Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 200 of 316
Found at i:64891685 original size:46 final size:46
Alignment explanation
Indices: 64891619--64891743 Score: 214
Period size: 46 Copynumber: 2.7 Consensus size: 46
64891609 TAGGCATCCG
*
64891619 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCA
1 AGCTCGTTGAGTTGATTCCGAGTTCACTTATAGATGCGAACGCCCA
* *
64891665 AGCTCGTTGATTTGATTCCGAGTTCACTTATAGATGCGAACGCCCG
1 AGCTCGTTGAGTTGATTCCGAGTTCACTTATAGATGCGAACGCCCA
*
64891711 AGCTCGTTGAGTTGATTCTGAGTTCACTTATAG
1 AGCTCGTTGAGTTGATTCCGAGTTCACTTATAG
64891744 GTGGGTTACA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (46 bp):
AGCTCGTTGAGTTGATTCCGAGTTCACTTATAGATGCGAACGCCCA
Found at i:64913808 original size:45 final size:45
Alignment explanation
Indices: 64913744--64913837 Score: 179
Period size: 45 Copynumber: 2.1 Consensus size: 45
64913734 TTAAGATCTT
64913744 ATAATCGTAACTTACTCAATCATAATCTTACCAAGGGTTCATTAC
1 ATAATCGTAACTTACTCAATCATAATCTTACCAAGGGTTCATTAC
*
64913789 ATAATCGTAACTTACTCAATCATAATCTTACCAAGGGTTCGTTAC
1 ATAATCGTAACTTACTCAATCATAATCTTACCAAGGGTTCATTAC
64913834 ATAA
1 ATAA
64913838 CGAGCTCATC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (45 bp):
ATAATCGTAACTTACTCAATCATAATCTTACCAAGGGTTCATTAC
Found at i:64914081 original size:43 final size:42
Alignment explanation
Indices: 64913985--64914103 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 42
64913975 CACACGGTAA
* * *
64913985 CATACCAATGCCATATCCCAGATATGGTCTTACATGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATGAGATAT
* * * *
64914027 CGTATCGATGCCAATATCCTAGCTATGGTCTTACATGA-AGTAT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACATGAGA-TAT
* *
64914070 CATATCAATGCCATATCCCAAAAATGGTCTTACA
1 CATATCAATGCCATATCCCAGATATGGTCTTACA
64914104 CAAAGTCTCA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACATGAGATAT
Found at i:64914099 original size:42 final size:42
Alignment explanation
Indices: 64913985--64914145 Score: 155
Period size: 42 Copynumber: 3.8 Consensus size: 42
64913975 CACACGGTAA
* * *
64913985 CATACCAATGCCATATCCCAGATATGGTCTTACATG-GGATCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACATGAAG-TCT
* * * ** *
64914027 CGTATCGATGCCAATATCCTAGCTATGGTCTTACATGAAGTAT
1 CATATCAATGCC-ATATCCCAAATATGGTCTTACATGAAGTCT
* **
64914070 CATATCAATGCCATATCCCAAAAATGGTCTTACACAAAGTCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACATGAAGTCT
* *
64914112 CATAT-AGATTCCATCTCCCAAATATGGTCTTACA
1 CATATCA-ATGCCATATCCCAAATATGGTCTTACA
64914146 CATAGTCTTA
Statistics
Matches: 97, Mismatches: 19, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
41 1 0.01
42 61 0.63
43 34 0.35
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAAATATGGTCTTACATGAAGTCT
Found at i:64921386 original size:13 final size:13
Alignment explanation
Indices: 64921368--64921394 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64921358 GCTCGATAGG
64921368 GACACGCCCGTGT
1 GACACGCCCGTGT
64921381 GACACGCCCGTGT
1 GACACGCCCGTGT
64921394 G
1 G
64921395 TAATTGCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:64922902 original size:39 final size:39
Alignment explanation
Indices: 64922817--64922996 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
64922807 GCAACTTGTT
* *
64922817 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
*
64922857 CAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
* * *
64922896 CCAATGCCTTCGGG-CTTAGCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
* ** * * *
64922934 CAAATGCCTT-TGGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
64922975 CAAA-GCCTTC-GGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
64922997 GACATCATTC
Statistics
Matches: 119, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
37 2 0.02
38 32 0.27
39 35 0.29
40 42 0.35
41 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:64922934 original size:38 final size:39
Alignment explanation
Indices: 64922817--64922994 Score: 186
Period size: 39 Copynumber: 4.6 Consensus size: 39
64922807 GCAACTTGTT
*
64922817 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCGGATT-TAGTAACTCGCA
* *
64922857 CAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCGGATTTAGTAACTCGCA
* *
64922896 CCAATGCCTTCGGG-CTTAGCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCGGATTTAGTAACTCGCA
* * * * *
64922934 CAAATGCCTT-TGGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCGGATTTAGTAAC-TCGCA
64922975 CAAA-GCCTTC-GGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
64922995 CGGACATCAT
Statistics
Matches: 117, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
37 2 0.02
38 31 0.26
39 38 0.32
40 38 0.32
41 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGATTTAGTAACTCGCA
Found at i:64929954 original size:28 final size:27
Alignment explanation
Indices: 64929891--64930070 Score: 270
Period size: 28 Copynumber: 6.6 Consensus size: 27
64929881 ATAATAAGTC
* * *
64929891 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
64929918 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
64929946 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
64929973 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
64930001 TGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
64930029 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
64930056 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64930071 GCACAATTTA
Statistics
Matches: 145, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
27 67 0.46
28 78 0.54
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:64929961 original size:55 final size:55
Alignment explanation
Indices: 64929891--64930070 Score: 281
Period size: 55 Copynumber: 3.3 Consensus size: 55
64929881 ATAATAAGTC
* * * * *
64929891 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
64929946 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
* *
64930001 TGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACT
64930056 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64930071 GCACAATTTA
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
55 89 0.77
56 27 0.23
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:64930029 original size:83 final size:82
Alignment explanation
Indices: 64929891--64930070 Score: 288
Period size: 83 Copynumber: 2.2 Consensus size: 82
64929881 ATAATAAGTC
* * *
64929891 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
64929956 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
* * *
64929973 CGCACACTTAGTGCTACATAGTCAAACTTGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
64930038 AGTGCTACATAGTCAATT
65 AGTGCTACATAGTCAACT
64930056 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64930071 GCACAATTTA
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
82 20 0.22
83 70 0.78
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:64934335 original size:40 final size:40
Alignment explanation
Indices: 64934272--64934474 Score: 200
Period size: 40 Copynumber: 5.1 Consensus size: 40
64934262 CGAAATTTAA
* * ** *
64934272 CCGGATATAGCAACTTGTTCAAATGCCTTCGGGACATAGC
1 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
** *
64934312 CCGGTTATAGTAACTCCCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
*
64934352 CCGGATT-TAGTAACTTGCACCAATGCCTTCGGG-CTTAGC
1 CCGG-TTATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
* *
64934391 CCGG-AATTAGTAACTTGCACAAATGCCTTC-GGATCTTAGT
1 CCGGTTA-TAGTAACTTGCACAAATGCCTTCGGGA-CTTAGC
* * * *
64934431 CCAGATATAGTCACTTAGCACAAA-GCGTTCGGGACTTAGC
1 CCGGTTATAGTAACTT-GCACAAATGCCTTCGGGACTTAGC
64934471 CCGG
1 CCGG
64934475 ACATCATTCG
Statistics
Matches: 134, Mismatches: 21, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 88 0.66
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
Found at i:64934402 original size:79 final size:81
Alignment explanation
Indices: 64934293--64934475 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
64934283 AACTTGTTCA
* * *
64934293 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCCCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCCCACAAATGCCTTC-GGATCTTAACCCAG
*
64934356 ATTTAGTAACTT-GCACC
65 ATATAGTAACTTAGCA-C
** **
64934373 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTTGCACAAATGCCTTCGGATCTTAGTCCAGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCCCACAAATGCCTTCGGATCTTAACCCAGA
*
64934436 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
* *
64934452 AAAGCGTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
64934476 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 27 0.31
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCCCACAAATGCCTTCGGATCTTAACCCAGA
TATAGTAACTTAGCAC
Found at i:64941679 original size:19 final size:19
Alignment explanation
Indices: 64941655--64941691 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
64941645 CCACTTTCAA
64941655 ACAATCACGTATCACTTTG
1 ACAATCACGTATCACTTTG
64941674 ACAATCACGTATCACTTT
1 ACAATCACGTATCACTTT
64941692 AACCTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.32
Consensus pattern (19 bp):
ACAATCACGTATCACTTTG
Found at i:64954036 original size:50 final size:49
Alignment explanation
Indices: 64953923--64954052 Score: 172
Period size: 50 Copynumber: 2.6 Consensus size: 49
64953913 CTGGTATGCA
* * **
64953923 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* * *
64953972 TAGTAACCCGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
64954022 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
64954053 TCACAGTTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
49 27 0.39
50 39 0.56
51 4 0.06
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:64954106 original size:101 final size:99
Alignment explanation
Indices: 64953923--64954109 Score: 241
Period size: 101 Copynumber: 1.9 Consensus size: 99
64953913 CTGGTATGCA
* * *
64953923 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAACCCGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAACCCGCACTTA
*
64953988 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * * * *
64954022 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAACCCGCAC
*
64954086 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
64954110 AATAGATCAT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.41
101 40 0.54
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAACCCGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:64957992 original size:38 final size:38
Alignment explanation
Indices: 64957941--64958088 Score: 181
Period size: 38 Copynumber: 3.8 Consensus size: 38
64957931 GTAGGCTATA
* *
64957941 TGCTGGAAATATATCCGGGTTAAATCCCGCAGCCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGCCTTCG
*
64957979 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGCCTTCG
* * * *
64958017 TGCTTGTATCATATCCGAGTTAAATCCCGCAGGCC-TAG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCA-GCCTTCG
* *
64958055 TGCTGGTATTATATCTGAGCTTAAAGTCCCGCAG
1 TGCTGGTATTATATCCG-GGTTAAA-TCCCGCAG
64958089 GTTTTGTGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
38 79 0.84
39 8 0.09
40 7 0.07
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGCCTTCG
Found at i:64958031 original size:76 final size:78
Alignment explanation
Indices: 64957951--64958098 Score: 212
Period size: 76 Copynumber: 1.9 Consensus size: 78
64957941 TGCTGGAAAT
* * *
64957951 ATATCCGGGTTAAATCCCGCA-GCCTTCGTGCTGGTATTATATCCG-GGTTAAA-TCCCGCAGGC
1 ATATCCGAGTTAAATCCCGCAGGCC-TAGTGCTGGTATTATATCCGAGCTTAAAGTCCCGCAGGC
64958013 TTCGTGCTTGTATC
65 TTCGTGCTTGTATC
* *
64958027 ATATCCGAGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCTGAGCTTAAAGTCCCGCAGGTT
1 ATATCCGAGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGAGCTTAAAGTCCCGCAGGCT
*
64958092 TTGTGCT
66 TCGTGCT
64958099 GGTGATTGGA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
76 38 0.60
77 9 0.14
78 16 0.25
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (78 bp):
ATATCCGAGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGAGCTTAAAGTCCCGCAGGCT
TCGTGCTTGTATC
Found at i:64963877 original size:79 final size:80
Alignment explanation
Indices: 64963774--64963958 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 80
64963764 GCTACTCGTT
* *
64963774 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
64963837 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
64963854 CCAACGCCTTCGGGA-TTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 -CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
64963918 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
64963934 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
64963959 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 25 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:64963958 original size:40 final size:40
Alignment explanation
Indices: 64963755--64963958 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
64963745 CGGAATTTAA
** *
64963755 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64963795 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
64963835 CCGGATTTAGTAACTCGCACCAACGCCTTCGGGA-TTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
64963874 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
64963914 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
64963954 CCGGA
1 CCGGA
64963959 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 3 0.02
39 31 0.22
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64966550 original size:18 final size:18
Alignment explanation
Indices: 64966512--64966550 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
64966502 TTGTTACAGC
*
64966512 AAGGAAGTGAAGAAGAGG
1 AAGGAAGTGAAGAAAAGG
* *
64966530 AAGGAAGTGATGAAAATG
1 AAGGAAGTGAAGAAAAGG
64966548 AAG
1 AAG
64966551 AAGACAAAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.38, T:0.10
Consensus pattern (18 bp):
AAGGAAGTGAAGAAAAGG
Found at i:64976501 original size:47 final size:46
Alignment explanation
Indices: 64976153--64976513 Score: 245
Period size: 46 Copynumber: 7.8 Consensus size: 46
64976143 TTATTTGTGT
* *
64976153 GCCAATGTAAGA-CATGTCTAGGACAT-GCATCGGCCACATT-ATGA-GA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATGATGA
* *
64976199 GCCAATGTAAGACCATGCCTGGGACATGGCATCGGTA-TTGA-GATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATGAT--GA
* * * *
64976247 GCCAGAGTAAGA-CATGTCTAGGACAT-GCATCAGCCTCGA-GATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGATG--A
* *
64976293 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAT-ATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGATGATGA
* * *
64976337 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGT-ATAGAGGTA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGAT-GATG-A
*
64976386 -CCAGTGTAAGACCATGTCTGGGA-A--GCATCGACATGGAT-ATTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATGA-T--GA
* *
64976431 GCTAGTGTAAGACCATGTCTGGGATATGGCATCGACTTGATGGATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAT-GATGA
* *
64976478 GCCAGTGTAAGACCATGTTTGGGATATGGCATCGAC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
64976514 ATTATACCCT
Statistics
Matches: 258, Mismatches: 28, Indels: 57
0.75 0.08 0.17
Matches are distributed among these distances:
43 3 0.01
44 13 0.05
45 29 0.11
46 90 0.35
47 65 0.25
48 48 0.19
49 9 0.03
50 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGATGA
Found at i:64986258 original size:46 final size:46
Alignment explanation
Indices: 64986191--64986318 Score: 220
Period size: 46 Copynumber: 2.8 Consensus size: 46
64986181 TGTAACCCAC
*
64986191 CTATAAGTGAACTCAGAATCAACTCAACGAGCTCGGGCGTTCGCAT
1 CTATAAGTGAACTCGGAATCAACTCAACGAGCTCGGGCGTTCGCAT
* *
64986237 CTATAAGTGAACTCGGAATCAAATCAACGAGCTTGGGCGTTCGCAT
1 CTATAAGTGAACTCGGAATCAACTCAACGAGCTCGGGCGTTCGCAT
*
64986283 CTATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CTATAAGTGAACTCGGAATCAACTCAACGAGCTCGG
64986319 ATGCCTAGTT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (46 bp):
CTATAAGTGAACTCGGAATCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:64987997 original size:20 final size:21
Alignment explanation
Indices: 64987958--64987997 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
64987948 GTTATAATGA
**
64987958 CCACACGGGTGTGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
64987979 CCACACGGGCATG-TGCCCT
1 CCACACGGGCATGTTGCCCT
64987998 GTTTCAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:64990449 original size:41 final size:42
Alignment explanation
Indices: 64990398--64990505 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 42
64990388 GTGAGATTAT
* *
64990398 GTGTTAGACCATATCTAGGATATGGCATCGACATAAGAT-TC
1 GTGTAAGACCATATCTAGGATATGGCATCGACATAAGATCCC
* * * * * *
64990439 GTGTAAGACCATAGCTTGGCTATTGGTATCGATATGAGATCCC
1 GTGTAAGACCATATCTAGGATA-TGGCATCGACATAAGATCCC
* *
64990482 ATGTAAGACCATATCTAGTATATG
1 GTGTAAGACCATATCTAGGATATG
64990506 ACATTGTATG
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
41 18 0.35
42 16 0.31
43 18 0.35
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTAGGATATGGCATCGACATAAGATCCC
Found at i:65000151 original size:41 final size:42
Alignment explanation
Indices: 65000089--65000204 Score: 135
Period size: 43 Copynumber: 2.8 Consensus size: 42
65000079 TAGGGTTAGT
65000089 TGAGATTACGTGTAAGACCATATCTGGGATAT-GCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
** * * *
65000130 TGAGATTTTGTGTAAGGCCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* ** *
65000173 AGAGATCCCATGTAAGACCATATCTGGGATAT
1 TGAGATTACGTGTAAGACCATATCTGGGATAT
65000205 TTATTGGCCA
Statistics
Matches: 60, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
41 26 0.43
42 2 0.03
43 32 0.53
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:65001564 original size:36 final size:38
Alignment explanation
Indices: 65001512--65001584 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 38
65001502 TGATGTGTAT
* * *
65001512 CGGGTTAAATCCCGCA-GCTTCGTGCTGGTA-TATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
65001548 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
65001585 TGGGCCTTCG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
36 15 0.47
37 12 0.38
38 5 0.16
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:65001728 original size:42 final size:43
Alignment explanation
Indices: 65001561--65001733 Score: 248
Period size: 43 Copynumber: 4.1 Consensus size: 43
65001551 GATAAATCCC
* * *
65001561 GCAGGCCTAGTGCTGGT-AT-TATATT-GGGCCTTCG-GCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
65001600 GCAGGCTTAGTGCCGGTGATGTGTATTTGGGCCTTCGTGCTTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
65001643 GTAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
65001686 GCAGGCTTCGTGCCGGTGATGTGTA-TCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
65001728 GCAGGC
1 GCAGGC
65001734 GTAATGCCAG
Statistics
Matches: 121, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
39 15 0.12
40 2 0.02
41 5 0.04
42 32 0.26
43 67 0.55
ACGTcount: A:0.12, C:0.23, G:0.35, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:65002133 original size:45 final size:44
Alignment explanation
Indices: 65002084--65002183 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 44
65002074 GCTTAGCAAA
*
65002084 CTATAATGCCGGTGAGATACT-ATTCGGGCCTTCGAGCCTACCAGG
1 CTATAATGCCGGTGAGA-ACTGATTCGGGCC-TCGAGCCTAACAGG
65002129 CTATAATGCCGGT--GAACTGATTCGGGCCTCGAGCCTAACAGG
1 CTATAATGCCGGTGAGAACTGATTCGGGCCTCGAGCCTAACAGG
65002171 C-A-AATGCCGGTGA
1 CTATAATGCCGGTGA
65002184 TTGAGAAAAG
Statistics
Matches: 51, Mismatches: 1, Indels: 9
0.84 0.02 0.15
Matches are distributed among these distances:
40 9 0.18
41 1 0.02
42 17 0.33
43 11 0.22
45 13 0.25
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (44 bp):
CTATAATGCCGGTGAGAACTGATTCGGGCCTCGAGCCTAACAGG
Found at i:65017805 original size:38 final size:38
Alignment explanation
Indices: 65017746--65018016 Score: 407
Period size: 38 Copynumber: 7.1 Consensus size: 38
65017736 ATTTGATGTG
*
65017746 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
* *
65017786 TATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
65017824 TATCCGGGTTAAATCCCGCAGGCTTTGTGTTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* **
65017862 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAACA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
*
65017900 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
65017938 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * * *
65017976 TATCCGGGTTAAATCCCGCAGGCCTAGTACTGATATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
65018014 TAT
1 TAT
65018017 TCAGGCCTTG
Statistics
Matches: 210, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
38 198 0.94
39 5 0.02
40 7 0.03
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:65018068 original size:44 final size:44
Alignment explanation
Indices: 65018013--65018143 Score: 144
Period size: 45 Copynumber: 3.0 Consensus size: 44
65018003 TACTGATATT
* * *
65018013 ATATTCAGGCCTTGAGCCTAGCAGGCTATTATGCCGGTGAGAT-
1 ATATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
* *
65018056 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACTGGTGACATG
1 A-TATTCGGGCC-TTGAGCCTAGCAGGCTATAATGCCGGTGACATG
* * *
65018102 ATA-TCGAGCCTCGAGCCTAGCAGGCGA-AATGCCGGTGA-ATG
1 ATATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
65018143 A
1 A
65018144 ATAAAAGTGT
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
41 4 0.05
42 9 0.12
43 16 0.21
44 15 0.20
45 30 0.40
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (44 bp):
ATATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
Found at i:65019349 original size:19 final size:17
Alignment explanation
Indices: 65019321--65019360 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
65019311 GTGAATTGAT
65019321 AATG-AATTGAAATGAGA
1 AATGAAATTG-AATGAGA
65019338 ATATGAAATTGAATGAGA
1 A-ATGAAATTGAATGAGA
65019356 AATGA
1 AATGA
65019361 TATATGTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 5 0.24
18 11 0.52
19 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.23, T:0.25
Consensus pattern (17 bp):
AATGAAATTGAATGAGA
Found at i:65025383 original size:20 final size:20
Alignment explanation
Indices: 65025367--65025405 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65025357 TAATATTGAG
*
65025367 AGCTTGTCTGCATTATTGGC
1 AGCTTATCTGCATTATTGGC
*
65025387 AGTTTATCTGCATTATTGG
1 AGCTTATCTGCATTATTGG
65025406 TGGCTCGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.23, T:0.44
Consensus pattern (20 bp):
AGCTTATCTGCATTATTGGC
Found at i:65025452 original size:20 final size:20
Alignment explanation
Indices: 65025368--65025454 Score: 59
Period size: 20 Copynumber: 4.3 Consensus size: 20
65025358 AATATTGAGA
* **
65025368 GCTTGTCTGCATTATTGGCA
1 GCTTGTCTGCATTACTGGTG
* * *
65025388 GTTTATCTGCATTATTGGTG
1 GCTTGTCTGCATTACTGGTG
* ** *
65025408 GCTCGATC-GCATTACCAGTT
1 GCTTG-TCTGCATTACTGGTG
*
65025428 ACTTGTCTGCATTACTGGTG
1 GCTTGTCTGCATTACTGGTG
65025448 GCTTGTC
1 GCTTGTC
65025455 CATAATTTGG
Statistics
Matches: 48, Mismatches: 17, Indels: 4
0.70 0.25 0.06
Matches are distributed among these distances:
19 2 0.04
20 44 0.92
21 2 0.04
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.40
Consensus pattern (20 bp):
GCTTGTCTGCATTACTGGTG
Found at i:65028165 original size:48 final size:48
Alignment explanation
Indices: 65028094--65028185 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
65028084 ACTGTGATTA
* * *
65028094 ATGATATTTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCG
1 ATGATATGTGTGCCTGTATAAGACCATGTCTAGGACATGGCATCGGCG
65028142 ATGATATGTGTG-CTAGTATAAGACCATGTCTAGGACATGGCATC
1 ATGATATGTGTGCCT-GTATAAGACCATGTCTAGGACATGGCATC
65028186 AACATTGACA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
47 2 0.05
48 38 0.95
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
ATGATATGTGTGCCTGTATAAGACCATGTCTAGGACATGGCATCGGCG
Found at i:65028209 original size:48 final size:48
Alignment explanation
Indices: 65028112--65028216 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
65028102 TGTGCCTGTG
* ** * * **
65028112 TAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTAGTA
1 TAAGACCATGTCTAGGACATGGCATCAACGATGACATGAGACCTAGTA
*
65028160 TAAGACCATGTCTAGGACATGGCATCAAC-ATTGACATGAGACCTTGTA
1 TAAGACCATGTCTAGGACATGGCATCAACGA-TGACATGAGACCTAGTA
65028208 TAAGACCAT
1 TAAGACCAT
65028217 ATCCGGGATA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 1 0.02
48 47 0.98
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTAGGACATGGCATCAACGATGACATGAGACCTAGTA
Found at i:65032022 original size:49 final size:49
Alignment explanation
Indices: 65031949--65032136 Score: 173
Period size: 50 Copynumber: 3.8 Consensus size: 49
65031939 AGCCGAAGCT
* *
65031949 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA-TGCAAC-CAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACTG-AACTCAAC
* * *
65031997 AGTCTGGTACACGTAGTAGCGTGCACTTAGTACTACACACGTGACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-TGAACTCAAC
** * * **
65032048 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-TGAACTCA-AC
* * * * *
65032099 TTCGGGTACGCATAGTAGCCTGCAGTTAGTACTACACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
65032137 TGCGACCTCA
Statistics
Matches: 116, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
48 1 0.01
49 34 0.29
50 44 0.38
51 37 0.32
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACTGAACTCAAC
Found at i:65032072 original size:50 final size:50
Alignment explanation
Indices: 65031961--65032090 Score: 176
Period size: 50 Copynumber: 2.6 Consensus size: 50
65031951 CTGGTACGCA
**
65031961 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTG-AACCAACAGTCTAATACACG
* * *
65032010 TAGTAGCGTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAAC-CAACAGTCTAATACACG
65032060 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
65032091 TCACAGTTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
49 25 0.35
50 41 0.57
51 6 0.08
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAACCAACAGTCTAATACACG
Found at i:65032144 original size:101 final size:99
Alignment explanation
Indices: 65031961--65032147 Score: 241
Period size: 101 Copynumber: 1.9 Consensus size: 99
65031951 CTGGTACGCA
* * * *
65031961 TAGTAGCCTGCACTTAGTACTACACATGCAACCAACAGTCTGGTACACGTAGTAGCGTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCAACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
65032026 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
** * * *
65032060 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAG
1 TAGTAGCCTGCACTTAGTACTACACACGCAACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
65032124 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
65032148 AATAGATCAT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
98 4 0.05
99 29 0.39
101 41 0.55
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCAACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:65033320 original size:15 final size:15
Alignment explanation
Indices: 65033273--65033328 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
65033263 CAAGAAAACC
*
65033273 GAATAAAGAAATCCA
1 GAATAAAGAAATCTA
*
65033288 -AGATAGAA-AAACCTA
1 GA-ATA-AAGAAATCTA
65033303 GAATAAAGAAATCTA
1 GAATAAAGAAATCTA
65033318 GAATAAAGAAA
1 GAATAAAGAAA
65033329 CCCAAGATAC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
14 3 0.09
15 28 0.82
16 3 0.09
ACGTcount: A:0.62, C:0.09, G:0.14, T:0.14
Consensus pattern (15 bp):
GAATAAAGAAATCTA
Found at i:65036461 original size:50 final size:49
Alignment explanation
Indices: 65036342--65036521 Score: 166
Period size: 50 Copynumber: 3.6 Consensus size: 49
65036332 ATCTGGTACG
* **
65036342 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGTTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTAATACA
** * *
65036391 TGTAGTAGCCTGTACTTAGTACTACACATGTGACCTCACCA-TCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAACAGTCTAATACA
* * * *** *
65036441 CATAGTAGCCTACACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAG---TCTAATACA
*
65036492 CATAGTAGCCTGCAGTTAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
65036522 CAACCTCACA
Statistics
Matches: 104, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 29 0.28
50 36 0.35
51 36 0.35
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTAATACA
Found at i:65043119 original size:30 final size:30
Alignment explanation
Indices: 65043083--65043144 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
65043073 GGCTATTTCC
65043083 TAGCCTTATTTCTCACCCAAATTTAACCTT
1 TAGCCTTATTTCTCACCCAAATTTAACCTT
*
65043113 TAGCCTTATTTCTCGCCCAAATTTAACCTT
1 TAGCCTTATTTCTCACCCAAATTTAACCTT
65043143 TA
1 TA
65043145 ACCTACAACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.29, G:0.05, T:0.40
Consensus pattern (30 bp):
TAGCCTTATTTCTCACCCAAATTTAACCTT
Found at i:65051887 original size:13 final size:13
Alignment explanation
Indices: 65051869--65051897 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
65051859 AGTTGTTTAT
65051869 TAAACTAATTAAC
1 TAAACTAATTAAC
65051882 TAAACTAATTAAC
1 TAAACTAATTAAC
65051895 TAA
1 TAA
65051898 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:65062297 original size:20 final size:18
Alignment explanation
Indices: 65062257--65062297 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
65062247 CGGGTTAGGA
*
65062257 ACACGGGCGTGTGTGACC
1 ACACAGGCGTGTGTGACC
65062275 ACACAGGCGTGTGTGACC
1 ACACAGGCGTGTGTGACC
65062293 ACACA
1 ACACA
65062298 ACCTACCTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.15
Consensus pattern (18 bp):
ACACAGGCGTGTGTGACC
Found at i:65071322 original size:47 final size:47
Alignment explanation
Indices: 65071271--65071828 Score: 902
Period size: 47 Copynumber: 11.7 Consensus size: 47
65071261 TTAGGATTCT
* *
65071271 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
65071318 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
65071365 ATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65071412 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
65071461 ATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65071508 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65071555 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
65071604 ATGTGATGAGTGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
65071653 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
65071700 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
65071747 ATGTGATGAATGTGAAAGTGTATGTATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
65071794 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65071829 TCCCGAAGGG
Statistics
Matches: 486, Mismatches: 20, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 345 0.71
49 140 0.29
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:65071450 original size:143 final size:143
Alignment explanation
Indices: 65071292--65071828 Score: 916
Period size: 143 Copynumber: 3.8 Consensus size: 143
65071282 GTGAACATGC
65071292 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
65071357 AATGGCCAATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
65071422 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
*
65071435 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
65071500 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
65071565 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
*
65071578 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAGTGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
*
65071643 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64 CTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
65071708 AATGTGAAAGTG--T
129 AATGTGAAAGTGTAT
* * * * *
65071721 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAGGGCCG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * *
65071786 AGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65071829 TCCCGAAGGG
Statistics
Matches: 378, Mismatches: 14, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
141 54 0.14
143 230 0.61
145 94 0.25
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTAT
Found at i:65073522 original size:40 final size:40
Alignment explanation
Indices: 65073279--65073510 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
65073269 GAGAATTGAG
*
65073279 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65073319 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65073359 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
65073399 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
65073439 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
65073479 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
65073511 ATCATGCTGG
Statistics
Matches: 176, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 176 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:65077316 original size:47 final size:47
Alignment explanation
Indices: 65077265--65077869 Score: 1005
Period size: 47 Copynumber: 12.7 Consensus size: 47
65077255 TTAGGATTCT
* *
65077265 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
65077312 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
65077359 ATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
*
65077408 ATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65077455 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65077502 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
65077551 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
65077598 ATGTGATGAGTGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
65077647 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
65077694 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
65077741 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
65077788 ATGTGATGAATGTGAAAGTGTATGTATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
65077835 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65077870 TCCCGAAGGG
Statistics
Matches: 533, Mismatches: 18, Indels: 14
0.94 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 394 0.74
49 138 0.26
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:65077395 original size:96 final size:94
Alignment explanation
Indices: 65077265--65077869 Score: 1005
Period size: 96 Copynumber: 6.4 Consensus size: 94
65077255 TTAGGATTCT
* *
65077265 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
65077329 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
* *
65077359 ATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAGTGTGAA
1 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65077424 AGTGTATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
65077455 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
65077520 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
*
65077551 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAGTGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
65077616 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
65077647 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
65077712 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
* *
65077741 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * *
65077806 TGTATGTATGTGATAGGGCCGAGTGGCCA
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * *
65077835 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65077870 TCCCGAAGGG
Statistics
Matches: 488, Mismatches: 18, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
93 1 0.00
94 209 0.43
96 278 0.57
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:65077438 original size:143 final size:141
Alignment explanation
Indices: 65077265--65077869 Score: 973
Period size: 143 Copynumber: 4.2 Consensus size: 141
65077255 TTAGGATTCT
*
65077265 ATGTGATG-GATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAG-TGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65077328 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGAT
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGAT
65077393 AAGGCCTAATGGCCG
127 AAGGCCTAATGGCCG
65077408 ATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
65077473 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGATAA
65077538 GGCCTAATGGCCG
129 GGCCTAATGGCCG
* *
65077551 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAGTGTGAAAG
1 ATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
65077616 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAA
65077681 GGCCTAATGGCCG
129 GGCCTAATGGCCG
*
65077694 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * *
65077759 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAGGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGG
* * *
65077824 CCGAGTGGCCA
131 CCTAATGGCCG
* *
65077835 ACGTGATG-GATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAG-TGTGAAAGTGTATATATGTGATAAG
65077870 TCCCGAAGGG
Statistics
Matches: 441, Mismatches: 16, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
141 98 0.22
142 1 0.00
143 297 0.67
144 1 0.00
145 44 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGATGAGTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGG
CCTAATGGCCG
Found at i:65079824 original size:26 final size:25
Alignment explanation
Indices: 65079743--65079842 Score: 73
Period size: 26 Copynumber: 4.1 Consensus size: 25
65079733 AGTGAAATTT
65079743 TTTTAATTTGGATATTTATATCTTTA
1 TTTTAATTTGGATATTTATAT-TTTA
* * * ** * *
65079769 TTATGATTTGTATAGCTGTATTATA
1 TTTTAATTTGGATATTTATATTTTA
*
65079794 -TTTAATTTGGATATTTATTTCTTTA
1 TTTTAATTTGGATATTTATAT-TTTA
*
65079819 TTTTAATTT--ATATTT-TTTTTTA
1 TTTTAATTTGGATATTTATATTTTA
65079841 TT
1 TT
65079843 ATAACTATTA
Statistics
Matches: 57, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
22 6 0.11
23 3 0.05
24 19 0.33
25 6 0.11
26 23 0.40
ACGTcount: A:0.25, C:0.03, G:0.08, T:0.64
Consensus pattern (25 bp):
TTTTAATTTGGATATTTATATTTTA
Found at i:65082720 original size:10 final size:10
Alignment explanation
Indices: 65082693--65082731 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
65082683 TTAAATTCTA
65082693 AAAGATAAAT
1 AAAGATAAAT
65082703 ACAA-ATAAAT
1 A-AAGATAAAT
*
65082713 AAAGATAATT
1 AAAGATAAAT
65082723 AAAGATAAA
1 AAAGATAAA
65082732 AATAAATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:65082771 original size:13 final size:13
Alignment explanation
Indices: 65082755--65082779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65082745 TCTAAATCTA
65082755 AATAATTATCCTT
1 AATAATTATCCTT
65082768 AATAATTATCCT
1 AATAATTATCCT
65082780 AGTATAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
AATAATTATCCTT
Found at i:65085837 original size:48 final size:47
Alignment explanation
Indices: 65085766--65085883 Score: 173
Period size: 48 Copynumber: 2.5 Consensus size: 47
65085756 ATGAAAAAAT
* *
65085766 GTGGTGCTAAGTGGATATTCCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGATTACACATATCGATACAT-TAAC
* * * *
65085814 GTGGTGCTAAGTGGATATGCCACGTTTACATATATCGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGATTACACATATCGATACATTAAC
65085861 GTGGTGCTAAGTGGATATACCAC
1 GTGGTGCTAAGTGGATATACCAC
65085884 AGTTAAACAT
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
47 26 0.41
48 38 0.59
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACGATTACACATATCGATACATTAAC
Found at i:65094403 original size:10 final size:10
Alignment explanation
Indices: 65094379--65094503 Score: 57
Period size: 10 Copynumber: 12.3 Consensus size: 10
65094369 AAGATATATC
65094379 TATAATGAAATA
1 TATAAT-AAA-A
65094391 TATAATAAAA
1 TATAATAAAA
*
65094401 TATAAT---T
1 TATAATAAAA
65094408 TATAGATAAAA
1 TATA-ATAAAA
*
65094419 TATAATATAA
1 TATAATAAAA
*
65094429 TATAATATAA
1 TATAATAAAA
*
65094439 TGGATAAT-ATA
1 T--ATAATAAAA
65094450 TATAAATAAAA
1 TAT-AATAAAA
65094461 -ATAATAACTAA
1 TATAATAA--AA
*
65094472 TATTTATAAAA
1 TA-TAATAAAA
*
65094483 -ATAA-ATAA
1 TATAATAAAA
*
65094491 TATAAAAAAA
1 TATAATAAAA
65094501 TAT
1 TAT
65094504 TTAAAATAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 30
0.69 0.08 0.23
Matches are distributed among these distances:
7 4 0.04
8 5 0.06
9 13 0.15
10 35 0.39
11 15 0.17
12 12 0.13
13 5 0.06
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (10 bp):
TATAATAAAA
Found at i:65094418 original size:18 final size:17
Alignment explanation
Indices: 65094391--65094439 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
65094381 TAATGAAATA
65094391 TATAATAAAATATAATT
1 TATAATAAAATATAATT
65094408 TATAGATAAAATATAA--
1 TATA-ATAAAATATAATT
*
65094424 TATAATATAATATAAT
1 TATAATAAAATATAAT
65094440 GGATAATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 10 0.34
16 4 0.14
17 4 0.14
18 11 0.38
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
TATAATAAAATATAATT
Found at i:65094427 original size:5 final size:5
Alignment explanation
Indices: 65094390--65094458 Score: 61
Period size: 5 Copynumber: 13.2 Consensus size: 5
65094380 ATAATGAAAT
* *
65094390 ATATA ATAAA ATATA ATTTATA GATAAA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA A--TATA -ATATA ATATA ATATA ATATA ATATA
65094438 ATGGATA ATAT- ATATA A-ATA A
1 AT--ATA ATATA ATATA ATATA A
65094459 AAATAATAAC
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
4 8 0.15
5 33 0.61
6 3 0.06
7 9 0.17
8 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.36
Consensus pattern (5 bp):
ATATA
Found at i:65094464 original size:26 final size:26
Alignment explanation
Indices: 65094443--65094492 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
65094433 ATATAATGGA
65094443 TAATATATATAAATAAAAATAATAAC
1 TAATATATATAAATAAAAATAATAAC
*
65094469 TAATATTTATAAA-AATAAATAATA
1 TAATATATATAAATAA-AAATAATA
65094493 TAAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (26 bp):
TAATATATATAAATAAAAATAATAAC
Found at i:65094467 original size:22 final size:23
Alignment explanation
Indices: 65094442--65094494 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
65094432 AATATAATGG
65094442 ATAATATATATAAATAAAAAT-A
1 ATAATATATATAAATAAAAATAA
**
65094464 ATAACTA-ATATTTATAAAAATAA
1 ATAA-TATATATAAATAAAAATAA
65094487 ATAATATA
1 ATAATATA
65094495 AAAAAATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (23 bp):
ATAATATATATAAATAAAAATAA
Found at i:65099779 original size:165 final size:165
Alignment explanation
Indices: 65099490--65099824 Score: 530
Period size: 165 Copynumber: 2.0 Consensus size: 165
65099480 TCAAGGTGAG
* * * *
65099490 TTATATCATTGAGGCCATGAATTACATCACCTTTCTCTTTTTCCTCCATTTTATCATTTTTTGGA
1 TTATATCATTAAGGCCATGAATTACATCACCCTCCTCTTTTTCCTCCATTTTATCATTTTTGGGA
*
65099555 TATAAAATTTGTCTAAATATTATTTTTCTTCCCTTTAATAGATGCTTGATAAAGTTTCACTAAAT
66 TATAAAATTTGTCTAAATATTATTTTTCTTCCCTTCAATAGATGCTTGATAAAGTTTCACTAAAT
* *
65099620 GTT-TAGACGTATGACAGGTATATGCCCAATGCCCTC
131 GTTCAAG-CATATGACAGGTATATGCCCAATGCCC-C
*
65099656 TTATATCATTAAGGCTATGAATTACATCACCCTCCTCTTTTTCCTCCATTTTATCA-TTTTGGGA
1 TTATATCATTAAGGCCATGAATTACATCACCCTCCTCTTTTTCCTCCATTTTATCATTTTTGGGA
* *
65099720 TATTAAATTTGTCTAAATATTATTTTTCTTCTCTTCAATAGATGCTTGATAAAGTTTCACTAAAT
66 TATAAAATTTGTCTAAATATTATTTTTCTTCCCTTCAATAGATGCTTGATAAAGTTTCACTAAAT
* *
65099785 GTTCAAGCATATGACAGGTATGTGCCCAATGGCCC
131 GTTCAAGCATATGACAGGTATATGCCCAATGCCCC
65099820 TTATA
1 TTATA
65099825 CCACATTGGT
Statistics
Matches: 156, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
164 6 0.04
165 96 0.62
166 54 0.35
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.42
Consensus pattern (165 bp):
TTATATCATTAAGGCCATGAATTACATCACCCTCCTCTTTTTCCTCCATTTTATCATTTTTGGGA
TATAAAATTTGTCTAAATATTATTTTTCTTCCCTTCAATAGATGCTTGATAAAGTTTCACTAAAT
GTTCAAGCATATGACAGGTATATGCCCAATGCCCC
Found at i:65106692 original size:25 final size:25
Alignment explanation
Indices: 65106644--65106692 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
65106634 TGCGTAAAAG
* *
65106644 TACTCCGTTTAAGTGGTCTGAGGAA
1 TACTCCATTTAAGTGGTCTAAGGAA
65106669 TACTCCATTTAAGTTGG-CTAAGGA
1 TACTCCATTTAAG-TGGTCTAAGGA
65106693 GGATGAGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (25 bp):
TACTCCATTTAAGTGGTCTAAGGAA
Found at i:65109860 original size:3 final size:3
Alignment explanation
Indices: 65109852--65109933 Score: 78
Period size: 3 Copynumber: 27.3 Consensus size: 3
65109842 ACTAATATTA
* * * *
65109852 AAT AAT AAT AAT ACT AGA- AAT AAT AAT AACT AGT AAT AAT GA- AAC
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
* *
65109897 ATT AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
65109934 GTGAAATATA
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
2 2 0.03
3 60 0.94
4 2 0.03
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:65109875 original size:15 final size:16
Alignment explanation
Indices: 65109855--65109891 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
65109845 AATATTAAAT
65109855 AATAATAAT-ACTAGA
1 AATAATAATAACTAGA
*
65109870 AATAATAATAACTAGT
1 AATAATAATAACTAGA
65109886 AATAAT
1 AATAAT
65109892 GAAACATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (16 bp):
AATAATAATAACTAGA
Found at i:65110563 original size:22 final size:22
Alignment explanation
Indices: 65110517--65110563 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
65110507 TTATGTGTAT
*
65110517 AAAAAGAAAGAAATAAAAACGA
1 AAAAAGAAAGAAATAAAAACAA
*
65110539 AAAAAGAAAGAAATAATAA-AA
1 AAAAAGAAAGAAATAAAAACAA
65110560 AAAA
1 AAAA
65110564 TTCGAAAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.81, C:0.02, G:0.11, T:0.06
Consensus pattern (22 bp):
AAAAAGAAAGAAATAAAAACAA
Found at i:65115550 original size:68 final size:66
Alignment explanation
Indices: 65115439--65115629 Score: 213
Period size: 68 Copynumber: 2.8 Consensus size: 66
65115429 TGTGGAATTA
* * * * *
65115439 AGAGTATTCTCTAGTTAATATGGGATTAAAATTAACTTTTTAATGAAAATAGTGAAGAAGTAAGT
1 AGAGTATTCT-TAGTCAATGT-GGATTAAAACTAACTTTTTAATGAAAGTAGTGAAGAAGTAAGC
65115504 TAT
64 TAT
* * * *
65115507 GTGAGTATTCTTAGCCAATGTGGAATTAAAACTAACTTTTTAATGAAAGTAGCGAAGAAGTGAGC
1 -AGAGTATTCTTAGTCAATGTGG-ATTAAAACTAACTTTTTAATGAAAGTAGTGAAGAAGTAAGC
65115572 TAT
64 TAT
* * *
65115575 AAAGTATTGTTTAATCAATGTGGATTAAAACTAA-TCTTTTAATGAAAGTAGTGAA
1 AGAGTATT-CTTAGTCAATGTGGATTAAAACTAACT-TTTTAATGAAAGTAGTGAA
65115630 AAAACTGTCA
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
66 1 0.01
67 37 0.36
68 57 0.55
69 9 0.09
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.35
Consensus pattern (66 bp):
AGAGTATTCTTAGTCAATGTGGATTAAAACTAACTTTTTAATGAAAGTAGTGAAGAAGTAAGCTA
T
Found at i:65116130 original size:3 final size:3
Alignment explanation
Indices: 65116122--65116162 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
65116112 TTCTGTCTAA
65116122 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
65116163 GTATCTATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:65122264 original size:23 final size:23
Alignment explanation
Indices: 65122238--65122281 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
65122228 TCATTTGTCT
* *
65122238 ATTTTTAAAATATTTTTTTTATG
1 ATTTTTAAAATAATTTATTTATG
*
65122261 ATTTTTGAAATAATTTATTTA
1 ATTTTTAAAATAATTTATTTA
65122282 ATCAAACTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (23 bp):
ATTTTTAAAATAATTTATTTATG
Found at i:65123589 original size:15 final size:15
Alignment explanation
Indices: 65123566--65123595 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
65123556 AGTACTATTA
*
65123566 AATATTTTTTAAAAT
1 AATAATTTTTAAAAT
65123581 AATAATTTTTAAAAT
1 AATAATTTTTAAAAT
65123596 TCAACGTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATAATTTTTAAAAT
Found at i:65123882 original size:12 final size:13
Alignment explanation
Indices: 65123864--65123893 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
65123854 AGTAGTAACT
65123864 CAAAACAAAAAAA
1 CAAAACAAAAAAA
65123877 -AAAACAAAAAAA
1 CAAAACAAAAAAA
65123889 CAAAA
1 CAAAA
65123894 ACTCATGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (13 bp):
CAAAACAAAAAAA
Found at i:65130904 original size:20 final size:20
Alignment explanation
Indices: 65130879--65130921 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
65130869 CACGAGTGTG
*
65130879 TGCTTCTTTGCATGGGCGTA
1 TGCTTCTTTGCACGGGCGTA
65130899 TGCTTCTTTGCACGGGCGTA
1 TGCTTCTTTGCACGGGCGTA
65130919 TGC
1 TGC
65130922 CTCATTCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.09, C:0.23, G:0.30, T:0.37
Consensus pattern (20 bp):
TGCTTCTTTGCACGGGCGTA
Found at i:65136136 original size:21 final size:21
Alignment explanation
Indices: 65136112--65136160 Score: 53
Period size: 24 Copynumber: 2.2 Consensus size: 21
65136102 TTTGTTATTG
*
65136112 CAATATCGAGTGGCTTGTCCA
1 CAATATCGAGTGGCTTGACCA
*
65136133 CAATGCTATTGAGTGGCTTGACCA
1 CAA---TATCGAGTGGCTTGACCA
65136157 CAAT
1 CAAT
65136161 GATGCAGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
21 4 0.17
24 19 0.83
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (21 bp):
CAATATCGAGTGGCTTGACCA
Found at i:65137487 original size:20 final size:21
Alignment explanation
Indices: 65137462--65137501 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
65137452 CTCTAGAAAC
65137462 AGGGC-ACACACCCGTGTGAA
1 AGGGCAACACACCCGTGTGAA
*
65137482 AGGGCAACACGCCCGTGTGA
1 AGGGCAACACACCCGTGTGA
65137502 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.28, C:0.30, G:0.33, T:0.10
Consensus pattern (21 bp):
AGGGCAACACACCCGTGTGAA
Found at i:65138827 original size:46 final size:46
Alignment explanation
Indices: 65138741--65138957 Score: 210
Period size: 46 Copynumber: 4.7 Consensus size: 46
65138731 CTCTATACAT
* * * *
65138741 GCCGATGCCATTTCCCAAACATGGTCTTACACT-G-ACACATCTCGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGTG
* * * *
65138787 GCTGATGCATGTCCTAGACATGTCTCACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGTG
* * * *
65138833 GCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTC-GTG
* *
65138879 GCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGTG
65138927 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
65138958 AGCGCACAAA
Statistics
Matches: 139, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
44 9 0.06
45 12 0.09
46 65 0.47
47 28 0.20
48 24 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTG
Found at i:65138917 original size:48 final size:48
Alignment explanation
Indices: 65138641--65138957 Score: 198
Period size: 46 Copynumber: 6.8 Consensus size: 48
65138631 CATAGGGTGT
* ** *
65138641 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAT-TC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--ATCTC
* * * ** * * * *
65138690 GAGGCTGACACCATGTCCCAGTCATGGTCTTACACTGACAC-C-TCTAT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCT-C
* * * *
65138737 ACATGCCGATGCCATTTCCCAAACATGGTCTTACACT-G-ACACATCTC
1 A-ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC
* * * *
65138784 -GTGGCTGATG-CATGTCCTAGACAT-GTCTCACACTGGCT-TACATCTC
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTC
* * * * *
65138830 GAGGCCAATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC
*
65138876 AATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCA--T-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC
65138921 AATGTGGCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 AA--T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
65138958 AGCGCACAAA
Statistics
Matches: 210, Mismatches: 42, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
44 9 0.04
45 16 0.08
46 68 0.32
47 29 0.14
48 55 0.26
49 33 0.16
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTC
Found at i:65149170 original size:65 final size:66
Alignment explanation
Indices: 65149061--65149196 Score: 256
Period size: 65 Copynumber: 2.1 Consensus size: 66
65149051 ACTTACATGC
65149061 AAGACAAAGAACCCAACCGAACCTTCAAGCCCTAGCAATGGCAATTCTTTCTTCAAATTCAGTGA
1 AAGACAAAGAACCCAACCGAACCTTCAAGCCCTAGCAATGGCAATTCTTTCTTCAAATTCAGTGA
65149126 A
66 A
*
65149127 AAGA-AAAGAACCCAACCGAACCTTCAAGCCCTAGCAATGGCAATTCTTTCTTCAAATTTAGTGA
1 AAGACAAAGAACCCAACCGAACCTTCAAGCCCTAGCAATGGCAATTCTTTCTTCAAATTCAGTGA
65149191 A
66 A
65149192 AAGAC
1 AAGAC
65149197 CAAGTGAAGG
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
65 64 0.94
66 4 0.06
ACGTcount: A:0.39, C:0.26, G:0.14, T:0.21
Consensus pattern (66 bp):
AAGACAAAGAACCCAACCGAACCTTCAAGCCCTAGCAATGGCAATTCTTTCTTCAAATTCAGTGA
A
Found at i:65149727 original size:16 final size:16
Alignment explanation
Indices: 65149688--65149730 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
65149678 AATTTTAACA
65149688 TGTATATGATTGAAAAT
1 TGTATATGATT-AAAAT
65149705 TGATATATGTATT-AAAT
1 TG-TATATG-ATTAAAAT
65149722 TGTATATGA
1 TGTATATGA
65149731 AATTGAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 1 0.04
16 6 0.25
17 8 0.33
18 6 0.25
19 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (16 bp):
TGTATATGATTAAAAT
Found at i:65158084 original size:49 final size:50
Alignment explanation
Indices: 65158015--65158149 Score: 168
Period size: 49 Copynumber: 2.7 Consensus size: 50
65158005 CTTTCATCAA
65158015 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-AAATT-GAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATTCG-G
* * * *
65158064 GTCGACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATTCGT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATTCGG
* * *
65158114 GCCAATGCCATGTCCCAGACAGGGTCTTACACTGAC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC
65158150 ACATCGCGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
48 1 0.01
49 37 0.50
50 34 0.46
51 2 0.03
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (50 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATTCGG
Found at i:65158145 original size:50 final size:49
Alignment explanation
Indices: 65158019--65158149 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 49
65158009 CATCAAGTCG
* *
65158019 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATTGAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATTGAGGCCA
* * * *
65158068 ACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATTCG-TGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-AAATT-GAGGCCA
*
65158118 ATGCCATGTCCCAGACAGGGTCTTACACTGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGAC
65158150 ACATCGCGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
48 1 0.01
49 33 0.47
50 34 0.49
51 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATTGAGGCCA
Found at i:65158224 original size:46 final size:46
Alignment explanation
Indices: 65157968--65158330 Score: 186
Period size: 47 Copynumber: 7.7 Consensus size: 46
65157958 AGGGTATAAT
* * * *
65157968 GCCGATGCCATATTCCAGACATGGTCTTACACTGGCTCT-TTCATC-AA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCA-CGAG
* * * *** *
65158015 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATTGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCA-CGAG
* * * * *
65158064 GTCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ACATATTCG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTC--A--CGAG
* * * *
65158114 GCCAATGCCATGTCCCAGACAGGGTCTTACACTGACACATCG---CGTA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTC-TCGTCACG-AG
* *
65158160 GCCAATGCATGTCCCAGACATGTCTTACACTGGCT-TACGGCACGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCACGAG
* * * * *
65158206 GCCGATGTATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCACGAG
* * * * * * *
65158252 ACTGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGAT-GCATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCACGAG
65158300 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
65158331 AGCACACCAA
Statistics
Matches: 249, Mismatches: 49, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 12 0.05
45 16 0.06
46 60 0.24
47 62 0.25
48 24 0.10
49 37 0.15
50 31 0.12
51 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCACGAG
Found at i:65164113 original size:46 final size:45
Alignment explanation
Indices: 65164057--65164223 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 45
65164047 TGATATGTGT
65164057 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGA
* * *
65164103 GCCAGTGTAAGACATGTCTGGGACATGCATCAG--CATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATT---ATGAGA
* * *
65164149 GCTAGTATAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-A-TTATGA-GA
*
65164197 GCTAGTGTAAGACATGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
65164224 GCGTCAGCTT
Statistics
Matches: 101, Mismatches: 11, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.04
46 66 0.65
47 1 0.01
48 27 0.27
49 1 0.01
50 1 0.01
51 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGA
Found at i:65164522 original size:129 final size:129
Alignment explanation
Indices: 65164292--65164543 Score: 450
Period size: 129 Copynumber: 2.0 Consensus size: 129
65164282 AGATGAGAGC
* * *
65164292 CAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGGAAGTCAATGAAAGACCTGTC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAAAGTCAATGAAAGACCTATC
65164357 TGGGACATGGCATCGACTTAGATGTGTAAGCCAGTGTAAGACCATGTTTGGAACATGGTCGTGT
66 TGGGACATGGCATCGACTTAGATGTGTAAGCCAGTGTAAGACCATGTTTGGAACATGGTCGTGT
* *
65164421 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAAAGTCAGTGTAAGACCTATC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAAAGTCAATGAAAGACCTATC
*
65164486 TGGGACATGGCATCGACTTAGATGTTTAAGCCAGTGTAAGACCATGTTTGGAACATGG
66 TGGGACATGGCATCGACTTAGATGTGTAAGCCAGTGTAAGACCATGTTTGGAACATGG
65164544 CATCGGCATC
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 117 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (129 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATATGAAAGTCAATGAAAGACCTATC
TGGGACATGGCATCGACTTAGATGTGTAAGCCAGTGTAAGACCATGTTTGGAACATGGTCGTGT
Found at i:65166320 original size:12 final size:12
Alignment explanation
Indices: 65166303--65166335 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
65166293 AGTGTTGACT
65166303 ACACAGGTCGAG
1 ACACAGGTCGAG
65166315 ACACAGGTCGAG
1 ACACAGGTCGAG
65166327 ACAC-GGTCG
1 ACACAGGTCG
65166336 TGTGTCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.30, C:0.27, G:0.33, T:0.09
Consensus pattern (12 bp):
ACACAGGTCGAG
Found at i:65173040 original size:19 final size:19
Alignment explanation
Indices: 65173004--65173042 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
65172994 TTTTTAAATT
* *
65173004 ATCTAAAATTTCAGATAAA
1 ATCTAAAATTTAAAATAAA
*
65173023 ATCTAAATTTTAAAATAAA
1 ATCTAAAATTTAAAATAAA
65173042 A
1 A
65173043 AGACTCTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (19 bp):
ATCTAAAATTTAAAATAAA
Found at i:65178572 original size:21 final size:21
Alignment explanation
Indices: 65178547--65178586 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
65178537 TTTAATATAA
65178547 TAATACCTT-ATTATATTATTT
1 TAATACCTTAATTA-ATTATTT
*
65178568 TAATACTTTAATTAATTAT
1 TAATACCTTAATTAATTAT
65178587 GACCCTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATACCTTAATTAATTATTT
Found at i:65180894 original size:68 final size:70
Alignment explanation
Indices: 65180780--65180938 Score: 241
Period size: 68 Copynumber: 2.3 Consensus size: 70
65180770 TCAACTTTAC
*
65180780 CCTTCTCTCTCTTTTTCGTTCTCACGTCTGAAGCAACTTCTTTTTTTCA-TTCTTCCCATTTCCT
1 CCTTCTCTCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCT
65180844 TCCAA
66 TCCAA
* * *
65180849 CCTTCTC-CTCTTTTTCATTGTCACGTCTGAATCATCTTCTTTTTTTCATTCTTCTTCCCATTTC
1 CCTTCTCTCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCA-T-TTCTTCCCATTTC
65180913 CTTCCAA
64 CTTCCAA
*
65180920 CCATCTCTCTCTTTTTCAT
1 CCTTCTCTCTCTTTTTCAT
65180939 GCTTCTATCC
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
68 37 0.46
69 7 0.09
71 26 0.32
72 11 0.14
ACGTcount: A:0.13, C:0.33, G:0.04, T:0.50
Consensus pattern (70 bp):
CCTTCTCTCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCT
TCCAA
Found at i:65185097 original size:43 final size:43
Alignment explanation
Indices: 65185034--65185118 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
65185024 TTAGGAATTA
65185034 GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTAG
1 GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTAG
* *
65185077 GTTGGGTATCAAGTTGGAAAAGGCATCAAATTGGTTGCCTTA
1 GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTA
65185119 TGTATTTGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (43 bp):
GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTAG
Found at i:65185548 original size:17 final size:17
Alignment explanation
Indices: 65185528--65185560 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
65185518 ATTAAGAATG
65185528 TTATTAAATTAAATTTT
1 TTATTAAATTAAATTTT
*
65185545 TTATTAAATTATATTT
1 TTATTAAATTAAATTT
65185561 AATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAATTAAATTTT
Found at i:65185821 original size:16 final size:16
Alignment explanation
Indices: 65185800--65185870 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
65185790 TGAATTACTG
*
65185800 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCA
*
65185816 ATTACAGCTATATTCA
1 ATTACAGCTCTATTCA
*
65185832 ATTACAGCTCTATTTA
1 ATTACAGCTCTATTCA
* *
65185848 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCA
65185864 ATTACAG
1 ATTACAG
65185871 TGAACCAAAC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:65195905 original size:23 final size:22
Alignment explanation
Indices: 65195875--65195917 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
65195865 AATTAATATA
65195875 TTTTTATTTTTAAAATTTTATT
1 TTTTTATTTTTAAAATTTTATT
*
65195897 TTTTATATTTTTTAAATTTTA
1 TTTT-TATTTTTAAAATTTTA
65195918 AAATTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTTTATTTTTAAAATTTTATT
Found at i:65195924 original size:23 final size:23
Alignment explanation
Indices: 65195874--65195924 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
65195864 TAATTAATAT
* **
65195874 ATTTTTATTTTTAAAATTTTATT
1 ATTTATATTTTTAAAATTTTAAA
* *
65195897 TTTTATATTTTTTAAATTTTAAA
1 ATTTATATTTTTAAAATTTTAAA
65195920 ATTTA
1 ATTTA
65195925 AATCTAATTG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
ATTTATATTTTTAAAATTTTAAA
Found at i:65196988 original size:35 final size:34
Alignment explanation
Indices: 65196935--65197000 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 34
65196925 TTTATATATT
*
65196935 AATATATTAATAAAATTTTATTTTAACTCTAGTA
1 AATATATTAATAAAATTTTATTTTAAATCTAGTA
* *
65196969 AATATATATAATTAAATTTTTTTTTAAATCTA
1 AATATAT-TAATAAAATTTTATTTTAAATCTA
65197001 CCTTCACTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 7 0.25
35 21 0.75
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.50
Consensus pattern (34 bp):
AATATATTAATAAAATTTTATTTTAAATCTAGTA
Found at i:65198043 original size:24 final size:25
Alignment explanation
Indices: 65198014--65198070 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
65198004 ATTATATAAT
65198014 AAATATAATATTTTTA-AAAA-ATTA
1 AAATAT-ATATTTTTATAAAATATTA
* *
65198038 AAATAT-TTTTTTTATAAAATTTTA
1 AAATATATATTTTTATAAAATATTA
65198062 AAATATATA
1 AAATATATA
65198071 ATTATAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 7 0.26
23 4 0.15
24 15 0.56
25 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
AAATATATATTTTTATAAAATATTA
Found at i:65198119 original size:31 final size:31
Alignment explanation
Indices: 65198047--65198130 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 31
65198037 AAAATATTTT
* *
65198047 TTTTATAAAATTTTAAAATATATAATTATAAA
1 TTTTATAAAA-GTTAAAATATATAATTAAAAA
65198079 TTTTA-AAAAGTTAAAATA-AT-ATATAAAAA
1 TTTTATAAAAGTTAAAATATATAAT-TAAAAA
*
65198108 TTATTATAAAAGTTAACATATAT
1 TT-TTATAAAAGTTAAAATATAT
65198131 TTCAATTCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
28 2 0.04
29 9 0.20
30 11 0.24
31 16 0.36
32 7 0.16
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (31 bp):
TTTTATAAAAGTTAAAATATATAATTAAAAA
Found at i:65198456 original size:27 final size:27
Alignment explanation
Indices: 65198418--65198473 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
65198408 AAAAATTGAT
* *
65198418 ATTTTAAGTACCAAATTGAGATAAA-AA
1 ATTTTAAATACCAAAATGAGA-AAATAA
65198445 ATTTTAAATACCAAAATGAGAAAATAA
1 ATTTTAAATACCAAAATGAGAAAATAA
65198472 AT
1 AT
65198474 ATATTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.55, C:0.07, G:0.09, T:0.29
Consensus pattern (27 bp):
ATTTTAAATACCAAAATGAGAAAATAA
Found at i:65207918 original size:136 final size:137
Alignment explanation
Indices: 65207673--65207951 Score: 447
Period size: 136 Copynumber: 2.0 Consensus size: 137
65207663 CGCCCATACA
* * *
65207673 TTCATGCAGATAACCTTCTTTGTGTTAGCCAAACATGGGTCCGTGTTCCGAGATCAATCATTCCT
1 TTCATGCAGACAACCTTCTTTGTGTTAGCCAAACATGGGTCCGTGTTCAGAGATCAATCATTCCG
* * *
65207738 TTCATTTCCTTTGCCATGTTAGCTAGTCTGGTTTGTAATGTACCTGCCTTACTAGAGG-CTACAT
66 TTCATTTCCTTTACCATGCTAGCTAGTCTGGTTTGCAATGTACCTGCCTTACTAGAGGTC-ACAT
65207802 AACCATTG
130 AACCATTG
* *
65207810 -TCATGCAGACAACCTTCTTTGTGTTAGCCAAAC-TCGGGTTCGTGTTCAGAGATTAATCATTCC
1 TTCATGCAGACAACCTTCTTTGTGTTAGCCAAACAT-GGGTCCGTGTTCAGAGATCAATCATTCC
65207873 GTTCATTTCCTTTACCATGCTAGCTAGTCTGGTTTGCAATGTACCTGCCTTACTAGAGGTCACAT
65 GTTCATTTCCTTTACCATGCTAGCTAGTCTGGTTTGCAATGTACCTGCCTTACTAGAGGTCACAT
65207938 AACCATTG
130 AACCATTG
65207946 TTCATG
1 TTCATG
65207952 TACTGCGATC
Statistics
Matches: 131, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
135 1 0.01
136 124 0.95
137 6 0.05
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (137 bp):
TTCATGCAGACAACCTTCTTTGTGTTAGCCAAACATGGGTCCGTGTTCAGAGATCAATCATTCCG
TTCATTTCCTTTACCATGCTAGCTAGTCTGGTTTGCAATGTACCTGCCTTACTAGAGGTCACATA
ACCATTG
Found at i:65215717 original size:18 final size:18
Alignment explanation
Indices: 65215680--65215718 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
65215670 TTGGAAATCA
*
65215680 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
65215698 AAATTATTAAAAAGA-AAT
1 AAATTATT-AAAAGATAAT
65215716 AAA
1 AAA
65215719 AATAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:65216863 original size:57 final size:58
Alignment explanation
Indices: 65216758--65216900 Score: 148
Period size: 57 Copynumber: 2.5 Consensus size: 58
65216748 ACCTCTTTAC
* * * * * *
65216758 AAAAAGGATTTAGCCC-AATGGGTAATCCTGATATAAGTCCTCTCGAGCACATGTTAT
1 AAAAAGGATTTAGCCCGGACGGGTAATCCAGATATAACTCCTCTAGAGCACATGTCAT
* ** *
65216815 AGATTGGATTTAGCCCGGACGGGTAATCCAGATCA-AACTCCT-TAGAGCATATGTCAT
1 AAAAAGGATTTAGCCCGGACGGGTAATCCAGAT-ATAACTCCTCTAGAGCACATGTCAT
* *
65216872 AAAAAGGATTTAGCCTGGACTGGTAATCC
1 AAAAAGGATTTAGCCCGGACGGGTAATCC
65216901 TGTTGTATAC
Statistics
Matches: 69, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
57 49 0.71
58 19 0.28
59 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (58 bp):
AAAAAGGATTTAGCCCGGACGGGTAATCCAGATATAACTCCTCTAGAGCACATGTCAT
Found at i:65220083 original size:40 final size:40
Alignment explanation
Indices: 65220032--65220374 Score: 566
Period size: 40 Copynumber: 8.6 Consensus size: 40
65220022 CATTTGAATG
65220032 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
65220072 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
65220112 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
65220152 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
65220192 ATAT-CGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
65220231 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
65220271 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
65220311 ATATCCGGG-TAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
65220350 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
65220375 ATTGAGCTTG
Statistics
Matches: 285, Mismatches: 14, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
39 71 0.25
40 214 0.75
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:65220364 original size:159 final size:159
Alignment explanation
Indices: 65220030--65220374 Score: 570
Period size: 159 Copynumber: 2.2 Consensus size: 159
65220020 AGCATTTGAA
65220030 TGATAT-CCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
1 TGATATACCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
65220094 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCG
66 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATATATCCG
*
65220159 GGATAAGACCCGAAGGCATTTGTGCGAAT
131 GGATAAGACCCGAAGGCATTCGTGCGAAT
* * *
65220188 TGATATATCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGACG
1 TGATATACCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
*
65220253 GCGTTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGATATATCC
66 GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAA-TTGATATATCC
*
65220317 GGG-TAAGACCCGAAGGCATTCGTGCGAGT
130 GGGATAAGACCCGAAGGCATTCGTGCGAAT
* *
65220346 TGCTATACCCGGGTTAAGACCCGAAGGCA
1 TGATATA-CCGGGCTAAGACCCGAAGGCA
65220375 ATTGAGCTTG
Statistics
Matches: 173, Mismatches: 11, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
158 38 0.22
159 135 0.78
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (159 bp):
TGATATACCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAG
GCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATATATCCG
GGATAAGACCCGAAGGCATTCGTGCGAAT
Found at i:65220397 original size:79 final size:80
Alignment explanation
Indices: 65220032--65220378 Score: 556
Period size: 79 Copynumber: 4.4 Consensus size: 80
65220022 CATTTGAATG
*
65220032 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
65220097 TTTGTGCGAATTGAT
66 TTTGTGCGAATTGAT
* *
65220112 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
65220177 TTTGTGCGAATTGAT
66 TTTGTGCGAATTGAT
* * * *
65220192 ATAT-CGGGCTAAGACCTGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGACGGCG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
65220256 TTTGTGCGAATTGAT
66 TTTGTGCGAATTGAT
65220271 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGATATATCCGGG-TAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAA-TTGATATATCCGGGCTAAGACCCGAAGGC
* * *
65220334 ATTCGTGCGAGTTGCT
65 ATTTGTGCGAATTGAT
* *
65220350 ATACCCGGGTTAAGACCCGAAGGCAATTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTG
65220379 AGCTTGTGGT
Statistics
Matches: 251, Mismatches: 14, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
79 129 0.51
80 122 0.49
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAATTGAT
Found at i:65220397 original size:119 final size:120
Alignment explanation
Indices: 65220032--65220374 Score: 566
Period size: 119 Copynumber: 2.9 Consensus size: 120
65220022 CATTTGAATG
65220032 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
65220097 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
66 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
65220152 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGATATAT-CGGGCTAAGACCTGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
* *
65220216 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
66 TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
65220271 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGATATATCCGGG-TAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGATATATCCGGGCTAAGACCCGAAGGC
* * * * *
65220334 ATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
65 ATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
65220375 ATTGAGCTTG
Statistics
Matches: 207, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
118 2 0.01
119 158 0.76
120 47 0.23
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:65227689 original size:40 final size:40
Alignment explanation
Indices: 65227638--65228142 Score: 832
Period size: 40 Copynumber: 12.6 Consensus size: 40
65227628 CATTTGAATG
65227638 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
65227678 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
65227718 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
65227758 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
65227798 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
65227838 ATATCTGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
65227878 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
65227918 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
65227958 ATATCCGGGATAAGACCCGAAGGCATTTGTGCAAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
65227998 ATATCCGGGCTAAGAGCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
65228038 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
65228078 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
65228118 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
65228143 ATTGAGCTTG
Statistics
Matches: 436, Mismatches: 27, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.00
40 433 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:65231615 original size:21 final size:22
Alignment explanation
Indices: 65231563--65231615 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
65231553 AAATAAAGTC
*
65231563 CATGTA-CAAATATCATGATCT
1 CATGTATCATATATCATGATCT
* *
65231584 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATGATCT
65231606 CATGTATCAT
1 CATGTATCAT
65231616 CATTTACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATGATCT
Found at i:65235693 original size:43 final size:41
Alignment explanation
Indices: 65235560--65235710 Score: 176
Period size: 42 Copynumber: 3.6 Consensus size: 41
65235550 CCGAGACTAT
* *
65235560 GTGTAAGATCATATCTAGGATATGGCATCATTATGAGACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGA-TTC
* * **
65235602 GTGTAAGACCATATCTAGGATACGACATTGATATGAGATTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGA-TTC
* *
65235644 GTGTAAGACCATAGCTAGGCTATTGGCATCAATATGAGATTCC
1 GTGTAAGACCATATCTAGGATA-TGGCATCAATATGAGATT-C
* *
65235687 ATGTAAGACCATATCTGGGATATG
1 GTGTAAGACCATATCTAGGATATG
65235711 ACATTGGTGT
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 59 0.66
43 31 0.34
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (41 bp):
GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTC
Found at i:65235702 original size:85 final size:84
Alignment explanation
Indices: 65235560--65235716 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 84
65235550 CCGAGACTAT
* * * *
65235560 GTGTAAGATCATATCTAGGATATGGCATCATTATGAGACTTCGTGTAAGACCATATCTAGGATAC
1 GTGTAAGACCATAGCTAGGATATGGCATCAATATGAGACTTCATGTAAGACCATATCTAGGATAC
65235625 GACATTGATATGAGATTTC
66 GACATTGATATGAGATTTC
* *
65235644 GTGTAAGACCATAGCTAGGCTATTGGCATCAATATGAGA-TTCCATGTAAGACCATATCTGGGAT
1 GTGTAAGACCATAGCTAGGATA-TGGCATCAATATGAGACTT-CATGTAAGACCATATCTAGGAT
*
65235708 ATGACATTG
64 ACGACATTG
65235717 GTGTGGTACT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
84 21 0.33
85 43 0.67
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (84 bp):
GTGTAAGACCATAGCTAGGATATGGCATCAATATGAGACTTCATGTAAGACCATATCTAGGATAC
GACATTGATATGAGATTTC
Found at i:65246860 original size:19 final size:20
Alignment explanation
Indices: 65246836--65246873 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65246826 GGTACCACCA
65246836 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
65246855 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
65246874 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:65247220 original size:47 final size:47
Alignment explanation
Indices: 65247149--65247271 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
65247139 ATCCATAAAT
*
65247149 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
65247196 GAATTTGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
65247243 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
65247272 CATTTGCATC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65247308 original size:46 final size:45
Alignment explanation
Indices: 65247097--65247313 Score: 192
Period size: 47 Copynumber: 4.7 Consensus size: 45
65247087 TAACCCGCCC
* * *
65247097 CTAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GC--GTTCGCAT
1 CTAA-TGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
65247141 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 -C-T-AATGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * *
65247191 CTCATGAATTTGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CTAATGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * *
65247238 CTCACGAACTCGGACTCAACTCAACGAGTTCGGA-C-ATTTGCAT
1 CTAATGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
65247281 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 -C-TAA-TGAACTCGGACTCAACTCAACGAGTT
65247314 TGGATGCTCA
Statistics
Matches: 147, Mismatches: 15, Indels: 19
0.81 0.08 0.10
Matches are distributed among these distances:
43 6 0.04
44 2 0.01
45 3 0.02
46 54 0.37
47 73 0.50
48 1 0.01
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
CTAATGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:65249300 original size:19 final size:19
Alignment explanation
Indices: 65249262--65249302 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
65249252 TGTTGCCGCT
**
65249262 GCACACTGTCGTTGCTGTC
1 GCACACTGTCGTTGAGGTC
*
65249281 GCACGCTGTCGTTGAGGTC
1 GCACACTGTCGTTGAGGTC
65249300 GCA
1 GCA
65249303 AGATTTTGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.29, G:0.32, T:0.27
Consensus pattern (19 bp):
GCACACTGTCGTTGAGGTC
Found at i:65265122 original size:20 final size:20
Alignment explanation
Indices: 65265094--65265150 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
65265084 AAGACTATGA
*
65265094 ACCACTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
65265114 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
65265134 TCCTTTCCATTTACTTA
1 ACCATTCCATTTACTTA
65265151 GTATAAGCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.23, C:0.32, G:0.00, T:0.46
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:65269074 original size:42 final size:42
Alignment explanation
Indices: 65269024--65269136 Score: 156
Period size: 43 Copynumber: 2.7 Consensus size: 42
65269014 CTGAGATTAT
* *
65269024 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGA-CTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATACGAGATC-AC
* *
65269066 GTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATCAC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATACGAGATCAC
*
65269109 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
65269137 TGGTTCGATA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 26 0.42
43 35 0.56
44 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATACGAGATCAC
Found at i:65272524 original size:46 final size:45
Alignment explanation
Indices: 65272456--65272659 Score: 300
Period size: 46 Copynumber: 4.4 Consensus size: 45
65272446 TTATCTTCGA
* * * * * *
65272456 CATGATGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCTGT
* *
65272502 CATGTTACCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTT-CTGT
65272548 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC-TGT
65272594 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCT-GT
65272640 CATGTTGCCATGGTATCTTT
1 CATGTTGCCATGGTATCTTT
65272660 AAAATCACCC
Statistics
Matches: 145, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
45 5 0.03
46 140 0.97
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (45 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTGT
Found at i:65274960 original size:49 final size:50
Alignment explanation
Indices: 65274862--65274963 Score: 145
Period size: 50 Copynumber: 2.1 Consensus size: 50
65274852 AAACATAATA
*
65274862 GTTATAATTTCTTTTGGAAAGAATATAACGTTCTTTAATACTTTCCATAT
1 GTTATAATTTCTTTTGGAAAGAATATAACGTTATTTAATACTTTCCATAT
* * *
65274912 GTTATAA-TTCTTTTTGGAAAGAATATAATG-TATTTAATGCTTTTCATAT
1 GTTATAATTTC-TTTTGGAAAGAATATAACGTTATTTAATACTTTCCATAT
65274961 GTT
1 GTT
65274964 CTCTATAAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
49 22 0.47
50 25 0.53
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (50 bp):
GTTATAATTTCTTTTGGAAAGAATATAACGTTATTTAATACTTTCCATAT
Found at i:65279938 original size:19 final size:19
Alignment explanation
Indices: 65279914--65279953 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
65279904 GAGTCCGAAG
65279914 AAGCCGAGAGCCATGCTCC
1 AAGCCGAGAGCCATGCTCC
65279933 AAGCCGAGAGCCATGCTCC
1 AAGCCGAGAGCCATGCTCC
65279952 AA
1 AA
65279954 CTTCCGTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.35, G:0.25, T:0.10
Consensus pattern (19 bp):
AAGCCGAGAGCCATGCTCC
Found at i:65283962 original size:48 final size:47
Alignment explanation
Indices: 65283909--65284082 Score: 151
Period size: 50 Copynumber: 3.7 Consensus size: 47
65283899 TTATGAGAGC
* *
65283909 CAGTGTAAGACGATGTTTGGGACATGGCATCGA-GATTGAGATGAGTG
1 CAGTGTAAGACGATGTCTGGGACATGGCATCGACGA-CGAGATGAGTG
* **
65283956 CTAGTGTCAGACG-TGTCTGGGACAT-GCATCGACGACGAGATTTGT-
1 C-AGTGTAAGACGATGTCTGGGACATGGCATCGACGACGAGATGAGTG
* * * * *
65284001 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGATATACTAGAG
1 CAGTGTAAGACGATGTCTGGGACATGGCATCGACGAC-GAGAT--GAGTG
* *
65284050 CTTGTGTAAGACTATGTCTGGGACATGGCATCG
1 C-AGTGTAAGACGATGTCTGGGACATGGCATCG
65284083 GCACCTTACC
Statistics
Matches: 105, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
44 9 0.09
45 15 0.14
46 25 0.24
47 14 0.13
48 12 0.11
49 1 0.01
50 29 0.28
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACGATGTCTGGGACATGGCATCGACGACGAGATGAGTG
Found at i:65284031 original size:46 final size:47
Alignment explanation
Indices: 65283909--65284032 Score: 139
Period size: 46 Copynumber: 2.7 Consensus size: 47
65283899 TTATGAGAGC
* * *
65283909 CAGTGTAAGACGATGTTTGGGACATGGCATCGAGATTGAGATGAGTG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGAGATCGAGATGAGTG
* * **
65283956 CTAGTGTCAGA-CGTGTCTGGGACAT-GCATCGACGA-CGAGATTTGT-
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGA-GATCGAGATGAGTG
65284001 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
65284033 GCACAGATAT
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
44 8 0.12
45 14 0.22
46 20 0.31
47 14 0.22
48 8 0.12
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGAGATCGAGATGAGTG
Found at i:65291625 original size:42 final size:43
Alignment explanation
Indices: 65291527--65291681 Score: 126
Period size: 42 Copynumber: 3.7 Consensus size: 43
65291517 TGAGACATCG
* * *
65291527 TGTAAGACCGTGTCTGGGACA-CAGGCCTCG--ATTGAGATA-A
1 TGTAAGACCCTGTCTGGGACATC-GGCATCGATATTGAGTTACA
* * * *
65291567 AGTATAGGACCATGTCTGGGACATCGGCATCG-TATCTGA-TTTCG
1 TGTA-A-GACCCTGTCTGGGACATCGGCATCGATAT-TGAGTTACA
**
65291611 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAGTTACA
1 TGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAGTTACA
*
65291654 TGTAAGACCAC-GTCCGGGACATCGGCAT
1 TGTAAGACC-CTGTCTGGGACATCGGCAT
65291682 TGTACTTGTT
Statistics
Matches: 91, Mismatches: 15, Indels: 15
0.75 0.12 0.12
Matches are distributed among these distances:
40 3 0.03
41 1 0.01
42 46 0.51
43 34 0.37
44 7 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAGTTACA
Found at i:65291681 original size:43 final size:42
Alignment explanation
Indices: 65291574--65291681 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 42
65291564 TAAAGTATAG
* * *
65291574 GACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTGTAA
1 GACCACGTCTGGGACATCGGCATCGTATCTGATTACATGTAA
**
65291616 GACC-CTGTCTGGGACAGAGGCATCGATAT-TGAGTTACATGTAA
1 GACCAC-GTCTGGGACATCGGCATCG-TATCTGA-TTACATGTAA
*
65291659 GACCACGTCCGGGACATCGGCAT
1 GACCACGTCTGGGACATCGGCAT
65291682 TGTACTTGTT
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 24 0.44
43 29 0.54
44 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (42 bp):
GACCACGTCTGGGACATCGGCATCGTATCTGATTACATGTAA
Found at i:65302466 original size:47 final size:47
Alignment explanation
Indices: 65302406--65302590 Score: 271
Period size: 47 Copynumber: 3.9 Consensus size: 47
65302396 GATAATTGTG
**
65302406 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
65302453 ATGTGAACATGCATATATATGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
65302500 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTAATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
65302547 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
65302591 AATATATGTA
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 122 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:65302497 original size:22 final size:22
Alignment explanation
Indices: 65302422--65302497 Score: 55
Period size: 22 Copynumber: 3.3 Consensus size: 22
65302412 ATGTGCATAT
*
65302422 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCAAATGGCCA
* ** *
65302444 ATGTGATGAATGTGAACAT-GCATA
1 ATGTGAT-AAGGCCAA-ATGGC-CA
*
65302468 TATATGATAAGGCCAAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
65302491 ATGTGAT
1 ATGTGAT
65302498 GAATGTGAGC
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 13 0.34
23 9 0.24
24 10 0.26
25 6 0.16
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCAAATGGCCA
Found at i:65302845 original size:37 final size:37
Alignment explanation
Indices: 65302795--65302907 Score: 190
Period size: 37 Copynumber: 3.1 Consensus size: 37
65302785 GGAAATATAT
*
65302795 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65302832 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* **
65302869 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65302906 TC
1 TC
65302908 TGAGCTAAAG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Done.