Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 195 of 316
Found at i:63181993 original size:25 final size:26
Alignment explanation
Indices: 63181959--63182011 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
63181949 CATTCATCAC
63181959 ATCGGCCATTAGG-CCTATCACATAT
1 ATCGGCCATTAGGCCCTATCACATAT
63181984 ATCGGCCATTAGGCCCTATCACATAT
1 ATCGGCCATTAGGCCCTATCACATAT
63182010 AT
1 AT
63182012 ATACACTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.48
26 14 0.52
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
ATCGGCCATTAGGCCCTATCACATAT
Found at i:63181998 original size:123 final size:122
Alignment explanation
Indices: 63181861--63182107 Score: 442
Period size: 123 Copynumber: 2.0 Consensus size: 122
63181851 CATTCATCAC
*
63181861 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
63181926 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATAT
66 TAT--CAGATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
63181984 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
63182049 TATCAGATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
66 TATCAGATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
63182106 AT
1 AT
63182108 ATACACTTTC
Statistics
Matches: 120, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
121 42 0.35
122 12 0.10
123 66 0.55
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (122 bp):
ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
TATCAGATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:63182039 original size:49 final size:49
Alignment explanation
Indices: 63181984--63182149 Score: 300
Period size: 49 Copynumber: 3.4 Consensus size: 49
63181974 TATCACATAT
*
63181984 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCAC
1 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
*
63182033 ATCGGCCATTAGGCCTTAT--CAGATATATACACTTTCACATTCATCAC
1 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
63182080 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
1 ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
63182129 ATCGGCCATTAGGCCTTATCA
1 ATCGGCCATTAGGCCTTATCA
63182150 TCATTTCATA
Statistics
Matches: 112, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
47 46 0.41
49 66 0.59
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (49 bp):
ATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
Found at i:63182118 original size:170 final size:172
Alignment explanation
Indices: 63181812--63182149 Score: 635
Period size: 170 Copynumber: 2.0 Consensus size: 172
63181802 CATTCATCAC
63181812 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
63181877 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
66 TAT-ACAGATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
63181942 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATAT
130 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
63181984 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
63182049 TAT-CAGATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
66 TATACAGATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACA
63182113 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
63182150 TCATTTCATA
Statistics
Matches: 163, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
170 90 0.55
171 5 0.03
172 68 0.42
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (172 bp):
ATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
TATACAGATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:63190197 original size:46 final size:46
Alignment explanation
Indices: 63190054--63190310 Score: 206
Period size: 46 Copynumber: 5.5 Consensus size: 46
63190044 TTTGTAGGCT
* *
63190054 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACAT-A-AGCC
* * * * * *
63190100 AGTGTAAGACGATGTCTAGAACATGACATCAGCAAT-GAGAC--GAGACT
1 AGTGTAAGAC-ATGTCTGGGACATG-CATCGGC-CTCGAGACATAAG-CC
*
63190147 AGTGTAAGACATGTCTGGGAGATGCATCGGCCTCGAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCC
* *
63190193 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGAT-AGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGA-CATAAGCC
* * * * *
63190239 AGTGTAAGACCATGTCTGAGACATGGCATC-GACTTGAGATATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACATAAGCC
*
63190286 AGTGTAAGACCATGTCGGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
63190311 GTGTCGGCAC
Statistics
Matches: 172, Mismatches: 24, Indels: 30
0.76 0.11 0.13
Matches are distributed among these distances:
44 1 0.01
45 13 0.08
46 73 0.42
47 70 0.41
48 13 0.08
49 1 0.01
50 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCC
Found at i:63190253 original size:93 final size:93
Alignment explanation
Indices: 63190047--63190310 Score: 279
Period size: 93 Copynumber: 2.8 Consensus size: 93
63190037 TCATTTGTTT
* *
63190047 GTAGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TCATGAGAGCCAGTGTAAGAC
1 GTAGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACAT-A-AGCCAGTGTAAGAC
* * *
63190110 GATGTCTAGAACATGACATCAGCAATGAGAC
64 -ATGTCTGGGACATGACATCAGCAACGAGAC
* *
63190141 G-AGACTAGTGTAAGACATGTCTGGGAGATGCATCGGCCTCGAGACATAAGCCAGTGTAAGACAT
1 GTAGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCCAGTGTAAGACAT
* * *
63190205 GTCTGGGACATG-CATCGGCTACGAGAT
66 GTCTGGGACATGACATCAGCAACGAGAC
* * * * *
63190232 GATAGGC-AGTGTAAGACCATGTCTGAGACATGGCATC-GACTTGAGATATGAGCCAGTGTAAGA
1 G-TAGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACATAAGCCAGTGTAAGA
*
63190295 CCATGTCGGGGACATG
63 -CATGTCTGGGACATG
63190311 GTGTCGGCAC
Statistics
Matches: 145, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
91 12 0.08
92 21 0.14
93 87 0.60
94 22 0.15
95 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (93 bp):
GTAGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCCAGTGTAAGACAT
GTCTGGGACATGACATCAGCAACGAGAC
Found at i:63190278 original size:47 final size:48
Alignment explanation
Indices: 63190054--63190311 Score: 184
Period size: 47 Copynumber: 5.5 Consensus size: 48
63190044 TTTGTAGGCT
* * *
63190054 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATCATGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGA-GAT-ATGAGCC
* * * * * * * *
63190100 AGTGTAAGACGATGTCTAGAACATGACATC-AGCAATGAG--ACGAGACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTACGAGATATGAG-CC
* * * *
63190147 AGTGTAAGA-CATGTCTGGGAGAT-GCATCGGCCT-CGAGACATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTACGAGATATGAGCC
* *
63190193 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGAT-AGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGAT-ATGAGCC
* *
63190239 AGTGTAAGACCATGTCTGAGACATGGCATCGACT-TGAGATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATATGAGCC
*
63190286 AGTGTAAGACCATGTCGGGGACATGG
1 AGTGTAAGACCATGTCTGGGACATGG
63190312 TGTCGGCACC
Statistics
Matches: 167, Mismatches: 30, Indels: 29
0.74 0.13 0.13
Matches are distributed among these distances:
45 11 0.07
46 70 0.42
47 71 0.43
48 14 0.08
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATATGAGCC
Found at i:63191150 original size:104 final size:104
Alignment explanation
Indices: 63190965--63191168 Score: 354
Period size: 104 Copynumber: 2.0 Consensus size: 104
63190955 GGTATGTAAG
*
63190965 ATGAAGCTTGGCAAATAGCCTTATATTGTCCACACGGGTAGTCACATGAGCATGTGTCTAGGCCG
1 ATGAAGCTTGGCAAATAGCCTTATATTGTCCACACGGGTAGTCACACGAGCATGTGTCTAGGCCG
63191030 TGTGTGACACACGGCCTGCCCCATGGGCTTGTGGTGACA
66 TGTGTGACACACGGCCTGCCCCATGGGCTTGTGGTGACA
* * * *
63191069 ATGACGCTTGGCAAATAGCCTTATATTGTCTACACGGGTAGTCACACGAGCGTGTGTCTAGGTCG
1 ATGAAGCTTGGCAAATAGCCTTATATTGTCCACACGGGTAGTCACACGAGCATGTGTCTAGGCCG
*
63191134 TGTGTGGCACACGGCCTGCCCCATGGGCTTGTGGT
66 TGTGTGACACACGGCCTGCCCCATGGGCTTGTGGT
63191169 TCGGCCATCT
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 94 1.00
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (104 bp):
ATGAAGCTTGGCAAATAGCCTTATATTGTCCACACGGGTAGTCACACGAGCATGTGTCTAGGCCG
TGTGTGACACACGGCCTGCCCCATGGGCTTGTGGTGACA
Found at i:63192843 original size:93 final size:93
Alignment explanation
Indices: 63192735--63192905 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
63192725 GCCCCTAAGT
*
63192735 GAACTCGAACTCAACTCAACGAGCTCTGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63192799 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
63192828 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63192893 CGAGTTCGGATGC
66 CGAGTTCGGATGC
63192906 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63192900 original size:46 final size:45
Alignment explanation
Indices: 63192732--63192902 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 45
63192722 CCCGCCCCTA
* * *
63192732 AGTGAACTCGAACTCAACTCAACGAGCTCTGG-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCAT
*
63192777 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
*
63192825 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
63192870 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
63192903 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 56 0.53
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:63197947 original size:6 final size:6
Alignment explanation
Indices: 63197936--63197974 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
63197926 AACAGAAAGT
*
63197936 TAAAAA TAAAAA TAAAAA TAAAGA TAAAAA T-AAAA TAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAA
63197975 TGAGATGAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:63197957 original size:18 final size:17
Alignment explanation
Indices: 63197912--63197974 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 17
63197902 AAAGAAGTTT
63197912 AATAAAAT-AAAATAAA
1 AATAAAATAAAAATAAA
* * *
63197928 CAGAAAGTTAAAAATAAA
1 AATAAA-ATAAAAATAAA
*
63197946 AATAAAAATAAAGATAAA
1 AAT-AAAATAAAAATAAA
63197964 AATAAAATAAA
1 AATAAAATAAA
63197975 TGAGATGAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
16 4 0.11
17 9 0.24
18 21 0.57
19 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (17 bp):
AATAAAATAAAAATAAA
Found at i:63197958 original size:24 final size:23
Alignment explanation
Indices: 63197915--63197974 Score: 84
Period size: 24 Copynumber: 2.6 Consensus size: 23
63197905 GAAGTTTAAT
* *
63197915 AAAATAAAATAAACAGAAAGTTA
1 AAAATAAAATAAAAAGAAAGATA
*
63197938 AAAATAAAAATAAAAATAAAGATA
1 AAAAT-AAAATAAAAAGAAAGATA
63197962 AAAATAAAATAAA
1 AAAATAAAATAAA
63197975 TGAGATGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 13 0.39
24 20 0.61
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.17
Consensus pattern (23 bp):
AAAATAAAATAAAAAGAAAGATA
Found at i:63199502 original size:126 final size:126
Alignment explanation
Indices: 63199360--63199646 Score: 418
Period size: 126 Copynumber: 2.3 Consensus size: 126
63199350 CCGTGTCCTT
*
63199360 CACACGG-CTAAGACACACAG-CCGTGTCTCTGCCCGTA-TGTTTACTACTGGGCATTCTGTTTT
1 CACACGGCCT-AGACACAC-GTCCGTGTCTCTGCCCG-AGTGTTTACTACTGGGCATTCTATTTT
* * * * *
63199422 GCATTAATTAGGGTGCAGGGGACACATGGCTAGACCACACGCCCATGGGGTAGACCGTGTGTCA
63 GCATTAATTAGGGTGCAGGGGACACACGACCAGACCACACGCCCATGGGGTAAACCATGTGTCA
* *
63199486 CACATGGCCTAGACACACGTCCGTGTGTCTGCCCGAGTGTTTACTACTGGGCATTCTATTTTGCA
1 CACACGGCCTAGACACACGTCCGTGTCTCTGCCCGAGTGTTTACTACTGGGCATTCTATTTTGCA
*
63199551 TTAATTAGGGTGCAGGGGACACACGACCGGACCACACGCCCATGGGGTAAACCATGTGTCA
66 TTAATTAGGGTGCAGGGGACACACGACCAGACCACACGCCCATGGGGTAAACCATGTGTCA
* * *
63199612 CACACGGCCTAGACACACGTCTGTGTGTCTACCCG
1 CACACGGCCTAGACACACGTCCGTGTCTCTGCCCG
63199647 TGTGACAACT
Statistics
Matches: 146, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
125 2 0.01
126 142 0.97
127 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (126 bp):
CACACGGCCTAGACACACGTCCGTGTCTCTGCCCGAGTGTTTACTACTGGGCATTCTATTTTGCA
TTAATTAGGGTGCAGGGGACACACGACCAGACCACACGCCCATGGGGTAAACCATGTGTCA
Found at i:63205177 original size:40 final size:40
Alignment explanation
Indices: 63205140--63205364 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
63205130 GCTACTCGTT
* *
63205140 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
63205180 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
63205220 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
63205260 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
63205299 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
63205340 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
63205365 CATCATTCAA
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 118 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:63205324 original size:119 final size:120
Alignment explanation
Indices: 63205142--63205364 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
63205132 TACTCGTTCA
*
63205142 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
63205207 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
63205262 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
63205324 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
63205365 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:63220604 original size:47 final size:47
Alignment explanation
Indices: 63220459--63220884 Score: 656
Period size: 47 Copynumber: 9.1 Consensus size: 47
63220449 CCCTTCGGGA
* * * * * * *
63220459 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63220506 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63220552 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63220599 CTTATCACCTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63220646 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63220693 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63220740 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63220787 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63220834 CTTATCACACATATACACTTTCACATTCATCACGTCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63220881 CTTA
1 CTTA
63220885 CTATCATTTC
Statistics
Matches: 356, Mismatches: 22, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 40 0.11
47 316 0.89
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63224286 original size:40 final size:38
Alignment explanation
Indices: 63224233--63224371 Score: 125
Period size: 40 Copynumber: 3.5 Consensus size: 38
63224223 CATGATTGCT
* * *
63224233 CTTCGGGATTTAGCACGGATATATCACTAGCACGAATGC
1 CTTCGGAACTTAGCCCGGATATATCACTAGCAC-AATGC
* * *
63224272 TCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACCAATGC
1 -CTTCGGAACTTAGCCCGGATATA-TCACTAGCA-CAATGC
* * * *
63224313 CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGAACTTAGCCCGGATAT-ATCAC-TAGCACAATGC
*
63224353 CTTCGGGACTTAGCCCGGA
1 CTTCGGAACTTAGCCCGGA
63224372 CATCATTCAA
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
40 62 0.78
41 16 0.20
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (38 bp):
CTTCGGAACTTAGCCCGGATATATCACTAGCACAATGC
Found at i:63224714 original size:29 final size:29
Alignment explanation
Indices: 63224675--63224753 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
63224665 CTTAATAATC
*
63224675 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
63224705 AACTCGCACAATTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
63224734 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
63224754 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:63224783 original size:43 final size:43
Alignment explanation
Indices: 63224735--63224837 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
63224725 TGCATTTCAA
63224735 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
63224778 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
63224821 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
63224838 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:63226996 original size:47 final size:47
Alignment explanation
Indices: 63226851--63227276 Score: 656
Period size: 47 Copynumber: 9.1 Consensus size: 47
63226841 CCCTTCGGGA
* * * * * * *
63226851 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63226898 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63226944 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63226991 CTTATCACCTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63227038 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63227085 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63227132 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63227179 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63227226 CTTATCACACATATACACTTTCACATTCATCACGTCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63227273 CTTA
1 CTTA
63227277 CTATCATTTC
Statistics
Matches: 356, Mismatches: 22, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 40 0.11
47 316 0.89
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63229785 original size:6 final size:6
Alignment explanation
Indices: 63229749--63229809 Score: 54
Period size: 6 Copynumber: 10.0 Consensus size: 6
63229739 TTTGAGTCCA
* *
63229749 TTTATTT TTTATCT TTTATT TTT-TGC CTTATT TTTATT TTTATT TTTA-T
1 TTTA-TT TTTAT-T TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT
*
63229798 TTTATG TTTATT
1 TTTATT TTTATT
63229810 CTAAAGACTT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
5 6 0.14
6 27 0.61
7 11 0.25
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:63229794 original size:11 final size:11
Alignment explanation
Indices: 63229776--63229809 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
63229766 ATTTTTTGCC
63229776 TTATTTTTATTT
1 TTATTTTTA-TT
63229788 TTATTTTTATT
1 TTATTTTTATT
*
63229799 TTATGTTTATT
1 TTATTTTTATT
63229810 CTAAAGACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:63236459 original size:27 final size:27
Alignment explanation
Indices: 63236423--63236679 Score: 266
Period size: 27 Copynumber: 9.5 Consensus size: 27
63236413 GCCGAAATGG
63236423 TGACCGAAATACCCCTATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
** * *
63236450 TGATTGAAATACCCCCATAGAGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
*
63236477 TGACCGAAATATCCCTATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* *
63236504 TGACCGAAATACCCCGATAGGGAAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* * *
63236531 CGACCAAAATA-CCCTCACAGGGTAAAA
1 TGACCGAAATACCCCT-ATAGGGTAAAA
* *
63236558 TGACCAAAATACCCCCT-TAAGGTAAAA
1 TGACCGAAATA-CCCCTATAGGGTAAAA
* * * * *
63236585 TAACCAAAATATCTCTATAAGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* *
63236612 TGACTGTAATACCCCTATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* * *
63236639 TGACTGTAATACCCCTTTAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* *
63236666 TGACTGTAATACCC
1 TGACCGAAATACCC
63236680 TTGTAAGGTA
Statistics
Matches: 195, Mismatches: 31, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
26 6 0.03
27 185 0.95
29 4 0.02
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (27 bp):
TGACCGAAATACCCCTATAGGGTAAAA
Found at i:63236692 original size:26 final size:26
Alignment explanation
Indices: 63236602--63236691 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 26
63236592 AATATCTCTA
*
63236602 TAAGGTAAAATGACTGTAATACCCCTA
1 TAAGGTAAAATGACTGTAATA-CCCTT
*
63236629 TAGGGTAAAATGACTGTAATACCCCTT
1 TAAGGTAAAATGACTGTAATA-CCCTT
*
63236656 TAGGGTAAAATGACTGTAATACCCTT
1 TAAGGTAAAATGACTGTAATACCCTT
63236682 GTAAGGTAAA
1 -TAAGGTAAA
63236692 TTGATTGATT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
26 5 0.08
27 54 0.92
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (26 bp):
TAAGGTAAAATGACTGTAATACCCTT
Found at i:63241855 original size:12 final size:14
Alignment explanation
Indices: 63241840--63241871 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
63241830 GTGAGAACAC
63241840 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
63241852 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
63241866 ATGTGT
1 ATGTGT
63241872 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:63241956 original size:50 final size:50
Alignment explanation
Indices: 63241883--63242167 Score: 270
Period size: 50 Copynumber: 5.7 Consensus size: 50
63241873 TAAGATGGTT
63241883 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAG
* * * * * * * *
63241933 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACCATGCGTACCCGAAAA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAG
* * * * * * * *
63241983 CTA-ATCACGTGTGTAGTACTAAATGTAGGCTACTATGCGTACCTGAAAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTG-ATAG
* * * * * * *
63242033 TTCGATCACGTGTGTAGTACTAAGTGTAGGTTATTACGTGTA-TTAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCT-GATAG
* * *
63242083 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAG
* * *
63242133 -TAGGTCGCATATGTAGTACTAAGTGCAGGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
63242168 TGCATACCAG
Statistics
Matches: 191, Mismatches: 40, Indels: 9
0.80 0.17 0.04
Matches are distributed among these distances:
49 67 0.35
50 90 0.47
51 34 0.18
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAG
Found at i:63242015 original size:49 final size:51
Alignment explanation
Indices: 63241943--63242062 Score: 181
Period size: 49 Copynumber: 2.4 Consensus size: 51
63241933 TTAGGTCGCA
*
63241943 TGTGTAGTACTAAGTGCAGGCTACCATGCGTACCCGAAAAC-T-AATCACG
1 TGTGTAGTACTAAGTGTAGGCTACCATGCGTACCCGAAAACTTCAATCACG
* * * *
63241992 TGTGTAGTACTAAATGTAGGCTACTATGCGTACCTGAAAACTTCGATCACG
1 TGTGTAGTACTAAGTGTAGGCTACCATGCGTACCCGAAAACTTCAATCACG
63242043 TGTGTAGTACTAAGTGTAGG
1 TGTGTAGTACTAAGTGTAGG
63242063 TTATTACGTG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
49 37 0.59
50 1 0.02
51 25 0.40
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGTAGGCTACCATGCGTACCCGAAAACTTCAATCACG
Found at i:63242148 original size:150 final size:149
Alignment explanation
Indices: 63241888--63242175 Score: 348
Period size: 150 Copynumber: 1.9 Consensus size: 149
63241878 TGGTTTTAGG
*
63241888 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAGTTAGGTCACATGTGTAGTAC
* * * *
63241953 TAAGTGCAGGCTACCATGCGTACCCGAAAACTAATCACGTGTGTAGTACTAAATGTAGGCTACTA
66 TAAGTGCAGGCTACCAT-CGTACCAGAAAACTAATCACATATGTAGTACTAAATGCAGGCTACTA
*
63242018 TGCGTACCTGAAAACTTCGA
130 TGCATACCTGAAAACTTCGA
* * * * * *
63242038 TCACGTGTGTAGTACTAAGTGTAGGTTATTACGTGTA-TTAGATGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCT-GATAGTTAGGTCACATGTGTAGTA
*** * * *
63242102 CTAAGTGCAGGCTACTACAT-GTACCAG-ATTGTAGGTCGCATATGTAGTACTAAGTGCAGGCTA
65 CTAAGTGCAGGCTAC--CATCGTACCAGAAAACTA-ATCACATATGTAGTACTAAATGCAGGCTA
63242165 CTATGCATACC
127 CTATGCATACC
63242176 AGATAGCTTC
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
149 4 0.03
150 109 0.94
152 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (149 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACCATCGTACCAGAAAACTAATCACATATGTAGTACTAAATGCAGGCTACTAT
GCATACCTGAAAACTTCGA
Found at i:63242156 original size:49 final size:50
Alignment explanation
Indices: 63241837--63242167 Score: 175
Period size: 50 Copynumber: 6.6 Consensus size: 50
63241827 ATTGTGAGAA
* * * ** ***
63241837 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATATGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGG--TTAGGT
* * * * *
63241889 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAGTTAGGT
1 CACATATGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGT
* * * **** *
63241939 CGCATGTGTAGTACTAAGTGCAGGCTAC--CATGCGTACCCGAAAACTA-AT
1 CACATATGTAGTACTAAGTGCAGGCTACTACAT--GTACCAGATGGTTAGGT
* * * * *** * *** * *
63241988 CACGTGTGTAGTACTAAATGTAGGCTACTATGCGTACCTGAAAACTTCGAT
1 CACATATGTAGTACTAAGTGCAGGCTACTACATGTACCAG-ATGGTTAGGT
* * * * * * **
63242039 CACGTGTGTAGTACTAAGTGTAGGTTATTACGTGTATTAGATGGTTAGGT
1 CACATATGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGT
* * *
63242089 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG-TAGGT
1 CACATATGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGT
*
63242138 CGCATATGTAGTACTAAGTGCAGGCTACTA
1 CACATATGTAGTACTAAGTGCAGGCTACTA
63242168 TGCATACCAG
Statistics
Matches: 222, Mismatches: 51, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
48 2 0.01
49 63 0.28
50 88 0.40
51 34 0.15
52 35 0.16
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATATGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGT
Found at i:63242400 original size:16 final size:15
Alignment explanation
Indices: 63242379--63242408 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
63242369 GAATGGAGTA
63242379 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
63242395 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
63242409 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:63248023 original size:40 final size:40
Alignment explanation
Indices: 63247978--63248245 Score: 455
Period size: 40 Copynumber: 6.7 Consensus size: 40
63247968 GCAAACACAT
*
63247978 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63248018 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
63248058 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
63248098 TTGCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63248138 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63248178 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63248218 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
63248246 TCCAATGCTC
Statistics
Matches: 218, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:63260775 original size:27 final size:27
Alignment explanation
Indices: 63260745--63260830 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
63260735 AGTTCATATG
63260745 TAAATGTTGGTAACATAGTTATTATTT
1 TAAATGTTGGTAACATAGTTATTATTT
* * *
63260772 TAAATATCAAGGT---A-AGTTCA-TA-TG
1 TAAATGT--TGGTAACATAGTT-ATTATTT
63260796 TAAATGTTGGTAACATAGTTATTATTT
1 TAAATGTTGGTAACATAGTTATTATTT
63260823 TAAATGTT
1 TAAATGTT
63260831 TTAATGTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 18
0.65 0.09 0.26
Matches are distributed among these distances:
22 3 0.07
24 7 0.16
25 8 0.18
26 8 0.18
27 15 0.34
29 3 0.07
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.44
Consensus pattern (27 bp):
TAAATGTTGGTAACATAGTTATTATTT
Found at i:63260783 original size:51 final size:51
Alignment explanation
Indices: 63260728--63260827 Score: 200
Period size: 51 Copynumber: 2.0 Consensus size: 51
63260718 TTTTCGCATA
63260728 CAAGGTAAGTTCATATGTAAATGTTGGTAACATAGTTATTATTTTAAATAT
1 CAAGGTAAGTTCATATGTAAATGTTGGTAACATAGTTATTATTTTAAATAT
63260779 CAAGGTAAGTTCATATGTAAATGTTGGTAACATAGTTATTATTTTAAAT
1 CAAGGTAAGTTCATATGTAAATGTTGGTAACATAGTTATTATTTTAAAT
63260828 GTTTTAATGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.37, C:0.06, G:0.16, T:0.41
Consensus pattern (51 bp):
CAAGGTAAGTTCATATGTAAATGTTGGTAACATAGTTATTATTTTAAATAT
Found at i:63261114 original size:46 final size:46
Alignment explanation
Indices: 63261061--63261234 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 46
63261051 TTGGGCATCT
*
63261061 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* *** * * ** *
63261107 GAACTCGTTAAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACGTCC
* * *
63261154 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
*
63261199 TGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
63261235 CGGTTTACAT
Statistics
Matches: 101, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
45 2 0.02
46 65 0.64
47 34 0.34
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
Found at i:63261214 original size:93 final size:93
Alignment explanation
Indices: 63261054--63261225 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
63261044 AGGATATTTG
* * *
63261054 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTAAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGTCCGAACTCGTTAAG
63261119 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
63261147 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGTCC-GAACTCGTTAA
63261211 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
63261226 ACTTATGGAC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGTCCGAACTCGTTAAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:63261828 original size:33 final size:33
Alignment explanation
Indices: 63261786--63261849 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
63261776 TATCCATTGG
63261786 AATGGCTAATCATGATCATATTTGGTGTTATCC
1 AATGGCTAATCATGATCATATTTGGTGTTATCC
63261819 AATGGCTAATCATGATCATATTTGGTGTTAT
1 AATGGCTAATCATGATCATATTTGGTGTTAT
63261850 GTATGCTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (33 bp):
AATGGCTAATCATGATCATATTTGGTGTTATCC
Found at i:63264490 original size:45 final size:45
Alignment explanation
Indices: 63264339--63264505 Score: 146
Period size: 45 Copynumber: 3.6 Consensus size: 45
63264329 TATGAGAGCC
* *
63264339 AGTGTAAGACCATGTCTGGGACATGGTATCGGCATTGA-GACGA-GTGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC--T-ACGA-GATGTGTT
* ** * * *
63264387 AGTGTAAGACATGTCTGGGACAT-ACATCACCT-CGGGATGTAATCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCTACGAGATGT-GT-T
*
63264432 AGTATAAGACATGTCTGGGACAT-GCATCGGCTACGAGATGTGTT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCTACGAGATGTGTT
63264476 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACATGGCATC
63264506 AAAATTTACC
Statistics
Matches: 96, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 9 0.09
45 43 0.45
46 16 0.17
47 14 0.15
48 9 0.09
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCTACGAGATGTGTT
Found at i:63284463 original size:24 final size:25
Alignment explanation
Indices: 63284405--63284463 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
63284395 GGAGGAAGTG
*
63284405 CAAAAG-GGCTTTGCCCCAGTTAAT
1 CAAAAGAGGCTTTGCCCCAATTAAT
63284429 CAAAA-AGGGCTTTGCCCCAATT-AT
1 CAAAAGA-GGCTTTGCCCCAATTAAT
*
63284453 TAAAAGAGGCT
1 CAAAAGAGGCT
63284464 AGGCCTCGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 15 0.50
25 15 0.50
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAATTAAT
Found at i:63288353 original size:13 final size:13
Alignment explanation
Indices: 63288335--63288368 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
63288325 GGACATGGCC
63288335 GTGTGGGCAGGCT
1 GTGTGGGCAGGCT
63288348 GTGTGGGGGCAGGCT
1 GTGT--GGGCAGGCT
63288363 GTGTGG
1 GTGTGG
63288369 TCACACACGC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.32
15 13 0.68
ACGTcount: A:0.06, C:0.12, G:0.59, T:0.24
Consensus pattern (13 bp):
GTGTGGGCAGGCT
Found at i:63288357 original size:15 final size:15
Alignment explanation
Indices: 63288339--63288368 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63288329 ATGGCCGTGT
63288339 GGGCAGGCTGTGTGG
1 GGGCAGGCTGTGTGG
63288354 GGGCAGGCTGTGTGG
1 GGGCAGGCTGTGTGG
63288369 TCACACACGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.60, T:0.20
Consensus pattern (15 bp):
GGGCAGGCTGTGTGG
Found at i:63288900 original size:15 final size:17
Alignment explanation
Indices: 63288882--63288913 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
63288872 TAGAATAATT
63288882 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
63288897 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
63288914 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:63290359 original size:53 final size:53
Alignment explanation
Indices: 63290279--63290383 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 53
63290269 TTCCTTTTTA
* * *
63290279 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
63290332 AACTCACCATTGTCATG-CTTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGTC-TTGACATGGTCTTACATGGGATCCTTGCCTTAT
63290384 CGTAGTTTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.02
53 44 0.98
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:63297612 original size:53 final size:55
Alignment explanation
Indices: 63297522--63297661 Score: 162
Period size: 55 Copynumber: 2.6 Consensus size: 55
63297512 TTTTAAACAT
* *
63297522 ACCATTTCCATGTCTTGACATGTCTTACGTG-GTATCTTTGCCTTA-TG-AATTC
1 ACCATTGCCATGTCTTGACATGTCTTACATGAGTATCTTTGCCTTATTGTAATTC
* * * *
63297574 ACCATTGCCATGCCTTGGCATGCTCTTACATGAG-ATCTTTGCCTTATTGTAGTTT
1 ACCATTGCCATGTCTTGACATG-TCTTACATGAGTATCTTTGCCTTATTGTAATTC
* *
63297629 ATCAATGCCATGTCTTGACATGGTCTTACATGA
1 ACCATTGCCATGTCTTGACAT-GTCTTACATGA
63297662 TTTCCTTCCC
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
52 19 0.26
53 20 0.27
54 3 0.04
55 30 0.41
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (55 bp):
ACCATTGCCATGTCTTGACATGTCTTACATGAGTATCTTTGCCTTATTGTAATTC
Found at i:63297657 original size:55 final size:54
Alignment explanation
Indices: 63297529--63297719 Score: 160
Period size: 55 Copynumber: 3.6 Consensus size: 54
63297519 CATACCATTT
* *
63297529 CCATGTCTTGACAT-GTCTTACGTG-GTATCTTTGCCTTATGAATTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGAGTATCTTTGCCTTATGAATTCACCAATG
* * * * * *
63297581 CCATGCCTTGGCATGCTCTTACATGAG-ATCTTTGCCTTATTGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGAGTATCTTTGCCTTA-TG-AATTCACCAATG
* * * * *
63297636 CCATGTCTTGACATGGTCTTACATGA-TTTCCTTCCCTTGTAAAACTT-ACCAATG
1 CCATGTCTTGACATGGTCTTACATGAGTATCTTTGCCTTAT-GAA-TTCACCAATG
* * *
63297690 CCATGTCTTGGCACGGTCTTACTTG-GTATC
1 CCATGTCTTGACATGGTCTTACATGAGTATC
63297720 CTTAAACCCT
Statistics
Matches: 109, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
52 12 0.11
53 20 0.18
54 36 0.33
55 41 0.38
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (54 bp):
CCATGTCTTGACATGGTCTTACATGAGTATCTTTGCCTTATGAATTCACCAATG
Found at i:63301287 original size:20 final size:20
Alignment explanation
Indices: 63301262--63301308 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
63301252 AAGACGTAAA
63301262 TTTTCATCAAAATTTATAAC
1 TTTTCATCAAAATTTATAAC
63301282 TTTTCATCAAAATTTATAAC
1 TTTTCATCAAAATTTATAAC
63301302 TTTTCAT
1 TTTTCAT
63301309 AAACGTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTCATCAAAATTTATAAC
Found at i:63302658 original size:42 final size:42
Alignment explanation
Indices: 63302611--63302722 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 42
63302601 TACCATACCA
* *
63302611 ATGCCATATCCCAAATATGGTCTTACATAGGAT-CTCGTATCG
1 ATGCCATATCCCAAATATGGTCTTACAT-GAATCCTCATATCG
* **
63302653 ATGCCAATAGCCCAGCTATGGTCTTACATGAATCCTCATATCG
1 ATGCC-ATATCCCAAATATGGTCTTACATGAATCCTCATATCG
*
63302696 ATGCCATATCCAAAATATGGTCTTACA
1 ATGCCATATCCCAAATATGGTCTTACA
63302723 CATAATCTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 26 0.44
43 33 0.56
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACATGAATCCTCATATCG
Found at i:63308025 original size:21 final size:22
Alignment explanation
Indices: 63307973--63308025 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
63307963 AAATAAAGTC
*
63307973 CATGTA-CAAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
63307994 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
63308016 CATGTATCAT
1 CATGTATCAT
63308026 CATTTACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:63316677 original size:22 final size:22
Alignment explanation
Indices: 63316652--63316742 Score: 94
Period size: 22 Copynumber: 4.1 Consensus size: 22
63316642 CTCCTTCGGA
63316652 CTGAAAAGTAAGCTCTATTGAG
1 CTGAAAAGTAAGCTCTATTGAG
**
63316674 CTGAATGGTAAGCTCTATTGAG
1 CTGAAAAGTAAGCTCTATTGAG
** * *
63316696 CTGAACGGTAAGCTCCAATGAG
1 CTGAAAAGTAAGCTCTATTGAG
*
63316718 TTGAAATAGTAAGCTCT-TATGAG
1 CTGAAA-AGTAAGCTCTAT-TGAG
63316741 CT
1 CT
63316743 ATGGTGAGTC
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
22 43 0.77
23 13 0.23
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (22 bp):
CTGAAAAGTAAGCTCTATTGAG
Found at i:63316700 original size:44 final size:45
Alignment explanation
Indices: 63316652--63316742 Score: 105
Period size: 44 Copynumber: 2.0 Consensus size: 45
63316642 CTCCTTCGGA
* * *
63316652 CTGAAAAGTAAGCTCTATTGAGCTG-AATGGTAAGCTC-TATTGAG
1 CTGAAAAGTAAGCTCCAATGAGCTGAAATAGTAAGCTCTTA-TGAG
** *
63316696 CTGAACGGTAAGCTCCAATGAGTTGAAATAGTAAGCTCTTATGAG
1 CTGAAAAGTAAGCTCCAATGAGCTGAAATAGTAAGCTCTTATGAG
63316741 CT
1 CT
63316743 ATGGTGAGTC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
44 20 0.51
45 17 0.44
46 2 0.05
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (45 bp):
CTGAAAAGTAAGCTCCAATGAGCTGAAATAGTAAGCTCTTATGAG
Found at i:63325915 original size:40 final size:40
Alignment explanation
Indices: 63325856--63326123 Score: 446
Period size: 40 Copynumber: 6.7 Consensus size: 40
63325846 GAGCATTGGA
* *
63325856 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
63325896 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
* *
63325936 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
* *
63325976 ATATATCCTGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
63326016 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
63326056 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
63326096 ATATGTCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
63326124 ATGTGTTTGC
Statistics
Matches: 216, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 216 1.00
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
Found at i:63339591 original size:28 final size:24
Alignment explanation
Indices: 63339559--63339622 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 24
63339549 GTGAATCAAA
63339559 TGAAAATATCAGCTAATATGAATTCCAT
1 TGAAAAT-TCAGCT-AT-T-AATTCCAT
*
63339587 TG-AAATTCGGCTATTAATTCCAT
1 TGAAAATTCAGCTATTAATTCCAT
*
63339610 TG-AAATTCGGCTA
1 TGAAAATTCAGCTA
63339623 CCTTGGGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
23 21 0.60
24 1 0.03
25 2 0.06
26 5 0.14
27 4 0.11
28 2 0.06
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (24 bp):
TGAAAATTCAGCTATTAATTCCAT
Found at i:63339605 original size:23 final size:23
Alignment explanation
Indices: 63339579--63339622 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
63339569 AGCTAATATG
63339579 AATTCCATTGAAATTCGGCTATT
1 AATTCCATTGAAATTCGGCTATT
63339602 AATTCCATTGAAATTCGGCTA
1 AATTCCATTGAAATTCGGCTA
63339623 CCTTGGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (23 bp):
AATTCCATTGAAATTCGGCTATT
Found at i:63340284 original size:22 final size:21
Alignment explanation
Indices: 63340259--63340305 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
63340249 ATCTTAACTA
63340259 AATTCAT-TTACTTTTCTATCTC
1 AATTCATATT-CTTTTCTA-CTC
*
63340281 AATTCATATTTTTTTCTACTC
1 AATTCATATTCTTTTCTACTC
63340302 AATT
1 AATT
63340306 TTCAACCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 14 0.61
23 2 0.09
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTCATATTCTTTTCTACTC
Found at i:63340709 original size:13 final size:14
Alignment explanation
Indices: 63340691--63340720 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
63340681 TGTTTCTTTC
63340691 TTTCTTTTT-TTTG
1 TTTCTTTTTATTTG
63340704 TTTCTTTTTATTTG
1 TTTCTTTTTATTTG
63340718 TTT
1 TTT
63340721 TATTATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.03, C:0.07, G:0.07, T:0.83
Consensus pattern (14 bp):
TTTCTTTTTATTTG
Found at i:63340875 original size:13 final size:13
Alignment explanation
Indices: 63340849--63340885 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
63340839 AATTGTCACA
63340849 ATTTAATTAATTT
1 ATTTAATTAATTT
* *
63340862 ATTTATTTACTTT
1 ATTTAATTAATTT
63340875 ATTTAATTAAT
1 ATTTAATTAAT
63340886 ATAAAATAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTAATTAATTT
Found at i:63340907 original size:14 final size:15
Alignment explanation
Indices: 63340880--63340925 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
63340870 ACTTTATTTA
63340880 ATTAATATAAAATAAT
1 ATTAATAT-AAATAAT
63340896 ATTAATAT-AATAAT
1 ATTAATATAAATAAT
*
63340910 ATTTACT-TAAATAAT
1 A-TTAATATAAATAAT
63340925 A
1 A
63340926 AGTAAACAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 8 0.30
15 11 0.41
16 8 0.30
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTAATATAAATAAT
Found at i:63347253 original size:40 final size:41
Alignment explanation
Indices: 63347118--63347303 Score: 261
Period size: 41 Copynumber: 4.6 Consensus size: 41
63347108 TACTCGAATG
*
63347118 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
*
63347159 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
63347200 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
63347240 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
63347280 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
63347304 CTTGTGCGAG
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.47
41 69 0.52
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:63347260 original size:81 final size:82
Alignment explanation
Indices: 63347120--63347273 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 82
63347110 CTCGAATGAT
* * *
63347120 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
63347185 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
63347202 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
63347265 TTTATGCTA
65 TTTATGCTA
63347274 GTGACCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 39 0.58
82 27 0.40
83 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:63355130 original size:39 final size:41
Alignment explanation
Indices: 63355035--63355218 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 41
63355025 TTGAATGCTG
*
63355035 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
* * *
63355074 TCCGGACTAAGAT-CCGAAGACATTTGTGCGAGGTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAGTACTAATA
63355114 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* * *
63355153 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
63355193 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63355219 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
38 1 0.01
39 49 0.40
40 58 0.48
41 13 0.11
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:63355241 original size:79 final size:79
Alignment explanation
Indices: 63355087--63355251 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
63355077 GGACTAAGAT
* * * ** *
63355087 CCGAAGACATTTGTGCGAGGTACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAAGTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
63355152 ATCCGAGTTAAGTC
66 ATCCGAGTTAAATC
* *
63355166 CCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAAGTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
63355229 TATATCCG-GTTAAATT
63 TAAATCCGAGTTAAATC
63355245 CCGAAGG
1 CCGAAGG
63355252 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 44 0.61
80 26 0.36
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAAGTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGAGTTAAATC
Found at i:63356672 original size:41 final size:41
Alignment explanation
Indices: 63356585--63356730 Score: 242
Period size: 41 Copynumber: 3.6 Consensus size: 41
63356575 TAGCGTAAAT
*
63356585 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
63356625 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
63356666 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
63356707 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
63356731 CATTCGAGTA
Statistics
Matches: 98, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
39 3 0.03
40 24 0.24
41 68 0.69
42 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:63364658 original size:79 final size:82
Alignment explanation
Indices: 63364547--63364730 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
63364537 GCTCCTCGTT
* * *
63364547 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
63364610 GGAT-TTAGTAAC-TCGCA
65 GGATATT-GTAACTTAGCA
* **
63364627 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTACCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
63364690 GATATTGTCACTTAGCA
66 GATATTGTAACTTAGCA
63364707 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63364731 CAGCATTCAA
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 12 0.13
79 57 0.63
80 22 0.24
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATTGTAACTTAGCA
Found at i:63364664 original size:39 final size:40
Alignment explanation
Indices: 63364547--63364730 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
63364537 GCTCCTCGTT
* * *
63364547 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
63364587 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
63364627 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTACCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
63364666 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
63364707 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63364731 CAGCATTCAA
Statistics
Matches: 127, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.02
39 49 0.39
40 66 0.52
41 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:63371755 original size:18 final size:19
Alignment explanation
Indices: 63371714--63371755 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
63371704 CCCATGTGCC
63371714 CTGCCCGTGTGGGCCCACA
1 CTGCCCGTGTGGGCCCACA
*
63371733 C-GCCCGTGT-GGCTCACA
1 CTGCCCGTGTGGGCCCACA
63371750 CTGCCC
1 CTGCCC
63371756 AAATTGGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 8 0.38
18 12 0.57
19 1 0.05
ACGTcount: A:0.10, C:0.45, G:0.29, T:0.17
Consensus pattern (19 bp):
CTGCCCGTGTGGGCCCACA
Found at i:63382145 original size:46 final size:46
Alignment explanation
Indices: 63382034--63382239 Score: 143
Period size: 46 Copynumber: 4.5 Consensus size: 46
63382024 TAATGCCATG
* * *
63382034 TCCCAGACATGGTCTTACACTGAC--ACATCTCGTA-GCCAATGCATG
1 TCCCAGACAT-GTCTTACACTAACTTACATCTCG-AGGCCGATGCATA
** * * *
63382079 TCTAAGACATATCGTGCACTAACTTACATCTCGAGGCCGATGCATA
1 TCCCAGACATGTCTTACACTAACTTACATCTCGAGGCCGATGCATA
* *** * * * *
63382125 TCCCAGACATGTCTTACACTAGCACCCATCTCAATGACGATGCCATG
1 TCCCAGACATGTCTTACACTAACTTACATCTCGAGGCCGATG-CATA
* * *
63382172 TCCCAGACATGGTCTTACACTAGCTCTCACA-AT-GTGGCCGATGCATA
1 TCCCAGACAT-GTCTTACACTAACT-T-ACATCTCGAGGCCGATGCATA
*
63382219 TCCTAGACATGTCTTACACTA
1 TCCCAGACATGTCTTACACTA
63382240 GCCCACAATA
Statistics
Matches: 123, Mismatches: 31, Indels: 13
0.74 0.19 0.08
Matches are distributed among these distances:
44 9 0.07
45 9 0.07
46 58 0.47
47 25 0.20
48 19 0.15
49 1 0.01
50 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTAACTTACATCTCGAGGCCGATGCATA
Found at i:63382227 original size:47 final size:44
Alignment explanation
Indices: 63382113--63382248 Score: 143
Period size: 47 Copynumber: 3.0 Consensus size: 44
63382103 TACATCTCGA
*
63382113 GGCCGATGCATATCCCAGACATGTCTTACACTAGCACCCATCTCAA-T
1 GGCCGATGCATATCCCAGACATGTCTTACACTAG---CC-TCACAATT
* *
63382160 -GACGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATGT
1 GGCCGATG-CATATCCCAGACAT-GTCTTACACTAGC-CTCACAAT-T
*
63382207 GGCCGATGCATATCCTAGACATGTCTTACACTAGCC-CACAAT
1 GGCCGATGCATATCCCAGACATGTCTTACACTAGCCTCACAAT
63382249 AGCTTATATG
Statistics
Matches: 77, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
44 6 0.08
45 7 0.09
46 20 0.26
47 26 0.34
48 18 0.23
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (44 bp):
GGCCGATGCATATCCCAGACATGTCTTACACTAGCCTCACAATT
Found at i:63386752 original size:39 final size:39
Alignment explanation
Indices: 63386698--63386953 Score: 458
Period size: 39 Copynumber: 6.6 Consensus size: 39
63386688 GAATTTAAGG
*
63386698 CCGGATATAATTCCAGCTCATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
* *
63386737 CCGGATAAAATTCCAGCACATAGCCTGCAGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
63386776 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
* *
63386815 CCGGATAAAATTCCAGCACATAGCCTGCGGACTTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
63386854 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
63386893 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
63386932 CCGGATATAATTTCAGCACATA
1 CCGGATATAATTCCAGCACATA
63386954 CAATTATGAT
Statistics
Matches: 207, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 207 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
Found at i:63394577 original size:39 final size:39
Alignment explanation
Indices: 63394534--63394828 Score: 482
Period size: 39 Copynumber: 7.6 Consensus size: 39
63394524 GAATTTAAGC
*
63394534 CCGGATATAATTCCAGCTCATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
* **
63394573 CCGGATAAAATTCCAGCACATAGCCTGTAGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
63394612 CCGGATATAATTCCAGCACATAACCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
* *
63394651 CTGGATATAATTCCAGCACATAGCCTGCGGACTTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
63394690 CCGGATAAAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
* *
63394729 CCGGATATAATTCCAGCACATAGCCTACTGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
63394768 CCGGATATAATTCCAGTACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
63394807 CCGGATATAATTTCAGCACATA
1 CCGGATATAATTCCAGCACATA
63394829 CAATTATGAT
Statistics
Matches: 234, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 234 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
Found at i:63398589 original size:38 final size:37
Alignment explanation
Indices: 63398546--63398669 Score: 140
Period size: 38 Copynumber: 3.2 Consensus size: 37
63398536 AGCTTAAAGA
*
63398546 CCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TATGCTGGTATTATATCCGGGTTAAAT
* * *
63398584 CCCGCAAGCTTCGTGCTTGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTT-ATGCTGGTATTATATCCGGGTTAAAT
* *
63398622 CCCGCAGGCTTAGTGCTGGTACTATATCCGAGCTTAAAGT
1 CCCGCAGGCTTA-TGCTGGTATTATATCCG-GGTTAAA-T
*
63398662 CCCACAGG
1 CCCGCAGG
63398670 TTTTGTGCTG
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
37 1 0.01
38 57 0.79
39 6 0.08
40 8 0.11
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (37 bp):
CCCGCAGGCTTATGCTGGTATTATATCCGGGTTAAAT
Found at i:63401847 original size:28 final size:28
Alignment explanation
Indices: 63401815--63401879 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
63401805 ATTTACTAGA
*
63401815 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
63401843 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
63401871 ATACCCCTA
1 ATACCCCTA
63401880 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:63402086 original size:29 final size:28
Alignment explanation
Indices: 63401985--63402075 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
63401975 AGGAAGCGTC
63401985 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
63402013 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
63402041 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
63402070 CTGGTG
1 CTGGTG
63402076 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:63402100 original size:56 final size:55
Alignment explanation
Indices: 63401985--63402100 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 55
63401975 AGGAAGCGTC
* *
63401985 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
63402041 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
63402097 CTGG
1 CTGG
63402101 CAACCATGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
55 9 0.17
56 29 0.56
57 14 0.27
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:63403186 original size:11 final size:10
Alignment explanation
Indices: 63403158--63403191 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
63403148 AGCCTATAAG
63403158 TATTCTGAAT
1 TATTCTGAAT
*
63403168 TTTTCTGAAT
1 TATTCTGAAT
63403178 ATATTCTGAAT
1 -TATTCTGAAT
63403189 TAT
1 TAT
63403192 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:63409658 original size:28 final size:28
Alignment explanation
Indices: 63409626--63409690 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
63409616 ATTTACTAGA
* *
63409626 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATATATGCAAAATGACCATT
* *
63409654 ATACCCCTATATATGCTAAATGACCTTT
1 ATACCCCTATATATGCAAAATGACCATT
63409682 ATACCCCTA
1 ATACCCCTA
63409691 GGATTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.32
Consensus pattern (28 bp):
ATACCCCTATATATGCAAAATGACCATT
Found at i:63409837 original size:28 final size:28
Alignment explanation
Indices: 63409796--63409885 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
63409786 ACGAAGCGTC
63409796 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
63409824 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
63409852 CT-GTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
63409880 CTGGTG
1 CTGGTG
63409886 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
27 22 0.39
28 31 0.55
29 3 0.05
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:63410385 original size:19 final size:18
Alignment explanation
Indices: 63410338--63410378 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
63410328 TAATAAGGCC
**
63410338 TTTTAATTGTTTTTATGG
1 TTTTAATTACTTTTATGG
*
63410356 TTTTAATTACTTTTATTG
1 TTTTAATTACTTTTATGG
63410374 TTTTA
1 TTTTA
63410379 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.02, G:0.10, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGG
Found at i:63420736 original size:8 final size:8
Alignment explanation
Indices: 63420694--63420718 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63420684 ATATAGACTA
63420694 AATAAAAT
1 AATAAAAT
63420702 AATAAAAT
1 AATAAAAT
63420710 AATAAAAT
1 AATAAAAT
63420718 A
1 A
63420719 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:63420742 original size:29 final size:31
Alignment explanation
Indices: 63420691--63420759 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
63420681 TATATATAGA
*
63420691 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAACAATTAT
* *
63420720 CTTATTAAAAT-ATTAAATAAATAACAATTAT
1 CTAATTAAAATAATAAAAT-AATAACAATTAT
63420751 CTAATTAAA
1 CTAATTAAA
63420760 TAACTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAACAATTAT
Found at i:63421052 original size:41 final size:41
Alignment explanation
Indices: 63420997--63421079 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
63420987 TACCTTCAAG
63420997 TTTTTCATATTTACACTTTAATCCCTCAAATTTTGAGTATT
1 TTTTTCATATTTACACTTTAATCCCTCAAATTTTGAGTATT
63421038 TTTTTCATATTTACACTTTAATCCCTCAAATTTTGAGTATT
1 TTTTTCATATTTACACTTTAATCCCTCAAATTTTGAGTATT
63421079 T
1 T
63421080 ACTCTTGGCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.52
Consensus pattern (41 bp):
TTTTTCATATTTACACTTTAATCCCTCAAATTTTGAGTATT
Found at i:63439413 original size:50 final size:48
Alignment explanation
Indices: 63439251--63439419 Score: 161
Period size: 48 Copynumber: 3.6 Consensus size: 48
63439241 GACGAAAGCC
*
63439251 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTAC-GAGATGT--GTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGC-ACAGATATGTGGGTT
* * * * **
63439295 AGTGTAACACCATGTTTGGGACATGGCATCGTCACATATA-GAGGTGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGATATGTGG-GTT
* *
63439343 AGTGTAAGATCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAGTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGATATGTG-G-GTT
**
63439393 AGCATAAGACCATGTTTGGGACATGGC
1 AGTGTAAGACCATGTTTGGGACATGGC
63439420 GTTAGCCTCG
Statistics
Matches: 97, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
44 8 0.08
45 17 0.18
46 9 0.09
48 36 0.37
49 2 0.02
50 25 0.26
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGATATGTGGGTT
Found at i:63439415 original size:98 final size:92
Alignment explanation
Indices: 63439248--63439419 Score: 229
Period size: 98 Copynumber: 1.8 Consensus size: 92
63439238 TGAGACGAAA
* **
63439248 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGTGTTAGTGTAACACCATGTTTG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTTAGCATAACACCATGTTTG
63439313 GGACATGGCATCGTCACATATAGAGGT
66 GGACATGGCATCGTCACATATAGAGGT
* *
63439340 GCCAGTGTAAGATCATGTCTGGGACATGGCATCGGC-ACAGATATGTGAGAGTTAGCATAAGACC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-GAGATGT----GTTAGCATAACACC
63439404 ATGTTTGGGACATGGC
59 ATGTTTGGGACATGGC
63439420 GTTAGCCTCG
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
92 12 0.18
93 15 0.22
94 14 0.21
98 27 0.40
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (92 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTTAGCATAACACCATGTTTG
GGACATGGCATCGTCACATATAGAGGT
Found at i:63447128 original size:47 final size:46
Alignment explanation
Indices: 63446824--63447138 Score: 191
Period size: 47 Copynumber: 6.7 Consensus size: 46
63446814 TTTGTGTGCT
63446824 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTACATT-AT-GAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATGGAGAGCC
* * * *
63446870 AGTGTAAGACCATGTATGGGACATGGCATTGGCTTTGATACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAT-GGAGAGCC
* * * *
63446918 AGTGTAAGA-CATGTATGGGACAT-GCATC-AGC-T-ACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGATG-GA-GAGCC
* * * ** *
63446962 AGTGTAAAACCATATCTGGAACATGGCATCGACACGGGTATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCG--ACTTG-ATG-GAGAGCC
* * * * * *
63447012 AGTGTAAGACCATGTCCT-GAACATGGCGTCGACCTCGATTTCGATAGTC
1 AGTGTAAGACCATGT-CTGGGACATGGCATCGA-CTTGA--TGGAGAGCC
*
63447061 AGTGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGA-GAGCC
* *
63447108 AGTGTAAGACTATGTCTGGGACATAGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
63447139 GCATTATACC
Statistics
Matches: 208, Mismatches: 39, Indels: 43
0.72 0.13 0.15
Matches are distributed among these distances:
43 3 0.01
44 12 0.06
45 14 0.07
46 24 0.12
47 59 0.28
48 28 0.13
49 34 0.16
50 28 0.13
51 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAGAGCC
Found at i:63448273 original size:20 final size:21
Alignment explanation
Indices: 63448234--63448273 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63448224 GTTATAATGA
63448234 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
63448255 CCACACTGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
63448274 ATTTTAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.40, G:0.28, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:63452086 original size:25 final size:26
Alignment explanation
Indices: 63452057--63452109 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
63452047 AAATGAAGGG
63452057 GAAAAT-AGAGGGCTTA-TGAATGA-GA
1 GAAAATGAGA-GG-TTAGTGAATGATGA
63452082 GAAAATGAGAGGTTAGTGAATGATGA
1 GAAAATGAGAGGTTAGTGAATGATGA
63452108 GA
1 GA
63452110 GGAAATGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 3 0.12
25 15 0.60
26 7 0.28
ACGTcount: A:0.43, C:0.02, G:0.34, T:0.21
Consensus pattern (26 bp):
GAAAATGAGAGGTTAGTGAATGATGA
Found at i:63453472 original size:2 final size:2
Alignment explanation
Indices: 63453465--63453508 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
63453455 TTGAATAGAG
63453465 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
63453507 CT
1 CT
63453509 TTTTATTTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:63455688 original size:42 final size:42
Alignment explanation
Indices: 63455639--63455720 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
63455629 AGTTAATAGG
* *
63455639 GCACTTAGTGTGCGAAATCGAGATAGCTTCAGTTATATATTT
1 GCACTTAGTGTGAGAAATCGAGATAGCTTCAGCTATATATTT
* * *
63455681 GCACTTAGTGTGAGAGATTGAGATAGCTTCGGCTATATAT
1 GCACTTAGTGTGAGAAATCGAGATAGCTTCAGCTATATAT
63455721 ATATATACAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.34
Consensus pattern (42 bp):
GCACTTAGTGTGAGAAATCGAGATAGCTTCAGCTATATATTT
Found at i:63460364 original size:14 final size:15
Alignment explanation
Indices: 63460345--63460377 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
63460335 AACTATTAAC
63460345 AAAAAA-TAAACATA
1 AAAAAATTAAACATA
*
63460359 AAAAAATTAAGCATA
1 AAAAAATTAAACATA
63460374 AAAA
1 AAAA
63460378 TATATGTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.76, C:0.06, G:0.03, T:0.15
Consensus pattern (15 bp):
AAAAAATTAAACATA
Found at i:63460970 original size:18 final size:18
Alignment explanation
Indices: 63460906--63460955 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
63460896 ATTAAGAATG
63460906 TTATTAAATTATATATTA
1 TTATTAAATTATATATTA
63460924 TTATTAAATTATATATTA
1 TTATTAAATTATATATTA
63460942 TTATTAAATTATAT
1 TTATTAAATTATAT
63460956 TTAATAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTATTAAATTATATATTA
Found at i:63463551 original size:9 final size:9
Alignment explanation
Indices: 63463530--63463672 Score: 53
Period size: 9 Copynumber: 15.2 Consensus size: 9
63463520 TGTTTAGAGT
63463530 TTTTTAAAA
1 TTTTTAAAA
63463539 -TTTTAAAA
1 TTTTTAAAA
**
63463547 TTTTTAACTC
1 TTTTTAA-AA
*
63463557 TTTTTATATA
1 TTTTTA-AAA
*
63463567 TTCTTTAAGATT
1 TT-TTTAA-A-A
*
63463579 TTTTTATAA
1 TTTTTAAAA
*
63463588 TTTTT-ATA
1 TTTTTAAAA
63463596 TTTGTTAAAA
1 TTT-TTAAAA
* *
63463606 -ATATATAAA
1 TTTTTA-AAA
*
63463615 -TTTTGAAA
1 TTTTTAAAA
63463623 TTTTTATAAA
1 TTTTTA-AAA
*
63463633 TATTTTGAAA
1 T-TTTTAAAA
63463643 -TTTTAAAA
1 TTTTTAAAA
63463651 TTATTTTAAAA
1 -T-TTTTAAAA
*
63463662 ATTTTAAAA
1 TTTTTAAAA
63463671 TT
1 TT
63463673 ATCCGTGTAA
Statistics
Matches: 99, Mismatches: 20, Indels: 30
0.66 0.13 0.20
Matches are distributed among these distances:
8 24 0.24
9 32 0.32
10 20 0.20
11 21 0.21
12 2 0.02
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:63463593 original size:20 final size:19
Alignment explanation
Indices: 63463539--63463593 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 19
63463529 TTTTTTAAAA
* *
63463539 TTTTAAAATTTTTAACTCT
1 TTTTATAATTTTTAAATCT
*
63463558 TTTTATATATTCTTTAAGATTT
1 TTTTATA-ATT-TTTAA-ATCT
63463580 TTTTATAATTTTTA
1 TTTTATAATTTTTA
63463594 TATTTGTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 6 0.20
20 7 0.23
21 8 0.27
22 9 0.30
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTATAATTTTTAAATCT
Found at i:63463644 original size:28 final size:28
Alignment explanation
Indices: 63463612--63463672 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
63463602 AAAAATATAT
* * *
63463612 AAATTTTGAAATT-TTTATAAATATTTTG
1 AAATTTTAAAATTATTT-TAAAAATTTTA
63463640 AAATTTTAAAATTATTTTAAAAATTTTA
1 AAATTTTAAAATTATTTTAAAAATTTTA
63463668 AAATT
1 AAATT
63463673 ATCCGTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 26 0.90
29 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AAATTTTAAAATTATTTTAAAAATTTTA
Found at i:63463655 original size:19 final size:19
Alignment explanation
Indices: 63463614--63463674 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 19
63463604 AAATATATAA
63463614 ATTTTGAAATTTTTATAAA-T
1 ATTTTGAAA-TTTTA-AAATT
63463634 ATTTTGAAATTTTAAAATT
1 ATTTTGAAATTTTAAAATT
*
63463653 ATTTTAAAAATTTTAAAATT
1 ATTTT-GAAATTTTAAAATT
63463673 AT
1 AT
63463675 CCGTGTAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 24 0.63
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (19 bp):
ATTTTGAAATTTTAAAATT
Found at i:63463664 original size:12 final size:11
Alignment explanation
Indices: 63463642--63463674 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
63463632 ATATTTTGAA
63463642 ATTTTAAAATT
1 ATTTTAAAATT
63463653 ATTTTAAAA--
1 ATTTTAAAATT
63463662 ATTTTAAAATT
1 ATTTTAAAATT
63463673 AT
1 AT
63463675 CCGTGTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.45
11 11 0.55
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
ATTTTAAAATT
Found at i:63479193 original size:50 final size:50
Alignment explanation
Indices: 63479113--63479437 Score: 323
Period size: 50 Copynumber: 6.5 Consensus size: 50
63479103 CCATTGTGAG
*
63479113 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* * * * * * * **
63479163 TCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCG-TTAACTTCTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGA
* * * * * *
63479214 TCACGTCTGTAGTACTAAGTGCAGGCTATTACGTGTATCAGATGGTTAAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
*
63479264 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
* * * * * * *
63479314 TCGCCTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGA
* * * *
63479365 TCACGTGTGTAGTACTAGGTGCAGGCTACTACGTGTATCAGATGGTTA-A
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
*
63479414 GTCATGTGTGTAGTACTAAGTGCA
1 -TCACGTGTGTAGTACTAAGTGCA
63479438 TGTGACACCC
Statistics
Matches: 216, Mismatches: 52, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
49 7 0.03
50 138 0.64
51 69 0.32
52 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGA
Found at i:63479288 original size:101 final size:101
Alignment explanation
Indices: 63479113--63479294 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
63479103 CCATTGTGAG
* * ** *
63479113 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTCTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAATCACATGTGTAGTAC
63479178 TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTA
66 TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTA
* * * *
63479214 TCACGTCTGTAGTACTAAGTGCAGGCTATTACGTGTATCAGATGGTTAAATCACGTGTGTAGTAC
1 TCACGTCTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAATCACATGTGTAGTAC
*
63479279 TAAGTGCAGGCTACTA
66 TAAATGCAGGCTACTA
63479295 CGTGTACCAG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (101 bp):
TCACGTCTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAATCACATGTGTAGTAC
TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTA
Found at i:63479387 original size:151 final size:151
Alignment explanation
Indices: 63479113--63479437 Score: 571
Period size: 151 Copynumber: 2.2 Consensus size: 151
63479103 CCATTGTGAG
63479113 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
*
63479178 TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTATCACGTCTGTAGTACTAAGTGCAGGCTAT
66 TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTATCACGTCTGTAGTACTAAGTGCAGGCTAC
63479243 TACGTGTATCAGATGGTTAAA
131 TACGTGTATCAGATGGTTAAA
*
63479264 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCCTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* * *
63479329 TAAGTGCAGGCTACTATGCGTACCCGTTAACTT-TGATCACGTGTGTAGTACTAGGTGCAGGCTA
66 TAAATGCAGGCTACTATGCGTACCCGTTAACTTCT-ATCACGTCTGTAGTACTAAGTGCAGGCTA
*
63479393 CTACGTGTATCAGATGGTTAAG
130 CTACGTGTATCAGATGGTTAAA
*
63479415 TCATGTGTGTAGTACTAAGTGCA
1 TCACGTGTGTAGTACTAAGTGCA
63479438 TGTGACACCC
Statistics
Matches: 166, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
150 1 0.01
151 165 0.99
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAATGCAGGCTACTATGCGTACCCGTTAACTTCTATCACGTCTGTAGTACTAAGTGCAGGCTAC
TACGTGTATCAGATGGTTAAA
Found at i:63481822 original size:48 final size:48
Alignment explanation
Indices: 63481760--63482034 Score: 282
Period size: 48 Copynumber: 5.4 Consensus size: 48
63481750 TATATATGTG
63481760 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
63481808 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* ** * * * * *
63481856 TGTAGATATGTATATGTGGTAAAGCCGAATG-GCTAATGTGAAATATGTATGAGATATGTATA
1 TGT-G----GTA-AAGCCG-AATGGCTAATGTG-AAATATG---TA--T--GAGATATGTATA
* *
63481918 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * * *
63481966 CGTGGTAAAGCAGAATGGCTAGTGTAAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
63482014 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
63482035 GTGATTCGGC
Statistics
Matches: 187, Mismatches: 24, Indels: 32
0.77 0.10 0.13
Matches are distributed among these distances:
48 126 0.67
49 1 0.01
50 1 0.01
52 2 0.01
53 3 0.02
54 4 0.02
55 24 0.13
56 4 0.02
57 3 0.02
58 2 0.01
60 1 0.01
61 1 0.01
62 15 0.08
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:63481864 original size:14 final size:14
Alignment explanation
Indices: 63481841--63481872 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
63481831 GTGAAATATG
63481841 TATG-AGATATGTA
1 TATGTAGATATGTA
63481854 TATGTAGATATGTA
1 TATGTAGATATGTA
63481868 TATGT
1 TATGT
63481873 GGTAAAGCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TATGTAGATATGTA
Found at i:63481882 original size:62 final size:62
Alignment explanation
Indices: 63481793--63481920 Score: 249
Period size: 62 Copynumber: 2.1 Consensus size: 62
63481783 GTGAAATATG
63481793 TATG-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
1 TATGTAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
63481854 TATGTAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
1 TATGTAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
63481916 TATGT
1 TATGT
63481921 GGTAAAGCCG
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
61 4 0.06
62 62 0.94
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (62 bp):
TATGTAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
Found at i:63481883 original size:110 final size:97
Alignment explanation
Indices: 63481760--63482034 Score: 381
Period size: 96 Copynumber: 2.7 Consensus size: 97
63481750 TATATATGTG
63481760 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
63481825 GCTAATGTGAAATATGTATGAGATATGTATATGTAGATATGTATA
66 GCTAA-GTG-----TG-A--A-ATATG--TATG-AGATATGTATA
63481870 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
63481935 GCT-AGTGTGAACTATGTATGAGATATGTATA
66 GCTAAGTGTGAAATATGTATGAGATATGTATA
* * * *
63481966 CGTGGTAAAGCAGAATGGCTAGTGTAAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
63482031 GCTA
66 GCTA
63482035 GTGATTCGGC
Statistics
Matches: 159, Mismatches: 5, Indels: 15
0.89 0.03 0.08
Matches are distributed among these distances:
96 75 0.47
97 4 0.03
99 4 0.03
100 1 0.01
102 1 0.01
103 2 0.01
108 3 0.02
109 1 0.01
110 68 0.43
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (97 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAAGTGTGAAATATGTATGAGATATGTATA
Found at i:63482035 original size:48 final size:48
Alignment explanation
Indices: 63481854--63482037 Score: 314
Period size: 48 Copynumber: 3.8 Consensus size: 48
63481844 GAGATATGTA
*
63481854 TATGTAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATG-AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
*
63481903 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
* * *
63481951 TATGAGATATGTATACGTGGTAAAGCAGAATGGCTAGTGTAAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
63481999 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTG
63482038 ATTCGGCTAG
Statistics
Matches: 127, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
48 123 0.97
49 4 0.03
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
Found at i:63482257 original size:37 final size:37
Alignment explanation
Indices: 63482207--63482309 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
63482197 GGAAATATAT
63482207 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
63482244 TCCGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
63482281 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
63482310 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:63483420 original size:16 final size:16
Alignment explanation
Indices: 63483399--63483430 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63483389 AGAATGGAGT
63483399 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
63483415 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
63483431 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:63485693 original size:40 final size:40
Alignment explanation
Indices: 63485636--63485736 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 40
63485626 TGTCCATGTT
* * *
63485636 TGCACAT-TAGTGTCCCTGTTTGTACTTCGGTACCCTTGAA
1 TGCACATCT-GTGGCCCTGTTTGTACTTCGGTACCCCTAAA
*
63485676 TGCACATCTGTGGCCCTGTTTGTACTTTGGTACCCCTAAA
1 TGCACATCTGTGGCCCTGTTTGTACTTCGGTACCCCTAAA
63485716 TGCACATCTGT-GCCCTTGTTT
1 TGCACATCTGTGGCCC-TGTTT
63485737 TCACTTCAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
39 4 0.07
40 50 0.91
41 1 0.02
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.38
Consensus pattern (40 bp):
TGCACATCTGTGGCCCTGTTTGTACTTCGGTACCCCTAAA
Found at i:63489595 original size:42 final size:41
Alignment explanation
Indices: 63489516--63489665 Score: 144
Period size: 41 Copynumber: 3.6 Consensus size: 41
63489506 GAGCTTGGTC
*
63489516 TCGAAGAGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * *
63489557 TCGAAGGGCTTTTAAGAGCTAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGCTTTT--GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
63489599 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
63489640 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
63489666 GAGTCAGACT
Statistics
Matches: 87, Mismatches: 17, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
39 4 0.05
40 8 0.09
41 38 0.44
42 26 0.30
43 11 0.13
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:63489648 original size:41 final size:40
Alignment explanation
Indices: 63489496--63489665 Score: 143
Period size: 41 Copynumber: 4.2 Consensus size: 40
63489486 GCTAATCGGG
* *
63489496 GTCTAAATCCGAGCTTGGTCTCGAAGAGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* * *
63489537 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTAAGAGCTAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGCTTTT--GAGCCAGT
* *
63489580 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
63489620 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
63489661 G-CTAA
1 GTCTAA
63489666 GAGTCAGACT
Statistics
Matches: 104, Mismatches: 13, Indels: 26
0.73 0.09 0.18
Matches are distributed among these distances:
39 7 0.07
40 13 0.12
41 51 0.49
42 21 0.20
43 8 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:63497801 original size:42 final size:41
Alignment explanation
Indices: 63497721--63497867 Score: 149
Period size: 40 Copynumber: 3.6 Consensus size: 41
63497711 GAGCTTGGTC
*
63497721 TCGAAGGGCTTTTGAGCCAGTGCTGATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTCATAACCGAACTTAGTT
*
63497762 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTCATAACCGAACTTAGTT
* * * * **
63497804 CCGAAGGGCCTTCGAGCCAGTAG-TC-TAATCCGAGCTT-GGC
1 TCGAAGGGCTTTTGAGCCAGT-GCTCATAA-CCGAACTTAGTT
*
63497844 TCGAAGGGCTTTTGAGCCGGTGCT
1 TCGAAGGGCTTTTGAGCCAGTGCT
63497868 AAGAGTCGGA
Statistics
Matches: 88, Mismatches: 13, Indels: 11
0.79 0.12 0.10
Matches are distributed among these distances:
39 1 0.01
40 30 0.34
41 20 0.23
42 28 0.32
43 9 0.10
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTCATAACCGAACTTAGTT
Found at i:63499425 original size:27 final size:27
Alignment explanation
Indices: 63499394--63499528 Score: 155
Period size: 27 Copynumber: 5.0 Consensus size: 27
63499384 TAGAATACTT
**
63499394 TAGTTTACCAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
63499421 TAGTTTGTAAAATTACTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* **
63499448 TGGTTTATAAAATCCCCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
*
63499475 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
63499502 TGGTTTGTAAAATTA-CTAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
63499528 T
1 T
63499529 GTAGGGTAGA
Statistics
Matches: 91, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 11 0.12
27 80 0.88
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.31
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:63499468 original size:54 final size:54
Alignment explanation
Indices: 63499409--63499514 Score: 185
Period size: 54 Copynumber: 2.0 Consensus size: 54
63499399 TACCAAATTA
* *
63499409 CCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCC
1 CCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTATAAAATCC
*
63499463 CCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAAT
1 CCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTATAAAAT
63499515 TACTAAATAC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (54 bp):
CCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTATAAAATCC
Found at i:63499541 original size:26 final size:26
Alignment explanation
Indices: 63499481--63499570 Score: 74
Period size: 27 Copynumber: 3.4 Consensus size: 26
63499471 CCCCTAGTTT
* **
63499481 GTAAAATTACCAAAATACCCCTGGT-TT
1 GTAAAATTA-CGAAATACCCCT-GTAGG
*
63499508 GTAAAATTACTAAATACCCCTGTAGG
1 GTAAAATTACGAAATACCCCTGTAGG
* * * *
63499534 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAAAATTA-CGAAATACCCCTGTAGG
63499561 GTAAAATTAC
1 GTAAAATTAC
63499571 CATTTTACCC
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
25 2 0.04
26 20 0.38
27 30 0.58
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (26 bp):
GTAAAATTACGAAATACCCCTGTAGG
Found at i:63499860 original size:27 final size:26
Alignment explanation
Indices: 63499816--63499867 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63499806 CTCGCTGCAA
*
63499816 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
63499843 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
63499868 GCAACCTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:63500095 original size:6 final size:6
Alignment explanation
Indices: 63500086--63500293 Score: 124
Period size: 6 Copynumber: 33.7 Consensus size: 6
63500076 TTTCATTCAC
* *
63500086 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
63500136 ATTCTT ATTCT- AGTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
63500185 ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG
1 ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * * *
63500235 ATTTTG GTTTTG ATTCTG -TCACCTG ATTCTG ATTTTG ATTTTG ATTCTC
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
63500284 ATTTTG ATTC
1 ATTCTG ATTC
63500294 AAGTTATGAT
Statistics
Matches: 160, Mismatches: 22, Indels: 40
0.72 0.10 0.18
Matches are distributed among these distances:
5 12 0.08
6 123 0.77
7 17 0.11
8 8 0.05
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:63500145 original size:25 final size:25
Alignment explanation
Indices: 63500086--63500237 Score: 93
Period size: 25 Copynumber: 6.6 Consensus size: 25
63500076 TTTCATTCAC
* *
63500086 ATTCTGATTCTGATTCTGTTACTTG
1 ATTCTGATTCTGATTCTGTTACCTA
*
63500111 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
* *
63500136 ATTCTTATTCT-A----GTT--CTG
1 ATTCTGATTCTGATTCTGTTACCTA
* *
63500154 ATTCTGATTCTG-TTACCTGATA-CTG
1 ATTCTGATTCTGATT--CTGTTACCTA
*
63500179 ATTCTGATTCTG-TTACT-TGA--T-
1 ATTCTGATTCTGATT-CTGTTACCTA
63500200 A--CTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
63500223 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
63500238 TTGGTTTTGA
Statistics
Matches: 100, Mismatches: 12, Indels: 30
0.70 0.08 0.21
Matches are distributed among these distances:
18 12 0.12
19 11 0.11
20 7 0.07
21 1 0.01
22 2 0.02
23 2 0.02
24 5 0.05
25 60 0.60
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:63500190 original size:37 final size:37
Alignment explanation
Indices: 63500109--63500190 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
63500099 TTCTGTTACT
* * *
63500109 TGATACTGATTCTGATTCTGTTACCTAATTCTTATTC
1 TGATTCTGATTCTGATTCTGTTACCTAATACTGATTC
*
63500146 T-AGTTCTGATTCTGATTCTGTTACCTGATACTGATTC
1 TGA-TTCTGATTCTGATTCTGTTACCTAATACTGATTC
63500183 TGATTCTG
1 TGATTCTG
63500191 TTACTTGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
36 1 0.03
37 37 0.95
38 1 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTTACCTAATACTGATTC
Found at i:63500208 original size:62 final size:62
Alignment explanation
Indices: 63500087--63500208 Score: 199
Period size: 62 Copynumber: 2.0 Consensus size: 62
63500077 TTCATTCACA
* * *
63500087 TTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTTATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATACTGATTCTAG
* *
63500149 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACTTGATACTGATTCT
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATACTGATTCT
63500209 GATTCTGTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATACTGATTCTAG
Found at i:63500233 original size:87 final size:87
Alignment explanation
Indices: 63500089--63500274 Score: 293
Period size: 87 Copynumber: 2.1 Consensus size: 87
63500079 CATTCACATT
*
63500089 CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTTATTCT-AGTTCT
1 CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGA-TTCT
*
63500153 GATTCTGATTCTGTTACCTGATA
65 GATTCTGATTCTGTCACCTGATA
*
63500176 CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTTTG
1 CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTCTG
* * *
63500241 GTTTTGATTCTGTCACCTGATT
66 ATTCTGATTCTGTCACCTGATA
*
63500263 CTGATTTTGATT
1 CTGATTCTGATT
63500275 TTGATTCTCA
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
87 90 0.99
88 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.49
Consensus pattern (87 bp):
CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTCTG
ATTCTGATTCTGTCACCTGATA
Found at i:63504134 original size:53 final size:52
Alignment explanation
Indices: 63504066--63504273 Score: 175
Period size: 53 Copynumber: 3.9 Consensus size: 52
63504056 TTCCTTTTTA
* * *
63504066 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTAT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTAT
* * * * * *
63504118 GAACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTAT
* * ** * * * *
63504171 ATTAGTTTATCAATGCCATTTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 A--A-CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACC-T-TAT
* *
63504228 AACTTACCAATGTCATGCCTTCG-CATGGTCTTACTTGGTATCCTTA
1 AACTTACCAATGCCATGCCTT-GACATGGTCTTACATGGTATCCTTA
63504274 AACCCTAATG
Statistics
Matches: 121, Mismatches: 28, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
52 1 0.01
53 45 0.37
54 34 0.28
55 37 0.31
56 1 0.01
57 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.38
Consensus pattern (52 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTAT
Found at i:63507955 original size:44 final size:42
Alignment explanation
Indices: 63507886--63508052 Score: 129
Period size: 43 Copynumber: 3.9 Consensus size: 42
63507876 CTATATGTTT
** *
63507886 TTTCGTGTAAGACCACATCTGGGACATTGGCATCG-ACTTATAA
1 TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGTA-TT-TAA
* * *
63507929 TTTACGTGTAAGACCATGTCTAGGACATTAGCGTCGTATTTGA
1 TTT-CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTAA
* * * * * *
63507972 TTTCGCGTAAGACCCTGTCTTGGACAGTGGCATCAATATTTGA
1 TTTCGTGTAAGACCATGTCTAGGACATTGGCATC-GTATTTAA
* * * ** *
63508015 TTACATGTAAGACCACGTCTAGGATGTTGGCATTGTAT
1 TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGTAT
63508053 AAGCTTTCCA
Statistics
Matches: 97, Mismatches: 24, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
42 28 0.29
43 39 0.40
44 29 0.30
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTAA
Found at i:63516931 original size:37 final size:37
Alignment explanation
Indices: 63516881--63516959 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
63516871 TTATTACGAA
* *
63516881 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
63516918 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
63516955 GTCTT
1 GTCTT
63516960 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Done.