Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 196 of 316
Found at i:63517165 original size:47 final size:47
Alignment explanation
Indices: 63517078--63517519 Score: 731
Period size: 47 Copynumber: 9.4 Consensus size: 47
63517068 CCCTTCGGGA
* * * * * * * *
63517078 CTTATCACGTTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63517125 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63517172 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63517219 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63517266 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63517313 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63517360 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63517407 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63517454 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63517501 CTTATCACATATATACACT
1 CTTATCACATATATACACT
63517520 GTCTTGGCTG
Statistics
Matches: 373, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 373 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63520094 original size:43 final size:42
Alignment explanation
Indices: 63519983--63520100 Score: 107
Period size: 43 Copynumber: 2.8 Consensus size: 42
63519973 ATGATTTATG
* * * * *
63519983 TGTAAGACCATGTCTGGGACATCGACATCGTATTTGACTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGACTACA
* *
63520025 TGTAAGGCC-CTGTCTGGGATAG-TGGCATCGATATTTGA-TCACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGACT-ACA
*
63520068 TGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTAT
63520101 GAGCTTTCCA
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
42 27 0.45
43 32 0.53
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGACTACA
Found at i:63523547 original size:40 final size:39
Alignment explanation
Indices: 63523503--63523686 Score: 140
Period size: 40 Copynumber: 4.5 Consensus size: 39
63523493 TTCAGATATA
63523503 TATATGTGGCACTTAGTGTGCAACTCAAGAA-AGCTTCGGC
1 TATAT-TGGCACTTAGTGTGCAACTC-AGAATAGCTTCGGC
* * *
63523543 TATATATGGCACTTAGTGTGCGATTCGGAATAGCTTCGGC
1 TATAT-TGGCACTTAGTGTGCAACTCAGAATAGCTTCGGC
* *
63523583 TATATTAGGCACTTAGTGTGTGAGAC-C-GAGATAGCTTCAGC
1 TATATT-GGCACTTAGTGTG-CA-ACTCAGA-ATAGCTTCGGC
* * * * * *
63523624 TATATAAGGCACTTGGCGTGCAAAATTATAATAGCTTCGGC
1 TATAT-TGGCACTTAGTGTGC-AACTCAGAATAGCTTCGGC
*
63523665 TATGTATTGGCACTAAGTGTGC
1 TA--TATTGGCACTTAGTGTGC
63523687 GAGATATCGA
Statistics
Matches: 113, Mismatches: 20, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
39 4 0.04
40 53 0.47
41 40 0.35
42 13 0.12
43 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (39 bp):
TATATTGGCACTTAGTGTGCAACTCAGAATAGCTTCGGC
Found at i:63525537 original size:42 final size:42
Alignment explanation
Indices: 63525426--63525587 Score: 182
Period size: 42 Copynumber: 3.8 Consensus size: 42
63525416 TACCATACCA
* *
63525426 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATG-AAGTCTCATATTG
* * * * *
63525468 ATGCCAATAGCCCAGCTATGATATTACATGAAGTCTCACATTG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATTG
** * * *
63525511 ATATCATATCCCAGATATGGTCTTACACGTAGTCTCATAGTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATTG
*
63525553 ATGCCATATCCCAGATATGGTCTTACATGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCT
63525588 TAGTAACCCC
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
42 68 0.69
43 30 0.31
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATTG
Found at i:63534407 original size:43 final size:41
Alignment explanation
Indices: 63534345--63534497 Score: 193
Period size: 42 Copynumber: 3.7 Consensus size: 41
63534335 TACCATACCA
63534345 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAAATATGGTCTTACA-GTAATCTCATATCG
* * **
63534387 ATGCCAATAGCCCAACTATGGTCTTACACAAAGTCTCATATCG
1 ATGCC-ATATCCCAAATATGGTCTTACAGTAA-TCTCATATCG
* *
63534430 ATGTCATATCCCAAATATGGTCTTACAAGTAGTCTCATAGT-G
1 ATGCCATATCCCAAATATGGTCTTAC-AGTAATCTCATA-TCG
63534472 ATGCCATATCCC-AATATGGTCTTACA
1 ATGCCATATCCCAAATATGGTCTTACA
63534498 CGTAGTCTTA
Statistics
Matches: 96, Mismatches: 11, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
40 1 0.01
41 13 0.14
42 45 0.47
43 37 0.39
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAAATATGGTCTTACAGTAATCTCATATCG
Found at i:63536860 original size:27 final size:27
Alignment explanation
Indices: 63536830--63536924 Score: 120
Period size: 27 Copynumber: 3.5 Consensus size: 27
63536820 CCTTAGGGGC
*
63536830 ATTTCGGTAATTTTACAAGTCGAGGGT
1 ATTTCGGTAATTTTACAAATCGAGGGT
* *
63536857 ATTTCGATAATTGTACAAATCGAGGGT
1 ATTTCGGTAATTTTACAAATCGAGGGT
* *
63536884 ATTTCAGTAATTTTACAAAT-TAGGGGT
1 ATTTCGGTAATTTTACAAATCGA-GGGT
*
63536911 ATTTTGGTAATTTT
1 ATTTCGGTAATTTT
63536925 CCTTTATTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.02
27 57 0.98
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
ATTTCGGTAATTTTACAAATCGAGGGT
Found at i:63537256 original size:28 final size:29
Alignment explanation
Indices: 63537224--63537288 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 29
63537214 ACATACATGT
*
63537224 ATATGGCCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCACTAGGCCCAAATCACATTC
*
63537252 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCCAAATCACATTC
63537281 ATATGGCC
1 ATATGGCC
63537289 TATCTGGCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 17 0.50
29 17 0.50
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAATCACATTC
Found at i:63537297 original size:29 final size:29
Alignment explanation
Indices: 63537224--63537308 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
63537214 ACATACATGT
*
63537224 ATATGGCCCA-CTAGGCCCAATCTCATTC
1 ATATGGCCCATCTAGGCCCAATCACATTC
63537252 ATATGGCCCAT-TAGGCCCAAATCACATTC
1 ATATGGCCCATCTAGGCCC-AATCACATTC
*
63537281 ATATGGCCTATCT-GGCCCGAATCA-ATTC
1 ATATGGCCCATCTAGGCCC-AATCACATTC
63537309 CAAGCCATGT
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
28 21 0.41
29 29 0.57
30 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATCTAGGCCCAATCACATTC
Found at i:63542004 original size:39 final size:40
Alignment explanation
Indices: 63541942--63542168 Score: 270
Period size: 39 Copynumber: 5.8 Consensus size: 40
63541932 ACTAGCACAA
* * * **
63541942 AGCCTTCGGAACTTTAAGCCCGGATAT-ATTCCCAGCACGT
1 AGCCTACGG-ACTTTAAGTCCGGATATAATTCCCTGCATAT
63541982 AGCCTACGGA-TCTTAAGTCCGGATATAATT-CCTGCATAT
1 AGCCTACGGACT-TTAAGTCCGGATATAATTCCCTGCATAT
* * *
63542021 AGCCTGCGGACTTTAAGTTCGGATATAATTCTC-GCATAT
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCTGCATAT
* *
63542060 AGCTTACGGACTTTAAGTCCGGATATAATT-CTTGCATAT
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCTGCATAT
63542099 AGCCTACGGACTTTAAGTCCGGATATAATTCCC-GCATAT
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCTGCATAT
* *
63542138 AGCCTGCAGG-CTTTTAGTCCGGATATAATTC
1 AGCCTAC-GGACTTTAAGTCCGGATATAATTC
63542169 TCAAATATCA
Statistics
Matches: 163, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 146 0.90
40 16 0.10
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (40 bp):
AGCCTACGGACTTTAAGTCCGGATATAATTCCCTGCATAT
Found at i:63542081 original size:78 final size:78
Alignment explanation
Indices: 63541942--63542168 Score: 298
Period size: 78 Copynumber: 2.9 Consensus size: 78
63541932 ACTAGCACAA
* * **
63541942 AGCCTTCGGAACTTTAAGCCCGGATAT-ATTCCCAGCACGTAGCCTACGGA-TCTTAAGTCCGGA
1 AGCCTACGG-ACTTTAAGTCCGGATATAATTCCC-GCATATAGCCTACGGACT-TTAAGTCCGGA
63542005 TATAATTCCTGCATAT
63 TATAATTCCTGCATAT
* * * *
63542021 AGCCTGCGGACTTTAAGTTCGGATATAATTCTCGCATATAGCTTACGGACTTTAAGTCCGGATAT
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGACTTTAAGTCCGGATAT
*
63542086 AATTCTTGCATAT
66 AATTCCTGCATAT
* *
63542099 AGCCTACGGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTGCAGG-CTTTTAGTCCGGATA
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC-GGACTTTAAGTCCGGATA
63542163 TAATTC
65 TAATTC
63542169 TCAAATATCA
Statistics
Matches: 131, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 115 0.88
79 16 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (78 bp):
AGCCTACGGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGACTTTAAGTCCGGATAT
AATTCCTGCATAT
Found at i:63547615 original size:46 final size:46
Alignment explanation
Indices: 63547562--63547745 Score: 197
Period size: 46 Copynumber: 4.0 Consensus size: 46
63547552 AGTTTTGCCC
** * *
63547562 AGGTTCTGAGCTTTTGCATATGTTGCAGACTCAAGAATACATGAAT
1 AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
* * **
63547608 AGGTTCTGAGCTCCTGCATATGTTGTAAACTCGAGAATATGGGAAT
1 AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
* * * * * **
63547654 AGGTTTTGAGCTCTTACATATGTTGCGGACTCGAGCATACAGGTTT
1 AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
* ** *
63547700 AGTTTCCAAGCTCCTGCATATGTTGTAGACTCGAGAATACAGGAAT
1 AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
63547746 GTTAAGCCCT
Statistics
Matches: 108, Mismatches: 30, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
46 108 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32
Consensus pattern (46 bp):
AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
Found at i:63547719 original size:92 final size:92
Alignment explanation
Indices: 63547562--63547738 Score: 237
Period size: 92 Copynumber: 1.9 Consensus size: 92
63547552 AGTTTTGCCC
* * * **
63547562 AGGTTCTGAGCTTTTGCATATGTTGCAGACTCAAGAATACATGAATAGGTTCTGAGCTCCTGCAT
1 AGGTTCTGAGCTCTTACATATGTTGCAGACTCAAGAATACAGGAATAGGTTCCAAGCTCCTGCAT
63547627 ATGTTGTAAACTCGAGAATATGGGAAT
66 ATGTTGTAAACTCGAGAATATGGGAAT
* * * * ** *
63547654 AGGTTTTGAGCTCTTACATATGTTGCGGACTCGAGCATACAGGTTTAGTTTCCAAGCTCCTGCAT
1 AGGTTCTGAGCTCTTACATATGTTGCAGACTCAAGAATACAGGAATAGGTTCCAAGCTCCTGCAT
*
63547719 ATGTTGTAGACTCGAGAATA
66 ATGTTGTAAACTCGAGAATA
63547739 CAGGAATGTT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (92 bp):
AGGTTCTGAGCTCTTACATATGTTGCAGACTCAAGAATACAGGAATAGGTTCCAAGCTCCTGCAT
ATGTTGTAAACTCGAGAATATGGGAAT
Found at i:63556364 original size:21 final size:21
Alignment explanation
Indices: 63556340--63556381 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
63556330 TATAATATAA
63556340 TAATA-TCTAATTATATTATTT
1 TAATACTCTAATTA-ATTATTT
*
63556361 TAATACTTTAATTAATTATTT
1 TAATACTCTAATTAATTATTT
63556382 ATGACCTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TAATACTCTAATTAATTATTT
Found at i:63557280 original size:18 final size:18
Alignment explanation
Indices: 63557257--63557295 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
63557247 ACATATATAC
63557257 ATACGTGATTT-TACATAA
1 ATACGTGATTTCTACA-AA
*
63557275 ATACGTGGTTTCTACAAA
1 ATACGTGATTTCTACAAA
63557293 ATA
1 ATA
63557296 TGTGTGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (18 bp):
ATACGTGATTTCTACAAA
Found at i:63557361 original size:15 final size:16
Alignment explanation
Indices: 63557343--63557372 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
63557333 TTTTTTATTC
63557343 TAAATACGT-ATTTTG
1 TAAATACGTGATTTTG
63557358 TAAATACGTGATTTT
1 TAAATACGTGATTTT
63557373 CATAATGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (16 bp):
TAAATACGTGATTTTG
Found at i:63559251 original size:14 final size:15
Alignment explanation
Indices: 63559228--63559279 Score: 61
Period size: 14 Copynumber: 3.3 Consensus size: 15
63559218 TTTTAATTAC
63559228 AAAATTTTAATTTTAT
1 AAAA-TTTAATTTTAT
*
63559244 AATA-TTAATTTTAT
1 AAAATTTAATTTTAT
63559258 AAAATTTAATATTATAT
1 AAAATTTAAT-TT-TAT
63559275 AAAAT
1 AAAAT
63559280 ATTATGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 13 0.42
15 5 0.16
16 5 0.16
17 8 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAAATTTAATTTTAT
Found at i:63560115 original size:30 final size:30
Alignment explanation
Indices: 63560081--63560139 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
63560071 TATTTTATTG
63560081 TTAATTTTGTTATTATTTTAAAGACATTTT
1 TTAATTTTGTTATTATTTTAAAGACATTTT
*
63560111 TTAATTTTGTTATTATTTTAGAGACATTT
1 TTAATTTTGTTATTATTTTAAAGACATTT
63560140 GTTTGTTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTT
Found at i:63560244 original size:18 final size:18
Alignment explanation
Indices: 63560223--63560262 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
63560213 GAAATATTTA
*
63560223 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
63560241 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
63560259 TTTT
1 TTTT
63560263 TAAATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:63560286 original size:11 final size:12
Alignment explanation
Indices: 63560264--63560296 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
63560254 TATATTTTTT
*
63560264 AAATTTATATAA
1 AAATTAATATAA
63560276 AAA-TAATATAA
1 AAATTAATATAA
63560287 AAATTAATAT
1 AAATTAATAT
63560297 GGGAGGGCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAATTAATATAA
Found at i:63560698 original size:17 final size:17
Alignment explanation
Indices: 63560645--63560711 Score: 57
Period size: 17 Copynumber: 3.9 Consensus size: 17
63560635 TATTTATATC
63560645 TACTATTTATATTATTG
1 TACTATTTATATTATTG
* * *
63560662 AATTAAATTTCACATT-TTG
1 TACT--ATTT-ATATTATTG
63560681 TACTATTTATATTATTG
1 TACTATTTATATTATTG
*
63560698 TATTATTTA-ATTAT
1 TACTATTTATATTAT
63560712 ATTAAATCTT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
16 9 0.23
17 17 0.44
19 9 0.23
20 4 0.10
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (17 bp):
TACTATTTATATTATTG
Found at i:63564859 original size:21 final size:21
Alignment explanation
Indices: 63564812--63564875 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
63564802 TGGTTATTAT
* * *
63564812 ACACCTATAACTACATTTAAA
1 ACACCTATAACAACATTTGAG
*
63564833 ATACCTATAACAACATTTGAG
1 ACACCTATAACAACATTTGAG
* * *
63564854 ACACCTAAAACAATAATTGAG
1 ACACCTATAACAACATTTGAG
63564875 A
1 A
63564876 TTGAAATCAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.48, C:0.20, G:0.06, T:0.25
Consensus pattern (21 bp):
ACACCTATAACAACATTTGAG
Found at i:63569829 original size:60 final size:60
Alignment explanation
Indices: 63569724--63569862 Score: 156
Period size: 59 Copynumber: 2.3 Consensus size: 60
63569714 TTTAGGTCTT
* ** * * *
63569724 AATGTGAGAATAATTACTAAACTCAGGGTTTAATTTAGACCAAAAAAAAGTTTAAGCTC-C
1 AATGTGAGAATAATTACTAAACTCAAGACTTAACTTAGACCAAAAAAAAGTTCAAAC-CAC
** *
63569784 AATGTGAGAATAATTACTAAGTTCAAGACTTAACTT-GGCCAAAAAAAAGTTCAAACCAC
1 AATGTGAGAATAATTACTAAACTCAAGACTTAACTTAGACCAAAAAAAAGTTCAAACCAC
* *
63569843 AATGTGAAAAGAATTACTAA
1 AATGTGAGAATAATTACTAA
63569863 CTTTAAGCCC
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
58 1 0.01
59 36 0.54
60 30 0.45
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (60 bp):
AATGTGAGAATAATTACTAAACTCAAGACTTAACTTAGACCAAAAAAAAGTTCAAACCAC
Found at i:63570143 original size:18 final size:18
Alignment explanation
Indices: 63570115--63570158 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
63570105 GATAAAAGGG
63570115 AAATGATTTTTGTATAGAA
1 AAAT-ATTTTTGTATAGAA
63570134 AAATATTTTTGTATAGAA
1 AAATATTTTTGTATAGAA
63570152 AAATATT
1 AAATATT
63570159 GTACAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
AAATATTTTTGTATAGAA
Found at i:63571854 original size:20 final size:22
Alignment explanation
Indices: 63571829--63571868 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
63571819 AATACACTTG
*
63571829 AAACAACAA-GTATT-GATACC
1 AAACAAAAAGGTATTCGATACC
63571849 AAACAAAAAGGTATTCGATA
1 AAACAAAAAGGTATTCGATA
63571869 TTTTTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 5 0.29
22 4 0.24
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.20
Consensus pattern (22 bp):
AAACAAAAAGGTATTCGATACC
Found at i:63573995 original size:13 final size:13
Alignment explanation
Indices: 63573977--63574002 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63573967 GTTCGACAGG
63573977 GACACGCCCATGT
1 GACACGCCCATGT
63573990 GACACGCCCATGT
1 GACACGCCCATGT
63574003 ACGATTACTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.23, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:63578115 original size:27 final size:27
Alignment explanation
Indices: 63578085--63578262 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
63578075 ATATTGAGCC
* * * *
63578085 CGCACACTCAGTGCTATATATTCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
63578112 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
63578139 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
63578167 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63578194 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63578221 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63578248 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63578263 GTACAATTTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63578224 original size:82 final size:81
Alignment explanation
Indices: 63578106--63578261 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
63578096 TGCTATATAT
* * *
63578106 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
63578171 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63578188 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63578252 CACTTAGTGC
65 CACTTAGTGC
63578262 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63585434 original size:27 final size:27
Alignment explanation
Indices: 63585403--63585580 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63585393 TAAATTGTAC
63585403 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63585430 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63585456 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63585484 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63585512 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63585539 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63585566 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63585581 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63585517 original size:82 final size:81
Alignment explanation
Indices: 63585404--63585559 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63585394 AAATTGTACA
* *
63585404 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63585468 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63585485 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63585550 TGCGAGTTGA
65 TGCGAATTGA
63585560 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63585571 original size:82 final size:81
Alignment explanation
Indices: 63585400--63585580 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63585390 GATTAAATTG
* *
63585400 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63585465 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63585481 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63585545 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63585563 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63585581 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63604179 original size:31 final size:31
Alignment explanation
Indices: 63604141--63604203 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
63604131 GTTTTGCTCA
63604141 CATAATATATCACATGGAAAACCTTGTCCTT
1 CATAATATATCACATGGAAAACCTTGTCCTT
* **
63604172 CATAATATATCGCATGGAAGCCCTTGTCCTT
1 CATAATATATCACATGGAAAACCTTGTCCTT
63604203 C
1 C
63604204 CTTTGCCCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (31 bp):
CATAATATATCACATGGAAAACCTTGTCCTT
Found at i:63611066 original size:55 final size:53
Alignment explanation
Indices: 63610938--63611133 Score: 182
Period size: 55 Copynumber: 3.6 Consensus size: 53
63610928 CATACCATTC
* * * * * *
63610938 CCATGTCTCGACATGGTCTTACATGGTATCATTGCCTTAT-GAAGTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTTGGCTTATAGAACTTACCAATG
* * *
63610991 CCATGCCTTGGCATGGTCTTACATGGGACCTTTGGCTTATAGTAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTACC-TTGGCTTATAG-AACTTACCAATG
* * *
63611046 CCATGTCTTGACATGGTCTTAAATGGTATCCTT-GCTT-TAGAAACCTTACCAATTA
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTTGGCTTATAG-AA-CTTACCAA-TG
*
63611101 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTT
63611134 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 1 0.01
53 37 0.31
54 12 0.10
55 66 0.56
56 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (53 bp):
CCATGCCTTGACATGGTCTTACATGGTACCTTGGCTTATAGAACTTACCAATG
Found at i:63613637 original size:33 final size:33
Alignment explanation
Indices: 63613591--63613663 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
63613581 TTGATTCAGT
*
63613591 CTTCTTCTCATCTCCCTCTGGTCCTGTTGTGGC
1 CTTCTCCTCATCTCCCTCTGGTCCTGTTGTGGC
* *
63613624 CTTCTCCTTATCTCCCTCTGGTCCTTTTGTGGC
1 CTTCTCCTCATCTCCCTCTGGTCCTGTTGTGGC
63613657 CTTCTCC
1 CTTCTCC
63613664 ATAGTTGCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.03, C:0.38, G:0.15, T:0.44
Consensus pattern (33 bp):
CTTCTCCTCATCTCCCTCTGGTCCTGTTGTGGC
Found at i:63620037 original size:24 final size:24
Alignment explanation
Indices: 63620009--63620054 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
63619999 TTTTAATTAG
63620009 AAAGAAATTTCAATTAATCAACCT
1 AAAGAAATTTCAATTAATCAACCT
63620033 AAAGAAATTTCAATTAATCAAC
1 AAAGAAATTTCAATTAATCAAC
63620055 ATAGAGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.52, C:0.15, G:0.04, T:0.28
Consensus pattern (24 bp):
AAAGAAATTTCAATTAATCAACCT
Found at i:63628843 original size:40 final size:40
Alignment explanation
Indices: 63628694--63628879 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
63628684 TTGAATGATG
* * * *
63628694 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
63628734 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63628774 CCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63628814 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63628855 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63628880 AACGAGGAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63628897 original size:80 final size:79
Alignment explanation
Indices: 63628747--63628912 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 79
63628737 GGACTAAGAT
** *
63628747 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGACTAAGATCCGAAGGCATTTGAACGAGTGACTA
*
63628812 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
* *
63628827 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTGA-
* *
63628889 CTATATCCGGTTAAATT
63 CTAAATCCGGTTAAATC
63628906 CCGAAGG
1 CCGAAGG
63628913 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
79 16 0.21
80 57 0.76
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCCGGACTAAGATCCGAAGGCATTTGAACGAGTGACTA
AATCCGGTTAAATC
Found at i:63636816 original size:40 final size:40
Alignment explanation
Indices: 63636627--63636852 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
63636617 TTGAATGATG
* * * *
63636627 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
63636667 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63636707 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTGCTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63636747 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63636787 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63636828 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63636853 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 157 0.94
41 9 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63638507 original size:42 final size:43
Alignment explanation
Indices: 63638407--63638507 Score: 98
Period size: 43 Copynumber: 2.4 Consensus size: 43
63638397 CAATGTCAAC
* * *
63638407 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCACT
* * ** * *
63638450 ATCTCAGGTAGGGTCTTACACGAAATCAAATA-CGATGCTGA-T
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGC-CACT
63638492 GTCCCAGACATGGTCT
1 GTCCCAGACATGGTCT
63638508 GTAACGCCCC
Statistics
Matches: 43, Mismatches: 14, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
42 18 0.42
43 25 0.58
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCACT
Found at i:63645595 original size:14 final size:13
Alignment explanation
Indices: 63645567--63645603 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
63645557 ATCCTGGAAT
63645567 ATTAA-AACAATA
1 ATTAAGAACAATA
63645579 ATTAAGAACACATA
1 ATTAAGAACA-ATA
63645593 ATTAAGAACAA
1 ATTAAGAACAA
63645604 ATCAAGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:63654562 original size:14 final size:14
Alignment explanation
Indices: 63654543--63654569 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63654533 TATTAAAATA
63654543 ATAATTAAGAACAC
1 ATAATTAAGAACAC
63654557 ATAATTAAGAACA
1 ATAATTAAGAACA
63654570 AATCAAGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:63656494 original size:47 final size:44
Alignment explanation
Indices: 63656440--63656657 Score: 147
Period size: 47 Copynumber: 4.7 Consensus size: 44
63656430 GGTAAGGTGC
63656440 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGT
1 CGATG-CATGTCCCAGACA-GGTCTTACACTAGCT-ATATCTCATGT
* * * *
63656487 CGATGCCATGACCTAGACATGGTCTTACACTAACTATCATCCCATAG-
1 CGATG-CATGTCCCAGACA-GGTCTTACACTAGCTAT-ATCTCAT-GT
* * * * *
63656534 CAAATGCATGTCCCAGACATGTCTTACACTGGCTTATTTCTCGAGGT
1 C-GATGCATGTCCCAGACAGGTCTTACACTAGC-TATATCTC-ATGT
* * * *
63656581 CGATGCATGTCCCAGACA--TACTAACACTAGCTCT-TATAATGT
1 CGATGCATGTCCCAGACAGGT-CTTACACTAGCTATATCTCATGT
* *
63656623 GGCTGATGTATGTCCCAGACAGGTCTTACAGTAGC
1 --C-GATGCATGTCCCAGACAGGTCTTACACTAGC
63656658 CCACAATCAT
Statistics
Matches: 135, Mismatches: 24, Indels: 25
0.73 0.13 0.14
Matches are distributed among these distances:
42 3 0.02
43 2 0.01
44 4 0.03
45 25 0.19
46 42 0.31
47 55 0.41
48 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (44 bp):
CGATGCATGTCCCAGACAGGTCTTACACTAGCTATATCTCATGT
Found at i:63667475 original size:47 final size:47
Alignment explanation
Indices: 63667308--63667484 Score: 160
Period size: 47 Copynumber: 3.7 Consensus size: 47
63667298 GATGTGTCAG
* * *
63667308 TGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGA-GAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAC-TAG--ATG-GATGAGCCAA
* * * * * *
63667358 TGTAAGAGCATGTCTGGGACATGTCGTCGACCTCGATTTCGAT-AGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CTAGA--TGGATGAGCCAA
* *
63667407 TGTAAGACCATGTCTGAGACATGGCATCGACTTGATGGATGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACTAGATGGATGAGCCAA
* *
63667454 TGTAAGACCATGCCTGGGACATAGCATCGAC
1 TGTAAGACCATGTCTGGGACATGGCATCGAC
63667485 ATTATACCCT
Statistics
Matches: 103, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
46 4 0.04
47 33 0.32
48 5 0.05
49 31 0.30
50 29 0.28
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTAGATGGATGAGCCAA
Found at i:63671529 original size:46 final size:45
Alignment explanation
Indices: 63671479--63671654 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
63671469 TGGTTGAGCA
*
63671479 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
63671525 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
63671572 TCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
63671618 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63671655 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:63671635 original size:93 final size:93
Alignment explanation
Indices: 63671476--63671646 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
63671466 GGATGGTTGA
* * *
63671476 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63671541 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
63671569 GCATCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63671634 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63671647 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:63675528 original size:40 final size:39
Alignment explanation
Indices: 63675454--63675663 Score: 253
Period size: 40 Copynumber: 5.3 Consensus size: 39
63675444 CCTTCGAAAT
* * *
63675454 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATAT-AGCACTAGCACAAATGCCTTCGGGTC
* * *
63675492 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-CACTAGCACAAATGCCTTCGGGTC
*
63675532 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAG-CACTAGCACAAATGCCTTCGGGTC
* *
63675572 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGC-ACTAGCACAAATGCCTTCGGGTC
* * * *
63675612 TTAGTCCGGATATAGCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGCACTAGCACAAATGCCTTCGGGTC
63675651 TTAGCCCGGATAT
1 TTAGCCCGGATAT
63675664 CATTCGAATA
Statistics
Matches: 148, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
38 4 0.03
39 46 0.31
40 98 0.66
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATAGCACTAGCACAAATGCCTTCGGGTC
Found at i:63678598 original size:46 final size:46
Alignment explanation
Indices: 63678548--63678669 Score: 217
Period size: 46 Copynumber: 2.7 Consensus size: 46
63678538 CTCGTAGCTG
* *
63678548 ATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATGTGGCTA
1 ATGCATGTCCCAGACACGTCTTACACTAGCTCTCATAATGTGGCTA
63678594 ATGCATGTCCCAGACACGTCTTACACTAGCTCTCATAATGTGGCTA
1 ATGCATGTCCCAGACACGTCTTACACTAGCTCTCATAATGTGGCTA
*
63678640 ATGCATGTCCTAGACACGTCTTACACTAGC
1 ATGCATGTCCCAGACACGTCTTACACTAGC
63678670 CCACAATGAC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACACGTCTTACACTAGCTCTCATAATGTGGCTA
Found at i:63680366 original size:6 final size:6
Alignment explanation
Indices: 63680351--63680410 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
63680341 AAATAGACAT
* * *
63680351 AAAATGA AAAATA AAAAT- AAAA-G AAGATA AAAATA AAAATA AACATA
1 AAAAT-A AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
63680398 AACATA AAAATA A
1 AAAATA AAAATA A
63680411 TCGGACTCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
5 7 0.15
6 34 0.74
7 5 0.11
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:63680370 original size:18 final size:18
Alignment explanation
Indices: 63680339--63680406 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
63680329 AAATAGGAAA
* *
63680339 AAAAATAGACATAAAATG
1 AAAAATAAAAATAAAATG
63680357 AAAAATAAAAATAAAA-G
1 AAAAATAAAAATAAAATG
*
63680374 -AAGATAAAAATAAAAAT-
1 AAAAATAAAAAT-AAAATG
* *
63680391 AAACATAAACATAAAA
1 AAAAATAAAAATAAAA
63680407 ATAATCGGAC
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
16 10 0.24
17 9 0.21
18 23 0.55
ACGTcount: A:0.75, C:0.04, G:0.06, T:0.15
Consensus pattern (18 bp):
AAAAATAAAAATAAAATG
Found at i:63687004 original size:52 final size:50
Alignment explanation
Indices: 63686908--63687039 Score: 156
Period size: 52 Copynumber: 2.6 Consensus size: 50
63686898 GTTGTGAGAA
* * **
63686908 CACATGTGTAGTACTATGTGCAGGCTACTATGTATTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTATACAAAATGG--TTAGGT
* * * *
63686960 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTATACAAAATGGTTAGGT
* *
63687010 CGCATGTGTAGTACTAAGTACAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
63687040 TGCTTACCCA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
50 33 0.48
52 36 0.52
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTATACAAAATGGTTAGGT
Found at i:63687115 original size:51 final size:50
Alignment explanation
Indices: 63686908--63687127 Score: 174
Period size: 51 Copynumber: 4.3 Consensus size: 50
63686898 GTTGTGAGAA
* * * *
63686908 CACATGTGTAGTACTATGTGCAGGCTACTATGTATTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGT-GTAAAAATAGTTTT-GGT
* * * * * *
63686960 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-AAAATAGTTTTGGT
* * ** * * *
63687010 CGCATGTGTAGTACTAAGTACAGGCTACTATGCT-TACCCAATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG-TGTA-AAAATAGTTTTGGT
* * *
63687061 CACATGTATGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGTTTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAAAA-ATAGTTTTGGT
* *
63687112 CACAAGTGTGGTACTA
1 CACATGTGTAGTACTA
63687128 TGTGAAAGCC
Statistics
Matches: 133, Mismatches: 30, Indels: 11
0.76 0.17 0.06
Matches are distributed among these distances:
50 39 0.29
51 61 0.46
52 33 0.25
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAAAAATAGTTTTGGT
Found at i:63687190 original size:51 final size:51
Alignment explanation
Indices: 63687072--63687190 Score: 125
Period size: 51 Copynumber: 2.3 Consensus size: 51
63687062 ACATGTATGG
* * * * *
63687072 TACTAAGTGCAGGCCACTATGTGTAAAAGATAGTTTTGGTCACAAGTGTGG
1 TACTATGTGCAGGCCACTATGTGTAAAAGATAGCTTTGCTCACAAGGGTGA
* * * *
63687123 TACTATGTGAAAGCCACTTTGTG-AAGAAGGTAGCTTTGACT-ACAAGGGTGA
1 TACTATGTGCAGGCCACTATGTGTAA-AAGATAGCTTTG-CTCACAAGGGTGA
63687174 TACTATGTGCAGGCCAC
1 TACTATGTGCAGGCCAC
63687191 CGGGCATCCG
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
50 2 0.04
51 52 0.95
52 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (51 bp):
TACTATGTGCAGGCCACTATGTGTAAAAGATAGCTTTGCTCACAAGGGTGA
Found at i:63691955 original size:22 final size:22
Alignment explanation
Indices: 63691927--63691969 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
63691917 GACTACGCGA
63691927 TCTGAGCTCATGAGT-TATGTGG
1 TCTGAGCTCATGA-TATATGTGG
63691949 TCTGAGCTCATGATATATGTG
1 TCTGAGCTCATGATATATGTG
63691970 ATACATGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.37
Consensus pattern (22 bp):
TCTGAGCTCATGATATATGTGG
Found at i:63696230 original size:46 final size:46
Alignment explanation
Indices: 63696075--63696258 Score: 151
Period size: 46 Copynumber: 4.0 Consensus size: 46
63696065 AGATATGTGC
* * * * **
63696075 GCCAGTGTTAGACATGTCTGGGACATGCATCGGCCAC-ATAATGAGA
1 GCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTTA
*** * *
63696121 GCCAATGTAAGACCATGTCTGGGACATGGCATCGATATTGAGACAAG-T-
1 GCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAG--ATGTTA
* *
63696169 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
* *
63696215 GCCAATGTCAGACATGTCTGGGACATGCGTCGG-CTACGAGATGT
1 GCCAATGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGT
63696259 GCTAGTGTGA
Statistics
Matches: 109, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
44 2 0.02
45 3 0.03
46 57 0.52
47 28 0.26
48 16 0.15
49 1 0.01
50 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
Found at i:63703791 original size:11 final size:10
Alignment explanation
Indices: 63703750--63703794 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 10
63703740 TTATTCTAGA
63703750 AAATTTTTTT
1 AAATTTTTTT
*
63703760 AACTTTTTTT
1 AAATTTTTTT
*
63703770 ATATATTTTTT
1 AAAT-TTTTTT
63703781 AGAATTTTTTT
1 A-AATTTTTTT
63703792 AAA
1 AAA
63703795 AAAATTAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 13 0.45
11 14 0.48
12 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (10 bp):
AAATTTTTTT
Found at i:63703823 original size:19 final size:18
Alignment explanation
Indices: 63703783--63703825 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
63703773 TATTTTTTAG
*
63703783 AATTTTTTTAAAAAAATT
1 AATTTTTTTAAAAAAATA
*
63703801 AATTTTTTTAAAAGATATA
1 AATTTTTTTAAAA-AAATA
63703820 AATTTT
1 AATTTT
63703826 GGAATTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
AATTTTTTTAAAAAAATA
Found at i:63703851 original size:19 final size:19
Alignment explanation
Indices: 63703816--63703872 Score: 73
Period size: 18 Copynumber: 3.1 Consensus size: 19
63703806 TTTTAAAAGA
*
63703816 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
63703834 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
63703852 TAGAAATTATTTTGAATTTT
1 TATAAA-TATTTTGAATTTT
63703872 T
1 T
63703873 GTAATTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 15 0.44
19 15 0.44
20 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:63703878 original size:19 final size:19
Alignment explanation
Indices: 63703821--63703878 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
63703811 AAAGATATAA
* *
63703821 ATTTTGGAATTTTTATAAAT
1 ATTTT-GAATTTTTGTAATT
* *
63703841 ATTTTGAATTTTAGAAATT
1 ATTTTGAATTTTTGTAATT
63703860 ATTTTGAATTTTTGTAATT
1 ATTTTGAATTTTTGTAATT
63703879 TTTGTTGAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 27 0.84
20 5 0.16
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (19 bp):
ATTTTGAATTTTTGTAATT
Found at i:63705089 original size:7 final size:6
Alignment explanation
Indices: 63705074--63705109 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
63705064 AAGTAAAATA
63705074 TTATTT TTATTTT TTATTT TTATTT TTATTT TTATT
1 TTATTT TTA-TTT TTATTT TTATTT TTATTT TTATT
63705110 GTTAAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:63706146 original size:28 final size:28
Alignment explanation
Indices: 63706106--63706163 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
63706096 TTTCTGCTTT
63706106 TGACTACTCTATTTAGGTCTATCCACTA
1 TGACTACTCTATTTAGGTCTATCCACTA
63706134 TGACTACTCTATTTAGGTCTATCCACTA
1 TGACTACTCTATTTAGGTCTATCCACTA
63706162 TG
1 TG
63706164 TATAGCAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (28 bp):
TGACTACTCTATTTAGGTCTATCCACTA
Found at i:63709401 original size:20 final size:19
Alignment explanation
Indices: 63709351--63709406 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
63709341 TGGGTATCAA
63709351 AATATTTATCAATATTTTT
1 AATATTTATCAATATTTTT
* *
63709370 AACACTTAATCAATATTTTT
1 AATA-TTTATCAATATTTTT
63709390 AAGTATTTATCAATATT
1 AA-TATTTATCAATATT
63709407 GATAATGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
19 3 0.10
20 27 0.87
21 1 0.03
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (19 bp):
AATATTTATCAATATTTTT
Found at i:63709984 original size:17 final size:16
Alignment explanation
Indices: 63709962--63709993 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
63709952 ATCATATGTA
63709962 TAATAATTATATAAATT
1 TAATAATTATA-AAATT
63709979 TAATAATTATAAAAT
1 TAATAATTATAAAAT
63709994 CTAGAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAATAATTATAAAATT
Found at i:63711322 original size:18 final size:18
Alignment explanation
Indices: 63711299--63711347 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
63711289 ATTTTATATT
63711299 TTTAAAATTAATTTTTAA
1 TTTAAAATTAATTTTTAA
* *
63711317 TTTAAAA-AATATTTTTTA
1 TTTAAAATTA-ATTTTTAA
*
63711335 TTTAAATTTAATT
1 TTTAAAATTAATT
63711348 ACAAAAATCC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 23 0.92
19 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTAAAATTAATTTTTAA
Found at i:63711332 original size:19 final size:19
Alignment explanation
Indices: 63711287--63711340 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
63711277 TTTTTAATTG
* * *
63711287 ATATTTTATATTTTTAAAA
1 ATATTTTTTAATTTAAAAA
* *
63711306 TTAATTTTTAATTTAAAAA
1 ATATTTTTTAATTTAAAAA
63711325 ATATTTTTT-ATTTAAA
1 ATATTTTTTAATTTAAA
63711341 TTTAATTACA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATTTTTTAATTTAAAAA
Found at i:63712157 original size:28 final size:28
Alignment explanation
Indices: 63712116--63712182 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
63712106 ATCTCTACAG
*
63712116 AAAATAAAAGAGGATTTAAATTCAATTA
1 AAAATAAAATAGGATTTAAATTCAATTA
* **
63712144 AAAATAAAATAGGATTTTAATTTGATTA
1 AAAATAAAATAGGATTTAAATTCAATTA
63712172 AAAATAAAATA
1 AAAATAAAATA
63712183 AAATCAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.31
Consensus pattern (28 bp):
AAAATAAAATAGGATTTAAATTCAATTA
Found at i:63712202 original size:15 final size:16
Alignment explanation
Indices: 63712172--63712206 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
63712162 AATTTGATTA
63712172 AAAATAAAATAAAATC
1 AAAATAAAATAAAATC
*
63712188 AAAATAACA-AAAATC
1 AAAATAAAATAAAATC
63712203 AAAA
1 AAAA
63712207 AAATCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (16 bp):
AAAATAAAATAAAATC
Found at i:63712207 original size:16 final size:17
Alignment explanation
Indices: 63712171--63712207 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
63712161 TAATTTGATT
63712171 AAAAATAAAATAAAATC
1 AAAAATAAAATAAAATC
*
63712188 -AAAATAACA-AAAATC
1 AAAAATAAAATAAAATC
63712203 AAAAA
1 AAAAA
63712208 AATCAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAATAAAATAAAATC
Found at i:63713267 original size:45 final size:44
Alignment explanation
Indices: 63713202--63713288 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 44
63713192 ATTAGTAGCA
*
63713202 TACATATCCAAACTAACTAGAATAAATCACTAAAAACATGTTCT
1 TACATATCAAAACTAACTAGAATAAATCACTAAAAACATGTTCT
* *
63713246 TACATATCAAAAATTAACTAGAATAAATCACTAAAAATATGTT
1 TACATATC-AAAACTAACTAGAATAAATCACTAAAAACATGTT
63713289 GATTAAGCGC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 8 0.21
45 31 0.79
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.29
Consensus pattern (44 bp):
TACATATCAAAACTAACTAGAATAAATCACTAAAAACATGTTCT
Found at i:63716268 original size:23 final size:22
Alignment explanation
Indices: 63716232--63716277 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
63716222 AATAAAATAA
* *
63716232 TAAAATAATCATAAATATCTTAT
1 TAAAATAATAATAAA-ATATTAT
*
63716255 TAAAATATTAATAAAATATTAT
1 TAAAATAATAATAAAATATTAT
63716277 T
1 T
63716278 TATCTAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAAATAATAATAAAATATTAT
Found at i:63719187 original size:26 final size:26
Alignment explanation
Indices: 63719158--63719215 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
63719148 TGATACAAAT
63719158 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
63719184 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
63719210 TGATAA
1 TGATAA
63719216 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:63724326 original size:131 final size:131
Alignment explanation
Indices: 63724064--63724323 Score: 382
Period size: 131 Copynumber: 2.0 Consensus size: 131
63724054 AATTTAGAGA
* * * * *
63724064 ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCTAGCAC
1 ACATGAGTCAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATCACAACCCAGCAC
* * *
63724129 GATAGGGCACAGTTCCTCGAATTGCCAAACATCGAGTATTACCTTTGTTTTGAAGAGTTTTTAAA
66 GATAGAGCACAGTTCCTCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAA
63724194 G
131 G
* *
63724195 ACATGAGTCAAATTCCAAAGGAATATTCAATTGTTTTGAACAAACGGGAAATCACAACCCAGCAC
1 ACATGAGTCAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATCACAACCCAGCAC
*
63724260 GATAGAGCAC-GATT-CTCGAATTGCCAAACATCGAGTATTGCCTTCGTTTT-AGAGAATTTTTA
66 GATAGAGCACAG-TTCCTCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGA-AGAATTTTTA
63724322 AA
129 AA
63724324 AGAATACTTA
Statistics
Matches: 116, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
129 1 0.01
130 46 0.40
131 69 0.59
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (131 bp):
ACATGAGTCAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATCACAACCCAGCAC
GATAGAGCACAGTTCCTCGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAGAATTTTTAAA
G
Found at i:63726818 original size:18 final size:18
Alignment explanation
Indices: 63726797--63726892 Score: 56
Period size: 17 Copynumber: 5.4 Consensus size: 18
63726787 AAAAACTATT
63726797 TAAAATTTCAAAATATAA
1 TAAAATTTCAAAATATAA
* * *
63726815 T-AAACTT-AAAAAATAT
1 TAAAATTTCAAAATATAA
* *
63726831 TAAAAATTCAAAAAAT-A
1 TAAAATTTCAAAATATAA
* *
63726848 TAAAAGTTTCCAGATATATA
1 TAAAA-TTTCAAAATATA-A
* * *
63726868 TAAAAATTCAAGATATTA
1 TAAAATTTCAAAATATAA
63726886 -AAAATTT
1 TAAAATTT
63726893 AATACACATT
Statistics
Matches: 60, Mismatches: 13, Indels: 11
0.71 0.15 0.13
Matches are distributed among these distances:
16 8 0.13
17 21 0.35
18 16 0.27
19 9 0.15
20 6 0.10
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (18 bp):
TAAAATTTCAAAATATAA
Found at i:63726824 original size:35 final size:33
Alignment explanation
Indices: 63726785--63726851 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
63726775 TTCTAAAATT
* * *
63726785 TTAAAAACTATTTAAAATTTCAAAATATAATAAAC
1 TTAAAAAATA-TTAAAAATTCAAAAAAT-ATAAAC
63726820 TTAAAAAATATTAAAAATTCAAAAAATATAAA
1 TTAAAAAATATTAAAAATTCAAAAAATATAAA
63726852 AGTTTCCAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 15 0.52
35 9 0.31
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (33 bp):
TTAAAAAATATTAAAAATTCAAAAAATATAAAC
Found at i:63727952 original size:28 final size:28
Alignment explanation
Indices: 63727912--63727968 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
63727902 TTCAGAACAA
63727912 ATTTAATATTCCAACATCAATTCCACAT
1 ATTTAATATTCCAACATCAATTCCACAT
63727940 ATTTAATATTCCAACATCAATTCCACAT
1 ATTTAATATTCCAACATCAATTCCACAT
63727968 A
1 A
63727969 CTCATGGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (28 bp):
ATTTAATATTCCAACATCAATTCCACAT
Found at i:63732545 original size:33 final size:33
Alignment explanation
Indices: 63732502--63732576 Score: 96
Period size: 33 Copynumber: 2.3 Consensus size: 33
63732492 TAATACGCTT
* * *
63732502 GATTTGCAATAGCAGATACAACAGCAAACTGTA
1 GATTTCCAATAGCAAATACAACAGCAAACTCTA
* * *
63732535 GATTTCCAATAGCAAATATAACGGCAAACTCTT
1 GATTTCCAATAGCAAATACAACAGCAAACTCTA
63732568 GATTTCCAA
1 GATTTCCAA
63732577 AATGAAACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (33 bp):
GATTTCCAATAGCAAATACAACAGCAAACTCTA
Found at i:63733610 original size:21 final size:21
Alignment explanation
Indices: 63733586--63733626 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
63733576 TGACAACATA
63733586 AGTGAAATCTTGAGCGTAAAT
1 AGTGAAATCTTGAGCGTAAAT
63733607 AGTGAAATCTTGAGCGTAAA
1 AGTGAAATCTTGAGCGTAAA
63733627 CAGTCTTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (21 bp):
AGTGAAATCTTGAGCGTAAAT
Found at i:63734106 original size:17 final size:16
Alignment explanation
Indices: 63734066--63734107 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
63734056 GCAACCTAAT
63734066 TTTTTATTTTTCTTTA
1 TTTTTATTTTTCTTTA
63734082 TTTATTATTTTAT-TTTA
1 TTT-TTATTTT-TCTTTA
63734099 TTATTTATT
1 TT-TTTATT
63734108 ACTTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 18 0.78
18 2 0.09
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTATTTTTCTTTA
Found at i:63734117 original size:20 final size:20
Alignment explanation
Indices: 63734079--63734117 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
63734069 TTATTTTTCT
*
63734079 TTATTTATTATTTTATTTTA
1 TTATTTATTACTTTATTTTA
*
63734099 TTATTTATTACTTTCTTTT
1 TTATTTATTACTTTATTTT
63734118 GTTTGGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (20 bp):
TTATTTATTACTTTATTTTA
Found at i:63734624 original size:13 final size:13
Alignment explanation
Indices: 63734608--63734649 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
63734598 TTTTTCTAAA
63734608 ACATTTTTCTTTC
1 ACATTTTTCTTTC
* *
63734621 ACATATTTGTTT-
1 ACATTTTTCTTTC
*
63734633 TCATTTTTCTTTC
1 ACATTTTTCTTTC
63734646 ACAT
1 ACAT
63734650 CGAGAACAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.19, C:0.19, G:0.02, T:0.60
Consensus pattern (13 bp):
ACATTTTTCTTTC
Found at i:63738727 original size:26 final size:25
Alignment explanation
Indices: 63738658--63738730 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 25
63738648 ATTAATTTCC
*
63738658 TCAAAATTTTACTAGGGACAAAATCG
1 TCAAAATTTTACTAGGG-TAAAATCG
* * * *
63738684 TCAAATTTTTATTGGGGTAAAATTG
1 TCAAAATTTTACTAGGGTAAAATCG
63738709 TCAAAAATTTTACTAGGGTAAA
1 TC-AAAATTTTACTAGGGTAAA
63738731 TTTGGGATGA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 8 0.21
26 30 0.79
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (25 bp):
TCAAAATTTTACTAGGGTAAAATCG
Found at i:63740016 original size:27 final size:27
Alignment explanation
Indices: 63739986--63740041 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
63739976 CTGCCACGTC
63739986 ATGTTGGTGGACAATAGGACATTTTCT
1 ATGTTGGTGGACAATAGGACATTTTCT
63740013 ATGTTGGTGGACAATAGGACATTTTCT
1 ATGTTGGTGGACAATAGGACATTTTCT
63740040 AT
1 AT
63740042 AAATACACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.38
Consensus pattern (27 bp):
ATGTTGGTGGACAATAGGACATTTTCT
Found at i:63743005 original size:31 final size:31
Alignment explanation
Indices: 63742936--63743013 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
63742926 TTTTAAAATA
* * *
63742936 ACTAATAATCCAATAACTTAAATAAAAAGTT
1 ACTAATAATTCAATGACTTAAATAAAAACTT
* * *
63742967 ACAAATAATTCAATGAGTTAAATGAAAACTT
1 ACTAATAATTCAATGACTTAAATAAAAACTT
*
63742998 TCTAATAACTT-AATGA
1 ACTAATAA-TTCAATGA
63743014 TATTTTATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
31 36 0.95
32 2 0.05
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (31 bp):
ACTAATAATTCAATGACTTAAATAAAAACTT
Found at i:63749514 original size:2 final size:2
Alignment explanation
Indices: 63749507--63749567 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
63749497 AAATTAACTT
63749507 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
63749549 AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG A
63749568 AGCTTGCAGA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:63750931 original size:16 final size:18
Alignment explanation
Indices: 63750892--63750925 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63750882 AAAGTTTATA
63750892 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
63750909 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
63750926 AATTTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:63753805 original size:46 final size:46
Alignment explanation
Indices: 63753752--63753923 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
63753742 ACTTGTGTGT
*
63753752 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-ATTATGGAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATGA-GATGGAA
* * * * *
63753798 GCTAGTGTAAGACCATATTTGAGACATAGCATCGG-CACTGAGA-CGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-TGAGATGGA-A
* *
63753846 GCTACTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-GAGATGGAA
63753892 GCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG
63753924 ACTACGAGAT
Statistics
Matches: 104, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
45 1 0.01
46 54 0.52
47 28 0.27
48 20 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATGAGATGGAA
Found at i:63753970 original size:94 final size:95
Alignment explanation
Indices: 63753858--63754067 Score: 259
Period size: 94 Copynumber: 2.2 Consensus size: 95
63753848 TACTGTAAGA
* * *
63753858 CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCTAGTGTAAGA-CATGTCTGGGACAT-GC
1 CATGTCTGGGACATGGCATCGGCCTCGAGATATAAGCCAGTGTAAGACCATGTCTAGGACATGGC
*
63753920 ATCGACTACGAGATGATG-GTCAATGTAAAAC
66 ATCGACT-CGAGAT-ATGAGCCAATGTAAAAC
* * * * *
63753951 CATGTTTGGGACATGGCATC-GACTTGAGATATGAGCCAGTGTAAGACCATGTCTAGGACATGGG
1 CATGTCTGGGACATGGCATCGGCCTCGAGATATAAGCCAGTGTAAGACCATGTCTAGGACATGGC
* *
63754015 ATCGACTTGAGATATGAGCCAATGTAAGAC
66 ATCGACTCGAGATATGAGCCAATGTAAAAC
*
63754045 CATGTCTAGGACATGGCATCGGC
1 CATGTCTGGGACATGGCATCGGC
63754068 ATCTTACCCA
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
93 37 0.38
94 52 0.53
95 9 0.09
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
CATGTCTGGGACATGGCATCGGCCTCGAGATATAAGCCAGTGTAAGACCATGTCTAGGACATGGC
ATCGACTCGAGATATGAGCCAATGTAAAAC
Found at i:63753980 original size:47 final size:47
Alignment explanation
Indices: 63753851--63754065 Score: 233
Period size: 47 Copynumber: 4.6 Consensus size: 47
63753841 CGAGTGCTAC
* * * * * * *
63753851 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCTAG
1 TGTAAGACCATGTCTAGGACATGGCATC-GACTTGAGATATGAGCCAA
* * *
63753897 TGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGATGATG-GTCAA
1 TGTAAGACCATGTCTAGGACATGGCATCGACT-TGAGAT-ATGAGCCAA
* * * *
63753943 TGTAAAACCATGTTTGGGACATGGCATCGACTTGAGATATGAGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATATGAGCCAA
*
63753990 TGTAAGACCATGTCTAGGACATGGGATCGACTTGAGATATGAGCCAA
1 TGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATATGAGCCAA
63754037 TGTAAGACCATGTCTAGGACATGGCATCG
1 TGTAAGACCATGTCTAGGACATGGCATCG
63754066 GCATCTTACC
Statistics
Matches: 147, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
45 3 0.02
46 43 0.29
47 92 0.63
48 9 0.06
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATATGAGCCAA
Found at i:63760860 original size:21 final size:20
Alignment explanation
Indices: 63760831--63760869 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
63760821 AAAAGACCAA
*
63760831 ATATATTTAAATATAAAATGT
1 ATATATTT-AATAAAAAATGT
*
63760852 ATATTTTTAATAAAAAAT
1 ATATATTTAATAAAAAAT
63760870 TAAGTTCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (20 bp):
ATATATTTAATAAAAAATGT
Found at i:63762107 original size:11 final size:11
Alignment explanation
Indices: 63762090--63762137 Score: 87
Period size: 11 Copynumber: 4.4 Consensus size: 11
63762080 AAAAGAGAAT
63762090 AAAGAAGAAAG
1 AAAGAAGAAAG
*
63762101 GAAGAAGAAAG
1 AAAGAAGAAAG
63762112 AAAGAAGAAAG
1 AAAGAAGAAAG
63762123 AAAGAAGAAAG
1 AAAGAAGAAAG
63762134 AAAG
1 AAAG
63762138 GTAAAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (11 bp):
AAAGAAGAAAG
Found at i:63762114 original size:4 final size:4
Alignment explanation
Indices: 63762090--63762137 Score: 59
Period size: 4 Copynumber: 13.0 Consensus size: 4
63762080 AAAAGAGAAT
*
63762090 AAAG -AAG AAAG GAAG -AAG AAAG AAAG -AAG AAAG AAAG -AAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
63762134 AAAG
1 AAAG
63762138 GTAAAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
3 12 0.31
4 27 0.69
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:63762114 original size:15 final size:15
Alignment explanation
Indices: 63762085--63762137 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
63762075 ATAGCAAAAG
*
63762085 AGAATAAAG-AAGAA
1 AGAAGAAAGAAAGAA
63762099 AGGAAG-AAGAAAGAA
1 A-GAAGAAAGAAAGAA
63762114 AGAAGAAAGAAAG-A
1 AGAAGAAAGAAAGAA
63762128 AGAAAGAAAG
1 AG-AAGAAAG
63762138 GTAAAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 11 0.32
15 23 0.68
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (15 bp):
AGAAGAAAGAAAGAA
Found at i:63762195 original size:11 final size:11
Alignment explanation
Indices: 63762171--63762204 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
63762161 AAGAGAGCAG
63762171 AGAAAGAAAGAA
1 AGAAAG-AAGAA
*
63762183 AGAAAGTAGAA
1 AGAAAGAAGAA
63762194 AGAAAGAAGAA
1 AGAAAGAAGAA
63762205 GCAAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (11 bp):
AGAAAGAAGAA
Found at i:63764935 original size:21 final size:21
Alignment explanation
Indices: 63764901--63764943 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
63764891 GTATACGGTC
*
63764901 AAAATGTTTATGAAGTGAAAAA
1 AAAATGTGTATGAA-TGAAAAA
*
63764923 AAAATGTGT-TGAATGACAAA
1 AAAATGTGTATGAATGAAAAA
63764943 A
1 A
63764944 TGATGACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.53, C:0.02, G:0.19, T:0.26
Consensus pattern (21 bp):
AAAATGTGTATGAATGAAAAA
Found at i:63765502 original size:27 final size:27
Alignment explanation
Indices: 63765442--63765593 Score: 205
Period size: 27 Copynumber: 5.6 Consensus size: 27
63765432 TAAATTGTAC
*
63765442 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
*
63765470 AACACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
63765497 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
63765524 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
63765552 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
63765579 AACACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63765594 GACTTAATAT
Statistics
Matches: 111, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
27 69 0.62
28 42 0.38
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:63765508 original size:55 final size:55
Alignment explanation
Indices: 63765442--63765593 Score: 225
Period size: 55 Copynumber: 2.8 Consensus size: 55
63765432 TAAATTGTAC
63765442 AGCACTAAGTGTGCGAGTTGGACTATGTAACACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTT-GACTATGTAACACTAAGTGTGCGAGATTGACTATGT
* * * * *
63765497 TGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAACACTAAGTGTGCGAGATTGACTATGT
* *
63765552 AGCACTAAGTGTGCGAGTTGACTATATAACACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAACACTAAGTGTGCG
63765594 GACTTAATAT
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 23 0.27
55 63 0.73
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAACACTAAGTGTGCGAGATTGACTATGT
Found at i:63765590 original size:82 final size:82
Alignment explanation
Indices: 63765442--63765593 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 82
63765432 TAAATTGTAC
* **
63765442 AGCACTAAGTGTGCGAGTTGGACTATGTAACACTAAGTGTGCGAATTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAACACTAAGTGTGCGAATTGACTATATAACACTAAGT
63765507 GTGCGAATTGACTATGT
66 GTGCGAATTGACTATGT
* * * * *
63765524 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATATAACACTGAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAACACTAAGTGTGCGAATTGACTATATAACACTAAGT
63765589 GTGCG
66 GTGCG
63765594 GACTTAATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 62 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTGGACTATGTAACACTAAGTGTGCGAATTGACTATATAACACTAAGT
GTGCGAATTGACTATGT
Found at i:63769506 original size:21 final size:20
Alignment explanation
Indices: 63769482--63769520 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
63769472 TTTACCTACA
63769482 TAAAAAACAAAAAATTTATGT
1 TAAAAAA-AAAAAATTTATGT
* *
63769503 TAAAATAATAAAATTTAT
1 TAAAAAAAAAAAATTTAT
63769521 CAAAACAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (20 bp):
TAAAAAAAAAAAATTTATGT
Found at i:63771498 original size:47 final size:47
Alignment explanation
Indices: 63771442--63771536 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
63771432 ATTTAAAAAT
63771442 TATAAAAATATAAAAATAAAAAATTAGAATAAAGAATAAATGAGTTA
1 TATAAAAATATAAAAATAAAAAATTAGAATAAAGAATAAATGAGTTA
63771489 TATAAAAATATAAAAATAAAAAATTAGAATAAAGAATAAATGAGTTA
1 TATAAAAATATAAAAATAAAAAATTAGAATAAAGAATAAATGAGTTA
63771536 T
1 T
63771537 CATATTTTAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.26
Consensus pattern (47 bp):
TATAAAAATATAAAAATAAAAAATTAGAATAAAGAATAAATGAGTTA
Found at i:63783689 original size:16 final size:16
Alignment explanation
Indices: 63783668--63783707 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
63783658 GGGATTAGGG
63783668 TTAGGGTTTTTATGGT
1 TTAGGGTTTTTATGGT
63783684 TTAGGGTTTTTATGGT
1 TTAGGGTTTTTATGGT
*
63783700 TCAGGGTT
1 TTAGGGTT
63783708 AGGATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.12, C:0.03, G:0.33, T:0.53
Consensus pattern (16 bp):
TTAGGGTTTTTATGGT
Found at i:63783777 original size:26 final size:26
Alignment explanation
Indices: 63783746--63783809 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
63783736 AAGGGTTTAG
63783746 TTAATTAAATTAGGGTGTAAGATTAA
1 TTAATTAAATTAGGGTGTAAGATTAA
*
63783772 TTAATTAAATTTGGGTGTAAGATTAA
1 TTAATTAAATTAGGGTGTAAGATTAA
63783798 TTAATTAAATTA
1 TTAATTAAATTA
63783810 AATATTAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (26 bp):
TTAATTAAATTAGGGTGTAAGATTAA
Found at i:63784082 original size:126 final size:126
Alignment explanation
Indices: 63783937--63784195 Score: 340
Period size: 126 Copynumber: 2.1 Consensus size: 126
63783927 TTTTTTGGTT
* * * ** * **
63783937 TTTTTTTCTTCAGTAGTATCT-GGAAAAATTTTTTTAAGAAGAAGTTTCTGAAGAAATAGTATCC
1 TTTTTTTCTACAATAGTATCTAAG-AAAATAATTTTAAGAAGAAGTTTCTGAAAAAATAGTATAA
* * *
63784001 AAAACGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAATGCTCCCATGTGGACGC
65 AAAACGCTTCAAGCAGGATGCACTGTCAACAAAAGTACTGAAAAAAGCTCCCACGTGGACGC
* * * *
63784063 TTTTTTTCTACAATGGTATCTAAGAAAATAATTTTGAGAAGATGTTTCTGAAAAAATAGTGTAAA
1 TTTTTTTCTACAATAGTATCTAAGAAAATAATTTTAAGAAGAAGTTTCTGAAAAAATAGTATAAA
* *
63784128 AAACGCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGC
66 AAACGCTTCAAGCAGGATGCACTGTCAACAAAAGTACTGAAAAAAGCTCCCACGTGGACGC
*
63784189 TCTTTTT
1 TTTTTTT
63784196 GTAATATCCC
Statistics
Matches: 114, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
126 113 0.99
127 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (126 bp):
TTTTTTTCTACAATAGTATCTAAGAAAATAATTTTAAGAAGAAGTTTCTGAAAAAATAGTATAAA
AAACGCTTCAAGCAGGATGCACTGTCAACAAAAGTACTGAAAAAAGCTCCCACGTGGACGC
Found at i:63785279 original size:19 final size:19
Alignment explanation
Indices: 63785257--63785314 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
63785247 AATTTAAGTA
63785257 ATATAATGTTATTTATATG
1 ATATAATGTTATTTATATG
* *
63785276 ATATGATG--A-TTATTATC
1 ATATAATGTTATTTA-TATG
63785293 AT-TAATGTTATTTATATG
1 ATATAATGTTATTTATATG
63785311 ATAT
1 ATAT
63785315 GAAGATTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 7 0.23
17 6 0.20
18 6 0.20
19 11 0.37
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (19 bp):
ATATAATGTTATTTATATG
Found at i:63785299 original size:35 final size:35
Alignment explanation
Indices: 63785260--63785326 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
63785250 TTAAGTAATA
*
63785260 TAATGTTATTTATATGATATGATGATTATTATCAT
1 TAATGTTATTTATATGATATGAAGATTATTATCAT
*
63785295 TAATGTTATTTATATGATATGAAGATTGTTAT
1 TAATGTTATTTATATGATATGAAGATTATTAT
63785327 TATGAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (35 bp):
TAATGTTATTTATATGATATGAAGATTATTATCAT
Found at i:63790266 original size:27 final size:27
Alignment explanation
Indices: 63790226--63790323 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
63790216 CTTTTATTCT
63790226 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
* * *
63790253 ATTA-AAATACTAAAA-A-CAACTTTTATTTT
1 ATTACAAATA-TAAAAGAGTAA--ATTA--TA
63790282 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
63790309 ATTA-AAATATTAAAA
1 ATTACAAATA-TAAAA
63790324 ACAACTTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
25 2 0.04
26 11 0.20
27 22 0.39
29 13 0.23
30 6 0.11
31 2 0.04
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (27 bp):
ATTACAAATATAAAAGAGTAAATTATA
Found at i:63790269 original size:56 final size:56
Alignment explanation
Indices: 63790209--63790341 Score: 248
Period size: 56 Copynumber: 2.4 Consensus size: 56
63790199 TTCCTTATTC
*
63790209 AAAACAACTTTTATTCTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
1 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
*
63790265 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATATTA
1 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
63790321 AAAACAACTTTTATTTTATTA
1 AAAACAACTTTTATTTTATTA
63790342 AATGAAAGAA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.38
Consensus pattern (56 bp):
AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
Found at i:63790334 original size:27 final size:26
Alignment explanation
Indices: 63790248--63790334 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 26
63790238 AAAGAGTAAA
63790248 TTATAATTAAAATACTAAAAACAACTT
1 TTATAATTAAAATA-TAAAAACAACTT
* * *
63790275 TTATTTTATTACAAATATAAAAGAGTAA--A
1 TTA--TAATTA-AAATATAAAA-A-CAACTT
63790304 TTATAATTAAAATATTAAAAACAACTT
1 TTATAATTAAAATA-TAAAAACAACTT
63790331 TTAT
1 TTAT
63790335 TTTATTAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 16
0.68 0.09 0.24
Matches are distributed among these distances:
25 2 0.04
26 6 0.13
27 17 0.37
29 13 0.28
30 6 0.13
31 2 0.04
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.38
Consensus pattern (26 bp):
TTATAATTAAAATATAAAAACAACTT
Found at i:63790758 original size:18 final size:18
Alignment explanation
Indices: 63790737--63790771 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
63790727 AAAAGGAAAC
*
63790737 ATATAAGGGTTAGGATAT
1 ATATAAGGGCTAGGATAT
63790755 ATATAAGGGCTAGGATA
1 ATATAAGGGCTAGGATA
63790772 CGCATCTGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.29, T:0.29
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAT
Found at i:63791399 original size:7 final size:7
Alignment explanation
Indices: 63791389--63791435 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
63791379 TTGTATACAT
63791389 AATACTA
1 AATACTA
63791396 AATACTA
1 AATACTA
63791403 AATACTA
1 AATACTA
63791410 AATACTA
1 AATACTA
*
63791417 AATATTA
1 AATACTA
63791424 AATACTA
1 AATACTA
63791431 AATAC
1 AATAC
63791436 GAAACGATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (7 bp):
AATACTA
Found at i:63792484 original size:49 final size:50
Alignment explanation
Indices: 63792374--63792484 Score: 156
Period size: 47 Copynumber: 2.3 Consensus size: 50
63792364 AAAAAATTAT
**
63792374 AAAATTAAAATTAAAATTGCATAAATGAAAAAAAATATTAAATTGTATTGA
1 AAAATTAAAATTAAAATTGCATAAAT-AAAAAAAATATTAAATACTATTGA
*
63792425 AAAATT--AATTAAAATTGCATAAAT-TAAAAAATATTAAATACTATTGA
1 AAAATTAAAATTAAAATTGCATAAATAAAAAAAATATTAAATACTATTGA
*
63792472 AATATTAAAATTA
1 AAAATTAAAATTA
63792485 TCACTTACCA
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
47 25 0.46
49 23 0.43
51 6 0.11
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (50 bp):
AAAATTAAAATTAAAATTGCATAAATAAAAAAAATATTAAATACTATTGA
Found at i:63792655 original size:10 final size:10
Alignment explanation
Indices: 63792638--63792717 Score: 74
Period size: 10 Copynumber: 7.6 Consensus size: 10
63792628 GTTTTGAAAA
63792638 AATTTGAGAG
1 AATTTGAGAG
*
63792648 AATATGAGAG
1 AATTTGAGAG
63792658 AATTTTTG-GAAG
1 AA--TTTGAG-AG
63792670 AATTTGAGAG
1 AATTTGAGAG
63792680 AATTTGAGAG
1 AATTTGAGAG
63792690 AATTTTTG-GAAG
1 AA--TTTGAG-AG
*
63792702 AATGTGAGAG
1 AATTTGAGAG
63792712 AATTTG
1 AATTTG
63792718 GATAGGAGGA
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
10 39 0.67
11 4 0.07
12 15 0.26
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.33
Consensus pattern (10 bp):
AATTTGAGAG
Found at i:63792665 original size:32 final size:32
Alignment explanation
Indices: 63792629--63792714 Score: 136
Period size: 32 Copynumber: 2.7 Consensus size: 32
63792619 TTAAAGAGAG
* *
63792629 TTTTGAAAAAATTTGAGAGAATATGAGAGAAT
1 TTTTGGAAGAATTTGAGAGAATATGAGAGAAT
*
63792661 TTTTGGAAGAATTTGAGAGAATTTGAGAGAAT
1 TTTTGGAAGAATTTGAGAGAATATGAGAGAAT
*
63792693 TTTTGGAAGAATGTGAGAGAAT
1 TTTTGGAAGAATTTGAGAGAAT
63792715 TTGGATAGGA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.33
Consensus pattern (32 bp):
TTTTGGAAGAATTTGAGAGAATATGAGAGAAT
Found at i:63803716 original size:65 final size:65
Alignment explanation
Indices: 63803628--63803778 Score: 212
Period size: 65 Copynumber: 2.3 Consensus size: 65
63803618 CGGACTATCG
* *
63803628 CAACTCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGACCCTGCATATATTGCGGACATAAACA
1 CAACTCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGACCCTGCATATATTGCAGACACAAACA
* * * * * **
63803693 CAACTCTTTGTGAGCTTCTTGTTATATGATCGGTTGTGATCCTTCATATGTTGCAGACACAAATG
1 CAACTCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGACCCTGCATATATTGCAGACACAAACA
*
63803758 CAGCTCTTTGTGAGCGTCCTG
1 CAACTCTTTGTGAGCGTCCTG
63803779 ATATGGCTCA
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (65 bp):
CAACTCTTTGTGAGCGTCCTGTTATATGATCGGTTGTGACCCTGCATATATTGCAGACACAAACA
Found at i:63803856 original size:26 final size:26
Alignment explanation
Indices: 63803821--63803907 Score: 120
Period size: 26 Copynumber: 3.3 Consensus size: 26
63803811 TATCCGAAGC
*
63803821 TCCTGATTAATGGCTCTTCGTGAGCT
1 TCCTGATTAAAGGCTCTTCGTGAGCT
*
63803847 TCCTGTTTAAAGGCTCTTCGTGAGCT
1 TCCTGATTAAAGGCTCTTCGTGAGCT
* * * *
63803873 TCCTGATTAAAAGTTCTTTGTGAACT
1 TCCTGATTAAAGGCTCTTCGTGAGCT
63803899 TCCTGATTA
1 TCCTGATTA
63803908 TGAATCCTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.40
Consensus pattern (26 bp):
TCCTGATTAAAGGCTCTTCGTGAGCT
Found at i:63805369 original size:17 final size:16
Alignment explanation
Indices: 63805347--63805387 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 16
63805337 GGCCTAAGAT
63805347 ACGGGCGTGTCGATCAC
1 ACGGGCGTGT-GATCAC
63805364 ACGGGC---TGATCAC
1 ACGGGCGTGTGATCAC
63805377 ACGGGCGTGTG
1 ACGGGCGTGTG
63805388 TCCCCTACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 7
0.75 0.00 0.25
Matches are distributed among these distances:
13 12 0.57
14 1 0.05
16 2 0.10
17 6 0.29
ACGTcount: A:0.17, C:0.27, G:0.39, T:0.17
Consensus pattern (16 bp):
ACGGGCGTGTGATCAC
Found at i:63817240 original size:40 final size:40
Alignment explanation
Indices: 63817196--63817344 Score: 262
Period size: 40 Copynumber: 3.7 Consensus size: 40
63817186 GCTACTTGCT
* *
63817196 CAAATGCCTTCGGGACATAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
63817236 CAAATGTCTTCGGGACTTAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63817276 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63817316 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63817345 CATCCGAATA
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63825284 original size:40 final size:40
Alignment explanation
Indices: 63825240--63825388 Score: 280
Period size: 40 Copynumber: 3.7 Consensus size: 40
63825230 GCTACTTGCT
63825240 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63825280 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63825320 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63825360 CAAATGCCTTCGGGACTTAGCCCGATTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63825389 CATCCGAATA
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63828595 original size:27 final size:28
Alignment explanation
Indices: 63828559--63828659 Score: 143
Period size: 27 Copynumber: 3.7 Consensus size: 28
63828549 GGGAATCCTA
* *
63828559 TTGTGACAGAGTCACCAGATACAGATA-
1 TTGTGGCAGAGCCACCAGATACAGATAT
* *
63828586 TTGTGGCAGAGCCACTAGAAACAGATAT
1 TTGTGGCAGAGCCACCAGATACAGATAT
63828614 TTGTGGCAGAGCCACCAGAT-CAGATAT
1 TTGTGGCAGAGCCACCAGATACAGATAT
*
63828641 TTGTGGCAGAGCCATCAGA
1 TTGTGGCAGAGCCACCAGA
63828660 ACGCTTCCTC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 48 0.73
28 18 0.27
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.22
Consensus pattern (28 bp):
TTGTGGCAGAGCCACCAGATACAGATAT
Found at i:63836430 original size:27 final size:27
Alignment explanation
Indices: 63836334--63836447 Score: 92
Period size: 27 Copynumber: 4.2 Consensus size: 27
63836324 AGCATGGCTG
* *
63836334 CCAGAATAGATA-TCGT-GACAGAGTCA
1 CCAGAATAGATATTTGTCG-CAGAGCCA
* *
63836360 CCAGATACAGATATTATG--GCAAAGCCA
1 CCAGA-ATAGATATT-TGTCGCAGAGCCA
* *
63836387 CCAGAAATAGATATTTGTGGTAGAGCCA
1 CCAG-AATAGATATTTGTCGCAGAGCCA
* *
63836415 CCAGATTAGATATTTGTCGCAGAGCAA
1 CCAGAATAGATATTTGTCGCAGAGCCA
63836442 CCAGAA
1 CCAGAA
63836448 CGCTTCCTCC
Statistics
Matches: 70, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
26 7 0.10
27 48 0.69
28 14 0.20
29 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (27 bp):
CCAGAATAGATATTTGTCGCAGAGCCA
Found at i:63863496 original size:38 final size:38
Alignment explanation
Indices: 63863414--63863602 Score: 220
Period size: 38 Copynumber: 4.9 Consensus size: 38
63863404 AAACACAACA
* * * * *
63863414 CCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATA
1 CCAGCACTAAGCCTGCGGGA-TTT-AACCCGGATATAATT
*
63863454 CCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATT
1 CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
* *
63863492 CCAGCACGAAGCTTGCGGGATTTAACCCGGATAT-ATT
1 CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
*
63863529 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATT
1 -CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
*
63863568 CCAGCA-TATAGCCTGCGGGCCTTTAAGCCCGGATA
1 CCAGCACTA-AGCCTGCGGG-ATTTAA-CCCGGATA
63863603 CAATCTCAGC
Statistics
Matches: 131, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
37 4 0.03
38 91 0.69
39 11 0.08
40 25 0.19
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
Found at i:63863546 original size:76 final size:78
Alignment explanation
Indices: 63863414--63863616 Score: 243
Period size: 76 Copynumber: 2.6 Consensus size: 78
63863404 AAACACAACA
* * *
63863414 CCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA
63863479 CCCGGATATAATT
66 CCCGGATATAATT
* * * *
63863492 CCAGCACGAAGCTTGCGGGA-TTT-AACCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAA
1 CCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA
63863555 CCCGGATATAATT
66 CCCGGATATAATT
* * * * * *
63863568 CCAGCA-TATAGCCTGCGGGCCTTTAAGCCCGGATACAAT-CTCAGCACAA
1 CCAGCACGA-AGCCTACGGGACTTTAAACCCAGATATAATAC-CAGCACAA
63863617 TTTATTTTAT
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
75 1 0.01
76 63 0.58
77 7 0.06
78 37 0.34
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (78 bp):
CCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA
CCCGGATATAATT
Found at i:63867938 original size:27 final size:27
Alignment explanation
Indices: 63867907--63868022 Score: 162
Period size: 27 Copynumber: 4.3 Consensus size: 27
63867897 CCCCGATTCA
*
63867907 TAAAATGACCGTAACACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
63867934 TAAAATGACCGTAATACCTCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
63867961 TAAAATGACCGTAAT-GCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * * *
63867987 TACAATGACCGTAATATCCATGTATGG
1 TAAAATGACCGTAATACCCCTGTAGGG
63868014 TAAAATGAC
1 TAAAATGAC
63868023 GATTATGCCC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.29
27 56 0.71
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTGTAGGG
Done.