Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 203 of 316
Found at i:66053346 original size:40 final size:40
Alignment explanation
Indices: 66053284--66053500 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
66053274 AAGCCAAGTA
* * *
66053284 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
66053323 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* *
66053363 CCTTCGGGACTTAGCCCGGACATAATAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * *
66053403 CCTTCGGGAATTAGCCCGGGTATAATAACTCGCAC-AATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAA-TG
* * *
66053443 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
66053482 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
66053501 TTATCATCCG
Statistics
Matches: 155, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 43 0.28
40 111 0.72
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:66072211 original size:24 final size:25
Alignment explanation
Indices: 66072177--66072254 Score: 95
Period size: 24 Copynumber: 3.0 Consensus size: 25
66072167 TACGACATTG
*
66072177 TGCTAAGTGAAATAAGACCATGGCA
1 TGCTAAGTGAAATAAGTCCATGGCA
*
66072202 T-CTAAGTGAAATAAGTCCATGACAA
1 TGCTAAGTGAAATAAGTCCATGGC-A
*
66072227 TGTGCTAAGTGAAATAAGTCCATTGCA
1 --TGCTAAGTGAAATAAGTCCATGGCA
66072254 T
1 T
66072255 TATGCTAAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
24 20 0.44
25 3 0.07
27 2 0.04
28 20 0.44
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (25 bp):
TGCTAAGTGAAATAAGTCCATGGCA
Found at i:66072243 original size:28 final size:28
Alignment explanation
Indices: 66072170--66072266 Score: 105
Period size: 28 Copynumber: 3.6 Consensus size: 28
66072160 TATAGGATAC
* *
66072170 GACATTGTGCTAAGTGAAATAAGACCAT
1 GACAATGTGCTAAGTGAAATAAGTCCAT
*
66072198 GGC-A--T-CTAAGTGAAATAAGTCCAT
1 GACAATGTGCTAAGTGAAATAAGTCCAT
66072222 GACAATGTGCTAAGTGAAATAAGTCCATT
1 GACAATGTGCTAAGTGAAATAAGTCCA-T
* *
66072251 G-CATTATGCTAAGTGA
1 GACAATGTGCTAAGTGA
66072267 GAAATTTCCT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
24 20 0.34
25 2 0.03
27 1 0.02
28 33 0.57
29 2 0.03
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (28 bp):
GACAATGTGCTAAGTGAAATAAGTCCAT
Found at i:66072345 original size:51 final size:51
Alignment explanation
Indices: 66072290--66072436 Score: 251
Period size: 51 Copynumber: 2.9 Consensus size: 51
66072280 TGAACCTTAG
*
66072290 GAATAAAATAGCTTTGGACACAAGTGCGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
66072341 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
66072392 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCA
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCA
66072437 TCGTGTATCC
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
50 1 0.01
51 90 0.99
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:66076369 original size:80 final size:81
Alignment explanation
Indices: 66076267--66076464 Score: 301
Period size: 80 Copynumber: 2.5 Consensus size: 81
66076257 GGCATAATCA
* *
66076267 TCATTTTACCATAAAGGGGTATTACGATCATTTTACCCTACAAGGGCATTATAG-TCATTTTACC
1 TCATTTTACCATACAGGGGTATTACGATCATTTTACCCTACAAGGACATTA-AGATCATTTTACC
* *
66076331 CTATAGGGGTATTACGG
65 CTACAGGGGTATAACGG
*
66076348 TCATTTTACC-TACAGGGGTATTACGATCATTTTACCCTACAAGGACATTACGATCATTTTACCC
1 TCATTTTACCATACAGGGGTATTACGATCATTTTACCCTACAAGGACATTAAGATCATTTTACCC
*
66076412 TACAGGGGTATAATGG
66 TACAGGGGTATAACGG
* *
66076428 TCATTTTACCTTACAGGGGTATTACGATTATTTTACC
1 TCATTTTACCATACAGGGGTATTACGATCATTTTACC
66076465 TATTTTGGGG
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
79 1 0.01
80 72 0.67
81 35 0.32
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (81 bp):
TCATTTTACCATACAGGGGTATTACGATCATTTTACCCTACAAGGACATTAAGATCATTTTACCC
TACAGGGGTATAACGG
Found at i:66076465 original size:27 final size:27
Alignment explanation
Indices: 66076266--66076464 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
66076256 GGGCATAATC
* *
66076266 ATCATTTTACCATAAAGGGGTATTACG
1 ATCATTTTACCCTACAGGGGTATTACG
* * *
66076293 ATCATTTTACCCTACAAGGGCATTA-T
1 ATCATTTTACCCTACAGGGGTATTACG
*
66076319 AGTCATTTTACCCTATAGGGGTATTACG
1 A-TCATTTTACCCTACAGGGGTATTACG
*
66076347 GTCATTTTA-CCTACAGGGGTATTACG
1 ATCATTTTACCCTACAGGGGTATTACG
* **
66076373 ATCATTTTACCCTACAAGGACATTACG
1 ATCATTTTACCCTACAGGGGTATTACG
* *
66076400 ATCATTTTACCCTACAGGGGTATAATG
1 ATCATTTTACCCTACAGGGGTATTACG
* *
66076427 GTCATTTTACCTTACAGGGGTATTACG
1 ATCATTTTACCCTACAGGGGTATTACG
*
66076454 ATTATTTTACC
1 ATCATTTTACC
66076465 TATTTTGGGG
Statistics
Matches: 143, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
26 25 0.17
27 118 0.83
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
ATCATTTTACCCTACAGGGGTATTACG
Found at i:66081458 original size:27 final size:27
Alignment explanation
Indices: 66081427--66081604 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66081417 TAAATTGTAC
66081427 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66081454 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66081480 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66081508 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66081536 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66081563 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66081590 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66081605 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66081541 original size:82 final size:81
Alignment explanation
Indices: 66081428--66081583 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66081418 AAATTGTACA
* *
66081428 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66081492 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66081509 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66081574 TGCGAGTTGA
65 TGCGAATTGA
66081584 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66081595 original size:82 final size:81
Alignment explanation
Indices: 66081424--66081604 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
66081414 GATTAAATTG
* *
66081424 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
66081489 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
66081505 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66081569 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
66081587 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66081605 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:66081615 original size:27 final size:27
Alignment explanation
Indices: 66081509--66081615 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
66081499 TGACCATGCG
* * * *
66081509 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
66081537 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
66081564 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
66081591 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
66081616 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:66083291 original size:33 final size:32
Alignment explanation
Indices: 66083254--66083326 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 32
66083244 CCCTATTTAG
*
66083254 TAACAGTACAGTCTAGGCCTAAGCCCTATACAA
1 TAACAGTACAGT-TAGGCCTAAGCCCAATACAA
*
66083287 TAACAGT---G-TGGGCCTAAGCCCAATACAA
1 TAACAGTACAGTTAGGCCTAAGCCCAATACAA
*
66083315 TATCAGTACAGT
1 TAACAGTACAGT
66083327 GTAATGCAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
28 24 0.73
30 1 0.03
31 1 0.03
33 7 0.21
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.22
Consensus pattern (32 bp):
TAACAGTACAGTTAGGCCTAAGCCCAATACAA
Found at i:66083293 original size:28 final size:28
Alignment explanation
Indices: 66083261--66083321 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
66083251 TAGTAACAGT
*
66083261 ACAGTCTAGGCCTAAGCCCTATACAATA
1 ACAGTCTAGGCCTAAGCCCAATACAATA
* *
66083289 ACAGTGTGGGCCTAAGCCCAATACAATA
1 ACAGTCTAGGCCTAAGCCCAATACAATA
*
66083317 TCAGT
1 ACAGT
66083322 ACAGTGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.21
Consensus pattern (28 bp):
ACAGTCTAGGCCTAAGCCCAATACAATA
Found at i:66083502 original size:27 final size:28
Alignment explanation
Indices: 66083472--66083528 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
66083462 AAAAAAGCTG
*
66083472 CCAGAAACAGTAA-ATGTGGCAAAGCCA
1 CCAGAAACAGTAATACGTGGCAAAGCCA
* *
66083499 CCAGTATCAGTAATTACGTGGCAAAGCCA
1 CCAGAAACAGTAA-TACGTGGCAAAGCCA
66083528 C
1 C
66083529 TAATATAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.44
29 14 0.56
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.16
Consensus pattern (28 bp):
CCAGAAACAGTAATACGTGGCAAAGCCA
Found at i:66083704 original size:27 final size:27
Alignment explanation
Indices: 66083663--66083833 Score: 162
Period size: 27 Copynumber: 6.3 Consensus size: 27
66083653 GGCATAATCA
* *
66083663 TCATTTTACCATACAGGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
* ** * **
66083690 TCTTTTTACCCTACAAAGGCATTATAG
1 TCATTTTACCCTACAGGGGTATTACGG
* ** *
66083717 CCATTTTACTTTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
**
66083744 TCATTTTACCCTACAGGGACATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
66083771 TCATTTTACCCTACAAGGGTATAACGG
1 TCATTTTACCCTACAGGGGTATTACGG
** *
66083798 TCATTTTACTTTACAGGGGTATGACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
66083825 TTATTTTAC
1 TCATTTTAC
66083834 ATATTTTAGG
Statistics
Matches: 111, Mismatches: 33, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:66083803 original size:81 final size:81
Alignment explanation
Indices: 66083663--66083833 Score: 216
Period size: 81 Copynumber: 2.1 Consensus size: 81
66083653 GGCATAATCA
** * * *
66083663 TCATTTTACCATACAGGGGTATTACGATCTTTTTACCCTACAAAGGCATTATAGCCATTTTACTT
1 TCATTTTACCATACAGGGACATTACGATCATTTTACCCTACAAAGGCATAACAGCCATTTTACTT
* *
66083728 TATAGGGGTATTACGG
66 TACAGGGGTATGACGG
* * * * * *
66083744 TCATTTTACCCTACAGGGACATTACGGTCATTTTACCCTACAAGGGTATAACGGTCATTTTACTT
1 TCATTTTACCATACAGGGACATTACGATCATTTTACCCTACAAAGGCATAACAGCCATTTTACTT
66083809 TACAGGGGTATGACGG
66 TACAGGGGTATGACGG
*
66083825 TTATTTTAC
1 TCATTTTAC
66083834 ATATTTTAGG
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (81 bp):
TCATTTTACCATACAGGGACATTACGATCATTTTACCCTACAAAGGCATAACAGCCATTTTACTT
TACAGGGGTATGACGG
Found at i:66092508 original size:15 final size:15
Alignment explanation
Indices: 66092488--66092517 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66092478 AATTCTTTCC
66092488 TTGATTCTGATTGTA
1 TTGATTCTGATTGTA
*
66092503 TTGATTCTTATTGTA
1 TTGATTCTGATTGTA
66092518 ATAACACTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.57
Consensus pattern (15 bp):
TTGATTCTGATTGTA
Found at i:66095772 original size:28 final size:28
Alignment explanation
Indices: 66095732--66095785 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
66095722 ATAGGGGTTT
*
66095732 TCACACAGCCTAGACACGCCTGTGTCCC
1 TCACACAGCCTAGACACGCCAGTGTCCC
*
66095760 TCACATAGCCTAGACACGCCAGTGTC
1 TCACACAGCCTAGACACGCCAGTGTC
66095786 ATTGCCCGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.39, G:0.19, T:0.19
Consensus pattern (28 bp):
TCACACAGCCTAGACACGCCAGTGTCCC
Found at i:66096029 original size:30 final size:30
Alignment explanation
Indices: 66095988--66096056 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
66095978 ATGGGGTAGA
66095988 CCGTGTGTCACACACGGTCTAGACACATGC
1 CCGTGTGTCACACACGGTCTAGACACATGC
*
66096018 CCGTATGTCACACACGGTCTAGACACATGC
1 CCGTGTGTCACACACGGTCTAGACACATGC
66096048 CCGTGTGTC
1 CCGTGTGTC
66096057 TACCCGTGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.22
Consensus pattern (30 bp):
CCGTGTGTCACACACGGTCTAGACACATGC
Found at i:66097171 original size:43 final size:43
Alignment explanation
Indices: 66097107--66097189 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
66097097 ACATGTAACA
* * *
66097107 CATCCATAATGAACTTAGACCTCTCAACGAGCTCGGATGCTCG
1 CATCCATAATAAACTCAGACCTCTCAACGAGCTCGAATGCTCG
* *
66097150 CATCCATAATAAACTCGGACCTCTCTACGAGCTCGAATGC
1 CATCCATAATAAACTCAGACCTCTCAACGAGCTCGAATGC
66097190 CACATATCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (43 bp):
CATCCATAATAAACTCAGACCTCTCAACGAGCTCGAATGCTCG
Found at i:66098745 original size:40 final size:40
Alignment explanation
Indices: 66098662--66098917 Score: 353
Period size: 40 Copynumber: 6.5 Consensus size: 40
66098652 CAACCAAGTA
** *
66098662 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
66098700 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66098740 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
66098780 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
66098820 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
66098860 CCTTCGGGACTT-GCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
66098899 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
66098918 TTATCATCCA
Statistics
Matches: 197, Mismatches: 14, Indels: 12
0.88 0.06 0.05
Matches are distributed among these distances:
38 14 0.07
39 46 0.23
40 135 0.69
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:66103206 original size:28 final size:27
Alignment explanation
Indices: 66103135--66103250 Score: 145
Period size: 24 Copynumber: 4.4 Consensus size: 27
66103125 CATACGACAT
*
66103135 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
66103162 --T-CTGAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
*
66103187 TGTGCTAAGTGAAAGAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
66103214 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
66103238 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
66103251 GAAATTTCCC
Statistics
Matches: 76, Mismatches: 5, Indels: 15
0.79 0.05 0.16
Matches are distributed among these distances:
24 42 0.55
25 3 0.04
27 3 0.04
28 28 0.37
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:66103213 original size:52 final size:52
Alignment explanation
Indices: 66103135--66103250 Score: 196
Period size: 52 Copynumber: 2.2 Consensus size: 52
66103125 CATACGACAT
* *
66103135 TGTGCTAAGTGAAATAAGACCATGGCATCTGAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAAGAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
66103187 TGTGCTAAGTGAAAGAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAAGAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
66103239 TGTGCTAAGTGA
1 TGTGCTAAGTGA
66103251 GAAATTTCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (52 bp):
TGTGCTAAGTGAAAGAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:66103329 original size:51 final size:51
Alignment explanation
Indices: 66103274--66103421 Score: 237
Period size: 51 Copynumber: 2.9 Consensus size: 51
66103264 TGAACCTTAG
*
66103274 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGACCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
66103325 GAATAAAATAGCTTTGGACACAAGTGTAGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
66103376 GAATAAAATACCTTTGG-CTACAAG-GCTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTG-TGGTACTATGTGAAGGCCAC
66103422 CGTGTATCCG
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
50 2 0.02
51 89 0.98
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:66105118 original size:26 final size:26
Alignment explanation
Indices: 66105082--66105134 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
66105072 AGAATATGGA
66105082 ATGTATAGGGGCTTGGTCATTTTGTT
1 ATGTATAGGGGCTTGGTCATTTTGTT
66105108 ATGTATAGGGGCTTGGTCATTTTGTT
1 ATGTATAGGGGCTTGGTCATTTTGTT
66105134 A
1 A
66105135 GATGTGTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.17, C:0.08, G:0.30, T:0.45
Consensus pattern (26 bp):
ATGTATAGGGGCTTGGTCATTTTGTT
Found at i:66105966 original size:12 final size:13
Alignment explanation
Indices: 66105944--66105972 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
66105934 TAATTAAATG
66105944 AATTAAAAAGCCA
1 AATTAAAAAGCCA
66105957 AATT-AAAAGCCA
1 AATTAAAAAGCCA
66105969 AATT
1 AATT
66105973 TTGTCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:66106911 original size:43 final size:41
Alignment explanation
Indices: 66106778--66106932 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 41
66106768 CTAAGACTAT
*
66106778 GTGTAAGACAATATCTGGGATATGGCATCTATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCTATATGAGA-TTC
* *
66106820 GTGTAAGACCATATATGGGATATGGC-TTTGATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCT-ATATGAGA-TTC
* *
66106862 GTGTAAGACCATAGCTGGGCTATTGGCATCTATATGAGATTAC
1 GTGTAAGACCATATCTGGGATA-TGGCATCTATATGAGATT-C
* *
66106905 ATGTAAGACCATATCTGAGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
66106933 TGGTACGGTA
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.02
42 62 0.64
43 31 0.32
44 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (41 bp):
GTGTAAGACCATATCTGGGATATGGCATCTATATGAGATTC
Found at i:66106951 original size:85 final size:84
Alignment explanation
Indices: 66106778--66106939 Score: 200
Period size: 85 Copynumber: 1.9 Consensus size: 84
66106768 CTAAGACTAT
* * *
66106778 GTGTAAGACAATATCTGGGATATGGCATCTATATGAGACTTCGTGTAAGACCATATATGGGATAT
1 GTGTAAGACAATAGCTGGGATATGGCATCTATATGAGACTTCATGTAAGACCATATATGAGATAT
* * **
66106843 GGCTTTGATATGAGATTTC
66 GGCATTGATACGAGATACC
* * *
66106862 GTGTAAGACCATAGCTGGGCTATTGGCATCTATATGAGA-TTACATGTAAGACCATATCTGAGAT
1 GTGTAAGACAATAGCTGGGATA-TGGCATCTATATGAGACTT-CATGTAAGACCATATATGAGAT
*
66106926 ATGGCATTGGTACG
64 ATGGCATTGATACG
66106940 GTACCGAGTG
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
84 21 0.31
85 46 0.69
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (84 bp):
GTGTAAGACAATAGCTGGGATATGGCATCTATATGAGACTTCATGTAAGACCATATATGAGATAT
GGCATTGATACGAGATACC
Found at i:66108583 original size:42 final size:42
Alignment explanation
Indices: 66108467--66108631 Score: 170
Period size: 43 Copynumber: 3.9 Consensus size: 42
66108457 CGGAAAGCTC
* * * * *
66108467 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
* * * * *
66108509 ATATTGATTCCACTATCCCAGACAGGGTCTTACACGAAATCAA
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
*
66108552 ATACGATGGCAATGTCCCAGACATGGTCTTACACGTAAATACCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACG-AAAT--CAA
* *
66108597 AT-CGATGCCAATGTCCAAGACGTGGTCTTACACGA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGA
66108632 TAGCACATAT
Statistics
Matches: 100, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 29 0.29
43 37 0.37
44 29 0.29
45 5 0.05
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:66112103 original size:43 final size:43
Alignment explanation
Indices: 66112042--66112136 Score: 165
Period size: 43 Copynumber: 2.2 Consensus size: 43
66112032 CAGAAAATAG
66112042 ACTTCTTATAACCAGAATTCACATTTGCTAAACTTCACATACA
1 ACTTCTTATAACCAGAATTCACATTTGCTAAACTTCACATACA
*
66112085 ACTTCTTGTAACCAGAATTCACATTTGCTAAACTTCACATACA
1 ACTTCTTATAACCAGAATTCACATTTGCTAAACTTCACATACA
66112128 A-TTGCTTAT
1 ACTT-CTTAT
66112137 CTTGCAAAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 2 0.04
43 47 0.96
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (43 bp):
ACTTCTTATAACCAGAATTCACATTTGCTAAACTTCACATACA
Found at i:66113908 original size:27 final size:27
Alignment explanation
Indices: 66113860--66113912 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
66113850 GCATCTGATA
* *
66113860 CTGATTCTGTATTGGGCTTAGGCCCAC
1 CTGATTCTGTAATGGGCATAGGCCCAC
66113887 CTGATTCTGTTAATGGG-ATAGGCCCA
1 CTGATTCTG-TAATGGGCATAGGCCCA
66113913 ACTGTTACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.32
Consensus pattern (27 bp):
CTGATTCTGTAATGGGCATAGGCCCAC
Found at i:66133637 original size:28 final size:28
Alignment explanation
Indices: 66133595--66133725 Score: 165
Period size: 28 Copynumber: 4.7 Consensus size: 28
66133585 TGGCCCCTTT
*
66133595 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
66133623 -GTGCCCAATCACATTCATATGGCCCATC
1 AG-GCCCAATCACATTCATATGGCCCATC
*
66133651 AGGCCCAATCACTTTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * * **
66133679 AGGCCTAATTACTTTCAAATGGCCTGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
66133707 CGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
66133726 GTCATTCAAT
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.01
28 87 0.98
29 1 0.01
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.26
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:66137512 original size:51 final size:51
Alignment explanation
Indices: 66137453--66137549 Score: 176
Period size: 51 Copynumber: 1.9 Consensus size: 51
66137443 TACGAATTTA
66137453 GTAGACTCTACAGGAAAAGTCTTACTATTCTCTAAATTCATGCATAATTCG
1 GTAGACTCTACAGGAAAAGTCTTACTATTCTCTAAATTCATGCATAATTCG
* *
66137504 GTAGACTCTATAGGCAAAGTCTTACTATTCTCTAAATTCATGCATA
1 GTAGACTCTACAGGAAAAGTCTTACTATTCTCTAAATTCATGCATA
66137550 TATAAGAATG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (51 bp):
GTAGACTCTACAGGAAAAGTCTTACTATTCTCTAAATTCATGCATAATTCG
Found at i:66145476 original size:46 final size:44
Alignment explanation
Indices: 66145409--66145615 Score: 177
Period size: 46 Copynumber: 4.6 Consensus size: 44
66145399 ATCGATGCCG
* * *
66145409 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
66145455 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * * *
66145499 TGTCCCAGACATGTCTGACATTGGCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA-GCCGACGCA
* * * * * ** *
66145545 TGTCCCAGACATGTCTTACACTGGCTCTCATATTGTGGTTGATGCA
1 TGTCCCAGACATGTCTTACACTAG--CACATCTCGTAGCCGACGCA
66145591 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
66145616 CTTTGTCTCA
Statistics
Matches: 137, Mismatches: 16, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
43 3 0.02
44 31 0.23
45 1 0.01
46 100 0.73
47 1 0.01
48 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:66145635 original size:46 final size:48
Alignment explanation
Indices: 66145452--66145665 Score: 146
Period size: 46 Copynumber: 4.6 Consensus size: 48
66145442 CCGTGCTGAC
* *
66145452 GCATGTCCCAGACATGTCTTACACTAGCAC----ATCTCGTAGCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGCACTAATATCTCATAGCCGAT
* * * * *
66145496 GCATGTCCCAGACATGTCTGACA-TTG-GCTAACATCTCGA-GGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACTAATATCTC-ATAGCCGAT
* * * * * **
66145542 GCATGTCCCAGACATGTCTTACACTGGCTCTCATAT-T-GTGGTTGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACTAATATCTCATAGCCGAT
* *
66145588 GCATGTCCCAGACATGTCTTACACTAGC-CT-TTGTCTCA-ATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACTAATATCTCATA-GCCGAT
* *
66145634 GCCATGTCCCATACATGGTCTTACACTGGCAC
1 G-CATGTCCCAGACAT-GTCTTACACTAGCAC
66145666 ACAAATCTCA
Statistics
Matches: 133, Mismatches: 23, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 24 0.18
45 3 0.02
46 69 0.52
47 16 0.12
48 17 0.13
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCATGTCCCAGACATGTCTTACACTAGCACTAATATCTCATAGCCGAT
Found at i:66148255 original size:46 final size:46
Alignment explanation
Indices: 66148188--66148362 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
66148178 TGTAACCCGC
66148188 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
66148234 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * ** *
66148284 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
66148327 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
66148363 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.58
47 25 0.23
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:66148304 original size:93 final size:93
Alignment explanation
Indices: 66148196--66148366 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
66148186 GCCCATAAGT
* ** *
66148196 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66148261 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
66148289 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
66148354 CGAGTTCGGATGC
66 CGAGCTCGGATGC
66148367 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:66149275 original size:42 final size:42
Alignment explanation
Indices: 66149180--66149329 Score: 142
Period size: 44 Copynumber: 3.5 Consensus size: 42
66149170 GGGCTGTTAC
* * * * * *
66149180 ACGTGGACTTACATGTAATCAAATATCGACGCCACTATCCCAG
1 ACGTGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAG
66149223 ACAG-GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAG
1 AC-GTGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAG
* * *
66149265 ACGTGGTCTTACACGTAAATACCAAAT-TGATGCCAACGTCCCTG
1 ACGTGGTCTTACACG-AAAT--CAAATACGATGCCAATGTCCCAG
* *
66149309 ACATGGTCTTACACGATATCA
1 ACGTGGTCTTACACGAAATCA
66149330 CATATCAAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
41 3 0.03
42 27 0.30
43 27 0.30
44 29 0.32
45 5 0.05
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (42 bp):
ACGTGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAG
Found at i:66160552 original size:68 final size:68
Alignment explanation
Indices: 66160480--66160614 Score: 159
Period size: 68 Copynumber: 2.0 Consensus size: 68
66160470 GTCTTACGTA
* * *
66160480 TTGTAGCCCCATGTTTAA-CGTCCCAGCAG-ACTCTA-TTGGTTTCCATAGCCGAACTATGGTCT
1 TTGTAACCCAATGTTTAATC-TCCCAG-AGAACTCTACTT-GTTGCCATAGCCGAACTATGGTCT
66160542 TACACC
63 TACACC
* * * *
66160548 TTGTAACCCAATGTTTAATCTCCTAGTGAACTCTACTTGTTGCCATAGTCGAGCTATGGTCTTAC
1 TTGTAACCCAATGTTTAATCTCCCAGAGAACTCTACTTGTTGCCATAGCCGAACTATGGTCTTAC
66160613 AC
66 AC
66160615 TCTAAACCTC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
67 1 0.02
68 53 0.93
69 3 0.05
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (68 bp):
TTGTAACCCAATGTTTAATCTCCCAGAGAACTCTACTTGTTGCCATAGCCGAACTATGGTCTTAC
ACC
Found at i:66161628 original size:42 final size:41
Alignment explanation
Indices: 66161580--66161672 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 41
66161570 CACACGACCA
*
66161580 TGTGCCAGGCCGTGTACCCTTCGAAATAACCCCACATGCCCG
1 TGTGCCAGGCCATGTACCCTTCGAAATAACCCC-CATGCCCG
*
66161622 TGTGCCAGGTCATGTACCCTTCGAAATAACCCCCATGCCCG
1 TGTGCCAGGCCATGTACCCTTCGAAATAACCCCCATGCCCG
*
66161663 TGTGCTAGGC
1 TGTGCCAGGC
66161673 TATGCTCTAG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 16 0.34
42 31 0.66
ACGTcount: A:0.20, C:0.35, G:0.23, T:0.22
Consensus pattern (41 bp):
TGTGCCAGGCCATGTACCCTTCGAAATAACCCCCATGCCCG
Found at i:66165534 original size:25 final size:25
Alignment explanation
Indices: 66165506--66165570 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
66165496 CAAATGATAC
*
66165506 ACCATAAAGGCTTTT-TAGAGAATTA
1 ACCATAAAGG-TTTTCTAAAGAATTA
* *
66165531 ACCAGAAAGGTTTTCTAAAGAATTG
1 ACCATAAAGGTTTTCTAAAGAATTA
*
66165556 ACCATAGAGGTTTTC
1 ACCATAAAGGTTTTC
66165571 CAAATATTTC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 4 0.12
25 30 0.88
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (25 bp):
ACCATAAAGGTTTTCTAAAGAATTA
Found at i:66165623 original size:25 final size:25
Alignment explanation
Indices: 66165524--66165630 Score: 97
Period size: 25 Copynumber: 4.3 Consensus size: 25
66165514 GGCTTTTTAG
* * *
66165524 AGAATTAACCAGAAAGGTTTTCTAA
1 AGAATTCACCACAAAGGTTTTCCAA
* * *
66165549 AGAATTGACCATAGAGGTTTTCCAA
1 AGAATTCACCACAAAGGTTTTCCAA
* * * * * *
66165574 ATATTTCGCCACAAAAGCTTCCCAA
1 AGAATTCACCACAAAGGTTTTCCAA
66165599 AGAATTCACCACAAAGGTTTTCCAA
1 AGAATTCACCACAAAGGTTTTCCAA
*
66165624 AAAATTC
1 AGAATTC
66165631 TCGAGTTTAT
Statistics
Matches: 62, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (25 bp):
AGAATTCACCACAAAGGTTTTCCAA
Found at i:66169474 original size:48 final size:48
Alignment explanation
Indices: 66169422--66169515 Score: 143
Period size: 48 Copynumber: 2.0 Consensus size: 48
66169412 ATTCCAATTC
* * *
66169422 CATATCCCGGATATGGTCTTACATGGGATCACATATCGATGCCAATGT
1 CATATCCCAGACATGGTCTTACATGGGATCACAGATCGATGCCAATGT
**
66169470 CATATCCCAGACATGGTCTTACATGGGATCGTAGATCGATGCCAAT
1 CATATCCCAGACATGGTCTTACATGGGATCACAGATCGATGCCAAT
66169516 AGCCCAGCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (48 bp):
CATATCCCAGACATGGTCTTACATGGGATCACAGATCGATGCCAATGT
Found at i:66171909 original size:27 final size:27
Alignment explanation
Indices: 66171878--66172055 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66171868 TAAATTGTAC
66171878 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66171905 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66171931 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66171959 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66171987 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66172014 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66172041 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66172056 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66171992 original size:82 final size:81
Alignment explanation
Indices: 66171879--66172034 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66171869 AAATTGTACA
* *
66171879 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66171943 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66171960 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66172025 TGCGAGTTGA
65 TGCGAATTGA
66172035 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66172046 original size:82 final size:81
Alignment explanation
Indices: 66171875--66172055 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
66171865 GATTAAATTG
* *
66171875 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
66171940 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
66171956 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66172020 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
66172038 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66172056 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:66181226 original size:42 final size:42
Alignment explanation
Indices: 66181179--66181333 Score: 159
Period size: 42 Copynumber: 3.7 Consensus size: 42
66181169 GTACTACACC
* * **
66181179 AATGCCATATCCTAGATATGGTCTTACATGGGATCTCATATA
1 AATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATATA
* * * *
66181221 AATGCCAATAGCCCAGCTATGGTCTTACAAAAAATCTCATATC
1 AATGCC-ATATCCCAGATATGGTCTTACAAGAAATCTCATATA
* ** *
66181264 GATGCCATATCCCAGATATGGTCTTACGCGATATCTCATA-A
1 AATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATATA
* *
66181305 TGATGCCATATCCCAAATATGGTCTTACA
1 -AATGCCATATCCCAGATATGGTCTTACA
66181334 CATAGTCTCG
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 60 0.65
43 33 0.35
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
AATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATATA
Found at i:66184027 original size:19 final size:18
Alignment explanation
Indices: 66184005--66184041 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
66183995 TGAATTGGCC
66184005 AAATGGGCCGGAATGGGCT
1 AAATGGGCCGG-ATGGGCT
*
66184024 AAATGGGCCTGATGGGCT
1 AAATGGGCCGGATGGGCT
66184042 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.24, C:0.16, G:0.41, T:0.19
Consensus pattern (18 bp):
AAATGGGCCGGATGGGCT
Found at i:66184173 original size:29 final size:28
Alignment explanation
Indices: 66184116--66184198 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
66184106 ATGACTGTAA
* *
66184116 AATGGATTCGGGCCTAGT-GGCCATATG
1 AATGGATTTGGGCCTAATGGGCCATATG
66184143 AATGTGATTTGGGCCTAATGGGCCATATG
1 AATG-GATTTGGGCCTAATGGGCCATATG
*
66184172 AAAGAGA-TTGGGCCTAATGGGCCATAT
1 AATG-GATTTGGGCCTAATGGGCCATAT
66184199 ATAGGTATGT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 4 0.08
28 32 0.64
29 14 0.28
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (28 bp):
AATGGATTTGGGCCTAATGGGCCATATG
Found at i:66187466 original size:16 final size:16
Alignment explanation
Indices: 66187445--66187497 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
66187435 GTAGCCAAAC
66187445 TTTCGACTTTTCGGCA
1 TTTCGACTTTTCGGCA
* * *
66187461 TTTCGACTTTACAGCT
1 TTTCGACTTTTCGGCA
*
66187477 TTTC-AGCTTTTTGGCA
1 TTTCGA-CTTTTCGGCA
66187493 TTTCG
1 TTTCG
66187498 TTTTTTACCG
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
15 1 0.04
16 27 0.96
ACGTcount: A:0.13, C:0.23, G:0.17, T:0.47
Consensus pattern (16 bp):
TTTCGACTTTTCGGCA
Found at i:66189846 original size:27 final size:27
Alignment explanation
Indices: 66189788--66189964 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
66189778 TAAATTGTAC
* *
66189788 AGCACTATGTGTGCG-ATTTACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
66189814 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
66189840 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
66189868 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
66189896 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
66189923 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
66189950 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66189965 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 13 0.10
27 91 0.72
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:66189901 original size:82 final size:80
Alignment explanation
Indices: 66189789--66189943 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 80
66189779 AAATTGTACA
* * *
66189789 GCACTATGTGTGCGATTTACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
66189853 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
66189869 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66189934 TGCGAGTTGA
64 TGCGAATTGA
66189944 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 14 0.22
81 3 0.05
82 47 0.72
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTTACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:66189955 original size:82 final size:80
Alignment explanation
Indices: 66189785--66189964 Score: 209
Period size: 82 Copynumber: 2.2 Consensus size: 80
66189775 GATTAAATTG
* * *
66189785 TACAGCACTATGTGTGCGATTTACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
66189850 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
66189865 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66189929 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
66189947 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66189965 GACTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 16 0.20
81 4 0.05
82 62 0.76
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:66192884 original size:40 final size:40
Alignment explanation
Indices: 66192836--66193063 Score: 411
Period size: 40 Copynumber: 5.7 Consensus size: 40
66192826 GCAAACACAT
* * *
66192836 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
66192876 TTGCCTTCGGGTCTTAGCCCGGGTATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
66192916 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
66192956 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
66192996 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
66193036 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
66193064 TCCAATGCTC
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:66201847 original size:27 final size:27
Alignment explanation
Indices: 66201789--66201965 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
66201779 TAAATTGTAC
* *
66201789 AGCACTATGTGTGCG-ATTTACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
66201815 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
66201841 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
66201869 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
66201897 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
66201924 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
66201951 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66201966 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 13 0.10
27 91 0.72
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:66201902 original size:82 final size:80
Alignment explanation
Indices: 66201790--66201944 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 80
66201780 AAATTGTACA
* * *
66201790 GCACTATGTGTGCGATTTACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
66201854 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
66201870 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66201935 TGCGAGTTGA
64 TGCGAATTGA
66201945 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 14 0.22
81 3 0.05
82 47 0.72
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTTACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:66201956 original size:82 final size:80
Alignment explanation
Indices: 66201786--66201965 Score: 209
Period size: 82 Copynumber: 2.2 Consensus size: 80
66201776 GATTAAATTG
* * *
66201786 TACAGCACTATGTGTGCGATTTACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
66201851 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
66201866 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66201930 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
66201948 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66201966 GACTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 16 0.20
81 4 0.05
82 62 0.76
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:66211767 original size:42 final size:42
Alignment explanation
Indices: 66211656--66211810 Score: 159
Period size: 42 Copynumber: 3.7 Consensus size: 42
66211646 TACTACACCA
* * ** *
66211656 ATGCCATATCCCAAATATGGTCTTACATGGGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * * * *
66211698 ATGCTAATAGCCCAGTTATGGTTTTACACGAAATATCATATCT
1 ATGC-CATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
66211741 ATGCCATATCCCAGATATGTTCTTACATGAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-ATCG
*
66211783 ATGCCATATCCCAGATGTGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
66211811 ATAGTCTCGG
Statistics
Matches: 89, Mismatches: 22, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
42 56 0.63
43 33 0.37
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:66212378 original size:73 final size:73
Alignment explanation
Indices: 66212260--66212627 Score: 341
Period size: 73 Copynumber: 5.0 Consensus size: 73
66212250 TCCGACAGAT
* * * * * *
66212260 TATCTATAATGTCGTAG-AGTCTTTCCAGCTATGGTTTTACACAATATAACCCCATGTTTGCTAA
1 TATCTATGATGTCGTAGCA-TCTTT-TAGCTATGGTCTTACACAATATAACCTCATGTTTACTAT
*
66212324 CCCAGTGGAC
64 CCCAGTAGAC
* * * *
66212334 TACCTATGATGTCGTAGCATCTTTTAGCTATGGTCTTACACAATATAGCCTCGTGTTTACTGT--
1 TATCTATGATGTCGTAGCATCTTTTAGCTATGGTCTTACACAATATAACCTCATGTTTACTATCC
* *
66212397 CATGACAAAC
66 CA-G-TAGAC
** *** * * *
66212407 TATCTATGATGTTATATTGTCTTTCAACTATGGTCTTACACAATATAACCTCGTGTTTACTATCC
1 TATCTATGATGTCGTAGCATCTTTTAGCTATGGTCTTACACAATATAACCTCATGTTTACTATCC
66212472 C-GATAGAC
66 CAG-TAGAC
* * * * * * * * *
66212480 TATTTATGATGCCATAACATCTTTTGGCTATGATCTTACATAATATAATCC-CTTGTTTATTATC
1 TATCTATGATGTCGTAGCATCTTTTAGCTATGGTCTTACACAATATAA-CCTCATGTTTACTATC
*
66212544 CCAGCAGAC
65 CCAGTAGAC
* * *
66212553 TATCTATGATGTCGTAGCATATTTTAGCTATGGTCTTACACAATACAACCTCATGTTTACTGTCC
1 TATCTATGATGTCGTAGCATCTTTTAGCTATGGTCTTACACAATATAACCTCATGTTTACTATCC
66212618 CAGTAGAC
66 CAGTAGAC
66212626 TA
1 TA
66212628 CTAAAGGATG
Statistics
Matches: 234, Mismatches: 52, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
71 2 0.01
72 3 0.01
73 204 0.87
74 23 0.10
75 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.37
Consensus pattern (73 bp):
TATCTATGATGTCGTAGCATCTTTTAGCTATGGTCTTACACAATATAACCTCATGTTTACTATCC
CAGTAGAC
Found at i:66215033 original size:32 final size:32
Alignment explanation
Indices: 66214995--66215058 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
66214985 AAGAATTAAA
66214995 CACACATAATTGAGAACAAAAAACTAAATATT
1 CACACATAATTGAGAACAAAAAACTAAATATT
66215027 CACACATAATTGAGAACAAAAAACTAAATATT
1 CACACATAATTGAGAACAAAAAACTAAATATT
66215059 TATTGTGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.22
Consensus pattern (32 bp):
CACACATAATTGAGAACAAAAAACTAAATATT
Found at i:66217185 original size:12 final size:12
Alignment explanation
Indices: 66217168--66217206 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
66217158 AAACAAAAAC
66217168 AAATAACAA-TAA
1 AAATAA-AAGTAA
66217180 AAATAAAAGTAA
1 AAATAAAAGTAA
*
66217192 AAGTAAAAGTAA
1 AAATAAAAGTAA
66217204 AAA
1 AAA
66217207 AATTAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 2 0.08
12 22 0.92
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (12 bp):
AAATAAAAGTAA
Found at i:66226365 original size:25 final size:25
Alignment explanation
Indices: 66226318--66226366 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
66226308 AAATAGCCAA
*
66226318 TTTAACAGGAAGCTCATGTAGAGCC
1 TTTAACAGGAAGCTCATGAAGAGCC
*
66226343 TTTAATCAGGATGCTCAT-AAGAGC
1 TTTAA-CAGGAAGCTCATGAAGAGC
66226367 TAAGGTGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (25 bp):
TTTAACAGGAAGCTCATGAAGAGCC
Found at i:66232021 original size:184 final size:183
Alignment explanation
Indices: 66231707--66232052 Score: 566
Period size: 184 Copynumber: 1.9 Consensus size: 183
66231697 CTTCGAAACA
* **
66231707 TTTACACATATCAGCCTTAGTCAGAACCCATTCTCTGGCATATTTGCTCAACTGAACAAATTCTC
1 TTTACACATATCAGCCTCAGTCAGAACCCATTCTCTGGCATATTTGCTCAACCAAACAAATTCTC
* *
66231772 ACTCATATTTAGATACAGTCATGTTTCCCTATTTGAGCTATAAAAATTCTTTATTTTTCTGATCT
66 ACTCATATTCAGATACAGTCATGTTTCCCTATTTGAGCTATAAAAATTCTTTATTTTTATGATCT
* * *
66231837 AGAAATTTTTTACTAATGTACTTTTTTTCTGAAATTTGTCTAAACTTTGAAATG
131 AGAAATTTCTGACTAATGT-CTTTCTTTCTGAAATTTGTCTAAACTTTGAAATG
66231891 TTTACACATATCAGCCTCAGTCAGAACCCATTCTCTGGCATATTTGCTCAACCAAACAAATTCTC
1 TTTACACATATCAGCCTCAGTCAGAACCCATTCTCTGGCATATTTGCTCAACCAAACAAATTCTC
* * * * *
66231956 CCTCGTATTCAGATACAGTCATGTTTCCTTGTTTGAGCTATAAAAATTCTTTCTTTTTATGATCT
66 ACTCATATTCAGATACAGTCATGTTTCCCTATTTGAGCTATAAAAATTCTTTATTTTTATGATCT
66232021 AGAAATTTCTGACTAATGTCTTTCTTTCTGAA
131 AGAAATTTCTGACTAATGTCTTTCTTTCTGAA
66232053 TTTTTTCTGT
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
183 12 0.08
184 137 0.92
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (183 bp):
TTTACACATATCAGCCTCAGTCAGAACCCATTCTCTGGCATATTTGCTCAACCAAACAAATTCTC
ACTCATATTCAGATACAGTCATGTTTCCCTATTTGAGCTATAAAAATTCTTTATTTTTATGATCT
AGAAATTTCTGACTAATGTCTTTCTTTCTGAAATTTGTCTAAACTTTGAAATG
Found at i:66234248 original size:23 final size:23
Alignment explanation
Indices: 66234218--66234267 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
66234208 CCATAATTGG
66234218 GAAGTTTACAAAGAA-CTTATCGA
1 GAAGTTTACAAA-AACCTTATCGA
*
66234241 GAAGTTTACAAAAACCTTATCGG
1 GAAGTTTACAAAAACCTTATCGA
66234264 GAAG
1 GAAG
66234268 CTTCGAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 2 0.08
23 23 0.92
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (23 bp):
GAAGTTTACAAAAACCTTATCGA
Found at i:66247159 original size:17 final size:17
Alignment explanation
Indices: 66247137--66247170 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
66247127 GAAGGTAGAT
66247137 TATATTTATGAATAGTG
1 TATATTTATGAATAGTG
66247154 TATATTTATGAATAGTG
1 TATATTTATGAATAGTG
66247171 AAAGGTCAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (17 bp):
TATATTTATGAATAGTG
Found at i:66249758 original size:32 final size:32
Alignment explanation
Indices: 66249717--66249777 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
66249707 GAAAATGAAT
*
66249717 ATATCAATTTCTTTAAATGATTGAGAAACTAA
1 ATATCAATTTCTTTAAATGATTAAGAAACTAA
*
66249749 ATATTAATTTCTTTAAATGATTAAGAAAC
1 ATATCAATTTCTTTAAATGATTAAGAAAC
66249778 AAAGTATGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (32 bp):
ATATCAATTTCTTTAAATGATTAAGAAACTAA
Found at i:66250357 original size:17 final size:17
Alignment explanation
Indices: 66250316--66250357 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
66250306 GCTTATTATA
*
66250316 TATATT-TATTTAAATG
1 TATATTATATTTAAAAG
*
66250332 TGT-TTATATTTAAAAG
1 TATATTATATTTAAAAG
66250348 TATATTATAT
1 TATATTATAT
66250358 CTGATTTGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 2 0.10
16 13 0.62
17 6 0.29
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (17 bp):
TATATTATATTTAAAAG
Found at i:66255631 original size:50 final size:49
Alignment explanation
Indices: 66255558--66255699 Score: 185
Period size: 50 Copynumber: 2.9 Consensus size: 49
66255548 ATGACTTCCA
*
66255558 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTATCAGATGGTGAGG
1 TCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGT-AGG
* * * *
66255608 TCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCGGATTGTTGG
1 TCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTAGG
* * * * *
66255657 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 TCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGAT
66255700 AGCTTCGGCT
Statistics
Matches: 80, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
49 38 0.47
50 42 0.52
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTAGG
Found at i:66263024 original size:50 final size:50
Alignment explanation
Indices: 66262949--66263137 Score: 236
Period size: 50 Copynumber: 3.8 Consensus size: 50
66262939 TGAGTACACG
* * * *
66262949 TGTGTAGTACTAAGCGCAGGCTACTACGTGTACCATACAGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
* * * * *
66262999 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
* * *
66263049 TGTGTAGTACTAAGTGCAGGCTACTACGTATACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
* * *
66263098 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
66263138 CTTCGGCTAT
Statistics
Matches: 117, Mismatches: 22, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
49 39 0.33
50 78 0.67
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
Found at i:66263131 original size:99 final size:100
Alignment explanation
Indices: 66262945--66263135 Score: 294
Period size: 99 Copynumber: 1.9 Consensus size: 100
66262935 ATTGTGAGTA
* *
66262945 CACGTGTGTAGTACTAAGCGCAGGCTACTACGTGTACCATACAGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGCGCAGGCTACTACGTATACCAGACAGTTAAGTCGCATGTGTAGTACT
*
66263010 AAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
66 AAGTGCAGGCTACTACGCGTATCAGATGGTGAGGT
* * ** *
66263045 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCGGATTGTT-GGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGCGCAGGCTACTACGTATACCAGACAGTTAAGTCGCATGTGTAGTACT
*
66263109 AAGTGCAGGCTACTATGCGTATCAGAT
66 AAGTGCAGGCTACTACGCGTATCAGAT
66263136 AGCTTCGGCT
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
99 42 0.51
100 40 0.49
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (100 bp):
CACGTGTGTAGTACTAAGCGCAGGCTACTACGTATACCAGACAGTTAAGTCGCATGTGTAGTACT
AAGTGCAGGCTACTACGCGTATCAGATGGTGAGGT
Found at i:66264957 original size:31 final size:31
Alignment explanation
Indices: 66264919--66264982 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
66264909 CCTTTTCATA
66264919 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
66264950 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
66264981 TT
1 TT
66264983 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:66265251 original size:23 final size:23
Alignment explanation
Indices: 66265197--66265314 Score: 202
Period size: 23 Copynumber: 5.1 Consensus size: 23
66265187 CCTAGCCTCT
*
66265197 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
66265220 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
66265244 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
66265266 TTTAATAACTGAGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
66265289 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
66265312 TTT
1 TTT
66265315 TACACTTCCT
Statistics
Matches: 90, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
22 22 0.24
23 46 0.51
24 22 0.24
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:66265267 original size:46 final size:47
Alignment explanation
Indices: 66265197--66265316 Score: 208
Period size: 45 Copynumber: 2.6 Consensus size: 47
66265187 CCTAGCCTCT
* *
66265197 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGAGGCATAAGCCC
66265244 TTTAATAACT-GGGCATAAGCCC-TTTAATAACTGAGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGAGGCATAAGCCC
66265289 TTTAATAACTGGGGCATAAGCCCTTTTA
1 TTTAATAACTGGGGCATAAGCCCTTTTA
66265317 CACTTCCTCC
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
45 32 0.46
46 23 0.33
47 14 0.20
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGAGGCATAAGCCC
Found at i:66265390 original size:20 final size:20
Alignment explanation
Indices: 66265365--66265431 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
66265355 TTGTGATTAC
66265365 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
66265385 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66265405 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66265425 ACCATGT
1 ATCATGT
66265432 TTATCTAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:66265396 original size:11 final size:11
Alignment explanation
Indices: 66265365--66265420 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
66265355 TTGTGATTAC
66265365 ATCATGTGCAT
1 ATCATGTGCAT
*
66265376 ATCA--TACAT
1 ATCATGTGCAT
66265385 ATCATGTGCAT
1 ATCATGTGCAT
*
66265396 ATCA--TACAT
1 ATCATGTGCAT
*
66265405 GTCATGTGCAT
1 ATCATGTGCAT
66265416 ATCAT
1 ATCAT
66265421 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:66265500 original size:25 final size:25
Alignment explanation
Indices: 66265468--66265515 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66265458 ATACATAAAC
* * *
66265468 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
66265493 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
66265516 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:66267503 original size:40 final size:40
Alignment explanation
Indices: 66267403--66267574 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
66267393 GCTCCTCGTT
* * *
66267403 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
66267443 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
66267482 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
66267522 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
66267562 CAAATGCCTTCGG
1 CAAATGCCTTCGG
66267575 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:66284221 original size:37 final size:36
Alignment explanation
Indices: 66284180--66284285 Score: 114
Period size: 37 Copynumber: 2.9 Consensus size: 36
66284170 ATTTATTGAT
66284180 ATTTGTGCTATTGAATGATTC-GGCTAAGTCCGAAGGC
1 ATTTGTGCTA-TGAAT-ATTCGGGCTAAGTCCGAAGGC
*
66284217 ATTTGTGCTAGTGACTATATCCGGGCT-AGTCCG-AGGC
1 ATTTGTGCTA-TGA--ATATTCGGGCTAAGTCCGAAGGC
*
66284254 ATTTGT-CTATG-ATATTCGGGCTAAGACCGAAG
1 ATTTGTGCTATGAATATTCGGGCTAAGTCCGAAG
66284286 TGTGCGAGTT
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
32 10 0.17
33 5 0.08
34 2 0.03
35 2 0.03
36 3 0.05
37 23 0.38
38 9 0.15
39 6 0.10
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (36 bp):
ATTTGTGCTATGAATATTCGGGCTAAGTCCGAAGGC
Found at i:66292122 original size:40 final size:39
Alignment explanation
Indices: 66292047--66292224 Score: 281
Period size: 40 Copynumber: 4.6 Consensus size: 39
66292037 TATTCGAATG
66292047 ATATCCGGCTAA-TCCCGAAGGCA-TTGTGCTAGTGACT
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66292084 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66292124 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66292164 ATATCCGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
66292203 ATATCCGGCTAAATCCCGAAGG
1 ATATCCGGCTAAGTCCCGAAGG
66292225 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
37 6 0.05
38 6 0.05
39 59 0.44
40 62 0.47
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (39 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:66292182 original size:79 final size:77
Alignment explanation
Indices: 66292047--66292224 Score: 279
Period size: 79 Copynumber: 2.3 Consensus size: 77
66292037 TATTCGAATG
*
66292047 ATATCCGGCTAATCCCGAAGGCATTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 ATATCCGGCTAATCCCGAAGGCATTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTT
*
66292112 GTGCTAG-TGACT
66 GTGCGAGTTG-CT
66292124 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGACCCGAAGGCA
1 ATATCC-GGCTAA-TCCCGAAGGCA-TTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
66292188 TTTGTGCGAGTTGCT
63 TTTGTGCGAGTTGCT
66292203 ATATCCGGCTAAATCCCGAAGG
1 ATATCCGGCT-AATCCCGAAGG
66292225 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 2, Indels: 9
0.90 0.02 0.09
Matches are distributed among these distances:
77 6 0.06
78 19 0.20
79 47 0.50
80 22 0.23
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (77 bp):
ATATCCGGCTAATCCCGAAGGCATTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGTTGCT
Found at i:66300088 original size:40 final size:40
Alignment explanation
Indices: 66300033--66300214 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
66300023 TATTCGAATG
*
66300033 ATATCCTGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66300073 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
66300113 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
66300153 ATATCCGGGCTAAGACCGGAAGGCATTTGTGCGACTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* *
66300193 ATATCC-GGCTAAATCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
66300215 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.10
40 116 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:66307945 original size:20 final size:20
Alignment explanation
Indices: 66307920--66307959 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
66307910 CTAACTTGGC
66307920 TCTAATTTGGGATGTTACAA
1 TCTAATTTGGGATGTTACAA
66307940 TCTAATTTGGGATGTTACAA
1 TCTAATTTGGGATGTTACAA
66307960 CTCTCCCCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (20 bp):
TCTAATTTGGGATGTTACAA
Found at i:66316501 original size:44 final size:48
Alignment explanation
Indices: 66316453--66316553 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 48
66316443 AAGAATAGTT
* *
66316453 TGGGACATGGCATC-AGC-TTGTTGAG-T-GTCAGTGTAAGACCA-GTC
1 TGGGACATGGCATCGA-CTTTGATGAGCTAGCCAGTGTAAGACCATGTC
*
66316497 TGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCATGTC
1 TGGGACATGGCATCGACTTTGATGAGCTAGCCAGTGTAAGACCATGTC
66316545 TGGGACATG
1 TGGGACATG
66316554 ACGTCGGCAT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
44 15 0.31
45 7 0.14
46 1 0.02
47 14 0.29
48 12 0.24
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.27
Consensus pattern (48 bp):
TGGGACATGGCATCGACTTTGATGAGCTAGCCAGTGTAAGACCATGTC
Found at i:66321277 original size:37 final size:37
Alignment explanation
Indices: 66321200--66321278 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
66321190 TTATTACGAA
* * * * *
66321200 GTCTTACCCGAACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACAAAATCCCCAAACGAAGTCATCAG
* *
66321237 GTCTTACCCGGACAAAATCCCCAAACGTAGTCATCAG
1 GTCTTACCCGAACAAAATCCCCAAACGAAGTCATCAG
66321274 GTCTT
1 GTCTT
66321279 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCCCCAAACGAAGTCATCAG
Found at i:66321523 original size:47 final size:47
Alignment explanation
Indices: 66321397--66321879 Score: 795
Period size: 47 Copynumber: 10.1 Consensus size: 47
66321387 CCCTTCGGGA
* * * * * *
66321397 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66321444 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66321493 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66321540 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66321587 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66321634 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66321681 CCTATCACATATATATACACTTTCACATTCATCACAACGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66321730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66321777 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66321826 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66321873 CTTATCA
1 CTTATCA
66321880 TCATTTCATA
Statistics
Matches: 414, Mismatches: 16, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
47 284 0.69
49 130 0.31
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66321601 original size:96 final size:96
Alignment explanation
Indices: 66321397--66321879 Score: 798
Period size: 96 Copynumber: 5.1 Consensus size: 96
66321387 CCCTTCGGGA
* * * * * * *
66321397 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
66321460 ACACTTCCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
66321493 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66321556 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
66321587 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66321650 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
66321681 CCTATCACATATATATACACTTTCACATTCATCACAACGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66321746 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
66321777 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66321842 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
66321873 CTTATCA
1 CTTATCA
66321880 TCATTTCATA
Statistics
Matches: 369, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 138 0.37
95 1 0.00
96 230 0.62
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66321702 original size:143 final size:141
Alignment explanation
Indices: 66321397--66321879 Score: 795
Period size: 143 Copynumber: 3.4 Consensus size: 141
66321387 CCCTTCGGGA
* * * * * * *
66321397 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATAC
*
66321462 ACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66321527 TCGGCCATTAGGC
129 TCGGCCATTAGGC
66321540 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
*
66321605 TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66321670 GGCCATTAGGC
131 GGCCATTAGGC
* * *
66321681 CCTATCACATATATATACACTTTCACATTCATCACAACGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
66321746 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
66321811 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
*
66321826 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCA
66321880 TCATTTCATA
Statistics
Matches: 321, Mismatches: 15, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
141 91 0.28
143 184 0.57
145 46 0.14
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:66325579 original size:40 final size:40
Alignment explanation
Indices: 66325371--66325672 Score: 278
Period size: 40 Copynumber: 7.6 Consensus size: 40
66325361 CCAGCATGAT
* * * *
66325371 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
66325411 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
66325451 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
66325491 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
66325531 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
66325572 TGC-CTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATA-TA-TCA-CTAGCACGAA
** *
66325611 TGC-CTTC-GGATCTTAGTTCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
66325651 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
66325673 CATCATTCGA
Statistics
Matches: 223, Mismatches: 29, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
38 3 0.01
39 31 0.14
40 167 0.75
41 22 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:66325598 original size:39 final size:40
Alignment explanation
Indices: 66325529--66325672 Score: 152
Period size: 39 Copynumber: 3.6 Consensus size: 40
66325519 CACTAGCATG
* *
66325529 AATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
1 AATGC-CTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
*
66325570 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
** * * *
66325609 AATGCCTTC-GGATCTTAGTTCGG-ATATGGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCACA
66325650 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
66325673 CATCATTCGA
Statistics
Matches: 86, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
38 2 0.02
39 35 0.41
40 33 0.38
41 16 0.19
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
Found at i:66326029 original size:29 final size:29
Alignment explanation
Indices: 66325982--66326060 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
66325972 CTTAATAATC
*
66325982 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
** *
66326012 AATTCGCACACTTAGTGCTATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
66326041 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
66326061 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
28 3 0.08
29 35 0.88
30 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:66326084 original size:16 final size:16
Alignment explanation
Indices: 66326063--66326096 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
66326053 TAGTGCCAAT
66326063 CTCACAACCGTGAACA
1 CTCACAACCGTGAACA
*
66326079 CTCACAATCGTGAACA
1 CTCACAACCGTGAACA
66326095 CT
1 CT
66326097 TATTGCCCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.35, G:0.12, T:0.18
Consensus pattern (16 bp):
CTCACAACCGTGAACA
Found at i:66328020 original size:37 final size:37
Alignment explanation
Indices: 66327970--66328048 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
66327960 TTATTACGAA
* * *
66327970 GTCTTACCCGGACATAAT-CTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCT-CACACGAAGTCATCAG
*
66328007 GTCTTACCCGGACAAAATCCTCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCAG
66328044 GTCTT
1 GTCTT
66328049 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCTCACACGAAGTCATCAG
Found at i:66328289 original size:47 final size:47
Alignment explanation
Indices: 66328166--66328553 Score: 616
Period size: 47 Copynumber: 8.1 Consensus size: 47
66328156 CCCTTCGGGA
* * * * * *
66328166 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
66328213 CCTGTCACATATATATACACTTCCACATTCATCACATCGACCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66328262 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66328309 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66328356 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66328403 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66328452 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-GGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66328500 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66328547 CTTATCA
1 CTTATCA
66328554 TCATTTCATA
Statistics
Matches: 320, Mismatches: 16, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 35 0.11
47 154 0.48
48 11 0.03
49 120 0.38
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66328370 original size:96 final size:95
Alignment explanation
Indices: 66328166--66328553 Score: 620
Period size: 96 Copynumber: 4.1 Consensus size: 95
66328156 CCCTTCGGGA
* * * * * * *
66328166 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
* *
66328231 ACTTCCACATTCATCACATCGACCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
66328262 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACA
66328326 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
66328356 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
66328421 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
66328452 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT-GGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATA
66328515 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
66328547 CTTATCA
1 CTTATCA
66328554 TCATTTCATA
Statistics
Matches: 276, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
94 91 0.33
95 46 0.17
96 94 0.34
97 10 0.04
98 35 0.13
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66341471 original size:44 final size:44
Alignment explanation
Indices: 66341357--66341458 Score: 186
Period size: 44 Copynumber: 2.3 Consensus size: 44
66341347 CTGTCCCAAA
66341357 CATAGTCTTACTCGTAAACACATATCGGAATGACATATCGATGC
1 CATAGTCTTACTCGTAAACACATATCGGAATGACATATCGATGC
*
66341401 CATATTCTTACTCGTAAACACATATCGGAATGACATATCGATGC
1 CATAGTCTTACTCGTAAACACATATCGGAATGACATATCGATGC
*
66341445 CATGGTCTTACTCG
1 CATAGTCTTACTCG
66341459 CACACATATA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (44 bp):
CATAGTCTTACTCGTAAACACATATCGGAATGACATATCGATGC
Found at i:66341625 original size:26 final size:26
Alignment explanation
Indices: 66341593--66341644 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
66341583 CATATTTGGC
*
66341593 CATAACA-TATATAAATTCTAACATTT
1 CATAACAGCATATAAATT-TAACATTT
*
66341619 CATAACAGCATATAAATTTAGCATTT
1 CATAACAGCATATAAATTTAACATTT
66341645 AATTGCCGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.37
Consensus pattern (26 bp):
CATAACAGCATATAAATTTAACATTT
Found at i:66344858 original size:42 final size:44
Alignment explanation
Indices: 66344759--66344871 Score: 135
Period size: 43 Copynumber: 2.6 Consensus size: 44
66344749 AATGCCAACA
* *
66344759 TCCCAGACATGGTCTTACATGTAAAT-AAATATTGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAAATCAAATATCGATGCCACTG
* * * *
66344802 TCCCAAACAGGGTCTCACACG-AAATCAAATA-CGATGGCGA-TG
1 TCCCAGACATGGTCTTACACGTAAATCAAATATCGAT-GCCACTG
66344844 TCCCAGACATGGTCTTACACGTAAATCA
1 TCCCAGACATGGTCTTACACGTAAATCA
66344872 TAAGTCGATA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 27 0.47
43 31 0.53
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACACGTAAATCAAATATCGATGCCACTG
Found at i:66365399 original size:20 final size:21
Alignment explanation
Indices: 66365374--66365421 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
66365364 TTTCTCATAC
66365374 CACATATT-TCATATACATTT-
1 CACATATTCTCA-ATACATTTA
*
66365394 CACATATTCTCAATTCATTTA
1 CACATATTCTCAATACATTTA
66365415 CACATAT
1 CACATAT
66365422 AGCACATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (21 bp):
CACATATTCTCAATACATTTA
Found at i:66365714 original size:42 final size:43
Alignment explanation
Indices: 66365654--66365770 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 43
66365644 AACAAATATT
* *
66365654 GATGCCACTATCCCAGACAGGGTCTTACACGAAATCA-AA-TAC
1 GATGCCAATATCACAGACAGGGTCTTACACGAAATCATAAGT-C
* * * *
66365696 GATGCCAATGTCATAGACATGGTCTTACACATAAATCATAAGTC
1 GATGCCAATATCACAGACAGGGTCTTACAC-GAAATCATAAGTC
*
66365740 GATGCCAATATCCCAGAC-GTGGTCTTACACG
1 GATGCCAATATCACAGACAG-GGTCTTACACG
66365771 GAAACATCTA
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
42 25 0.42
43 6 0.10
44 28 0.47
45 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
GATGCCAATATCACAGACAGGGTCTTACACGAAATCATAAGTC
Found at i:66365763 original size:44 final size:42
Alignment explanation
Indices: 66365612--66365770 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 42
66365602 AGCTCCTACA
** * * *
66365612 ATGCCAACGTCCCAGATGTGGTCTTACATGTAAA-CAAATATTG
1 ATGCCAATATCCCAGACGTGGTCTTACACG-AAATCAAATA-CG
*
66365655 ATGCCACTATCCCAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAATATCCCAGAC-GTGGTCTTACACGAAATCAAATACG
* ** * *
66365697 ATGCCAATGTCATAGACATGGTCTTACACATAAATCATAAGT-CG
1 ATGCCAATATCCCAGACGTGGTCTTACAC-GAAATCA-AA-TACG
66365741 ATGCCAATATCCCAGACGTGGTCTTACACG
1 ATGCCAATATCCCAGACGTGGTCTTACACG
66365771 GAAACATCTA
Statistics
Matches: 93, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
42 27 0.29
43 35 0.38
44 30 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATATCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:66370042 original size:64 final size:66
Alignment explanation
Indices: 66369961--66370112 Score: 175
Period size: 67 Copynumber: 2.3 Consensus size: 66
66369951 AGACATTATG
* * * * *
66369961 ATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGAAACCATGTAGACAAGAGAGCTACGAGATA
*
66370024 T
66 A
* * *
66370025 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGAAACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACCA-GTGAAGGAAACCATGTAGACAAGAGAGCTACGAGAT
66370090 AA
65 AA
* *
66370092 AT-TGGCTAGGTCACATGGGTG
1 ATGTAGCTAGGTCGCATGGGTG
66370113 GTCTGAGTGT
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
64 24 0.33
66 18 0.25
67 31 0.42
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.24
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGAAACCATGTAGACAAGAGAGCTACGAGATA
A
Found at i:66371977 original size:32 final size:32
Alignment explanation
Indices: 66371936--66372000 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
66371926 GAATAACACA
66371936 AGGCCAACGTGCTGCCCAAGTATTTCGGGGTT
1 AGGCCAACGTGCTGCCCAAGTATTTCGGGGTT
*
66371968 AGGCCAACGTGCTGCCCAATTATTTCGGGGTT
1 AGGCCAACGTGCTGCCCAAGTATTTCGGGGTT
66372000 A
1 A
66372001 TTTTTGTCTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (32 bp):
AGGCCAACGTGCTGCCCAAGTATTTCGGGGTT
Found at i:66373714 original size:27 final size:26
Alignment explanation
Indices: 66373684--66373760 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
66373674 CTCATATCTG
*
66373684 TAGGCTAGTATTACTGAAATACCCCTA
1 TAGG-TAGAATTACTGAAATACCCCTA
* *
66373711 TAGGATAGAATTACTGAAATGCCCCTG
1 TAGG-TAGAATTACTGAAATACCCCTA
66373738 TAAGGTAGAATTACTG-AATACCC
1 T-AGGTAGAATTACTGAAATACCC
66373761 TTGGTTTACA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
26 6 0.14
27 35 0.80
28 3 0.07
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (26 bp):
TAGGTAGAATTACTGAAATACCCCTA
Found at i:66373786 original size:27 final size:27
Alignment explanation
Indices: 66373754--66373843 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
66373744 AGAATTACTG
66373754 AATACCCTTGGTTTACAAAATTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
* * *
66373781 AATACCC-TCGATTAGCAAAATTATCAA
1 AATACCCTTGGTTTA-CAAAATTACCAA
* * **
66373808 AATACCCCTGCTTTGTAAAATTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
66373835 AATATCCCT
1 AATA-CCCT
66373844 GATTGAATCG
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
26 5 0.10
27 39 0.78
28 6 0.12
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (27 bp):
AATACCCTTGGTTTACAAAATTACCAA
Found at i:66373844 original size:27 final size:26
Alignment explanation
Indices: 66373769--66373847 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 26
66373759 CCTTGGTTTA
66373769 CAAAATTACCAAAATACCCTCGATTAG
1 CAAAATTACCAAAATACCCT-GATTAG
* * *
66373796 CAAAATTATCAAAATACCCCTGCTTTG
1 CAAAATTACCAAAATA-CCCTGATTAG
*
66373823 TAAAATTACCAAAATATCCCTGATT
1 CAAAATTACCAAAATA-CCCTGATT
66373848 GAATCGATTA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 40 0.91
28 4 0.09
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (26 bp):
CAAAATTACCAAAATACCCTGATTAG
Found at i:66375565 original size:39 final size:40
Alignment explanation
Indices: 66375520--66375691 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
66375510 GCTCCTCGTT
* * *
66375520 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
66375560 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
66375599 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
66375639 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
66375679 CAAATGCCTTCGG
1 CAAATGCCTTCGG
66375692 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:66375620 original size:40 final size:39
Alignment explanation
Indices: 66375522--66375744 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
66375512 TCCTCGTTCA
* * * *
66375522 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
66375561 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
66375600 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
66375640 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
66375680 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
66375721 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
66375745 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:66375704 original size:80 final size:79
Alignment explanation
Indices: 66375520--66375744 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
66375510 GCTCCTCGTT
* * * * *
66375520 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
66375584 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
66375599 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
66375664 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
66375679 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
66375743 GA
63 GA
66375745 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:66375753 original size:41 final size:41
Alignment explanation
Indices: 66375676--66375753 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
66375666 TTTGTATCTC
* * *
66375676 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
66375717 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
66375754 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:66381205 original size:39 final size:40
Alignment explanation
Indices: 66381160--66381331 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
66381150 GCTCCTCGTT
* * *
66381160 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
66381200 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
66381239 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
66381279 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
66381319 CAAATGCCTTCGG
1 CAAATGCCTTCGG
66381332 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:66381260 original size:40 final size:39
Alignment explanation
Indices: 66381162--66381384 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
66381152 TCCTCGTTCA
* * * *
66381162 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
66381201 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
66381240 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
66381280 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
66381320 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
66381361 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
66381385 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:66381344 original size:80 final size:79
Alignment explanation
Indices: 66381160--66381384 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
66381150 GCTCCTCGTT
* * * * *
66381160 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
66381224 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
66381239 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
66381304 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
66381319 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
66381383 GA
63 GA
66381385 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:66381393 original size:41 final size:41
Alignment explanation
Indices: 66381316--66381393 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
66381306 TTTGTATCTC
* * *
66381316 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
66381357 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
66381394 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:66383425 original size:27 final size:27
Alignment explanation
Indices: 66383368--66383522 Score: 115
Period size: 27 Copynumber: 5.8 Consensus size: 27
66383358 GGGTCCCTCT
** *
66383368 AAAATTACTAAAATACCCTCAATCT-G
1 AAAATTACTAAAATACCCTTGATTTAG
* * *
66383394 TAAAATTACCAAAACACCCCTGATTTAG
1 -AAAATTACTAAAATACCCTTGATTTAG
* * *
66383422 AAAATTACTGAAATACCTTTGATTTGG
1 AAAATTACTAAAATACCCTTGATTTAG
*
66383449 AAAATTA-TAGAAATACCCTTGATTTAC
1 AAAATTACTA-AAATACCCTTGATTTAG
*
66383476 AAAATTAC-AGAAATA-CCTTGGTTT-G
1 AAAATTACTA-AAATACCCTTGATTTAG
*
66383501 CAAAATTA-TCAAAATAACCTTG
1 -AAAATTACT-AAAATACCCTTG
66383523 GTTTGTGGAT
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
26 21 0.20
27 81 0.79
28 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGATTTAG
Found at i:66383453 original size:54 final size:52
Alignment explanation
Indices: 66383368--66383514 Score: 141
Period size: 54 Copynumber: 2.7 Consensus size: 52
66383358 GGGTCCCTCT
* ** * * *
66383368 AAAATTACTAAAATACCCTCAATCTGTAAAATTACCAAAACACCCCTGATTTAG
1 AAAATTACTGAAATA-CCTTGATTTGCAAAATTA-CAAAACACCCCTGATTTAC
* * * *
66383422 AAAATTACTGAAATACCTTTGATTTGGAAAATTATAGAAATACCCTTGATTTAC
1 AAAATTACTGAAATACC-TTGATTTGCAAAATTACA-AAACACCCCTGATTTAC
* *
66383476 AAAATTACAGAAATACCTTGGTTTGCAAAATTATCAAAA
1 AAAATTACTGAAATACCTTGATTTGCAAAATTA-CAAAA
66383515 TAACCTTGGT
Statistics
Matches: 77, Mismatches: 13, Indels: 7
0.79 0.13 0.07
Matches are distributed among these distances:
53 20 0.26
54 57 0.74
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (52 bp):
AAAATTACTGAAATACCTTGATTTGCAAAATTACAAAACACCCCTGATTTAC
Found at i:66383834 original size:41 final size:41
Alignment explanation
Indices: 66383787--66383950 Score: 247
Period size: 41 Copynumber: 4.0 Consensus size: 41
66383777 GGAGGAAGAA
*
66383787 ATTGAGGATCACATGGTTGCTTGACGACTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
* *
66383828 ATTGAGGATCGTATGGTTGCTTGACAACTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
* *
66383869 ATTGAGGATCGCATGGTTGGTTAACGACTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
* * * *
66383910 ATTAAGGATCGTATGGCTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
66383951 GTGGCTTTTA
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 110 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
Found at i:66384384 original size:22 final size:22
Alignment explanation
Indices: 66384359--66384412 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
66384349 ATTGCTGTGA
* *
66384359 TGTTTACGGCTATGTGTTGTCC
1 TGTTTACAGCTATGTGATGTCC
66384381 TGTTTACAGCTATGTGATGTCC
1 TGTTTACAGCTATGTGATGTCC
66384403 TGTTTACAGC
1 TGTTTACAGC
66384413 CTTGAGCTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.15, C:0.19, G:0.24, T:0.43
Consensus pattern (22 bp):
TGTTTACAGCTATGTGATGTCC
Found at i:66385551 original size:35 final size:35
Alignment explanation
Indices: 66385505--66385571 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
66385495 CCTTGGGTAC
* *
66385505 GATCCTCGAAATACTTCTAAGTATTTATTGTACAA
1 GATCCTCGAAATACTTCCAAGTATTCATTGTACAA
*
66385540 GATCCTCGAAATAGTTCCAAGTATTCATTGTA
1 GATCCTCGAAATACTTCCAAGTATTCATTGTA
66385572 TAATCTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (35 bp):
GATCCTCGAAATACTTCCAAGTATTCATTGTACAA
Found at i:66387643 original size:23 final size:23
Alignment explanation
Indices: 66387613--66387656 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
66387603 TAAAGAGAGC
66387613 ATCTATATAATGGAACCAACCGG
1 ATCTATATAATGGAACCAACCGG
66387636 ATCTATATAATGGAACCAACC
1 ATCTATATAATGGAACCAACC
66387657 CATATAAGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.23
Consensus pattern (23 bp):
ATCTATATAATGGAACCAACCGG
Found at i:66397298 original size:39 final size:39
Alignment explanation
Indices: 66397244--66397473 Score: 388
Period size: 39 Copynumber: 5.9 Consensus size: 39
66397234 TATCAGTACA
*
66397244 AAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
66397283 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAACACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
66397322 AAGCCTGCGGGACTTTAGCCCAGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * *
66397361 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCATG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
66397400 AAGCGTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
66397439 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
66397474 TGTCTTGCAT
Statistics
Matches: 176, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 176 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:66402969 original size:39 final size:39
Alignment explanation
Indices: 66402924--66403122 Score: 335
Period size: 39 Copynumber: 5.1 Consensus size: 39
66402914 AAGCAAGACA
*
66402924 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
66402963 CTGGAAATGTATCCGGGCTAAAGTCCCGAAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
66403002 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
66403041 CTGGAAATGTATTCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
66403080 CTGGAAATGTATCCGAGCTAAAGTCCTGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
66403119 CTGG
1 CTGG
66403123 TAATATAATT
Statistics
Matches: 150, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 150 1.00
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Done.