Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 201 of 316
Found at i:65304690 original size:40 final size:40
Alignment explanation
Indices: 65304181--65304678 Score: 797
Period size: 40 Copynumber: 12.6 Consensus size: 40
65304171 AGTGGTATAC
*
65304181 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
65304221 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
65304261 CCGGGCTAAGCCCCAAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
65304301 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAA
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
65304341 CCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
65304381 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
65304421 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAC
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
65304461 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
65304501 CCGGGCTAAG-CCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
65304540 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGA--TAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
65304578 CC-GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * * * *
65304617 CCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
** *
65304657 CCGGGCTGGGTCCCGAAGAGCA
1 CCGGGCTAAGCCCCGAAGAGCA
65304679 ATCATGCTGG
Statistics
Matches: 428, Mismatches: 26, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
37 31 0.07
38 5 0.01
39 43 0.10
40 349 0.82
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:65304895 original size:25 final size:25
Alignment explanation
Indices: 65304854--65304903 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
65304844 TGTGCAAATA
65304854 CGAATGAATAAGAGCACTATGTGTG
1 CGAATGAATAAGAGCACTATGTGTG
* *
65304879 CGAATG-ATTAGAGGCACTGTGTGTG
1 CGAATGAATAAGA-GCACTATGTGTG
65304904 TGCGAATTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTGTG
Found at i:65308822 original size:47 final size:47
Alignment explanation
Indices: 65308762--65308946 Score: 271
Period size: 47 Copynumber: 3.9 Consensus size: 47
65308752 GATAATTGTG
** *
65308762 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
65308809 ATGTGAACATGCATATATATGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
65308856 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
65308903 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
65308947 AATATATGTC
Statistics
Matches: 123, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 123 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:65309204 original size:37 final size:37
Alignment explanation
Indices: 65309154--65309226 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
65309144 AATATATTCT
*
65309154 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATAACTACGTGTGGAGATTTTGTCC
*
65309191 GGGTAAGACCCGATAACTTCGTGTGGAGATTTTGTC
1 GGGTAAGACCCGATAACTACGTGTGGAGATTTTGTC
65309227 TGAGCTAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.29
Consensus pattern (37 bp):
GGGTAAGACCCGATAACTACGTGTGGAGATTTTGTCC
Found at i:65312359 original size:35 final size:35
Alignment explanation
Indices: 65312320--65312389 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
65312310 TACGACACTA
*
65312320 TGGAAATTTTTGATGAGATATTGACAATTGTATGG
1 TGGAAATTCTTGATGAGATATTGACAATTGTATGG
65312355 TGGAAATTCTTGATGAGATATTGACAATTGTATGG
1 TGGAAATTCTTGATGAGATATTGACAATTGTATGG
65312390 ATCCCGGTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.04, G:0.26, T:0.39
Consensus pattern (35 bp):
TGGAAATTCTTGATGAGATATTGACAATTGTATGG
Found at i:65331018 original size:33 final size:33
Alignment explanation
Indices: 65330976--65331042 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
65330966 GCATGTAGTA
*
65330976 ACAGTCTGGGCCTGAGCCCTAGT-CAGTATCAGT
1 ACAGTCTGGGCCTGAGCCCTA-TACAGTAACAGT
*
65331009 ACAGTCTGGGCCTTAGCCCTATACAGTAACAGT
1 ACAGTCTGGGCCTGAGCCCTATACAGTAACAGT
65331042 A
1 A
65331043 TGGGCCTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (33 bp):
ACAGTCTGGGCCTGAGCCCTATACAGTAACAGT
Found at i:65331046 original size:28 final size:28
Alignment explanation
Indices: 65331005--65331071 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
65330995 TAGTCAGTAT
* *
65331005 CAGT-ACAGTCTGGGCCTTAGCCCT-ATA
1 CAGTAACAGTATGGGCCTAAG-CCTAATA
65331032 CAGTAACAGTATGGGCCTAAGCCTAATA
1 CAGTAACAGTATGGGCCTAAGCCTAATA
* *
65331060 CAATATCAGTAT
1 CAGTAACAGTAT
65331072 AGTGTAATGC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.21
28 27 0.79
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (28 bp):
CAGTAACAGTATGGGCCTAAGCCTAATA
Found at i:65331296 original size:27 final size:26
Alignment explanation
Indices: 65331220--65331306 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
65331210 AGTGTAGCTG
* *
65331220 CTAGAAACAGTAAATGTGGCAAAGCCA
1 CTAGTAACAGT-AATGTGGCATAGCCA
* *
65331247 CCAGTATCAGTAATTGTGGCATAGCCA
1 CTAGTAACAGTAA-TGTGGCATAGCCA
* *
65331274 CTAGTAACAGTGAATGTGACATAGTCA
1 CTAGTAACAGT-AATGTGGCATAGCCA
65331301 CTAGTA
1 CTAGTA
65331307 CTGTACTTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.04
27 46 0.92
28 2 0.04
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (26 bp):
CTAGTAACAGTAATGTGGCATAGCCA
Found at i:65331477 original size:27 final size:27
Alignment explanation
Indices: 65331447--65331551 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 27
65331437 GGGCATAATC
*
65331447 GTCATTTTACTAAACAGGGGTATTACG
1 GTCATTTTACCAAACAGGGGTATTACG
** * **
65331474 GTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCAAACAGGGGTATTACG
** * *
65331501 GTCATTTTACCCTACATGGGCATTACG
1 GTCATTTTACCAAACAGGGGTATTACG
* *
65331528 GTAATTTTA-CAAACTGGGGGTATT
1 GTCATTTTACCAAAC-AGGGGTATT
65331552 TTGGTAATCT
Statistics
Matches: 60, Mismatches: 17, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
26 3 0.05
27 57 0.95
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCAAACAGGGGTATTACG
Found at i:65334103 original size:43 final size:42
Alignment explanation
Indices: 65333936--65334105 Score: 130
Period size: 43 Copynumber: 4.0 Consensus size: 42
65333926 ATAAGATTTT
* * * *
65333936 GATATGTGATTTCGTGTAAGACCACGTCTGAGA-GTTGGCATC
1 GATATTTGATTT-ATGTAAGACCACGTCTGGGATATTGGCATC
* * *
65333978 GAT-TTGAGATTTACGTGTAAGACCATGTCTGGGATATCGGCATC
1 GATATT-TGATTTA--TGTAAGACCACGTCTGGGATATTGGCATC
* * *** * *
65334022 G-TATTTGATTCCATGTACGACCTTATCTAGGAAATTGGCATC
1 GATATTTGATT-TATGTAAGACCACGTCTGGGATATTGGCATC
*
65334064 GATATTTGATTATATGTAAGACCACGTCTGGGATGTTGGCAT
1 GATATTTGATT-TATGTAAGACCACGTCTGGGATATTGGCAT
65334106 TGTATAAGCT
Statistics
Matches: 97, Mismatches: 24, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
41 1 0.01
42 32 0.33
43 53 0.55
44 11 0.11
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
GATATTTGATTTATGTAAGACCACGTCTGGGATATTGGCATC
Found at i:65344310 original size:79 final size:82
Alignment explanation
Indices: 65344199--65344383 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
65344189 GCTACTCGTT
* * *
65344199 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
65344262 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
65344279 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTATCTCGGACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
65344342 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
65344359 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
65344384 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:65344383 original size:40 final size:40
Alignment explanation
Indices: 65344180--65344383 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
65344170 CGGAATTTAA
** * *
65344180 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGTCATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
65344220 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
65344260 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
65344299 CCGGA-ATTAGTATCTCGGACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
65344339 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
65344379 CCGGA
1 CCGGA
65344384 CATCATTCGA
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
39 38 0.27
40 90 0.65
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:65345598 original size:56 final size:56
Alignment explanation
Indices: 65345512--65345631 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
65345502 TATTAGTTTA
65345512 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
65345568 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
65345624 TTGCCCAT
1 TTGCCCAT
65345632 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:65351574 original size:40 final size:40
Alignment explanation
Indices: 65351344--65351568 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
65351334 TTGAATGATG
* * * *
65351344 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
65351384 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
65351424 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
65351463 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
65351503 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
65351544 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65351569 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:65351586 original size:80 final size:80
Alignment explanation
Indices: 65351344--65351601 Score: 226
Period size: 79 Copynumber: 3.2 Consensus size: 80
65351334 TTGAATGATG
* * * * * *
65351344 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTG-G-TACGAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCA
** *
65351406 TTTGTGCGAGAT-ACTAAT
63 TTTGAACGAG-TGACTAAA
* * *
65351424 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTACGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
65351488 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
65351503 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTACGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
65351567 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
65351583 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
65351602 TACGTGATGT
Statistics
Matches: 152, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 3 0.02
79 77 0.51
80 69 0.45
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTACGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:65354144 original size:23 final size:23
Alignment explanation
Indices: 65354117--65354164 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
65354107 AAGTACGATC
65354117 AATGTTATGGCAAA-AATAATGTT
1 AATGTTATGG-AAATAATAATGTT
65354140 AATGTTATGGAAATAATAATGTT
1 AATGTTATGGAAATAATAATGTT
65354163 AA
1 AA
65354165 CCCTGCAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.46, C:0.02, G:0.17, T:0.35
Consensus pattern (23 bp):
AATGTTATGGAAATAATAATGTT
Found at i:65368217 original size:79 final size:81
Alignment explanation
Indices: 65368095--65368279 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
65368085 TTGAATGATG
* *
65368095 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAG-TCCCGAAGGCAA
65368158 TTGTGCGAGATACTA-A
65 TTGTGCGAGATACTATA
* * * **
65368174 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAA
*
65368237 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
65368254 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65368280 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:65368293 original size:40 final size:40
Alignment explanation
Indices: 65368096--65368279 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
65368086 TGAATGATGT
* * * *
65368096 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
65368136 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
65368176 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
65368214 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65368255 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
65368280 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65368301 original size:79 final size:79
Alignment explanation
Indices: 65368148--65368312 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
65368138 GGACTAAGAT
* * **
65368148 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
65368213 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
65368227 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
65368290 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
65368306 CCGAAGG
1 CCGAAGG
65368313 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:65375386 original size:79 final size:81
Alignment explanation
Indices: 65375264--65375448 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
65375254 TTGAATGATG
* *
65375264 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAG-TCCCGAAGGCAA
65375327 TTGTGCGAGATACTA-A
65 TTGTGCGAGATACTATA
* * * **
65375343 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAA
*
65375406 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
65375423 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65375449 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:65375462 original size:40 final size:40
Alignment explanation
Indices: 65375265--65375448 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
65375255 TGAATGATGT
* * * *
65375265 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
65375305 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
65375345 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
65375383 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65375424 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
65375449 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65375470 original size:79 final size:79
Alignment explanation
Indices: 65375317--65375481 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
65375307 GGACTAAGAT
* * **
65375317 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
65375382 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
65375396 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
65375459 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
65375475 CCGAAGG
1 CCGAAGG
65375482 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:65388891 original size:27 final size:27
Alignment explanation
Indices: 65388861--65389038 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65388851 ATATTGAGTC
* * * *
65388861 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
65388888 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65388915 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65388943 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65388970 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65388997 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65389024 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65389039 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65389000 original size:82 final size:81
Alignment explanation
Indices: 65388882--65389037 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65388872 TGCTATATAA
* *
65388882 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65388947 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65388964 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65389028 CACTTAGTGC
65 CACTTAGTGC
65389038 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65397077 original size:27 final size:27
Alignment explanation
Indices: 65397047--65397224 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65397037 ATATTGAGTC
* * * *
65397047 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
65397074 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65397101 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65397129 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65397156 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65397183 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65397210 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65397225 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65397186 original size:82 final size:81
Alignment explanation
Indices: 65397068--65397223 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65397058 TGCTATATAA
* *
65397068 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65397133 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65397150 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65397214 CACTTAGTGC
65 CACTTAGTGC
65397224 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65411472 original size:26 final size:26
Alignment explanation
Indices: 65411436--65411490 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
65411426 CATTAGGGTG
* *
65411436 TAGCAGGCTTTGTGCCGGTGTATATT
1 TAGCAAGCTTTGTGCCGATGTATATT
* *
65411462 TAGCAAGCTTTGTGCTGATGTTTATT
1 TAGCAAGCTTTGTGCCGATGTATATT
65411488 TAG
1 TAG
65411491 TAGGCATTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.18, C:0.13, G:0.27, T:0.42
Consensus pattern (26 bp):
TAGCAAGCTTTGTGCCGATGTATATT
Found at i:65412219 original size:29 final size:30
Alignment explanation
Indices: 65412187--65412246 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
65412177 TAAAGTGATT
*
65412187 TTGAGTAAAAATGTATATT-AGGGATT-AAA
1 TTGAG-AAAAATGTAAATTGAGGGATTGAAA
**
65412216 TTGAGAAATTTGTAAATTGAGGGATTGAAA
1 TTGAGAAAAATGTAAATTGAGGGATTGAAA
65412246 T
1 T
65412247 GTGAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 10 0.38
29 12 0.46
30 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (30 bp):
TTGAGAAAAATGTAAATTGAGGGATTGAAA
Found at i:65412829 original size:47 final size:47
Alignment explanation
Indices: 65412771--65412900 Score: 138
Period size: 47 Copynumber: 2.8 Consensus size: 47
65412761 GTGTGAATAA
*
65412771 TACCTTGATTTGGCTACGAGCCATGGTATAGGTATTCAGAGAGGA-GT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCAGAGA-GACGT
* * * * * * *
65412818 TACCTTGATTTGGCTACGGGCAATTGTATAAGTACTCTGGGATACGT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCAGAGAGACGT
* *
65412865 TACTTTGATTTGTCTAC-AGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGA-GCCATGGTATAGGTACT
65412901 AATCGATTAA
Statistics
Matches: 67, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
46 1 0.01
47 66 0.99
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGAGCCATGGTATAGGTACTCAGAGAGACGT
Found at i:65413842 original size:23 final size:23
Alignment explanation
Indices: 65413812--65413868 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
65413802 TCCCCTAGGG
65413812 TACCCTTTCGAATTAAGTCAGTA
1 TACCCTTTCGAATTAAGTCAGTA
65413835 TACCCTTTCGAATTAAGTCAGTA
1 TACCCTTTCGAATTAAGTCAGTA
65413858 TACCCTTTCGA
1 TACCCTTTCGA
65413869 TTTAGTCCCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (23 bp):
TACCCTTTCGAATTAAGTCAGTA
Found at i:65421573 original size:27 final size:27
Alignment explanation
Indices: 65421280--65421574 Score: 326
Period size: 27 Copynumber: 11.0 Consensus size: 27
65421270 AAATGGCAAA
* *
65421280 AATA-CCCTCATAGGGTAAAATGACCGA
1 AATACCCCT-ATAGGGTAAAATGACTGT
* *
65421307 AATACCCCGATAGGGTAAAATGA-TCGA
1 AATACCCCTATAGGGTAAAATGACT-GT
* *
65421334 AATACCCCTATAAGGTGAAATGACTGT
1 AATACCCCTATAGGGTAAAATGACTGT
* * *
65421361 AATACCCTTGTAGGGTAAGATGACTGT
1 AATACCCCTATAGGGTAAAATGACTGT
*
65421388 AATACCCCTGTAGGGTAAAATGACTGT
1 AATACCCCTATAGGGTAAAATGACTGT
* *
65421415 AATACCCCTATAGGGTAAAATGACCGA
1 AATACCCCTATAGGGTAAAATGACTGT
* **
65421442 AATACCCCCATAGGGTAAAATGAC-CA
1 AATACCCCTATAGGGTAAAATGACTGT
* * *
65421468 AATACCCCCATAGGGTAAAATGACCGA
1 AATACCCCTATAGGGTAAAATGACTGT
* *
65421495 AATACCCCTATAAGGTAAATTGACTGT
1 AATACCCCTATAGGGTAAAATGACTGT
* *
65421522 AATACCCCTGTAGGGTAAAATGACTTT
1 AATACCCCTATAGGGTAAAATGACTGT
* * *
65421549 AATACCCTTGTAAGGTAAAATGACTG
1 AATACCCCTATAGGGTAAAATGACTG
65421575 ATTTGCCTAC
Statistics
Matches: 233, Mismatches: 31, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 25 0.11
27 204 0.88
28 4 0.02
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACTGT
Found at i:65428380 original size:25 final size:23
Alignment explanation
Indices: 65428352--65428402 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
65428342 AGCTTTCTGA
*
65428352 TATGGATCTTTGTGAACTTCCCGAT
1 TATGGATC-TTATGAACTTCCC-AT
* *
65428377 TATGGCTCTTATGAGCTTCCCAT
1 TATGGATCTTATGAACTTCCCAT
65428400 TAT
1 TAT
65428403 ATAGCCTGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 5 0.22
24 11 0.48
25 7 0.30
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.41
Consensus pattern (23 bp):
TATGGATCTTATGAACTTCCCAT
Found at i:65432918 original size:33 final size:33
Alignment explanation
Indices: 65432881--65432968 Score: 124
Period size: 33 Copynumber: 2.7 Consensus size: 33
65432871 TACCTAAAAG
*
65432881 GTACAACTGGAAAAGGAAATGTACACTGTATGT
1 GTACAACTTGAAAAGGAAATGTACACTGTATGT
* * * *
65432914 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTGTATGT
65432947 GTAC-ACTTGAAAAGGAAATGTA
1 GTACAACTTGAAAAGGAAATGTA
65432969 TGCCTTGTGT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 16 0.33
33 32 0.67
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (33 bp):
GTACAACTTGAAAAGGAAATGTACACTGTATGT
Found at i:65432977 original size:32 final size:31
Alignment explanation
Indices: 65432881--65432981 Score: 105
Period size: 33 Copynumber: 3.1 Consensus size: 31
65432871 TACCTAAAAG
* *
65432881 GTACAACTGGAAAAGGAAATGTACACTGTATGT
1 GTACAACTTGAAAAGGAAATGTAC-CT-TGTGT
* *
65432914 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTAC-C-TTGTGT
65432947 GTAC-ACTTGAAAAGGAAATGTATGCCTTGTGT
1 GTACAACTTGAAAAGGAAATGTA--CCTTGTGT
65432979 GTA
1 GTA
65432982 AAATGTGAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
32 25 0.42
33 32 0.54
34 2 0.03
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (31 bp):
GTACAACTTGAAAAGGAAATGTACCTTGTGT
Found at i:65433023 original size:31 final size:31
Alignment explanation
Indices: 65432986--65433150 Score: 190
Period size: 31 Copynumber: 5.4 Consensus size: 31
65432976 TGTGTAAAAT
*
65432986 GTGAAAAGTGGTAACTTCGGCCACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCCACCTGATCA
* * *
65433017 GTGAAAAGTGGTAGCTTGGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCCACCTGATCA
*
65433048 GTGAAAAGTGGTAGCTTCAG-C-CCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCCACCTGATCA
* * *
65433077 GTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCCACCTGATCA
* ** * *
65433108 GTGAAAAGTGGTAGCTCCATCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCCACCTGATCA
*
65433139 GTGAATAGTGGT
1 GTGAAAAGTGGT
65433151 GGTTTCAGCT
Statistics
Matches: 115, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
29 25 0.22
31 90 0.78
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCCACCTGATCA
Found at i:65433081 original size:60 final size:61
Alignment explanation
Indices: 65432986--65433150 Score: 233
Period size: 60 Copynumber: 2.7 Consensus size: 61
65432976 TGTGTAAAAT
* * *
65432986 GTGAAAAGTGGTAACTTCGGCCACCTGATCAGTGAAAAGTGGTAGCTTGGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCAG-CACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATTA
*
65433048 GTGAAAAGTGGTAGCTTCAGC-CCTGATCAGTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCAGCACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATTA
* * * *
65433108 GTGAAAAGTGGTAGCTCCATCTACCTGATTAGTGAATAGTGGT
1 GTGAAAAGTGGTAGCTTCAGC-ACCTGATCAGTGAAAAGTGGT
65433151 GGTTTCAGCT
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
60 56 0.61
61 1 0.01
62 35 0.38
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (61 bp):
GTGAAAAGTGGTAGCTTCAGCACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATTA
Found at i:65433141 original size:91 final size:91
Alignment explanation
Indices: 65432986--65433159 Score: 249
Period size: 91 Copynumber: 1.9 Consensus size: 91
65432976 TGTGTAAAAT
* ***
65432986 GTGAAAAGTGGTAACTTCGGCCACCTGATCAGTGAAAAGTGGTAGCTTGGGCTACCTGATTAGTG
1 GTGAAAAGTAGTAACTTCGGCCACCTGATCAGTGAAAAGTGGTAGCTCCAGCTACCTGATTAGTG
65433051 AAAAGTGGTAGCTTCAGCCCTGATCA
66 AAAAGTGGTAGCTTCAGCCCTGATCA
* * * *
65433077 GTGAAAAGTAGTAGCTTCGGCTACCTGATTAGTGAAAAGTGGTAGCTCCATCTACCTGATTAGTG
1 GTGAAAAGTAGTAACTTCGGCCACCTGATCAGTGAAAAGTGGTAGCTCCAGCTACCTGATTAGTG
* * *
65433142 AATAGTGGTGGTTTCAGC
66 AAAAGTGGTAGCTTCAGC
65433160 TACAAGTGAC
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
91 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (91 bp):
GTGAAAAGTAGTAACTTCGGCCACCTGATCAGTGAAAAGTGGTAGCTCCAGCTACCTGATTAGTG
AAAAGTGGTAGCTTCAGCCCTGATCA
Found at i:65433314 original size:27 final size:27
Alignment explanation
Indices: 65433255--65433316 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
65433245 TTGAACTATG
* * *
65433255 GAAAAATGATAAAGTGTGCCAATCATG
1 GAAAAGTGATAAAGTGTGCCAAACATA
* *
65433282 GAAAAGTGATATAGTGTGTCAAACATA
1 GAAAAGTGATAAAGTGTGCCAAACATA
*
65433309 GCAAAGTG
1 GAAAAGTG
65433317 TTCAGTGATC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.23
Consensus pattern (27 bp):
GAAAAGTGATAAAGTGTGCCAAACATA
Found at i:65433409 original size:34 final size:34
Alignment explanation
Indices: 65433371--65433444 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
65433361 CACGACAAAG
*
65433371 TGTGAAACATAGGTATGGTATTTCCATACGGAGC
1 TGTGAAACATAGGTAGGGTATTTCCATACGGAGC
* * *
65433405 TGTGAAACGTAGGTAGGGTATTTCCATACTGAGT
1 TGTGAAACATAGGTAGGGTATTTCCATACGGAGC
65433439 TGTGAA
1 TGTGAA
65433445 TCGTGGCACT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.31
Consensus pattern (34 bp):
TGTGAAACATAGGTAGGGTATTTCCATACGGAGC
Found at i:65440081 original size:24 final size:25
Alignment explanation
Indices: 65439991--65440087 Score: 80
Period size: 24 Copynumber: 4.1 Consensus size: 25
65439981 TTCCCGTTAC
* *
65439991 ATGGCTCTTTGTGAGCGTCCT-AAT
1 ATGGCTCTTTGTGAGCTTCCTGATT
* *
65440015 A-GGCTATTCGTGAGCTT-CTCGA-T
1 ATGGCTCTTTGTGAGCTTCCT-GATT
* **
65440038 ATGGTTCTTTGTGAAATTCCTGATT
1 ATGGCTCTTTGTGAGCTTCCTGATT
65440063 ATGGCTC-TTGTGAGCTTCCTG-TT
1 ATGGCTCTTTGTGAGCTTCCTGATT
65440086 AT
1 AT
65440088 ATAGCCCAGA
Statistics
Matches: 57, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
22 2 0.04
23 19 0.33
24 27 0.47
25 9 0.16
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (25 bp):
ATGGCTCTTTGTGAGCTTCCTGATT
Found at i:65450648 original size:30 final size:30
Alignment explanation
Indices: 65450612--65450672 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
65450602 TTAATTAAGA
65450612 AAGAAATTTTGATTAATTCAACTGAGGGTT
1 AAGAAATTTTGATTAATTCAACTGAGGGTT
65450642 AAGAAATTTTGATTAATTCAACTGAGGGTT
1 AAGAAATTTTGATTAATTCAACTGAGGGTT
65450672 A
1 A
65450673 GACGTTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.36
Consensus pattern (30 bp):
AAGAAATTTTGATTAATTCAACTGAGGGTT
Found at i:65467400 original size:25 final size:25
Alignment explanation
Indices: 65467354--65467404 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
65467344 CTTAAAATAC
* * **
65467354 GAAAAATGACTATTTTGGCCCTAGG
1 GAAAAATGACCATTATACCCCTAGG
65467379 GAAAAATGACCATTATACCCCTAGG
1 GAAAAATGACCATTATACCCCTAGG
65467404 G
1 G
65467405 TTTAATTTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (25 bp):
GAAAAATGACCATTATACCCCTAGG
Found at i:65467455 original size:10 final size:10
Alignment explanation
Indices: 65467434--65467480 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
65467424 CATGAGATTT
65467434 TGATAT-ACA
1 TGATATGACA
65467443 TGATATGACA
1 TGATATGACA
65467453 TGATATGACA
1 TGATATGACA
65467463 TGATATGCACA
1 TGATATG-ACA
65467474 TGATATG
1 TGATATG
65467481 TTAAGAGATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.56
11 10 0.28
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:65467476 original size:21 final size:21
Alignment explanation
Indices: 65467434--65467501 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
65467424 CATGAGATTT
65467434 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
65467453 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
** * *
65467474 TGATATGTTAAGAGATGCACA
1 TGATATGACATGATATGCACA
65467495 TGATATG
1 TGATATG
65467502 TTATGGGTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 10 0.23
21 27 0.63
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:65467591 original size:25 final size:25
Alignment explanation
Indices: 65467536--65467608 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
65467526 GGAGGAAGTG
* * *
65467536 CAAAAAGTGCTTTACCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTAAC
* *
65467561 CGAAAAGGGCTTTGCCCCAGTTAAT
1 CAAAAAGGGCTTTGCCCCAGTTAAC
*
65467586 CAAAAAGGGCTTTGCCCTAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
65467609 TTAAAAGAGG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAC
Found at i:65467620 original size:24 final size:25
Alignment explanation
Indices: 65467536--65467620 Score: 70
Period size: 25 Copynumber: 3.4 Consensus size: 25
65467526 GGAGGAAGTG
* * *
65467536 CAAAA-AGTGCTTTACCCCAGTTTAC
1 CAAAAGAG-GCTTTGCCCCAGTTAAT
65467561 CGAAAAG-GGCTTTGCCCCAGTTAAT
1 C-AAAAGAGGCTTTGCCCCAGTTAAT
*
65467586 CAAAA-AGGGCTTTGCCCTAGTT-AT
1 CAAAAGA-GGCTTTGCCCCAGTTAAT
*
65467610 TAAAAGAGGCT
1 CAAAAGAGGCT
65467621 AGGCCTCTAG
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
24 14 0.28
25 31 0.62
26 5 0.10
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTAAT
Found at i:65475457 original size:10 final size:10
Alignment explanation
Indices: 65475436--65475502 Score: 73
Period size: 10 Copynumber: 6.6 Consensus size: 10
65475426 CATGAGATTT
65475436 TGATAT-ACA
1 TGATATGACA
65475445 TGATATGACA
1 TGATATGACA
65475455 TGATATGACA
1 TGATATGACA
65475465 TGATATGCACA
1 TGATATG-ACA
* **
65475476 TGATGTGTTA
1 TGATATGACA
*
65475486 TGAGATGCACA
1 TGATATG-ACA
65475497 TGATAT
1 TGATAT
65475503 ACTCATTATA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
9 6 0.13
10 26 0.55
11 15 0.32
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:65475478 original size:21 final size:21
Alignment explanation
Indices: 65475436--65475502 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
65475426 CATGAGATTT
65475436 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
65475455 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
* ** *
65475476 TGATGTGTTATGAGATGCACA
1 TGATATGACATGATATGCACA
65475497 TGATAT
1 TGATAT
65475503 ACTCATTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
19 6 0.15
20 10 0.24
21 25 0.61
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:65475584 original size:25 final size:25
Alignment explanation
Indices: 65475548--65475620 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 25
65475538 GGAGGAAGTG
*
65475548 CAAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTAAC
* *
65475573 CGAAAAGGGCTTTGCCCCAGTTAAT
1 CAAAAAGGGCTTTGCCCCAGTTAAC
65475598 CAAAAAGGGCTTTGCCCCAGTTA
1 CAAAAAGGGCTTTGCCCCAGTTA
65475621 TTAAAAGAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTAAC
Found at i:65475632 original size:24 final size:23
Alignment explanation
Indices: 65475550--65475632 Score: 103
Period size: 25 Copynumber: 3.4 Consensus size: 23
65475540 AGGAAGTGCA
*
65475550 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAG-TTATC
65475574 GAAAAGGGCTTTGCCCCAGTTAATC
1 -AAAAGGGCTTTGCCCCAGTT-ATC
*
65475599 AAAAAGGGCTTTGCCCCAGTTATT
1 -AAAAGGGCTTTGCCCCAGTTATC
65475623 AAAAGAGGCT
1 AAAAG-GGCT
65475633 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 5 0.09
24 8 0.15
25 40 0.75
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:65483991 original size:20 final size:21
Alignment explanation
Indices: 65483956--65484008 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
65483946 CCAGTTACAG
*
65483956 GGGGACACGTCTGTGTGAC-CT
1 GGGG-CACGCCTGTGTGACTCT
*
65483977 GGGGCATGCCTGTGTGACTCT
1 GGGGCACGCCTGTGTGACTCT
65483998 GGGGCACGCCT
1 GGGGCACGCCT
65484009 ATGCTGCAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.11, C:0.26, G:0.40, T:0.23
Consensus pattern (21 bp):
GGGGCACGCCTGTGTGACTCT
Found at i:65486955 original size:48 final size:48
Alignment explanation
Indices: 65486848--65486972 Score: 135
Period size: 48 Copynumber: 2.6 Consensus size: 48
65486838 AGATGTCAAC
* *
65486848 GCCATGTCCCAGACATAGTCTTACACTGGCTTTCATATAGCAAGGCCGAT
1 GCCATGTCCCAGACAGA-TCTTACACTGGCTCTCATATAGC-AGGCCGAT
* * * *
65486898 GTCATGTCCCAGACAGATCTTACACTGGCTCTCATCTATC-GTGTCGAT
1 GCCATGTCCCAGACAGATCTTACACTGGCTCTCATATAGCAG-GCCGAT
* * *
65486946 GCCATGTCCCGGATAGGTCTTACACTG
1 GCCATGTCCCAGACAGATCTTACACTG
65486973 ACACACGACA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
47 1 0.02
48 28 0.44
49 20 0.31
50 15 0.23
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACAGATCTTACACTGGCTCTCATATAGCAGGCCGAT
Found at i:65487066 original size:48 final size:47
Alignment explanation
Indices: 65486992--65487114 Score: 126
Period size: 46 Copynumber: 2.6 Consensus size: 47
65486982 AAGCTGACGC
* * * * * *
65486992 CATGTCCCAAACATGTGTTACCCTAGCTTGTC-TACTGCAAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTCGT-CT-CAAGGCCGATA
*
65487040 CATG-CCTCAGACATGTCTTACACTAGC-TCTCGTCTCAATGCCGATA
1 CATGTCC-CAGACATGTCTTACACTAGCTTCTCGTCTCAAGGCCGATA
*
65487086 CATGTCCCAGACATGTCTTACACTGGCTT
1 CATGTCCCAGACATGTCTTACACTAGCTT
65487115 AAACATCTCG
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
46 31 0.49
47 10 0.16
48 22 0.35
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTCGTCTCAAGGCCGATA
Found at i:65491554 original size:15 final size:15
Alignment explanation
Indices: 65491534--65491598 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
65491524 GTATCTTGGG
65491534 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
65491549 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
65491564 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
*
65491579 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
65491593 TTTCTT
1 TTTCTT
65491599 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 12 0.29
15 25 0.61
16 4 0.10
ACGTcount: A:0.11, C:0.15, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:65491566 original size:30 final size:31
Alignment explanation
Indices: 65491530--65491598 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 31
65491520 TATCGTATCT
* *
65491530 TGGGTTTCTTTATTC-TGGATTTCTTTATTC
1 TGGGTTTCTTCAATCTTGGATTTCTTTATTC
65491560 TGGGTTTC-TCAATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCAATCTTGGATTTCTTTATTC
*
65491590 -GGTTTTCTT
1 TGGGTTTCTT
65491599 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.29
30 24 0.71
ACGTcount: A:0.10, C:0.14, G:0.17, T:0.58
Consensus pattern (31 bp):
TGGGTTTCTTCAATCTTGGATTTCTTTATTC
Found at i:65493649 original size:28 final size:28
Alignment explanation
Indices: 65493617--65493714 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
65493607 AATGAGATTG
65493617 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
65493645 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
65493673 GCACTAAGTGTGCGAGTTTGATTAT-TAA
1 GCACTAAGTGTGCGAGTTTAATTGTAT-A
65493701 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
65493715 GACTTACTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 1 0.01
28 66 0.99
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:65505252 original size:27 final size:27
Alignment explanation
Indices: 65505192--65505245 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
65505182 TCATACATCC
*
65505192 CATAGGGGCATAACAGTTATTTTATCA
1 CATAGGGGCATAACAGTCATTTTATCA
* *
65505219 CACAGGGGCATAATAGTCATTTTATCA
1 CATAGGGGCATAACAGTCATTTTATCA
65505246 TTTAGGGTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (27 bp):
CATAGGGGCATAACAGTCATTTTATCA
Found at i:65507461 original size:37 final size:37
Alignment explanation
Indices: 65507411--65507489 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65507401 TTATTACGAA
* * *
65507411 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
65507448 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
65507485 GTCTT
1 GTCTT
65507490 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:65507885 original size:51 final size:47
Alignment explanation
Indices: 65507608--65507963 Score: 514
Period size: 47 Copynumber: 7.4 Consensus size: 47
65507598 CCTTTCGAGA
* * * *
65507608 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65507655 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
65507702 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65507749 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
65507796 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65507843 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
65507894 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
65507945 CTTATCACATATATACACT
1 CTTATCACATATATACACT
65507964 CTCTTGGCTG
Statistics
Matches: 287, Mismatches: 16, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
47 188 0.66
48 1 0.00
49 11 0.04
50 1 0.00
51 86 0.30
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65511833 original size:48 final size:48
Alignment explanation
Indices: 65511752--65511945 Score: 289
Period size: 48 Copynumber: 4.0 Consensus size: 48
65511742 CACGATGTCT
* * *
65511752 CATATCGATGCCAATGCCATATCCCAAATATGGTCTTGCATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* ** *
65511800 AATATCGATGCCAATGCCATGTTTCAGACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* *
65511848 CATATCTATGTCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* *
65511896 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTTCATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
65511944 CA
1 CA
65511946 CATAACCCTA
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 129 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (48 bp):
CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
Found at i:65517377 original size:40 final size:41
Alignment explanation
Indices: 65517325--65517420 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
65517315 TATCTCAGTA
65517325 TCGCACACTTAGTGCCTCA-TATAGCCAAAGCTA-TTCCAAC
1 TCGCACACTTAGTGCCT-ATTATAGCCAAAGCTATTTCCAAC
* * *
65517365 TCGCACACTTAGT-TCTATTTGTAGCCAAAGCTATTTCGAAC
1 TCGCACACTTAGTGCCTA-TTATAGCCAAAGCTATTTCCAAC
65517406 -CGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
65517421 GAACATAGTC
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 38 0.79
41 7 0.15
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (41 bp):
TCGCACACTTAGTGCCTATTATAGCCAAAGCTATTTCCAAC
Found at i:65517471 original size:35 final size:35
Alignment explanation
Indices: 65517425--65517497 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
65517415 AGTGCCGAAC
65517425 ATAGTCGATTATAATCATGATCAAATCGTAATCAA
1 ATAGTCGATTATAATCATGATCAAATCGTAATCAA
*
65517460 ATAGTCGATTATAATCATGATCGAATCGTAATCAA
1 ATAGTCGATTATAATCATGATCAAATCGTAATCAA
65517495 ATA
1 ATA
65517498 TTTGTACAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (35 bp):
ATAGTCGATTATAATCATGATCAAATCGTAATCAA
Found at i:65531603 original size:48 final size:48
Alignment explanation
Indices: 65531540--65531720 Score: 222
Period size: 48 Copynumber: 3.8 Consensus size: 48
65531530 CATGTCAATA
* * * * * *
65531540 CCAATGCCATATCCCATATACGATCTTACATGGGATCAAATATCGATT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATATCGATG
* * *
65531588 CCAATTCCATGTCCCAGACATGGTCTTACATGGG-TCATATATCTATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATATCGATG
* * *
65531635 CCAATGCCATGTCCCA-AGCATGTTCTTACATGGGATCACATATTGATG
1 CCAATGCCATGTCCCAGA-CATGGTCTTACATGGGATCAAATATCGATG
*
65531683 CCAATGCCATGTCCTAGACATGGTCTTACATGGGATCA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
65531721 CAAATAACCC
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
46 1 0.01
47 40 0.35
48 72 0.63
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATATCGATG
Found at i:65534034 original size:20 final size:20
Alignment explanation
Indices: 65534009--65534050 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
65533999 ACGGACTAAA
* *
65534009 ATGAAAAGTTGTGAAATTTG
1 ATGAAAAATTCTGAAATTTG
*
65534029 ATGAAAAATTCTGAATTTTG
1 ATGAAAAATTCTGAAATTTG
65534049 AT
1 AT
65534051 TAATACATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTCTGAAATTTG
Found at i:65542148 original size:47 final size:44
Alignment explanation
Indices: 65542079--65542201 Score: 131
Period size: 46 Copynumber: 2.7 Consensus size: 44
65542069 ATGGTTGAGT
* * *
65542079 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT--GATG-AA-TAGGAA
* * *
65542126 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATAGGAA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGATGAATAGGAA
65542170 TGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 T--CCGAGCTCGTTGAGTTGAGTCCGAGTTCA
65542202 TTTATGGGCG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 6 0.09
45 1 0.02
46 31 0.47
47 27 0.41
48 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (44 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGATGAATAGGAA
Found at i:65544090 original size:23 final size:23
Alignment explanation
Indices: 65544058--65544163 Score: 63
Period size: 24 Copynumber: 4.5 Consensus size: 23
65544048 CTGAGTTGAT
* *
65544058 AAACAATAAGCTTTATTGAGCTA
1 AAACAGTAAGCTTCATTGAGCTA
** *
65544081 AAACAGTAAGCTCTTTTTCAAGCT-
1 AAACAGTAAGCT-TCATT-GAGCTA
* * *
65544105 GAACAGTAAGC-TCATACGAGCTG
1 AAACAGTAAGCTTCAT-TGAGCTA
* *
65544128 AAACAGTAAGCTCCAATGAGCTAA
1 AAACAGTAAGCTTCATTGAGCT-A
*
65544152 AAATAGTAAGCT
1 AAACAGTAAGCT
65544164 CTTTCGAGCT
Statistics
Matches: 63, Mismatches: 14, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
22 6 0.10
23 26 0.41
24 27 0.43
25 4 0.06
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.25
Consensus pattern (23 bp):
AAACAGTAAGCTTCATTGAGCTA
Found at i:65546802 original size:21 final size:20
Alignment explanation
Indices: 65546764--65546802 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
65546754 TCCTTAAAAC
* *
65546764 AGGGCACACGCCCGTGTGGA
1 AGGGCACACACCCATGTGGA
65546784 AGGGCAACACACCCATGTG
1 AGGGC-ACACACCCATGTG
65546803 ACCAACTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.26, C:0.31, G:0.33, T:0.10
Consensus pattern (20 bp):
AGGGCACACACCCATGTGGA
Found at i:65547996 original size:47 final size:48
Alignment explanation
Indices: 65547942--65548166 Score: 200
Period size: 47 Copynumber: 4.8 Consensus size: 48
65547932 TAAGGTGCCA
*
65547942 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAATCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCTAATCG
* **
65547989 ATGCCATGTCCCAGACATGGTCTTACACTGTCT-ATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-TAATCG
* * * * **
65548037 AT-ACATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCTAATC-G
* * * **
65548083 ATG-TATGTCCTAGACAT-GTCTTACACTAGCTC-TGGTCT-TAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCTAAT--CG
*
65548129 ATGCCAAGTCCCAGACATGGTCTTACACTGGCTC-TCAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT
65548167 AATGTGGCTG
Statistics
Matches: 145, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
45 4 0.03
46 56 0.39
47 64 0.44
48 21 0.14
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCTAATCG
Found at i:65548188 original size:47 final size:45
Alignment explanation
Indices: 65547946--65548203 Score: 184
Period size: 46 Copynumber: 5.5 Consensus size: 45
65547936 GTGCCAATGC
* **
65547946 CATGTCCCAGACATGGTCTTACACTGG--CTCATATCTCAAATCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATGT-AGCT-GATG
* * * * *
65547992 CCATGTCCCAGACATGGTCTTACACTGTCTATCATCTCGTAGCCGATA
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAT-GTAGCTGATG
* *
65548040 CATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCG-AGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATAT-GTA-GCTGATG
* * * ** * *
65548086 TATGTCCTAGACATGTCTTACACTAGCTCTGGTCT-TAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATATGT-A-GCTGATG
* *
65548132 CCAAGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-ATGTAGCTGATG
65548180 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
65548204 AGCCAGCAAT
Statistics
Matches: 171, Mismatches: 28, Indels: 25
0.76 0.12 0.11
Matches are distributed among these distances:
45 2 0.01
46 70 0.41
47 65 0.38
48 25 0.15
49 7 0.04
50 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATATGTAGCTGATG
Found at i:65557023 original size:28 final size:27
Alignment explanation
Indices: 65556966--65557117 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
65556956 TAAATTGTGC
* *
65556966 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
65556993 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
65557021 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
65557048 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
65557076 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
65557103 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65557118 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:65557031 original size:55 final size:55
Alignment explanation
Indices: 65556966--65557117 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
65556956 TAAATTGTGC
* *
65556966 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
65557021 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
65557076 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
65557118 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:65582768 original size:10 final size:9
Alignment explanation
Indices: 65582754--65582806 Score: 58
Period size: 9 Copynumber: 6.0 Consensus size: 9
65582744 ATTTAAATAA
*
65582754 ATTTTTATT
1 ATTTTTAAT
65582763 ATTTTTAAT
1 ATTTTTAAT
65582772 ATTTTT-AT
1 ATTTTTAAT
65582780 -TTTTATAA-
1 ATTTT-TAAT
65582788 ATTTTTAAT
1 ATTTTTAAT
65582797 AATTTTTAAT
1 -ATTTTTAAT
65582807 TGAATTAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
7 4 0.11
8 6 0.16
9 19 0.50
10 9 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:65582781 original size:15 final size:16
Alignment explanation
Indices: 65582750--65582794 Score: 63
Period size: 17 Copynumber: 2.7 Consensus size: 16
65582740 ATAGATTTAA
65582750 ATAAATTTTTATTATTT
1 ATAAATTTTTATT-TTT
*
65582767 TTAATATTTTTATTTTT
1 ATAA-ATTTTTATTTTT
65582784 ATAAATTTTTA
1 ATAAATTTTTA
65582795 ATAATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 9 0.36
18 9 0.36
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
ATAAATTTTTATTTTT
Found at i:65582791 original size:25 final size:25
Alignment explanation
Indices: 65582754--65582804 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
65582744 ATTTAAATAA
*
65582754 ATTTTTATTATTTTTAAT-ATTTTT
1 ATTTTTATAATTTTTAATAATTTTT
65582778 ATTTTTATAAATTTTTAATAATTTTT
1 ATTTTTAT-AATTTTTAATAATTTTT
65582804 A
1 A
65582805 ATTGAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 8 0.33
25 9 0.38
26 7 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
ATTTTTATAATTTTTAATAATTTTT
Found at i:65582816 original size:26 final size:25
Alignment explanation
Indices: 65582763--65582819 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
65582753 AATTTTTATT
* **
65582763 ATTTTTAATATTTTTATTTTTATAA
1 ATTTTTAATATTTTTAATTGAATAA
*
65582788 ATTTTTAATAATTTTTAATTGAATTA
1 ATTTTTAAT-ATTTTTAATTGAATAA
65582814 ATTTTT
1 ATTTTT
65582820 TTTTGGAAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (25 bp):
ATTTTTAATATTTTTAATTGAATAA
Found at i:65583288 original size:30 final size:30
Alignment explanation
Indices: 65583247--65583309 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
65583237 AATTAACAAG
65583247 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
65583277 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
65583307 CAA
1 CAA
65583310 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:65583624 original size:5 final size:5
Alignment explanation
Indices: 65583614--65583671 Score: 89
Period size: 5 Copynumber: 11.6 Consensus size: 5
65583604 AATAGGTCTA
* * *
65583614 ATTAT ATTAT ACTAT ATTAT ATTAT ATTAG ACTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
65583664 ATTAT ATT
1 ATTAT ATT
65583672 TGAAGATCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (5 bp):
ATTAT
Found at i:65583639 original size:20 final size:20
Alignment explanation
Indices: 65583614--65583671 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
65583604 AATAGGTCTA
65583614 ATTATATTATACTATATTAT
1 ATTATATTATACTATATTAT
*
65583634 ATTATATTAGACTATATTAT
1 ATTATATTATACTATATTAT
*
65583654 ATTATATTATATTATATT
1 ATTATATTATACTATATT
65583672 TGAAGATCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTATATTATACTATATTAT
Found at i:65583701 original size:28 final size:28
Alignment explanation
Indices: 65583657--65583731 Score: 143
Period size: 28 Copynumber: 2.7 Consensus size: 28
65583647 ATATTATATT
65583657 ATATTATA-TTATATTTGAAGATCAATA
1 ATATTATACTTATATTTGAAGATCAATA
65583684 ATATTATACTTATATTTGAAGATCAATA
1 ATATTATACTTATATTTGAAGATCAATA
65583712 ATATTATACTTATATTTGAA
1 ATATTATACTTATATTTGAA
65583732 TACATGTACT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 8 0.17
28 39 0.83
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (28 bp):
ATATTATACTTATATTTGAAGATCAATA
Found at i:65592628 original size:18 final size:18
Alignment explanation
Indices: 65592587--65592628 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
65592577 CCATGTGGCC
65592587 TGCCCGTGTGGGCCCACA
1 TGCCCGTGTGGGCCCACA
**
65592605 CACCCGTGT-GGCCCACA
1 TGCCCGTGTGGGCCCACA
65592622 TTGCCCG
1 -TGCCCG
65592629 ATTTGGCTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.12, C:0.43, G:0.29, T:0.17
Consensus pattern (18 bp):
TGCCCGTGTGGGCCCACA
Found at i:65594450 original size:49 final size:49
Alignment explanation
Indices: 65594390--65594572 Score: 183
Period size: 49 Copynumber: 3.7 Consensus size: 49
65594380 TATTCGGATA
*
65594390 TGATGGGCCACTGGTAGGGCATGTTAGTTGTTAACCAAGTTGGCGTATG
1 TGATGGGCCACTGGTAGGGCATGTTAGTTGCTAACCAAGTTGGCGTATG
* * *
65594439 TGTTGGGCCACTAGTAGGGCATGTTAGTTGCTAACCAGGTT-GC-TA-G
1 TGATGGGCCACTGGTAGGGCATGTTAGTTGCTAACCAAGTTGGCGTATG
* * * * * * *
65594485 AGATGACAGGCCATTGGTATGTCATGTTAGTTGCTAAACAAGTTGGAGCATG
1 TGATG---GGCCACTGGTAGGGCATGTTAGTTGCTAACCAAGTTGGCGTATG
* ** *
65594537 TGCTGGGTTATTGGTAGGGCATGTTAGTTGCTAACC
1 TGATGGGCCACTGGTAGGGCATGTTAGTTGCTAACC
65594573 GGCCCGACAT
Statistics
Matches: 107, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
46 4 0.04
47 2 0.02
48 2 0.02
49 93 0.87
50 1 0.01
51 1 0.01
52 4 0.04
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (49 bp):
TGATGGGCCACTGGTAGGGCATGTTAGTTGCTAACCAAGTTGGCGTATG
Found at i:65594564 original size:98 final size:98
Alignment explanation
Indices: 65594395--65594572 Score: 248
Period size: 98 Copynumber: 1.8 Consensus size: 98
65594385 GGATATGATG
* * * * *
65594395 GGCCACTGGTAGGGCATGTTAGTTGTTAACCAAGTTGGCGTATGTGTTGGGCCACTAGTAGGGCA
1 GGCCACTGGTAGGGCATGTTAGTTGCTAAACAAGTTGGAGCATGTGCTGGGCCACTAGTAGGGCA
65594460 TGTTAGTTGCTAACCAGGTTGCTAGAGATGACA
66 TGTTAGTTGCTAACCAGGTTGCTAGAGATGACA
* * * ** * *
65594493 GGCCATTGGTATGTCATGTTAGTTGCTAAACAAGTTGGAGCATGTGCTGGGTTATTGGTAGGGCA
1 GGCCACTGGTAGGGCATGTTAGTTGCTAAACAAGTTGGAGCATGTGCTGGGCCACTAGTAGGGCA
65594558 TGTTAGTTGCTAACC
66 TGTTAGTTGCTAACC
65594573 GGCCCGACAT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
98 68 1.00
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (98 bp):
GGCCACTGGTAGGGCATGTTAGTTGCTAAACAAGTTGGAGCATGTGCTGGGCCACTAGTAGGGCA
TGTTAGTTGCTAACCAGGTTGCTAGAGATGACA
Found at i:65596890 original size:25 final size:25
Alignment explanation
Indices: 65596861--65596938 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
65596851 ATTCTACCTT
65596861 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
65596886 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
65596908 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
65596933 ATCACA
1 ATCACA
65596939 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:65596890 original size:47 final size:47
Alignment explanation
Indices: 65596839--65596982 Score: 225
Period size: 47 Copynumber: 3.1 Consensus size: 47
65596829 TTCCACGTTT
* **
65596839 ATCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
65596886 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * **
65596933 ATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
65596980 ATC
1 ATC
65596983 TCATAAAATC
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:65596913 original size:22 final size:22
Alignment explanation
Indices: 65596886--65596961 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
65596876 GTTCACATTC
65596886 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
65596908 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
65596932 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
65596955 ATCACAT
1 ATCACAT
65596962 ATATACACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:65600903 original size:8 final size:8
Alignment explanation
Indices: 65600890--65600919 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
65600880 TTTAATTTAT
65600890 ATAATATA
1 ATAATATA
65600898 ATAATATA
1 ATAATATA
65600906 A-AATATA
1 ATAATATA
65600913 ATAATAT
1 ATAATAT
65600920 TTTCTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:65600910 original size:15 final size:15
Alignment explanation
Indices: 65600887--65600919 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
65600877 TTATTTAATT
*
65600887 TATATAATATAATAA
1 TATAAAATATAATAA
65600902 TATAAAATATAATAA
1 TATAAAATATAATAA
65600917 TAT
1 TAT
65600920 TTTCTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TATAAAATATAATAA
Found at i:65601387 original size:40 final size:41
Alignment explanation
Indices: 65601336--65601417 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
65601326 TTTAATAAAT
* * *
65601336 ATTTACTAGTCTGTTTTAC-AAAACGGAGGCCCGAAAATAC
1 ATTTACGAGTCTATTTTACGAAAACAGAGGCCCGAAAATAC
65601376 ATTTACGAGTCTATTTTACGAAAACAGAGGCCCGAAAATAC
1 ATTTACGAGTCTATTTTACGAAAACAGAGGCCCGAAAATAC
65601417 A
1 A
65601418 ATTTCTGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
40 17 0.45
41 21 0.55
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (41 bp):
ATTTACGAGTCTATTTTACGAAAACAGAGGCCCGAAAATAC
Found at i:65605614 original size:20 final size:20
Alignment explanation
Indices: 65605575--65605616 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
65605565 TATTAATAAT
** *
65605575 TTTTTAAAAAATCACTAAAA
1 TTTTTAAAAAAAAACCAAAA
65605595 TTTTTAAAAAAAAACCAAAA
1 TTTTTAAAAAAAAACCAAAA
65605615 TT
1 TT
65605617 ATAAATTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (20 bp):
TTTTTAAAAAAAAACCAAAA
Found at i:65607065 original size:23 final size:24
Alignment explanation
Indices: 65607039--65607087 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 24
65607029 AAATATAATT
* *
65607039 AATTTTAATTTTTTATA-ATAAAA
1 AATTTAAATATTTTATATATAAAA
*
65607062 AA-TTAAATATTTTATATTTAAAA
1 AATTTAAATATTTTATATATAAAA
65607085 AAT
1 AAT
65607088 GAAAATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
AATTTAAATATTTTATATATAAAA
Found at i:65607093 original size:24 final size:22
Alignment explanation
Indices: 65607049--65607099 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
65607039 AATTTTAATT
*
65607049 TTTTATAATAAAAAATTAAATA
1 TTTTATAATAAAAAATAAAATA
*
65607071 TTTTATATTTAAAAAATGAAAATA
1 TTTTATA-ATAAAAAAT-AAAATA
*
65607095 ATTTA
1 TTTTA
65607100 AAATTTCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.29
23 8 0.33
24 9 0.38
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
TTTTATAATAAAAAATAAAATA
Found at i:65611295 original size:34 final size:34
Alignment explanation
Indices: 65611252--65611350 Score: 110
Period size: 34 Copynumber: 2.9 Consensus size: 34
65611242 AAGCAAGTTT
*
65611252 ATTGCTACTGTATTGATTTATTATAACCATGTTA
1 ATTGCTACTGTATTGATTTATTATAAACATGTTA
* *
65611286 ATTGCTACTGTATTGACTTGA-TATAAACATGTTT
1 ATTGCTACTGTATTGA-TTTATTATAAACATGTTA
* * * * *
65611320 ATTGCTACCGTAATGATCTGTTATAAGCATG
1 ATTGCTACTGTATTGATTTATTATAAACATG
65611351 AATATTTCTA
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
33 1 0.02
34 50 0.93
35 3 0.06
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (34 bp):
ATTGCTACTGTATTGATTTATTATAAACATGTTA
Found at i:65611344 original size:68 final size:68
Alignment explanation
Indices: 65611248--65611393 Score: 161
Period size: 68 Copynumber: 2.2 Consensus size: 68
65611238 TGTTAAGCAA
* * * * *
65611248 GTTTATTGCTACTGTATTGATTTATTATAACCATG-TTAATTGCTACTGTATTGACTTGATATAA
1 GTTTATTGCTACCGTAATGATCTATTATAACCATGAAT-ATTGCTACTCTATTGACTTGATATAA
65611312 ACAT
65 ACAT
* * * * * *
65611316 GTTTATTGCTACCGTAATGATCTGTTATAAGCATGAATATTTCTATTCTATTGACTTGTTATAAG
1 GTTTATTGCTACCGTAATGATCTATTATAACCATGAATATTGCTACTCTATTGACTTGATATAAA
*
65611381 TAT
66 CAT
65611384 G-TTATTGCTA
1 GTTTATTGCTA
65611394 TTGTATTAGT
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
67 9 0.14
68 55 0.85
69 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (68 bp):
GTTTATTGCTACCGTAATGATCTATTATAACCATGAATATTGCTACTCTATTGACTTGATATAAA
CAT
Found at i:65611409 original size:33 final size:33
Alignment explanation
Indices: 65611336--65611418 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 33
65611326 ACCGTAATGA
*
65611336 TCTGTTATAAGCATGAATATTTCTATTCTATTG
1 TCTGTTATAAGCATGAATATTGCTATTCTATTG
* * * *
65611369 ACTTGTTATAAGTATG-TTATTGCTATTGTATTAG
1 TC-TGTTATAAGCATGAATATTGCTATTCTATT-G
65611403 TCTGTTATAAGCATGA
1 TCTGTTATAAGCATGA
65611419 CATGTTGCAT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
33 26 0.65
34 14 0.35
ACGTcount: A:0.28, C:0.10, G:0.16, T:0.47
Consensus pattern (33 bp):
TCTGTTATAAGCATGAATATTGCTATTCTATTG
Found at i:65611620 original size:21 final size:21
Alignment explanation
Indices: 65611594--65611635 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
65611584 AATTTTTATT
*
65611594 ATTAGTAGTTCATCTACAACG
1 ATTAGTAGTTCATCCACAACG
*
65611615 ATTAGTGGTTCATCCACAACG
1 ATTAGTAGTTCATCCACAACG
65611636 TGGTGTAAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (21 bp):
ATTAGTAGTTCATCCACAACG
Found at i:65626044 original size:34 final size:35
Alignment explanation
Indices: 65626006--65626133 Score: 127
Period size: 35 Copynumber: 3.7 Consensus size: 35
65625996 TCCATGACAA
* *
65626006 AGTTGTGAAACTTCGGTATGGTATCATCCA-ACTG
1 AGTTGTGAAACGTAGGTATGGTATCATCCATACTG
* *
65626040 AGTTGTGAAACGTAGGTATGGTATTATCTATACTG
1 AGTTGTGAAACGTAGGTATGGTATCATCCATACTG
** * *
65626075 AGTTAAGAAACGTAGGTATGGCAT-TTCCCATA-TCG
1 AGTTGTGAAACGTAGGTATGGTATCAT-CCATACT-G
* *
65626110 AGTTGTAAAATGTAGGTATGGTAT
1 AGTTGTGAAACGTAGGTATGGTAT
65626134 TTCAATGAGG
Statistics
Matches: 77, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
34 28 0.36
35 49 0.64
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.34
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGGTATCATCCATACTG
Found at i:65627592 original size:401 final size:402
Alignment explanation
Indices: 65626847--65627642 Score: 1405
Period size: 401 Copynumber: 2.0 Consensus size: 402
65626837 AAATTGTAAA
*
65626847 AGAATAATTATGGGTTATAATTTATACTATTAAAATCCTTAATGAGTCTATTTTTAAAAGAAACA
1 AGAATAATTATGGATTATAATTTATACTATTAAAATCCTTAATGAGTCTATTTTTAAAAGAAACA
* *
65626912 AAAAATACCATCATATGAATCTCATATGAGGATATAATTAATTTTTAGTGAAGAGTGGTCAGAAC
66 AAAAATACCATCATATGAATCTCATATGAGGAGATAATTAATTTTTAGTGAAGAGGGGTCAGAAC
65626977 CGTCGGACAGCAAAACAGGGGAGAATTTAAAGAATAAACTGTACTTATTGACTTGACCAAAAATT
131 CGTCGGACAGCAAAACAGGGGAGAATTTAAAGAATAAACTGTACTTATTGACTTGACCAAAAATT
*
65627042 CTGAAAATTTTTGGTAAGAAGATATGTGAGTCTAGTTTCAGGGAAAATTAGAGGATCCTAATTTG
196 CTGAAAATTTTTGGCAAGAAGATATGTGAGTCTAGTTTCAGGGAAAATTAGAGGATCCTAATTTG
*
65627107 GAGTTTCGTAGCCCAAGATATTAATAATTATTGTGACTATGACTCGAGTGGACAGCTTTAATGTG
261 GAGTTTCGTAGCCCAAGATATTAATAATTATTGTGACTATGACTCGAGTGGACAACTTTAATGTG
*
65627172 AATATAAGTAAACAATGGAATTTTTGTGTAATTATTCCGTAAACTTTGGTAACATCTTGTAACCC
326 AATATAAGTAAACAATGGAATTTTTGTGTAATTATTCCGTAAACTTCGGTAACATCTTGTAACCC
65627237 TGTTCCGGTGAC
391 TGTTCCGGTGAC
* *
65627249 AGAATAATTATGGATTATAATTTATACTATTCAAATCCTTAATGAGTCTATTTTTAAAAGAAATA
1 AGAATAATTATGGATTATAATTTATACTATTAAAATCCTTAATGAGTCTATTTTTAAAAGAAACA
*
65627314 AAAAATACCATCATTTGAATCTCATATGAGGAGATAATTAATTTTTAGTGAAGAGGGGTCA-AAC
66 AAAAATACCATCATATGAATCTCATATGAGGAGATAATTAATTTTTAGTGAAGAGGGGTCAGAAC
* * *
65627378 TGTCGGACAGCAAAATAGGGGAGAATTTAAAGAATAAACTGTACTTATTGGCTTGACCAAAAATT
131 CGTCGGACAGCAAAACAGGGGAGAATTTAAAGAATAAACTGTACTTATTGACTTGACCAAAAATT
* * * *
65627443 TTGAAAATTTTTGGCAAGAAGATATGTGAGTTTAGTTTCAGGGAAAATTAGCGGATCTTAATTTG
196 CTGAAAATTTTTGGCAAGAAGATATGTGAGTCTAGTTTCAGGGAAAATTAGAGGATCCTAATTTG
* * *
65627508 GAGTTTCGTAGCTCAAGATATTAATAATTATTGTTACTATGACTCGAGTGGACAACTTTGATGTG
261 GAGTTTCGTAGCCCAAGATATTAATAATTATTGTGACTATGACTCGAGTGGACAACTTTAATGTG
*
65627573 AATATAAGTAAATAATGGAATTTTTGTGTAATTATTCCGTAAACTTCGGTAACATCTTGTAACCC
326 AATATAAGTAAACAATGGAATTTTTGTGTAATTATTCCGTAAACTTCGGTAACATCTTGTAACCC
65627638 TGTTC
391 TGTTC
65627643 TAGTGACGGA
Statistics
Matches: 374, Mismatches: 20, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
401 254 0.68
402 120 0.32
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (402 bp):
AGAATAATTATGGATTATAATTTATACTATTAAAATCCTTAATGAGTCTATTTTTAAAAGAAACA
AAAAATACCATCATATGAATCTCATATGAGGAGATAATTAATTTTTAGTGAAGAGGGGTCAGAAC
CGTCGGACAGCAAAACAGGGGAGAATTTAAAGAATAAACTGTACTTATTGACTTGACCAAAAATT
CTGAAAATTTTTGGCAAGAAGATATGTGAGTCTAGTTTCAGGGAAAATTAGAGGATCCTAATTTG
GAGTTTCGTAGCCCAAGATATTAATAATTATTGTGACTATGACTCGAGTGGACAACTTTAATGTG
AATATAAGTAAACAATGGAATTTTTGTGTAATTATTCCGTAAACTTCGGTAACATCTTGTAACCC
TGTTCCGGTGAC
Found at i:65633559 original size:48 final size:48
Alignment explanation
Indices: 65633494--65633997 Score: 686
Period size: 48 Copynumber: 10.1 Consensus size: 48
65633484 GCTGAAATTG
* *
65633494 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
65633542 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC-----T---A-ATGTGAAAT
65633599 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
65633647 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
65633695 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * * * *
65633745 ATATATGAGATATGTGTATGTGGTAAAGCTGGATGGTTAATGTGAAATATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-AT
* * *
65633799 ATATATGAGATATGTATATGTGGTAAAGCCAAATGGCCAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
65633847 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
65633897 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
65633945 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
65633993 ATGTA
1 ATGTA
65633998 GGCGATGTGT
Statistics
Matches: 413, Mismatches: 24, Indels: 38
0.87 0.05 0.08
Matches are distributed among these distances:
48 231 0.56
49 8 0.02
50 82 0.20
51 1 0.00
52 1 0.00
53 2 0.00
54 42 0.10
56 1 0.00
57 45 0.11
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:65633855 original size:152 final size:146
Alignment explanation
Indices: 65633494--65633997 Score: 758
Period size: 152 Copynumber: 3.4 Consensus size: 146
65633484 GCTGAAATTG
* *
65633494 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
65633559 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTGAAATATGTATGAGATATGTATATGTGGTA
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATA--T---ATA--TATGAGATATGTATATGTGGTA
65633624 AAGCCGAATGGCTAATGTGAAAT
124 AAGCCGAATGGCTAATGTGAAAT
65633647 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
* * * *
65633712 ATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTGTATGTGGTAAAGCTGG
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGA
*
65633777 ATGGTTAATGTGAAATATATAT
131 ATGGCTAATGTG----A-A-AT
* * * *
65633799 ATATATGAGATATGTATATGTGGTAAAGCCAAATGGCCAATGTGAAATATGTATGAGATATGCAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
65633864 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCG
66 ATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCG
*
65633928 AATGGCTAGTGTGAAAT
130 AATGGCTAATGTGAAAT
*
65633945 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
65633998 GGCGATGTGT
Statistics
Matches: 323, Mismatches: 21, Indels: 21
0.88 0.06 0.06
Matches are distributed among these distances:
146 88 0.27
147 1 0.00
148 4 0.01
150 1 0.00
151 3 0.01
152 132 0.41
153 94 0.29
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (146 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAAT
Found at i:65634013 original size:98 final size:99
Alignment explanation
Indices: 65633502--65633997 Score: 696
Period size: 98 Copynumber: 4.9 Consensus size: 99
65633492 TGATGTATAA
*
65633502 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
*
65633567 AAGCCGAATGGCTAATGTGAAATATGTGAAATATGTAT
66 AAGCCGAATGGCTAATGTGAAATATGT---ATAAG-AT
65633605 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 --GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
65633670 TAAAGCCGAATGGCTAATGTGAAATATGTAT--GA-
64 TAAAGCCGAATGGCTAATGTGAAATATGTATAAGAT
* * *
65633703 GATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTGTATGTGG
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGG
* * * * *
65633768 TAAAGCTGGATGGTTAATGTGAAATATATATATATAT
64 TAAAGCCGAATGGCTAATGTGAAATATGTATA-AGAT
* * *
65633805 GAGATATGTATATGTGGTAAAGCCAAATGGCCAATGTGAAATATGTATGAGATATGCATATGTGG
1 --GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
* *
65633870 TAAAGCCGAATGG-TCAATGTGAAATATATATATGA-
64 TAAAGCCGAATGGCT-AATGTGAAATATGTATAAGAT
*
65633905 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
*
65633970 AAGCCGAATGGCTAGTGTGAAATATGTA
66 AAGCCGAATGGCTAATGTGAAATATGTA
65633998 GGCGATGTGT
Statistics
Matches: 356, Mismatches: 25, Indels: 27
0.87 0.06 0.07
Matches are distributed among these distances:
96 35 0.10
97 2 0.01
98 135 0.38
99 2 0.01
100 1 0.00
101 3 0.01
102 52 0.15
103 2 0.01
104 33 0.09
105 91 0.26
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (99 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
AAGCCGAATGGCTAATGTGAAATATGTATAAGAT
Found at i:65634033 original size:200 final size:198
Alignment explanation
Indices: 65633501--65633998 Score: 750
Period size: 200 Copynumber: 2.5 Consensus size: 198
65633491 TTGATGTATA
65633501 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
*
65633566 AAAGCCGAATGGCTAATGTGAAATATGT-GAAATATGTATGAGATATGTATATGTGGTAAAGCCG
66 AAAGCCGAATGGCTAATGTGAAATATGTAG-AATATG--TGAGATA-GTATATGTGGTAAAGCCA
* *
65633630 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
127 AATGGCCAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
65633695 ATGTATG
192 ATATATG
* * * *
65633702 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTGTATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAGATATGTATATGTG
* * * * * *
65633767 GTAAAGCTGGATGGTTAATGTGAAATATATA-TATATATGAGATATGTATATGTGGTAAAGCCAA
64 GTAAAGCCGAATGGCTAATGTGAAATATGTAGAATATGTGAGATA-GTATATGTGGTAAAGCCAA
65633831 ATGGCCAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAAT
128 ATGGCCAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-
65633895 ATATATATG
190 ATATATATG
65633904 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
*
65633969 AAAGCCGAATGGCTAGTGTGAAATATGTAG
66 AAAGCCGAATGGCTAATGTGAAATATGTAG
65633999 GCGATGTGTG
Statistics
Matches: 267, Mismatches: 23, Indels: 14
0.88 0.08 0.05
Matches are distributed among these distances:
199 1 0.00
200 130 0.49
201 39 0.15
202 49 0.18
203 48 0.18
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (198 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTAGAATATGTGAGATAGTATATGTGGTAAAGCCAAATG
GCCAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT
ATG
Found at i:65634194 original size:37 final size:37
Alignment explanation
Indices: 65634144--65634252 Score: 200
Period size: 37 Copynumber: 2.9 Consensus size: 37
65634134 GGAAATATAT
65634144 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65634181 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
65634218 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65634253 CATCTGAGCT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65635318 original size:5 final size:5
Alignment explanation
Indices: 65635308--65635333 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
65635298 AAAATTTAAA
65635308 ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT A
65635334 AGGTTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:65639577 original size:33 final size:33
Alignment explanation
Indices: 65639540--65639606 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
65639530 TTTAACATAG
65639540 ACTTAACTTATTTATATTGAATTATTGAATATT
1 ACTTAACTTATTTATATTGAATTATTGAATATT
65639573 ACTTAACTTATTTATATTGAATTATTGAATATT
1 ACTTAACTTATTTATATTGAATTATTGAATATT
65639606 A
1 A
65639607 TTGAGTAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (33 bp):
ACTTAACTTATTTATATTGAATTATTGAATATT
Found at i:65639627 original size:33 final size:34
Alignment explanation
Indices: 65639540--65639627 Score: 110
Period size: 33 Copynumber: 2.7 Consensus size: 34
65639530 TTTAACATAG
*
65639540 ACTTAACTTATTTATAT-TGAATTATTGAATATT
1 ACTTAACTAATTTATATATGAATTATTGAATATT
*
65639573 ACTTAACTTATTTATAT-TGAATTATTGAATATT
1 ACTTAACTAATTTATATATGAATTATTGAATATT
* * *
65639606 A-TTGAGTAATTTGTATATGAAT
1 ACTTAACTAATTTATATATGAAT
65639628 GTTTCTGTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 11 0.22
33 39 0.78
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (34 bp):
ACTTAACTAATTTATATATGAATTATTGAATATT
Found at i:65642502 original size:45 final size:45
Alignment explanation
Indices: 65642438--65642529 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
65642428 TTTTTAAAAT
65642438 CATCCAAATTAAGCTGAAGTAACATTTTAATGCTTCCCCATTGTA
1 CATCCAAATTAAGCTGAAGTAACATTTTAATGCTTCCCCATTGTA
65642483 CATCCAAATTAAGCTGAAGTAACATTTTAATGCTTCCCCATTGTA
1 CATCCAAATTAAGCTGAAGTAACATTTTAATGCTTCCCCATTGTA
65642528 CA
1 CA
65642530 CATACTCTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.33
Consensus pattern (45 bp):
CATCCAAATTAAGCTGAAGTAACATTTTAATGCTTCCCCATTGTA
Found at i:65652014 original size:43 final size:43
Alignment explanation
Indices: 65651934--65652015 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
65651924 GAGATTTGTT
** * *
65651934 GCATCCGAGCTCATTGAGAGGTCTGAGTTTATTATGGATGCAA
1 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATGCAA
* *
65651977 GCATCTGAGCTCGTTGAGAGGTCCAAGTTCATGATGGAT
1 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGAT
65652016 ACGATTCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATGCAA
Found at i:65654905 original size:24 final size:24
Alignment explanation
Indices: 65654873--65654921 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
65654863 TAGCACTCTG
*
65654873 CATATTGAACCTGCAAAAAACTTT
1 CATATTGAACCCGCAAAAAACTTT
65654897 CATATTGAACCCGCAAAAAACTTT
1 CATATTGAACCCGCAAAAAACTTT
65654921 C
1 C
65654922 TCAATGTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (24 bp):
CATATTGAACCCGCAAAAAACTTT
Found at i:65658744 original size:25 final size:24
Alignment explanation
Indices: 65658715--65658780 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 24
65658705 TTCCAAAAGG
* *
65658715 AAAAATAATTAAATTAAAAATTATT
1 AAAAATAATAAAAATAAAAA-TATT
*
65658740 AAAAATTTATAAAAATAAAAATATT
1 AAAAA-TAATAAAAATAAAAATATT
65658765 AAAAGATAATAAAAAT
1 AAAA-ATAATAAAAAT
65658781 TTATTTAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
25 22 0.63
26 13 0.37
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (24 bp):
AAAAATAATAAAAATAAAAATATT
Found at i:65660400 original size:21 final size:21
Alignment explanation
Indices: 65660361--65660427 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 21
65660351 ATATTTTGAA
65660361 ATTA-TTTTTAAAAATTTAAAC
1 ATTATTTTTTAAAAA-TTAAAC
* *
65660382 ATTCTTTTTTAAAAATTAAAT
1 ATTATTTTTTAAAAATTAAAC
*
65660403 A-TATTTTTTAATAATATAAAAC
1 ATTATTTTTTAA-AA-ATTAAAC
65660425 ATT
1 ATT
65660428 TAAATATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
20 9 0.24
21 11 0.30
22 16 0.43
23 1 0.03
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTATTTTTTAAAAATTAAAC
Found at i:65660428 original size:20 final size:20
Alignment explanation
Indices: 65660386--65660428 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
65660376 TTAAACATTC
*
65660386 TTTTTTAAAAATTAAATATA
1 TTTTTTAAAAATTAAATACA
*
65660406 TTTTTTAATAATATAAA-ACA
1 TTTTTTAAAAAT-TAAATACA
65660426 TTT
1 TTT
65660429 AAATATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTTTTAAAAATTAAATACA
Found at i:65660496 original size:14 final size:15
Alignment explanation
Indices: 65660470--65660502 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
65660460 ATTATTAGTT
65660470 TTATAATATTTTAAA
1 TTATAATATTTTAAA
65660485 TTATAATA-TTTAAA
1 TTATAATATTTTAAA
65660499 TTAT
1 TTAT
65660503 TTTTAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:65660580 original size:20 final size:19
Alignment explanation
Indices: 65660543--65660580 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
65660533 TCTATTTAAA
*
65660543 ATTTAAAAAATAATATTTT
1 ATTTAAAAAATAAAATTTT
65660562 ATTTAAAAAAGTAAAATTT
1 ATTTAAAAAA-TAAAATTT
65660581 GAATTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
ATTTAAAAAATAAAATTTT
Found at i:65660587 original size:20 final size:19
Alignment explanation
Indices: 65660545--65660587 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
65660535 TATTTAAAAT
* * *
65660545 TTAAAAAATAATATTTTAT
1 TTAAAAAATAAAATTTGAA
65660564 TTAAAAAAGTAAAATTTGAA
1 TTAAAAAA-TAAAATTTGAA
65660584 TTAA
1 TTAA
65660588 TTAGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
TTAAAAAATAAAATTTGAA
Found at i:65660629 original size:22 final size:22
Alignment explanation
Indices: 65660597--65660650 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
65660587 ATTAGAAAAA
65660597 TAAAAAA-AATATTTTAAATTT
1 TAAAAAATAATATTTTAAATTT
65660618 TAAAAAATAATATTTTAAATTT
1 TAAAAAATAATATTTTAAATTT
65660640 TAAAAAATAAT
1 TAAAAAATAAT
65660651 TTCAAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 7 0.22
22 25 0.78
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAAAAATAATATTTTAAATTT
Found at i:65660659 original size:22 final size:22
Alignment explanation
Indices: 65660597--65660659 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
65660587 ATTAGAAAAA
**
65660597 TAAAAAA-AATATTTTAAATTT
1 TAAAAAATAATATTAAAAATTT
**
65660618 TAAAAAATAATATTTTAAATTT
1 TAAAAAATAATATTAAAAATTT
65660640 TAAAAAATAAT-TTCAAAAAT
1 TAAAAAATAATATT-AAAAAT
65660660 ATATATTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
21 9 0.24
22 29 0.76
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAAAATAATATTAAAAATTT
Found at i:65673272 original size:19 final size:20
Alignment explanation
Indices: 65673241--65673284 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
65673231 TTAGTGCACC
65673241 TTTTTTAACTGG-TAGATAA
1 TTTTTTAACTGGTTAGATAA
65673260 TATTTTTAA-TGGTTAGATAA
1 T-TTTTTAACTGGTTAGATAA
65673280 TTTTT
1 TTTTT
65673285 CTTTACAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.55
Consensus pattern (20 bp):
TTTTTTAACTGGTTAGATAA
Found at i:65673942 original size:16 final size:16
Alignment explanation
Indices: 65673921--65673956 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
65673911 TTTGGTTCGC
*
65673921 TGTATTGGATTAGAGG
1 TGTATTGGAATAGAGG
65673937 TGTATTGGAATAGAGG
1 TGTATTGGAATAGAGG
65673953 TGTA
1 TGTA
65673957 ATAGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGAATAGAGG
Found at i:65674209 original size:16 final size:16
Alignment explanation
Indices: 65674172--65674213 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
65674162 TTAATCATAT
*
65674172 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
65674188 TT-AAATATATTATAA
1 TTAAAATATATTATAA
65674203 TTAAAATATAT
1 TTAAAATATAT
65674214 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:65674220 original size:14 final size:15
Alignment explanation
Indices: 65674181--65674222 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
65674171 TTTAAACATA
*
65674181 ATTATTATTAAATAT
1 ATTATAATTAAATAT
65674196 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
65674210 A-TATAATTTAATA
1 ATTATAATTAAATA
65674223 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Done.