACAACATGAAC
* **
62996447 CTGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACATGAAC
62996476 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
62996491 CAATTTCATG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 17 0.27
29 44 0.70
30 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACATGAAC
Found at i:63014401 original size:29 final size:29
Alignment explanation
Indices: 63014335--63014435 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
63014325 TATAGTAAGT
* *
63014335 CCGCACACTTAGTGTTATA-TA-ATCGAAC
1 CCGCACACTTAGTGCTATACAACAT-GAAC
*
63014363 TCGCACACTTAGTGCTATACAACATGAAC
1 CCGCACACTTAGTGCTATACAACATGAAC
* **
63014392 CTGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACATGAAC
63014421 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
63014436 CAATTTCATG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 17 0.27
29 44 0.70
30 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACATGAAC
Found at i:63019312 original size:33 final size:33
Alignment explanation
Indices: 63019270--63019336 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
63019260 CCCTTTCAAC
*
63019270 TGATTGAACAAGTCGTCAATCCATGGCAAAGGA
1 TGATTGAACAAGTCATCAATCCATGGCAAAGGA
63019303 TGATTGAACAAGTCATCAATCCATGGCAAAGGA
1 TGATTGAACAAGTCATCAATCCATGGCAAAGGA
63019336 T
1 T
63019337 ACTTATTCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (33 bp):
TGATTGAACAAGTCATCAATCCATGGCAAAGGA
Found at i:63040276 original size:51 final size:51
Alignment explanation
Indices: 63040141--63040323 Score: 172
Period size: 51 Copynumber: 3.6 Consensus size: 51
63040131 TGGTTTTAGG
* * * * * * * *
63040141 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CC-AAATAGTTAGG
1 TCACGTGTGTAGTACTAACTGCAGGCTACTATGCGTACCCGACA-ACTTCGA
* * * * * * *
63040191 TCACATGCGTAGTACTAAGTGCAGGCCACCATGCGTACCTGACAACTTTGA
1 TCACGTGTGTAGTACTAACTGCAGGCTACTATGCGTACCCGACAACTTCGA
* *
63040242 TCACGTGTGTGGTATTAACTGCAGGCTACTATGCGTACCCGACAACTTCGA
1 TCACGTGTGTAGTACTAACTGCAGGCTACTATGCGTACCCGACAACTTCGA
* *
63040293 TCATGTGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAACTGCAGGCTACTA
63040324 CGTGTATCAG
Statistics
Matches: 106, Mismatches: 25, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
50 30 0.28
51 74 0.70
52 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAACTGCAGGCTACTATGCGTACCCGACAACTTCGA
Found at i:63040654 original size:16 final size:15
Alignment explanation
Indices: 63040633--63040662 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
63040623 GAATGGAATA
63040633 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
63040649 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
63040663 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:63045386 original size:50 final size:50
Alignment explanation
Indices: 63045311--63045594 Score: 255
Period size: 50 Copynumber: 5.7 Consensus size: 50
63045301 CTGGTACGCA
* *
63045311 TAGTAGCCTGCACTTAGTACTACACACGTGGCTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* * * * * * * * **
63045361 TAGTAGCCTGCGCTTAGTACTACACATGCGACCTATCAATCTGGTACATA
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
63045411 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
** * ** *** * * *
63045461 TAGTATTCTACACTTAGTACTACACACGTGA-TCGAAGTTAAAGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACT-TAA-CCATCTGATACACG
* * * * * * *
63045512 TAGTAGCCTGCACTTAGTACTACACATGCGACTTATCAATCTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
* *
63045562 TAGTAGCTTGCACTTAGTACTACACACGTGACT
1 TAGTAGCCTACACTTAGTACTACACACGTGACT
63045595 CACAACGGAT
Statistics
Matches: 182, Mismatches: 49, Indels: 6
0.77 0.21 0.03
Matches are distributed among these distances:
49 1 0.01
50 147 0.81
51 33 0.18
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACG
Found at i:63045439 original size:100 final size:102
Alignment explanation
Indices: 63045300--63045589 Score: 361
Period size: 100 Copynumber: 2.9 Consensus size: 102
63045290 ACCAAAGCTC
*
63045300 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGGCTTAACCATCTGATACACGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
* * *
63045365 AGCCTGCGCTTAGTACTACACATGCGA-CCTA-TCAA
66 AGCCTGCACTTAGTACTACACACGCGATCCAAGTCAA
** *
63045400 TCTGGTACATATAGTAGCCTACACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
** * * * *
63045465 ATTCTACACTTAGTACTACACACGTGATCGAAGTTAA
66 AGCCTGCACTTAGTACTACACACGCGATCCAAGTCAA
** * * * * * *
63045502 -AGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTATCAATCTGGTACATGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
*
63045566 AGCTTGCACTTAGTACTACACACG
66 AGCCTGCACTTAGTACTACACACG
63045590 TGACTCACAA
Statistics
Matches: 160, Mismatches: 28, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
100 82 0.51
101 75 0.47
102 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (102 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
AGCCTGCACTTAGTACTACACACGCGATCCAAGTCAA
Found at i:63046423 original size:38 final size:38
Alignment explanation
Indices: 63046380--63046455 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
63046370 TTCATCTTTT
*
63046380 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAAGAAGGAGGAA
63046418 TTCATTTCTTTTGGCCGAAAATTCTAAAGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAAGAAGGAGGAA
63046456 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAAGAAGGAGGAA
Found at i:63047736 original size:40 final size:40
Alignment explanation
Indices: 63047642--63047786 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
63047632 TACTCGAATG
*
63047642 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
63047683 ACATCCGGACTAAGAT-CTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
63047723 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
63047763 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
63047787 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:63049227 original size:19 final size:20
Alignment explanation
Indices: 63049199--63049245 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
63049189 AAGAACATGT
63049199 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
63049220 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
63049239 TATATAT
1 TATATAT
63049246 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:63052931 original size:42 final size:42
Alignment explanation
Indices: 63052866--63052982 Score: 153
Period size: 42 Copynumber: 2.8 Consensus size: 42
63052856 CATTAAGATG
* * * * ** *
63052866 TCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTCACA
1 TCAATGCCATATCCCAGATATGGTCTTACACGAAATATCACA
*
63052908 TCGATGCCATATCCCAGATATGGTCTTACACGAAATATCACA
1 TCAATGCCATATCCCAGATATGGTCTTACACGAAATATCACA
*
63052950 TCAATGCCATATCCCAGATATGGTCTTATACGA
1 TCAATGCCATATCCCAGATATGGTCTTACACGA
63052983 GATCTCATCA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (42 bp):
TCAATGCCATATCCCAGATATGGTCTTACACGAAATATCACA
Found at i:63058465 original size:21 final size:21
Alignment explanation
Indices: 63058441--63058482 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
63058431 GAAAAGTTAG
63058441 TAAATTAAAATAAAAACAAAA
1 TAAATTAAAATAAAAACAAAA
* *
63058462 TAAATTACAATAAAAATAAAA
1 TAAATTAAAATAAAAACAAAA
63058483 ATGGCTAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (21 bp):
TAAATTAAAATAAAAACAAAA
Found at i:63065235 original size:22 final size:22
Alignment explanation
Indices: 63065193--63065235 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
63065183 AAATTGGATT
* *
63065193 TAAAAGAAATAAATAATATATA
1 TAAAAGAAATAAAAAAAATATA
63065215 TAAAA-AAATTAAAAAAAATAT
1 TAAAAGAAA-TAAAAAAAATAT
63065236 GAACATATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (22 bp):
TAAAAGAAATAAAAAAAATATA
Found at i:63066335 original size:23 final size:23
Alignment explanation
Indices: 63066304--63066897 Score: 421
Period size: 23 Copynumber: 26.0 Consensus size: 23
63066294 AAATAAGTAC
*
63066304 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTGCAGCAT
* * *
63066327 TTAAGCACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTGCAGCAT
63066350 TTAAACACTTCAA-TTGACAGCAT
1 TTAAACACTTCAATTTG-CAGCAT
* *
63066373 TCAAACACTTCAATTTCCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
* ** *
63066397 TT-AACACCTCAATTAACAACAT
1 TTAAACACTTCAATTTGCAGCAT
* * *
63066419 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTGCAGC-AT
* * * *
63066441 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTGCAGCAT
* *
63066464 CTAAACACTTCAATTTGCAG-TT
1 TTAAACACTTCAATTTGCAGCAT
*
63066486 CTTAAACACTTCAATTTGCAACAT
1 -TTAAACACTTCAATTTGCAGCAT
* * *
63066510 TTAAGCACTTCAATTTACACCAT
1 TTAAACACTTCAATTTGCAGCAT
*
63066533 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
63066556 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
* *
63066579 TCAAACACTTCAATTTGTAGCAGT
1 TTAAACACTTCAATTTGCAGCA-T
*
63066603 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
63066625 TAAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
* ** *
63066649 TT-AACACCTCAATTAACAACAT
1 TTAAACACTTCAATTTGCAGCAT
* * *
63066671 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTGCAGC-AT
* * * * *
63066693 TAAAACA-TCTCAATGTCCAGTAA
1 TTAAACACT-TCAATTTGCAGCAT
* * * *
63066716 CTAAACACTTCAATCTGCAGTAC
1 TTAAACACTTCAATTTGCAGCAT
*
63066739 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTGCAGCAT
* *
63066762 TTAAGCACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
63066785 TTAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
* ** *
63066809 TT-AATA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTGCAGCAT
* *
63066831 TTATACAAC-TCAA-TTACAGCGA-
1 TTAAAC-ACTTCAATTTGCAGC-AT
* * *
63066853 TAAAACA-TCTCAATTTCCAGCAA
1 TTAAACACT-TCAATTTGCAGCAT
*
63066876 CTAAACACTTCAATTTGCAGCA
1 TTAAACACTTCAATTTGCAGCA
63066898 CAGCAGCCAT
Statistics
Matches: 453, Mismatches: 87, Indels: 62
0.75 0.14 0.10
Matches are distributed among these distances:
21 1 0.00
22 59 0.13
23 377 0.83
24 16 0.04
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (23 bp):
TTAAACACTTCAATTTGCAGCAT
Found at i:63066749 original size:252 final size:253
Alignment explanation
Indices: 63066304--63066812 Score: 867
Period size: 252 Copynumber: 2.0 Consensus size: 253
63066294 AAATAAGTAC
* * * *
63066304 TTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTGCAGTACTTAAACACTTCAATTGACA
1 TTAAACACTTCAATTTACAACATTCAAACACTTCAATTTGCAGCACTTAAACACTTCAATTGACA
*
63066369 GCATTCAAACACTTCAATTTCCAGCACTTTAACACCTCAATTAACAACATTTATACACCTCAATT
66 GCATTAAAACACTTCAATTTCCAGCACTTTAACACCTCAATTAACAACATTTATACACCTCAATT
* *
63066434 ACAGCGATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAGTTCTTAAACACTTCA
131 ACAGCGATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATCTGCAGTACTTAAACACTTCA
63066499 ATTTGCAACATTTAAGCACTTCAATTTACACCATTTAAACACTTCAATTTACAGCA-T
196 ATTTGCAACATTTAAGCACTTCAATTTACACCATTTAAACACTTCAATTTACAGCACT
* * * * *
63066556 TTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGTAGCAGTTTAACACTTCAATTTACA
1 TTAAACACTTCAATTTACAACATTCAAACACTTCAATTTGCAGCACTTAAACACTTCAATTGACA
*
63066621 GCATTAAAACACTTCAATTTGCAGCACTTTAACACCTCAATTAACAACATTTATACACCTCAATT
66 GCATTAAAACACTTCAATTTCCAGCACTTTAACACCTCAATTAACAACATTTATACACCTCAATT
*
63066686 ACAGCGATAAAACATCTCAATGTCCAGTAACTAAACACTTCAATCTGCAGTACTTAAACACTTCA
131 ACAGCGATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATCTGCAGTACTTAAACACTTCA
* *
63066751 ATTTGCAACATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACT
196 ATTTGCAACATTTAAGCACTTCAATTTACACCATTTAAACACTTCAATTTACAGCACT
63066809 TTAA
1 TTAA
63066813 TATCTCAATT
Statistics
Matches: 240, Mismatches: 16, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
252 235 0.98
253 5 0.02
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (253 bp):
TTAAACACTTCAATTTACAACATTCAAACACTTCAATTTGCAGCACTTAAACACTTCAATTGACA
GCATTAAAACACTTCAATTTCCAGCACTTTAACACCTCAATTAACAACATTTATACACCTCAATT
ACAGCGATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATCTGCAGTACTTAAACACTTCA
ATTTGCAACATTTAAGCACTTCAATTTACACCATTTAAACACTTCAATTTACAGCACT
Found at i:63066754 original size:160 final size:160
Alignment explanation
Indices: 63066466--63066897 Score: 552
Period size: 160 Copynumber: 2.7 Consensus size: 160
63066456 TCCAGCAACT
** * * **
63066466 AAACACTTCAATTTGCAGTTCTTAAACACTTCAATTTGCAACATTTA-AGC-ACTTCAATTTACA
1 AAACACTTCAATTTGCAGCACTTTAACACCTCAATTAACAACATTTATA-CAAC-TCAA-TTACA
* * * * ** *
63066529 -CCATTTAAACA-CTTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTCAAACACTTCAA
63 GCGA-TAAAACATC-TCAATGTCCAGCAACTAAACACTTCAATTTGCAGCATTCAAACACTTCAA
* *
63066592 TTTGTAGCAGTTTAA-CACTTCAATTTACAGCATTA
126 TTTGCAACA-TTTAAGCACTTCAATTTACAGCATTA
*
63066627 AAACACTTCAATTTGCAGCACTTTAACACCTCAATTAACAACATTTATACACCTCAATTACAGCG
1 AAACACTTCAATTTGCAGCACTTTAACACCTCAATTAACAACATTTATACAACTCAATTACAGCG
* * *
63066692 ATAAAACATCTCAATGTCCAGTAACTAAACACTTCAATCTGCAGTACTT-AAACACTTCAATTTG
66 ATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAGCA-TTCAAACACTTCAATTTG
*
63066756 CAACATTTAAGCACTTCAATTTACAGCATTT
130 CAACATTTAAGCACTTCAATTTACAGCATTA
* *
63066787 AAACACTTCAATTTGCAGCACTTTAATATCTCAATTAACAACATTTATACAACTCAATTACAGCG
1 AAACACTTCAATTTGCAGCACTTTAACACCTCAATTAACAACATTTATACAACTCAATTACAGCG
*
63066852 ATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGCA
66 ATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAGCA
63066898 CAGCAGCCAT
Statistics
Matches: 238, Mismatches: 27, Indels: 13
0.86 0.10 0.05
Matches are distributed among these distances:
159 5 0.02
160 180 0.76
161 51 0.21
162 2 0.01
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.31
Consensus pattern (160 bp):
AAACACTTCAATTTGCAGCACTTTAACACCTCAATTAACAACATTTATACAACTCAATTACAGCG
ATAAAACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAGCATTCAAACACTTCAATTTGC
AACATTTAAGCACTTCAATTTACAGCATTA
Found at i:63070384 original size:8 final size:8
Alignment explanation
Indices: 63070373--63070400 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
63070363 AATTTTTGAG
63070373 TTTTTAAT
1 TTTTTAAT
63070381 TTTTTAAT
1 TTTTTAAT
63070389 TTTTTAAT
1 TTTTTAAT
63070397 TTTT
1 TTTT
63070401 ATTTTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTAAT
Found at i:63070384 original size:16 final size:16
Alignment explanation
Indices: 63070360--63070400 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
63070350 ATATTAAATA
* *
63070360 TTAAATTTTTGAGTTT
1 TTAATTTTTTAAGTTT
*
63070376 TTAATTTTTTAATTTT
1 TTAATTTTTTAAGTTT
63070392 TTAATTTTT
1 TTAATTTTT
63070401 ATTTTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (16 bp):
TTAATTTTTTAAGTTT
Found at i:63071391 original size:7 final size:7
Alignment explanation
Indices: 63071324--63071390 Score: 62
Period size: 7 Copynumber: 9.4 Consensus size: 7
63071314 TGGCCATTAG
63071324 ACCTTAA
1 ACCTTAA
*
63071331 ACCATAAA
1 ACC-TTAA
*
63071339 ACCCTAA
1 ACCTTAA
* *
63071346 ACCATAG
1 ACCTTAA
63071353 ACCTTAA
1 ACCTTAA
63071360 ACCTTAA
1 ACCTTAA
63071367 ACCTTAA
1 ACCTTAA
**
63071374 ATATTAA
1 ACCTTAA
*
63071381 ACCCTAA
1 ACCTTAA
63071388 ACC
1 ACC
63071391 CAAAAATAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 41 0.87
8 6 0.13
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.22
Consensus pattern (7 bp):
ACCTTAA
Found at i:63072395 original size:37 final size:37
Alignment explanation
Indices: 63072336--63072444 Score: 175
Period size: 37 Copynumber: 2.9 Consensus size: 37
63072326 AGCTCAGATG
*
63072336 AAATCTCCACACG-AAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAA-TCATCGGGTCTTACCCGGACA
63072373 AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
* *
63072410 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAATCATCGGGTCTTACCCGGA
63072445 ATATATTTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 66 0.97
38 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAATCATCGGGTCTTACCCGGACA
Found at i:63072717 original size:50 final size:50
Alignment explanation
Indices: 63072594--63072888 Score: 456
Period size: 50 Copynumber: 5.9 Consensus size: 50
63072584 CATCGCCTAC
* *
63072594 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
63072642 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
63072692 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC--ATAT
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
*
63072740 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
*
63072792 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
63072842 ATATTTCGCATTAGCCATTCGGCTTTACCACTTATACATATCTCATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
63072889 CATACTTTTC
Statistics
Matches: 233, Mismatches: 6, Indels: 14
0.92 0.02 0.06
Matches are distributed among these distances:
48 88 0.38
49 2 0.01
50 95 0.41
52 48 0.21
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:63072744 original size:98 final size:98
Alignment explanation
Indices: 63072594--63072888 Score: 475
Period size: 98 Copynumber: 3.0 Consensus size: 98
63072584 CATCGCCTAC
* * * *
63072594 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCGCATTAGCCA
63072659 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
63072692 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATATATATTTCGCATTAGCC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATATATTTCGCATTAGCC
63072756 ATTCGGCTTTACCACATATACATATCTCATATATAT
65 ATTCGGCTTTACCACATATACATATCTC--ATATAT
*
63072792 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCGCATTAGC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATATTTCGCATTAGC
*
63072857 CATTCGGCTTTACCACTTATACATATCTCATA
64 CATTCGGCTTTACCACATATACATATCTCATA
63072889 CATACTTTTC
Statistics
Matches: 183, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
97 1 0.01
98 85 0.46
100 49 0.27
101 1 0.01
102 47 0.26
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.37
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCGCATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:63076384 original size:40 final size:40
Alignment explanation
Indices: 63076340--63076697 Score: 522
Period size: 40 Copynumber: 9.0 Consensus size: 40
63076330 GAATACACAT
* * *
63076340 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
63076380 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
63076420 CACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
63076459 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
63076499 CACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
63076538 CACCAACACAAATGCTCTTCAGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
63076578 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
63076618 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
63076658 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
63076698 TATAACTCTC
Statistics
Matches: 281, Mismatches: 35, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
39 69 0.25
40 212 0.75
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:63076563 original size:119 final size:119
Alignment explanation
Indices: 63076352--63076697 Score: 541
Period size: 119 Copynumber: 2.9 Consensus size: 119
63076342 CCAGCATGAT
* *
63076352 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
63076417 CATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATAACACCAGCACAAA
66 CATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATAACACCAGCACAAA
* * *
63076471 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
* * * * * * * * *
63076535 TAACACCAACACAAATGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAACACCAGCACAAA
63076590 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
63076655 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
66 CATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
63076698 TATAACTCTC
Statistics
Matches: 200, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
118 34 0.17
119 115 0.57
120 51 0.25
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATAACACCAGCACAAA
Found at i:63076645 original size:80 final size:80
Alignment explanation
Indices: 63076336--63076697 Score: 647
Period size: 79 Copynumber: 4.5 Consensus size: 80
63076326 GCCCGAATAC
* * * *
63076336 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
63076401 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
63076416 ACATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
63076480 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
63076495 ACATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAACACCAACACAAATGCTCTTCA
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
63076559 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
*
63076574 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
63076639 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
63076654 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
63076698 TATAACTCTC
Statistics
Matches: 272, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
79 155 0.57
80 117 0.43
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (80 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
GGACTTAGCCCGGAT
Found at i:63078014 original size:37 final size:37
Alignment explanation
Indices: 63077955--63078063 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
63077945 AGCTCAGATG
* * *
63077955 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
63077992 AAATCTCCACACGTAGTCATCGGGCCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
63078029 GAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
63078064 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:63078465 original size:15 final size:15
Alignment explanation
Indices: 63078441--63078497 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
63078431 GCTTTACCAC
63078441 ATATACATATCTCAT
1 ATATACATATCTCAT
* * *
63078456 ATATATATATTTCGCAC
1 ATATACATA--TCTCAT
63078473 ATATACATATCTCAT
1 ATATACATATCTCAT
*
63078488 ATATATATAT
1 ATATACATAT
63078498 TTCGCATTAG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
15 21 0.64
17 12 0.36
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.42
Consensus pattern (15 bp):
ATATACATATCTCAT
Found at i:63078474 original size:32 final size:32
Alignment explanation
Indices: 63078438--63078503 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
63078428 TCAGCTTTAC
63078438 CACATATACATATCTCATATATATATATTTCG
1 CACATATACATATCTCATATATATATATTTCG
63078470 CACATATACATATCTCATATATATATATTTCG
1 CACATATACATATCTCATATATATATATTTCG
63078502 CA
1 CA
63078504 TTAGCCATTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.39
Consensus pattern (32 bp):
CACATATACATATCTCATATATATATATTTCG
Found at i:63078476 original size:17 final size:17
Alignment explanation
Indices: 63078456--63078503 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
63078446 CATATCTCAT
63078456 ATATATATATTTCGCAC
1 ATATATATATTTCGCAC
* * *
63078473 ATATACATA--TCTCAT
1 ATATATATATTTCGCAC
63078488 ATATATATATTTCGCA
1 ATATATATATTTCGCA
63078504 TTAGCCATTC
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
15 12 0.50
17 12 0.50
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.42
Consensus pattern (17 bp):
ATATATATATTTCGCAC
Found at i:63078483 original size:84 final size:84
Alignment explanation
Indices: 63078386--63078547 Score: 297
Period size: 84 Copynumber: 1.9 Consensus size: 84
63078376 TCGGCTTTAC
63078386 CACATATACATATCTCATATATATATATTTCACATTAACCATTCAGCTTTACCACATATACATAT
1 CACATATACATATCTCATATATATATATTTCACATTAACCATTCAGCTTTACCACATATACATAT
63078451 CTCATATATATATATTTCG
66 CTCATATATATATATTTCG
* * *
63078470 CACATATACATATCTCATATATATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATAT
1 CACATATACATATCTCATATATATATATTTCACATTAACCATTCAGCTTTACCACATATACATAT
63078535 CTCATATATATAT
66 CTCATATATATAT
63078548 TTCGCATTAG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 75 1.00
ACGTcount: A:0.36, C:0.22, G:0.04, T:0.39
Consensus pattern (84 bp):
CACATATACATATCTCATATATATATATTTCACATTAACCATTCAGCTTTACCACATATACATAT
CTCATATATATATATTTCG
Found at i:63078527 original size:184 final size:181
Alignment explanation
Indices: 63078288--63078645 Score: 576
Period size: 184 Copynumber: 2.0 Consensus size: 181
63078278 TTCGCTTTAC
*
63078288 CACATATACATATCTCATATATATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCT
1 CACATATACATATCTCATATATATATTTCACATTGACCATTCGGCTTTACCACATATACATATCT
63078353 C-ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTC
66 CAATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATA--TC
*
63078417 ACATTAACCATTCAGCTTTACCACATATACATATCTCATATATATATATTTCG
129 ACATTAACCATTCAGCTTTACCACATATACATATCTCATACATATATATTTCG
*
63078470 CACATATACATATCTCATATATATATATTTCGCATT-AGCCATTCGGCTTTACCACATATACATA
1 CACATATACATATCTC--ATATATATATTTCACATTGA-CCATTCGGCTTTACCACATATACATA
* *
63078534 TCTCATATATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATA
63 TCTCA-ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATA
* * *
63078599 TCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
127 TCACATTAACCATTCAGCTTTACCACATATACATATCTCATACATAT
63078646 TTTTCAGCAA
Statistics
Matches: 163, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
182 16 0.10
183 1 0.01
184 89 0.55
186 57 0.35
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (181 bp):
CACATATACATATCTCATATATATATTTCACATTGACCATTCGGCTTTACCACATATACATATCT
CAATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATCAC
ATTAACCATTCAGCTTTACCACATATACATATCTCATACATATATATTTCG
Found at i:63078563 original size:50 final size:50
Alignment explanation
Indices: 63078470--63078659 Score: 317
Period size: 50 Copynumber: 3.7 Consensus size: 50
63078460 ATATATTTCG
63078470 CACATATACATATCTCATATATATATATTTCGCATTAGCCATTCGGCTTTAC
1 CACATATACATATCTC--ATATATATATTTCGCATTAGCCATTCGGCTTTAC
63078522 CACATATACATATCTCATATATATATTTCGCATTAGCCATTCGGCTTTAC
1 CACATATACATATCTCATATATATATTTCGCATTAGCCATTCGGCTTTAC
*
63078572 CACATATACATATCTCATATATATATATCGCATTAGCCATTCGGCTTTAC
1 CACATATACATATCTCATATATATATTTCGCATTAGCCATTCGGCTTTAC
* * *
63078622 CACATATACATATCTCATACATATTTTTCAGCAATAGC
1 CACATATACATATCTCATATATATATTTC-GCATTAGC
63078660 TTATAAGCAA
Statistics
Matches: 132, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
50 109 0.83
51 7 0.05
52 16 0.12
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (50 bp):
CACATATACATATCTCATATATATATTTCGCATTAGCCATTCGGCTTTAC
Found at i:63081179 original size:41 final size:41
Alignment explanation
Indices: 63081070--63081268 Score: 220
Period size: 41 Copynumber: 4.9 Consensus size: 41
63081060 ATTGTATAAC
* *
63081070 TTTTAGCGGCGTTTTACCGAAAGTGCCGCTAATGCTCT-GG
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
* * *
63081110 TTTTGGCGGCGTTTTACTGAAAGAGCCGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
* *
63081151 TTTTAGCGACGTTTGACCGAAAGCGCCGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
** * * ** * *
63081192 TTTTAGTAGCGTTTTACCAAAAGTGTAGCTAATTCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
* * * *
63081233 TTTTAGCGGCATTTTATCGAAAGCGCAGCTATTGCT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCT
63081269 TTTAGCGGCG
Statistics
Matches: 130, Mismatches: 28, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
40 35 0.27
41 95 0.73
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTAGT
Found at i:63081272 original size:35 final size:35
Alignment explanation
Indices: 63081233--63081305 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
63081223 ATTCTCTGGT
*
63081233 TTTTAGCGGCATTTTATCG-AAAGCGCAGCTATTGC
1 TTTTAGCGGCATTTT-TCGTAAAACGCAGCTATTGC
* * *
63081268 TTTTAGCGGCGTTTTTGGTAAAACGCTGCTATTGC
1 TTTTAGCGGCATTTTTCGTAAAACGCAGCTATTGC
63081303 TTT
1 TTT
63081306 GTGTTTTACA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 2 0.06
35 31 0.94
ACGTcount: A:0.19, C:0.18, G:0.23, T:0.40
Consensus pattern (35 bp):
TTTTAGCGGCATTTTTCGTAAAACGCAGCTATTGC
Found at i:63087188 original size:21 final size:21
Alignment explanation
Indices: 63087164--63087206 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
63087154 TTCAATCTTG
*
63087164 TCAAGCTTTTGGATTTGTTCT
1 TCAAGCTTTTGGATTTCTTCT
* *
63087185 TCAATCTTTTTGATTTCTTCT
1 TCAAGCTTTTGGATTTCTTCT
63087206 T
1 T
63087207 GTGATGATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.16, G:0.12, T:0.58
Consensus pattern (21 bp):
TCAAGCTTTTGGATTTCTTCT
Found at i:63088660 original size:48 final size:48
Alignment explanation
Indices: 63088589--63088766 Score: 248
Period size: 48 Copynumber: 3.7 Consensus size: 48
63088579 ATGTCATTAA
* * *
63088589 GAGCTTCATTAATTTGGCTTCAGGCCATGAAATTAGTACTTCGGGTGT
1 GAGCTTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGT
* *
63088637 GAGCTTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTTGGATGT
1 GAGCTTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGT
** * * *
63088685 GAGCTTCATTGATTTGGCTTTGGGCCATGATATTGGCACTTCAGGTGC
1 GAGCTTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGT
* *
63088733 GAGTTTCATTGATTTGGCTTCGGGCCATGATATT
1 GAGCTTCATTGATTTGGCTTCAGGCCATGATATT
63088767 GGTATCTAGG
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 116 1.00
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (48 bp):
GAGCTTCATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGT
Found at i:63101358 original size:40 final size:39
Alignment explanation
Indices: 63101304--63101421 Score: 182
Period size: 40 Copynumber: 2.9 Consensus size: 39
63101294 CGGATGTAAC
* *
63101304 AACCAGCACAAATGCCTTCGGAACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGG-ACTTAACCCGGTTATAAT
63101344 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTC-GGACTTAACCCGGTTATAAT
*
63101384 AACCCGCACGAATGCCTTCAGGACTTAACCCAGTTATA
1 AACCCGCACGAATGCCTTC-GGACTTAACCCGGTTATA
63101422 TTTTTTTTCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 71 0.97
41 2 0.03
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (39 bp):
AACCCGCACGAATGCCTTCGGACTTAACCCGGTTATAAT
Found at i:63115529 original size:51 final size:51
Alignment explanation
Indices: 63115463--63115708 Score: 292
Period size: 51 Copynumber: 4.9 Consensus size: 51
63115453 CACTTGTAGC
* * *
63115463 CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACT-TGA
1 CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACTGCGA
63115513 TCGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA-TGCGA
1 -CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACTGCGA
* * * * *
63115564 CCAA-TTATCTA-GTACACGTAGTAGCCTACACTTAGTACTACACAC-GTGA
1 CGAAGTTATC-AGGTACGCATAGTAGCCTGCACTTAGTACTACACACTGCGA
63115613 TCGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA-TGCGA
1 -CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACTGCGA
* * * *
63115664 CCAA-TTATCTA-GTACACGTAGTAGCCTACACTTAGTACTACACAC
1 CGAAGTTATC-AGGTACGCATAGTAGCCTGCACTTAGTACTACACAC
63115709 GTGACCTCAC
Statistics
Matches: 169, Mismatches: 17, Indels: 19
0.82 0.08 0.09
Matches are distributed among these distances:
49 73 0.43
50 13 0.08
51 83 0.49
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (51 bp):
CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACTGCGA
Found at i:63115642 original size:100 final size:100
Alignment explanation
Indices: 63115482--63115712 Score: 444
Period size: 100 Copynumber: 2.3 Consensus size: 100
63115472 CTGGTACGCA
* *
63115482 TAGTAGCCTGCACTTAGTACTACACACTTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
63115547 TAGTACTACACATGCGACCAATTATCTAGTACACG
66 TAGTACTACACATGCGACCAATTATCTAGTACACG
63115582 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
63115647 TAGTACTACACATGCGACCAATTATCTAGTACACG
66 TAGTACTACACATGCGACCAATTATCTAGTACACG
63115682 TAGTAGCCTACACTTAGTACTACACACGTGA
1 TAGTAGCCTACACTTAGTACTACACACGTGA
63115713 CCTCACAATA
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 129 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
TAGTACTACACATGCGACCAATTATCTAGTACACG
Found at i:63116395 original size:30 final size:30
Alignment explanation
Indices: 63116361--63116420 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
63116351 CTTTAATACG
63116361 AACTTTGGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGAAAAATTACAC-TTTTGCCCCTA
* * *
63116391 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
63116421 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:63118496 original size:15 final size:15
Alignment explanation
Indices: 63118465--63118503 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
63118455 AACAGAGAAG
63118465 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
*
63118481 CCAAGATAAAGGAAT
1 CCAAGATAAAGAAAT
*
63118496 CCATGATA
1 CCAAGATA
63118504 CGAGAATCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:63118914 original size:51 final size:51
Alignment explanation
Indices: 63118838--63118939 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
63118828 GATCGGGGAA
63118838 CATTTCCTTATTTCGAACATTATTCCTTTAACTATTTCTACCATCCCAAAT
1 CATTTCCTTATTTCGAACATTATTCCTTTAACTATTTCTACCATCCCAAAT
63118889 CATTTCCTTATTTCGAACATTATTCCTTTAACTATTTCTACCATCCCAAAT
1 CATTTCCTTATTTCGAACATTATTCCTTTAACTATTTCTACCATCCCAAAT
63118940 TCCATAATAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.27, C:0.27, G:0.02, T:0.43
Consensus pattern (51 bp):
CATTTCCTTATTTCGAACATTATTCCTTTAACTATTTCTACCATCCCAAAT
Found at i:63118926 original size:24 final size:24
Alignment explanation
Indices: 63118846--63118926 Score: 65
Period size: 24 Copynumber: 3.2 Consensus size: 24
63118836 AACATTTCCT
63118846 TATTTCGAACATTATTCCTTTAAC
1 TATTTCGAACATTATTCCTTTAAC
* * * * * *
63118870 TATTTCTACCATCCCAAATCATTT-CC
1 TATTTCGAACAT---TATTCCTTTAAC
63118896 TTATTTCGAACATTATTCCTTTAAC
1 -TATTTCGAACATTATTCCTTTAAC
63118921 TATTTC
1 TATTTC
63118927 TACCATCCCA
Statistics
Matches: 40, Mismatches: 12, Indels: 10
0.65 0.19 0.16
Matches are distributed among these distances:
24 22 0.55
25 1 0.03
26 1 0.03
27 16 0.40
ACGTcount: A:0.27, C:0.25, G:0.02, T:0.46
Consensus pattern (24 bp):
TATTTCGAACATTATTCCTTTAAC
Found at i:63120244 original size:39 final size:39
Alignment explanation
Indices: 63120190--63120267 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
63120180 GATTTATAAG
63120190 TTAGAATCATTAGCTCACTAAAGACAAATATATTTGGCC
1 TTAGAATCATTAGCTCACTAAAGACAAATATATTTGGCC
63120229 TTAGAATCATTAGCTCACTAAAGACAAATATATTTGGCC
1 TTAGAATCATTAGCTCACTAAAGACAAATATATTTGGCC
63120268 AAATAATAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (39 bp):
TTAGAATCATTAGCTCACTAAAGACAAATATATTTGGCC
Found at i:63121377 original size:51 final size:50
Alignment explanation
Indices: 63121311--63121561 Score: 310
Period size: 51 Copynumber: 5.0 Consensus size: 50
63121301 CACTTGTAGC
* * *
63121311 CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA
1 CGAAGTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
* *
63121361 TCGAAGTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA
1 -CGAAGTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
* * *
63121412 CCAA-TTACCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
1 CGAAGTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
* * *
63121461 TCGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA
1 -CGAAGTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
* * * * *
63121512 CCAA-TTATCTA-GTACACGTAGTAACCTACACTTTGTACTACACACGTGA
1 CGAAGTTATC-AGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
63121561 C
1 C
63121562 CTCACAATAG
Statistics
Matches: 173, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
49 78 0.45
50 10 0.06
51 85 0.49
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
CGAAGTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
Found at i:63121495 original size:100 final size:100
Alignment explanation
Indices: 63121322--63121560 Score: 397
Period size: 100 Copynumber: 2.4 Consensus size: 100
63121312 GAAGCTATCT
*
63121322 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACATAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACATAGTAG
63121387 CCTGCACTTAGTACTACACATGCGACCAATTACCC
66 CCTGCACTTAGTACTACACATGCGACCAATTACCC
*
63121422 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACATAGTAG
* *
63121487 CCTGCACTTAGTACTACACATGCGACCAATTATCT
66 CCTGCACTTAGTACTACACATGCGACCAATTACCC
* * * * *
63121522 AGTACACGTAGTAACCTACACTTTGTACTACACACGTGA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
63121561 CCTCACAATA
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 130 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACATAGTAG
CCTGCACTTAGTACTACACATGCGACCAATTACCC
Found at i:63123202 original size:16 final size:16
Alignment explanation
Indices: 63123183--63123213 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63123173 CTTCTTCACT
63123183 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
63123199 TACTTACTTACTTAA
1 TACTCACTTACTTAA
63123214 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:63123219 original size:20 final size:20
Alignment explanation
Indices: 63123180--63123219 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
63123170 AAACTTCTTC
* *
63123180 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
63123200 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
63123220 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:63123629 original size:55 final size:54
Alignment explanation
Indices: 63123405--63123658 Score: 226
Period size: 55 Copynumber: 4.8 Consensus size: 54
63123395 ACATGGGTAC
* * * *
63123405 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAA
* * *
63123454 CTTACC-ATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAA
* * * ** *
63123508 -TCACCAA-TGCCATGCCTTGGCATGTTCTTAC-TGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCC-T-TAGAAA
* *
63123561 CTT-CTCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTAC-CAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAA
*
63123614 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTT
63123659 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 22, Indels: 26
0.78 0.10 0.12
Matches are distributed among these distances:
49 39 0.23
51 2 0.01
52 11 0.07
53 34 0.20
54 39 0.23
55 40 0.24
56 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAA
Found at i:63125179 original size:30 final size:30
Alignment explanation
Indices: 63125145--63125208 Score: 112
Period size: 30 Copynumber: 2.1 Consensus size: 30
63125135 CTTTAAGAGA
63125145 TTAAAAATCACTC-CTCTTAAGTTTTTAAAT
1 TTAAAAATCACTCACTCTTAAGTTTTT-AAT
63125175 TTAAAAATCACTCACTCTTAAGTTTTTAAT
1 TTAAAAATCACTCACTCTTAAGTTTTTAAT
63125205 TTAA
1 TTAA
63125209 GATTTTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 20 0.61
31 13 0.39
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.44
Consensus pattern (30 bp):
TTAAAAATCACTCACTCTTAAGTTTTTAAT
Found at i:63126327 original size:20 final size:20
Alignment explanation
Indices: 63126302--63126347 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
63126292 GTGAGTTACT
*
63126302 CTTTTAGATTTAGTTTTAGA
1 CTTTTACATTTAGTTTTAGA
*
63126322 CTTTTACTTTTAGTTTTAGA
1 CTTTTACATTTAGTTTTAGA
*
63126342 TTTTTA
1 CTTTTA
63126348 TTTTTATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.61
Consensus pattern (20 bp):
CTTTTACATTTAGTTTTAGA
Found at i:63126352 original size:20 final size:20
Alignment explanation
Indices: 63126310--63126353 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
63126300 CTCTTTTAGA
63126310 TTTAGTTTTAGACTTTTACT
1 TTTAGTTTTAGACTTTTACT
* *
63126330 TTTAGTTTTAGATTTTTATT
1 TTTAGTTTTAGACTTTTACT
63126350 TTTA
1 TTTA
63126354 TTTATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.20, C:0.05, G:0.09, T:0.66
Consensus pattern (20 bp):
TTTAGTTTTAGACTTTTACT
Found at i:63129727 original size:15 final size:15
Alignment explanation
Indices: 63129707--63129737 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63129697 AAATATGAAA
63129707 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
63129722 GATATGTTTTGTATT
1 GATATGTTTTGGATT
63129737 G
1 G
63129738 GAATTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:63133708 original size:39 final size:40
Alignment explanation
Indices: 63133648--63133747 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 40
63133638 ACCCAAGTAT
* * * *
63133648 CTTCGGGAT-TTAGCCTGATATAGCCACTCGCA-CAAGGC
1 CTTCGGGATCTTAGCCGGATATAGCCACTAGCATAAAAGC
*
63133686 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGATCTTAG-CCGGATATAGCCACTAGCATAAAAGC
63133726 CTTCGGGA-CTTAGCCCGGATAT
1 CTTCGGGATCTTAG-CCGGATAT
63133748 CATTCGAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
37 4 0.08
38 8 0.15
39 16 0.31
40 21 0.40
41 3 0.06
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGATCTTAGCCGGATATAGCCACTAGCATAAAAGC
Found at i:63141918 original size:39 final size:40
Alignment explanation
Indices: 63141858--63141957 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 40
63141848 ACCCAAGTAT
* * * *
63141858 CTTCGGGAT-TTAGCCAGATATAGCCACTCGCA-CAAGGC
1 CTTCGGGATCTTAGCCGGATATAGCCACTAGCATAAAAGC
*
63141896 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGATCTTAG-CCGGATATAGCCACTAGCATAAAAGC
63141936 CTTCGGGA-CTTAGCCCGGATAT
1 CTTCGGGATCTTAG-CCGGATAT
63141958 CATTCGAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
37 4 0.08
38 8 0.15
39 16 0.31
40 21 0.40
41 3 0.06
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGATCTTAGCCGGATATAGCCACTAGCATAAAAGC
Found at i:63159830 original size:52 final size:52
Alignment explanation
Indices: 63159760--63159868 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
63159750 GTTGAAGAAT
63159760 TTTATGAGTATATATATATCATGACCAAATGTGTATATGCTTGGGAATTAAG
1 TTTATGAGTATATATATATCATGACCAAATGTGTATATGCTTGGGAATTAAG
* **
63159812 TTTATGAGTATTTATATATCATGACTGAATGTGTATATGCTTGGGAATTAAG
1 TTTATGAGTATATATATATCATGACCAAATGTGTATATGCTTGGGAATTAAG
63159864 TTTAT
1 TTTAT
63159869 AATTCGATTC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (52 bp):
TTTATGAGTATATATATATCATGACCAAATGTGTATATGCTTGGGAATTAAG
Found at i:63159971 original size:43 final size:42
Alignment explanation
Indices: 63159923--63160140 Score: 152
Period size: 45 Copynumber: 5.0 Consensus size: 42
63159913 CCGTAGGATT
* *
63159923 TCGATATGTGCTTTCGTGTAAGACCACATCTGGGACGTTGGCA
1 TCGATATGTG-TTTCATGTAAGACCACGTCTGGGACGTTGGCA
* *
63159966 TCGATATATGTGTTTTCTTGTAAGACCACGTCTGGGACATTGGCA
1 TCG--ATATGTG-TTTCATGTAAGACCACGTCTGGGACGTTGGCA
* * * ** * * *
63160011 TTGATATATGTGGTTACGTGTAAGACCATTTCTGGGACATCGGTA
1 TCG--ATATGT-GTTTCATGTAAGACCACGTCTGGGACGTTGGCA
* * * **
63160056 TTG-TATTTGATTCATGTAAGACCTTGTCTGGGACAG-TGGCA
1 TCGATATGTGTTTCATGTAAGACCACGTCTGGGAC-GTTGGCA
* ** *
63160097 TCGATATGAGATAGCATGTAAGACCACGTCTGAGACGTTGGCA
1 TCGATATGTG-TTTCATGTAAGACCACGTCTGGGACGTTGGCA
63160140 T
1 T
63160141 TGTTTGATAT
Statistics
Matches: 139, Mismatches: 29, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
41 26 0.19
42 9 0.06
43 28 0.20
45 75 0.54
46 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
TCGATATGTGTTTCATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:63159988 original size:45 final size:45
Alignment explanation
Indices: 63159926--63160050 Score: 169
Period size: 45 Copynumber: 2.8 Consensus size: 45
63159916 TAGGATTTCG
*
63159926 ATATGTGCTTTCGTGTAAGACCACATCTGGGACGTTGGCATCGAT
1 ATATGTGCTTTCGTGTAAGACCACATCTGGGACATTGGCATCGAT
* * * *
63159971 ATATGTGTTTTCTTGTAAGACCACGTCTGGGACATTGGCATTGAT
1 ATATGTGCTTTCGTGTAAGACCACATCTGGGACATTGGCATCGAT
* * **
63160016 ATATGTGGTTACGTGTAAGACCATTTCTGGGACAT
1 ATATGTGCTTTCGTGTAAGACCACATCTGGGACAT
63160051 CGGTATTGTA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (45 bp):
ATATGTGCTTTCGTGTAAGACCACATCTGGGACATTGGCATCGAT
Found at i:63162119 original size:43 final size:42
Alignment explanation
Indices: 63162071--63162218 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 42
63162061 CAATGGCGAC
*
63162071 GTCCCAGACATGGTCTTACATGTAATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAATTCAG-ATCGATGCCTAT
* * * **
63162114 GTCCCAAACAGGGTCTTATATG-AAAACAGATACGATG-CTGAT
1 GTCCCAGACATGGTCTTACATGTAATTCAGAT-CGATGCCT-AT
* * * * *
63162156 -TTCCAGACATGGTCTTACACGTAAATTTCAAATCGAGGCCTGT
1 GTCCCAGACATGGTCTTACATGT-AA-TTCAGATCGATGCCTAT
*
63162199 GTCCCAGACACGGTCTTACA
1 GTCCCAGACATGGTCTTACA
63162219 CGATATCTCA
Statistics
Matches: 80, Mismatches: 18, Indels: 13
0.72 0.16 0.12
Matches are distributed among these distances:
41 20 0.25
42 11 0.14
43 26 0.32
44 23 0.29
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGTAATTCAGATCGATGCCTAT
Found at i:63169342 original size:43 final size:42
Alignment explanation
Indices: 63169294--63169441 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 42
63169284 CAATGGCGAC
*
63169294 GTCCCAGACATGGTCTTACATGTAATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAATTCAG-ATCGATGCCTAT
* * * **
63169337 GTCCCAAACAGGGTCTTATATG-AAAACAGATACGATG-CTGAT
1 GTCCCAGACATGGTCTTACATGTAATTCAGAT-CGATGCCT-AT
** * * *
63169379 GT-CCAGACATGGTCTTACACATAAATTTCAAATCGAGGCCTGT
1 GTCCCAGACATGGTCTTACATGT-AA-TTCAGATCGATGCCTAT
*
63169422 GTCCCAGACACGGTCTTACA
1 GTCCCAGACATGGTCTTACA
63169442 CGATATCTCA
Statistics
Matches: 81, Mismatches: 17, Indels: 13
0.73 0.15 0.12
Matches are distributed among these distances:
41 18 0.22
42 13 0.16
43 28 0.35
44 22 0.27
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGTAATTCAGATCGATGCCTAT
Found at i:63181487 original size:37 final size:37
Alignment explanation
Indices: 63181437--63181515 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
63181427 TTATTACGAA
* *
63181437 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
63181474 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
63181511 GTCTT
1 GTCTT
63181516 TAGAGCTCGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:63181708 original size:49 final size:49
Alignment explanation
Indices: 63181636--63181985 Score: 575
Period size: 49 Copynumber: 7.2 Consensus size: 49
63181626 CTTCGGGACT
* * * * *
63181636 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
63181683 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
63181732 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
63181779 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
63181828 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
63181877 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
63181926 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
63181974 TATCACATATAT
1 TATCACATATAT
63181986 CGGCCATTAG
Statistics
Matches: 286, Mismatches: 13, Indels: 7
0.93 0.04 0.02
Matches are distributed among these distances:
47 53 0.19
48 15 0.05
49 218 0.76
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:63181990 original size:74 final size:75
Alignment explanation
Indices: 63181910--63182060 Score: 286
Period size: 74 Copynumber: 2.0 Consensus size: 75
63181900 CATTCATCAC
63181910 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
63181974 TATCACATAT
66 TATCACATAT
63181984 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
63182049 TATCAGATAT
66 TATCACATAT
63182059 AT
1 AT
63182061 ACACTTTCAC
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
74 64 0.85
75 11 0.15
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.30
Consensus pattern (75 bp):
ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
TATCACATAT
Done.