Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 204 of 316
Found at i:66404973 original size:30 final size:30
Alignment explanation
Indices: 66404939--66404997 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
66404929 TGTTACAGAA
66404939 TAGGTATATCATTCAAGCCCTTACATTGTT
1 TAGGTATATCATTCAAGCCCTTACATTGTT
66404969 TAGGTATATCATTCAAGCCCTTACATTGT
1 TAGGTATATCATTCAAGCCCTTACATTGT
66404998 CTAACTAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (30 bp):
TAGGTATATCATTCAAGCCCTTACATTGTT
Found at i:66406533 original size:14 final size:14
Alignment explanation
Indices: 66406514--66406546 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
66406504 ACGGGGCTAG
66406514 GGAGCACTTACTAT
1 GGAGCACTTACTAT
66406528 GGAGCACTTACTAT
1 GGAGCACTTACTAT
*
66406542 TGAGC
1 GGAGC
66406547 TTGAAATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (14 bp):
GGAGCACTTACTAT
Found at i:66407199 original size:25 final size:25
Alignment explanation
Indices: 66407158--66407225 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
66407148 GGTTCGTTTT
* * *
66407158 ACAACTCATGTGTGCATTTACAGTC
1 ACAACTCGTGTGAGCATTTACAATC
*
66407183 ACAGCTCGTGTGAGCATTTACAATC
1 ACAACTCGTGTGAGCATTTACAATC
*
66407208 ACAACTTGTGTGAGCATT
1 ACAACTCGTGTGAGCATT
66407226 GTTCCAACAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (25 bp):
ACAACTCGTGTGAGCATTTACAATC
Found at i:66407327 original size:27 final size:26
Alignment explanation
Indices: 66407284--66407354 Score: 97
Period size: 27 Copynumber: 2.7 Consensus size: 26
66407274 TGAGTAAACG
*
66407284 AAAATGGTAATATGAAATAGATATAC
1 AAAATGGTTATATGAAATAGATATAC
* *
66407310 AAAATGTTTATATGGAAATAGATATAT
1 AAAATGGTTATAT-GAAATAGATATAC
*
66407337 GAAATGGTTATATGAAAT
1 AAAATGGTTATATGAAAT
66407355 GTTTATAAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 16 0.41
27 23 0.59
ACGTcount: A:0.49, C:0.01, G:0.17, T:0.32
Consensus pattern (26 bp):
AAAATGGTTATATGAAATAGATATAC
Found at i:66407335 original size:14 final size:13
Alignment explanation
Indices: 66407293--66407354 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
66407283 GAAAATGGTA
66407293 ATATGAAATAGAT
1 ATATGAAATAGAT
** *
66407306 ATACAAAAT-GTTT
1 ATATGAAATAG-AT
66407319 ATATGGAAATAGAT
1 ATAT-GAAATAGAT
* *
66407333 ATATGAAATGGTT
1 ATATGAAATAGAT
66407346 ATATGAAAT
1 ATATGAAAT
66407355 GTTTATAAGA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
12 1 0.03
13 27 0.71
14 9 0.24
15 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (13 bp):
ATATGAAATAGAT
Found at i:66407337 original size:40 final size:39
Alignment explanation
Indices: 66407293--66407387 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 39
66407283 GAAAATGGTA
*
66407293 ATATGAAATAGATATACAAAATGTTTATATGGAAATAGAT
1 ATATGAAATAGATATACAAAATGTTTATA-AGAAATAGAT
* * ** **
66407333 ATATGAAATGGTTATATGAAATGTTTATAAGAAATATTT
1 ATATGAAATAGATATACAAAATGTTTATAAGAAATAGAT
*
66407372 ATATAAATATAGATAT
1 ATATGAA-ATAGATAT
66407388 GTGAAAAGGG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
39 13 0.30
40 31 0.70
ACGTcount: A:0.48, C:0.01, G:0.14, T:0.37
Consensus pattern (39 bp):
ATATGAAATAGATATACAAAATGTTTATAAGAAATAGAT
Found at i:66407360 original size:13 final size:13
Alignment explanation
Indices: 66407311--66407379 Score: 70
Period size: 13 Copynumber: 5.3 Consensus size: 13
66407301 TAGATATACA
66407311 AAATGTTTATATGG
1 AAATGTTTATAT-G
*
66407325 AAATAG-ATATATG
1 AAAT-GTTTATATG
*
66407338 AAATGGTTATATG
1 AAATGTTTATATG
*
66407351 AAATGTTTATAAG
1 AAATGTTTATATG
*
66407364 AAATATTTATAT-
1 AAATGTTTATATG
66407376 AAAT
1 AAAT
66407380 ATAGATATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
12 5 0.11
13 32 0.68
14 9 0.19
15 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.39
Consensus pattern (13 bp):
AAATGTTTATATG
Found at i:66407373 original size:53 final size:53
Alignment explanation
Indices: 66407285--66407393 Score: 125
Period size: 53 Copynumber: 2.1 Consensus size: 53
66407275 GAGTAAACGA
* *
66407285 AAATGGTAATATGAAATAGATATACAAAATGTTTATATGGAA-ATAGATATATG
1 AAATGGTAATATGAAATAGATATACAAAATATTTATAT-AAATATAGATATATG
* * *
66407338 AAATGGTTATATGAAAT-GTTTATA-AGAAATATTTATATAAATATAGATATGTG
1 AAATGGTAATATGAAATAG-ATATACA-AAATATTTATATAAATATAGATATATG
66407391 AAA
1 AAA
66407394 AGGGACATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
52 4 0.08
53 44 0.92
ACGTcount: A:0.49, C:0.01, G:0.16, T:0.35
Consensus pattern (53 bp):
AAATGGTAATATGAAATAGATATACAAAATATTTATATAAATATAGATATATG
Found at i:66409016 original size:24 final size:24
Alignment explanation
Indices: 66408949--66409015 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 24
66408939 AATTATCCTG
66408949 AAAGGATAACAAGTGAAAAGGTCAA
1 AAAGGATAACAA-TGAAAAGGTCAA
* * *
66408974 AAAGAATATCATTGAAAAGGTCAA
1 AAAGGATAACAATGAAAAGGTCAA
66408998 AAATGGATAACAATGAAA
1 AAA-GGATAACAATGAAA
66409016 GTTTGGTATC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 15 0.43
25 20 0.57
ACGTcount: A:0.57, C:0.07, G:0.19, T:0.16
Consensus pattern (24 bp):
AAAGGATAACAATGAAAAGGTCAA
Found at i:66411457 original size:16 final size:13
Alignment explanation
Indices: 66411417--66411453 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
66411407 CTAAAAATGC
*
66411417 AAAAGTCATCAAG
1 AAAAATCATCAAG
66411430 AAAAATCATCAAG
1 AAAAATCATCAAG
66411443 AAAAATCATCA
1 AAAAATCATCA
66411454 TCAAAATTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.59, C:0.16, G:0.08, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:66411459 original size:13 final size:13
Alignment explanation
Indices: 66411416--66411459 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
66411406 TCTAAAAATG
*
66411416 CAAAAGTCATCAA
1 CAAAAATCATCAA
*
66411429 GAAAAATCATCAA
1 CAAAAATCATCAA
* *
66411442 GAAAAATCATCAT
1 CAAAAATCATCAA
66411455 CAAAA
1 CAAAA
66411460 TTACTTACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.59, C:0.18, G:0.07, T:0.16
Consensus pattern (13 bp):
CAAAAATCATCAA
Found at i:66413510 original size:43 final size:42
Alignment explanation
Indices: 66413445--66413543 Score: 153
Period size: 43 Copynumber: 2.3 Consensus size: 42
66413435 GGCAGAGACA
*
66413445 CAGCCGTGTGAAGGACATGGCCTTAGGACATAGGCGTGTGTC
1 CAGCCGTGTGAAGGACACGGCCTTAGGACATAGGCGTGTGTC
*
66413487 TCAGCCGTGTGAAGGACACGGCCTTAGGACATGGGCGTGTGTC
1 -CAGCCGTGTGAAGGACACGGCCTTAGGACATAGGCGTGTGTC
*
66413530 CATGCCGCGTGAAG
1 CA-GCCGTGTGAAG
66413544 TCTGTAGTTC
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
42 2 0.04
43 50 0.96
ACGTcount: A:0.20, C:0.23, G:0.36, T:0.20
Consensus pattern (42 bp):
CAGCCGTGTGAAGGACACGGCCTTAGGACATAGGCGTGTGTC
Found at i:66418436 original size:44 final size:44
Alignment explanation
Indices: 66418373--66418461 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
66418363 AAGTGTACTT
66418373 AAAATATGAACATGTAACACCTCTTGCCCGTATCCGATTCCAGG
1 AAAATATGAACATGTAACACCTCTTGCCCGTATCCGATTCCAGG
66418417 AAAATATGAACATGTAACACCTCTTGCCCGTATCCGATTCCAGG
1 AAAATATGAACATGTAACACCTCTTGCCCGTATCCGATTCCAGG
66418461 A
1 A
66418462 TAGGGTTCGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (44 bp):
AAAATATGAACATGTAACACCTCTTGCCCGTATCCGATTCCAGG
Found at i:66426585 original size:9 final size:9
Alignment explanation
Indices: 66426561--66426606 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
66426551 TGAGTTTTCG
*
66426561 AATTCGAAA
1 AATTCGAAT
*
66426570 AACTCGAAT
1 AATTCGAAT
66426579 AATTCGAAT
1 AATTCGAAT
66426588 AATTCGAAT
1 AATTCGAAT
*
66426597 AATTTGAAT
1 AATTCGAAT
66426606 A
1 A
66426607 TCAAACTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:66434804 original size:43 final size:43
Alignment explanation
Indices: 66434670--66434826 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
66434660 TGTATTATCG
* *
66434670 TGTAAGACCACGTCTGGGA-TGTTGGCATCGA-ATTATGATTTACA
1 TGTAAGACCACGTCTAGGACAG-TGGCATCGATATT-TGA-TTACA
* * ***
66434714 TGTAAGACCACGTCTAGGACATTGGCATTG-TATTTGATTTTG
1 TGTAAGACCACGTCTAGGACAGTGGCATCGATATTTGATTACA
* * *
66434756 TGTAAGATCC-TGTCTAGGATAGTGGCATCGATATTTGATTGCA
1 TGTAAGA-CCACGTCTAGGACAGTGGCATCGATATTTGATTACA
* *
66434799 TGTAAGACGACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTAGGACAG-TGGCAT
66434827 TGTATGAGCT
Statistics
Matches: 89, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
42 27 0.30
43 34 0.38
44 28 0.31
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACAGTGGCATCGATATTTGATTACA
Found at i:66438117 original size:40 final size:40
Alignment explanation
Indices: 66438072--66438305 Score: 323
Period size: 40 Copynumber: 5.8 Consensus size: 40
66438062 TGATACTTGA
66438072 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
* * * * *
66438112 AGAATTGTATCTGAGCTTAAAGACTCGCAGGCT-TCGTGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCT
* *
66438152 GGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGTT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
66438192 GGAA-TGTTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
1 GGAATTG-TATCCGGGCTTAAAGACCCGCAGGCTATATGCT
*
66438232 GGAA-TGTTATCCGGGCTTAAAGAACCGCAGGCT-TCATGCT
1 GGAATTG-TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCT
*
66438272 GGAATTGTATCCGGGCTTAAAGACCTGCAGGCTA
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTA
66438306 CAAGCTAGTA
Statistics
Matches: 173, Mismatches: 15, Indels: 11
0.87 0.08 0.06
Matches are distributed among these distances:
39 4 0.02
40 166 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
Found at i:66438288 original size:120 final size:120
Alignment explanation
Indices: 66438079--66438305 Score: 368
Period size: 120 Copynumber: 1.9 Consensus size: 120
66438069 TGAGGAATTG
*
66438079 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTGTATCTGAGCTTAAAGACTCGCAGGC
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTGTATCCGAGCTTAAAGACTCGCAGGC
* *
66438144 TTCGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGTTGGAATGT
66 TTCATGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGTTGGAATGT
* *
66438199 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAA-TGTTATCCGGGCTTAAAGAAC-CGCAG
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTG-TATCCGAGCTTAAAG-ACTCGCAG
*
66438262 GCTTCATGCTGGAATTGTATCCGGGCTTAAAGACCTGCAGGCTA
64 GCTTCATGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTA
66438306 CAAGCTAGTA
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
119 2 0.02
120 95 0.96
121 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (120 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTGTATCCGAGCTTAAAGACTCGCAGGC
TTCATGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGTTGGAATGT
Found at i:66439259 original size:30 final size:30
Alignment explanation
Indices: 66439201--66439260 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
66439191 TTCCCGAGCC
* *
66439201 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
66439231 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
66439261 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:66455968 original size:120 final size:120
Alignment explanation
Indices: 66455762--66455980 Score: 377
Period size: 120 Copynumber: 1.8 Consensus size: 120
66455752 TGAGGAATTG
*
66455762 TATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGC
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGC
*
66455827 TTCGTGCTAGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAATGT
66 TTCATGCTAGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAATGT
* *
66455882 TATCCGGGCTTTAAGACCCGCAGGCTATATGCTGGAA-TGTTATCTGGGCTTAAAGACCCGCAGG
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTG-TATCCGGGCTTAAAGACCCGCAGG
*
66455946 CTTCATGCTGGAATTGTATCCGGGCTTAAAGACCC
65 CTTCATGCTAGAATTGTATCCGGGCTTAAAGACCC
66455981 GTAAGCTACG
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
119 2 0.02
120 91 0.98
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (120 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGC
TTCATGCTAGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAATGT
Found at i:66455996 original size:40 final size:40
Alignment explanation
Indices: 66455755--66455981 Score: 336
Period size: 40 Copynumber: 5.7 Consensus size: 40
66455745 TGATACTTGA
*
66455755 GGAATTGTATCCGGGCTTAAAGACCCGTAGGCTATATGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
*
66455795 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCT
* *
66455835 AGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGCT
1 GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
*
66455875 GGAA-TGTTATCCGGGCTTTAAGACCCGCAGGCTATATGCT
1 GGAATTG-TATCCGGGCTTAAAGACCCGCAGGCTATATGCT
*
66455915 GGAA-TGTTATCTGGGCTTAAAGACCCGCAGGCT-TCATGCT
1 GGAATTG-TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCT
66455955 GGAATTGTATCCGGGCTTAAAGACCCG
1 GGAATTGTATCCGGGCTTAAAGACCCG
66455982 TAAGCTACGA
Statistics
Matches: 171, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 4 0.02
40 164 0.96
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCT
Found at i:66465534 original size:19 final size:19
Alignment explanation
Indices: 66465512--66465553 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
66465502 GTCATACATG
66465512 TGTTTATTACCTATACTCA
1 TGTTTATTACCTATACTCA
*
66465531 TGTTTATTATCTATACTCA
1 TGTTTATTACCTATACTCA
66465550 TGTT
1 TGTT
66465554 ACACCAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.52
Consensus pattern (19 bp):
TGTTTATTACCTATACTCA
Found at i:66466957 original size:50 final size:50
Alignment explanation
Indices: 66466892--66467181 Score: 285
Period size: 50 Copynumber: 5.7 Consensus size: 50
66466882 ACAGAAGCTC
* * * *
66466892 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* ** *
66466942 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTTAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* * ** *
66466992 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCTAACAA
* * * * * *
66467043 TCGGGTACACATAGTAGCCTGCACTTAGTACTATATATGCAACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* * **
66467093 TCGGGTACACGTAGTAGCCTGCATTTAGTACTACACACTTGACCTAA-AA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
** * * *
66467142 CTGTCTGAAACACATAGTAGCCTGCACATAGTACTGCACA
1 ---TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
66467182 TGTGTTCTCA
Statistics
Matches: 198, Mismatches: 38, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
49 2 0.01
50 127 0.64
51 39 0.20
52 30 0.15
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
Found at i:66467102 original size:101 final size:100
Alignment explanation
Indices: 66466903--66467181 Score: 297
Period size: 101 Copynumber: 2.8 Consensus size: 100
66466893 CTGGTACGCA
* * ** * * *
66466903 TAGTAGCCTGCACTTAGTACTACACAAGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAAACTATCTGGTACACATAGTAGCCTGCACTT
** ** * *
66466968 AGTACTACACACGTGATTTAACTATCTGATACACG
66 AGTACTACACACGCAACCTAACAATCGGATACACG
* *
66467003 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAAACTATCTGGTACACATAGTAGCCTGCACT
* * * *
66467068 TAGTACTATATATGCAACCTAACAATCGGGTACACG
65 TAGTACTACACACGCAACCTAACAATCGGATACACG
* * * **
66467104 TAGTAGCCTGCATTTAGTACTACACACTTGACCTAAAACTGTCTGAAACACATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-AAAACTATCTGGTACACATAGTAGCCTGCAC
* *
66467169 ATAGTACTGCACA
64 TTAGTACTACACA
66467182 TGTGTTCTCA
Statistics
Matches: 147, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
100 29 0.20
101 83 0.56
102 35 0.24
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAAACTATCTGGTACACATAGTAGCCTGCACTT
AGTACTACACACGCAACCTAACAATCGGATACACG
Found at i:66472385 original size:25 final size:25
Alignment explanation
Indices: 66472357--66472435 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
66472347 CTAATGGCCG
66472357 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
66472382 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
66472404 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
66472429 ATGTGAT
1 ATGTGAT
66472436 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:66472407 original size:47 final size:47
Alignment explanation
Indices: 66472341--66472532 Score: 285
Period size: 47 Copynumber: 4.1 Consensus size: 47
66472331 GAAATGATAG
66472341 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66472388 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66472435 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTTA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
66472482 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66472529 TAAG
1 TAAG
66472533 TCCCAAAGGG
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:66472707 original size:37 final size:37
Alignment explanation
Indices: 66472651--66472729 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66472641 CCGAGCTCTA
* *
66472651 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
66472688 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66472725 AAGAC
1 AAGAC
66472730 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66477725 original size:50 final size:50
Alignment explanation
Indices: 66477639--66478028 Score: 375
Period size: 50 Copynumber: 7.7 Consensus size: 50
66477629 ATTGAAGCTC
* * * * *
66477639 TCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* * * * *
66477689 TCTAGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* * * *
66477739 TCTGATACACGTAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* * * * *
66477789 TCCGGTACACGTAGTAGCCTACACTTAGTACTGCACACGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* * * * * ** *
66477839 TTTGATACACGTAGTAGCCTACACTTATTACTACACACGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCTAACAA
* * * *
66477890 TCGGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* * * * *
66477940 TCTGGTACACGTAGTAACCTGTACTTAGTACTACACACGTGAACTAAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACAA
*** * * *
66477992 TCTTAAACACATTGTAGCCTGCACATAGTACTACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
66478029 TGTGTTCTCA
Statistics
Matches: 274, Mismatches: 63, Indels: 4
0.80 0.18 0.01
Matches are distributed among these distances:
50 201 0.73
51 40 0.15
52 33 0.12
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
Found at i:66477784 original size:100 final size:100
Alignment explanation
Indices: 66477650--66477976 Score: 420
Period size: 100 Copynumber: 3.3 Consensus size: 100
66477640 CTGGTACGCA
* ** **
66477650 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGTACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTACACTT
*
66477715 AGTACTACACACGTGACTTAACCATCTGATACACG
66 AGTACTACACACGTGACCTAACCATCTGATACACG
*
66477750 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTACACTT
* *
66477815 AGTACTGCACACGTGACCTAACCATTTGATACACG
66 AGTACTACACACGTGACCTAACCATCTGATACACG
* * * * ** * * * *
66477850 TAGTAGCCTACACTTATTACTACACACGTGATCGAAACTATCGGGTACACATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCTATCAATCCGGTACACGTAGTAGCCTACACT
* * * *
66477915 TAGTACTACACATGCGACCTAACAATCTGGTACACG
65 TAGTACTACACACGTGACCTAACCATCTGATACACG
* *
66477951 TAGTAACCTGTACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
66477977 CGTGAACTAA
Statistics
Matches: 196, Mismatches: 30, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
100 117 0.60
101 79 0.40
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTACACTT
AGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:66477966 original size:151 final size:150
Alignment explanation
Indices: 66477694--66477986 Score: 415
Period size: 151 Copynumber: 1.9 Consensus size: 150
66477684 ATCAATCTAG
** ** * * *
66477694 TACACGTAGTAGCCTGTACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCTT
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGACGAAACCATCGGATACACATAGTAGCCT
* * * *
66477759 GCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGCCTACACTTAGTACTGCA
66 ACACTTAGTACTACACATGCGACCTAACAATCCGGTACACGTAGTAACCTACACTTAGTACTACA
*
66477824 CACGTGACCTAACCATTTGA
131 CACGTGAACTAACCATTTGA
* * *
66477844 TACACGTAGTAGCCTACACTTATTACTACACACGTGATCGAAACTATCGGGTACACATAGTAGCC
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGA-CGAAACCATCGGATACACATAGTAGCC
* **
66477909 TACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAACCTGTACTTAGTACTAC
65 TACACTTAGTACTACACATGCGACCTAACAATCCGGTACACGTAGTAACCTACACTTAGTACTAC
66477974 ACACGTGAACTAA
130 ACACGTGAACTAA
66477987 AACTATCTTA
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
150 34 0.27
151 90 0.73
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (150 bp):
TACACGTAGTAGCCTACACTTAGTACTACACACGTGACGAAACCATCGGATACACATAGTAGCCT
ACACTTAGTACTACACATGCGACCTAACAATCCGGTACACGTAGTAACCTACACTTAGTACTACA
CACGTGAACTAACCATTTGA
Found at i:66478042 original size:102 final size:101
Alignment explanation
Indices: 66477695--66478030 Score: 280
Period size: 101 Copynumber: 3.3 Consensus size: 101
66477685 TCAATCTAGT
* ** * * * * * * * * *
66477695 ACACGTAGTAGCCTGTACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCTTG
1 ACACATAGTAGCCTACACATAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAACCTA
* * ** * * *
66477760 CACTTAGTACTACACATGCG-ACCTATCAATCCGG-T
66 CACTTAGTACTACACACGTGAACAAAACTAT-CGGAA
* * * * * * * * *
66477795 ACACGTAGTAGCCTACACTTAGTACTGCACACGTGACCTAACCATTTGATACACGTAGTAGCCTA
1 ACACATAGTAGCCTACACATAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAACCTA
* * * **
66477860 CACTTATTACTACACACGTGATCGAAACTATCGGGT
66 CACTTAGTACTACACACGTGAACAAAACTATCGGAA
* *
66477896 ACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAACCTG
1 ACACATAGTAGCCTACACATAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAACCTA
* **
66477961 TACTTAGTACTACACACGTGAACTAAAACTATCTTAA
66 CACTTAGTACTACACACGTGAAC-AAAACTATCGGAA
* *
66477998 ACACATTGTAGCCTGCACATAGTACTACACATG
1 ACACATAGTAGCCTACACATAGTACTACACATG
66478031 TGTTCTCACA
Statistics
Matches: 198, Mismatches: 35, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
100 78 0.39
101 82 0.41
102 38 0.19
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (101 bp):
ACACATAGTAGCCTACACATAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAACCTA
CACTTAGTACTACACACGTGAACAAAACTATCGGAA
Found at i:66484086 original size:46 final size:45
Alignment explanation
Indices: 66484019--66484193 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
66484009 TGTAACCCGC
66484019 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
66484065 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
66484111 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
66484158 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
66484194 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.66
47 33 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:66484139 original size:93 final size:93
Alignment explanation
Indices: 66484027--66484197 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
66484017 GCCCATAAGT
* * * *
66484027 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
66484092 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
66484120 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
66484185 CGAGTTCGGATGC
66 CGAGCTCGGATGC
66484198 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:66484213 original size:46 final size:46
Alignment explanation
Indices: 66484024--66484213 Score: 126
Period size: 46 Copynumber: 4.1 Consensus size: 46
66484014 CCCGCCCATA
** * *
66484024 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCC-T
66484069 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATC-CT
* * * * * * *
66484119 --CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTC-G-GATGCTCAACCATCCT
* *
66484163 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
66484209 AGTGA
1 AGTGA
66484214 CATGTCACTT
Statistics
Matches: 113, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 62 0.55
47 28 0.25
48 1 0.01
49 4 0.04
50 6 0.05
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
Found at i:66485945 original size:30 final size:30
Alignment explanation
Indices: 66485901--66485989 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
66485891 CAAAGATAAC
66485901 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
66485930 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
66485960 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
66485990 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:66485949 original size:15 final size:15
Alignment explanation
Indices: 66485901--66485980 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
66485891 CAAAGATAAC
*
66485901 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
66485915 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
66485930 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
66485945 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
66485960 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
66485975 AAGAAA
1 AAGAAA
66485981 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:66485989 original size:15 final size:15
Alignment explanation
Indices: 66485912--66485989 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
66485902 AGAAAACCGA
66485912 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
66485927 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
66485941 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
66485956 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
66485972 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
66485987 ATA
1 ATA
66485990 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:66488101 original size:27 final size:27
Alignment explanation
Indices: 66488070--66488247 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66488060 TAAATTGTAC
66488070 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66488097 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66488123 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66488151 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66488179 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66488206 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66488233 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66488248 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66488184 original size:82 final size:81
Alignment explanation
Indices: 66488071--66488226 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66488061 AAATTGTACA
* *
66488071 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66488135 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66488152 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66488217 TGCGAGTTGA
65 TGCGAATTGA
66488227 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66488238 original size:82 final size:81
Alignment explanation
Indices: 66488067--66488247 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
66488057 GATTAAATTG
* *
66488067 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
66488132 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
66488148 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66488212 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
66488230 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66488248 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:66496009 original size:27 final size:27
Alignment explanation
Indices: 66495978--66496155 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
66495968 TAAATTGTAC
66495978 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66496005 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66496031 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66496059 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66496087 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66496114 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66496141 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66496156 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66496092 original size:82 final size:81
Alignment explanation
Indices: 66495979--66496134 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66495969 AAATTGTACA
* *
66495979 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66496043 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66496060 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66496125 TGCGAGTTGA
65 TGCGAATTGA
66496135 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66496146 original size:82 final size:81
Alignment explanation
Indices: 66495975--66496155 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
66495965 GATTAAATTG
* *
66495975 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
66496040 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
66496056 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66496120 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
66496138 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66496156 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:66500010 original size:93 final size:93
Alignment explanation
Indices: 66499898--66500068 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
66499888 GCCCATAAGT
* * * *
66499898 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAAGTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
66499963 CGAGCTCAGATGCCTAGTTACATTTCTC
66 CGAGCTCAGATGCCTAGTTACATTTCTC
*
66499991 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
66500056 CGAGTTCGGATGC
66 CGAGCTCAGATGC
66500069 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATTTCTC
Found at i:66500062 original size:46 final size:45
Alignment explanation
Indices: 66499890--66500059 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 45
66499880 TGTAACCCGC
*
66499890 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCA-GCATTCGCAT
* *
66499936 CCATAAGTGAAGTCGGACTCAACTCAACGAGCTCAG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGCATTCGC-A--T
* *** *
66499982 ACATTTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAG-CATTCGCAT
*
66500029 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
66500060 TTCGGATGCT
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 61 0.60
47 31 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGCATTCGCAT
Found at i:66507043 original size:15 final size:15
Alignment explanation
Indices: 66507023--66507051 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
66507013 TCTACTGTAT
66507023 GCAAGTGAAGATTAC
1 GCAAGTGAAGATTAC
66507038 GCAAGTGAAGATTA
1 GCAAGTGAAGATTA
66507052 ACTCTTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.10, G:0.28, T:0.21
Consensus pattern (15 bp):
GCAAGTGAAGATTAC
Found at i:66510505 original size:20 final size:20
Alignment explanation
Indices: 66510482--66510553 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 20
66510472 TAGCGGCTTG
* **
66510482 AAGCCATCAGTACCGGCACA
1 AAGCCATCAATAGTGGCACA
*
66510502 AAGCCATCAATAGTGGCCCA
1 AAGCCATCAATAGTGGCACA
*
66510522 AAACCATCAATAGTGGCACA
1 AAGCCATCAATAGTGGCACA
*
66510542 AAGCCATAAATA
1 AAGCCATCAATA
66510554 TCGCAGCAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.42, C:0.28, G:0.17, T:0.14
Consensus pattern (20 bp):
AAGCCATCAATAGTGGCACA
Found at i:66512439 original size:12 final size:12
Alignment explanation
Indices: 66512418--66512449 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
66512408 CCACAATTTC
*
66512418 CTCCTAAAATCT
1 CTCCTCAAATCT
66512430 CTCCTCAAATCT
1 CTCCTCAAATCT
66512442 CTCCTCAA
1 CTCCTCAA
66512450 CTCCCTCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.41, G:0.00, T:0.31
Consensus pattern (12 bp):
CTCCTCAAATCT
Found at i:66514567 original size:25 final size:26
Alignment explanation
Indices: 66514528--66514577 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
66514518 CCACCAATAT
66514528 CGCAGCAAAGCTGCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
*
66514554 CGCAGC-AAGCTGCCAGTATCAGTA
1 CGCAGCAAAGCTGCCAGTAACAGTA
66514578 TATGGGACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.34, C:0.28, G:0.24, T:0.14
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAA
Found at i:66514630 original size:20 final size:20
Alignment explanation
Indices: 66514584--66514678 Score: 102
Period size: 20 Copynumber: 4.8 Consensus size: 20
66514574 AGTATATGGG
*
66514584 ACAAAGCCAT-AAGTAGCGGC
1 ACAAAGCCATCAA-TAGTGGC
* * *
66514604 TCGAAGCCATCAGTAGTGGC
1 ACAAAGCCATCAATAGTGGC
* *
66514624 AAAAAGCCATGAATAGTGGC
1 ACAAAGCCATCAATAGTGGC
*
66514644 ACAGAGCCATCAATAGTGGC
1 ACAAAGCCATCAATAGTGGC
*
66514664 ACAAAGCCATAAATA
1 ACAAAGCCATCAATA
66514679 TCGCAGCAAT
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
20 59 0.98
21 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.15
Consensus pattern (20 bp):
ACAAAGCCATCAATAGTGGC
Found at i:66517050 original size:28 final size:29
Alignment explanation
Indices: 66517000--66517054 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
66516990 GACAGGGGTT
*
66517000 TTCACACGGCCAAGCACACGCCCGTGTCC
1 TTCACACGACCAAGCACACGCCCGTGTCC
*
66517029 TTCACACGACCTAG-ACACGCCCGTGT
1 TTCACACGACCAAGCACACGCCCGTGT
66517055 GGTGACCAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.22, C:0.42, G:0.20, T:0.16
Consensus pattern (29 bp):
TTCACACGACCAAGCACACGCCCGTGTCC
Found at i:66521682 original size:20 final size:20
Alignment explanation
Indices: 66521651--66521723 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
66521641 ATCAGTTTAT
* *
66521651 GGCACAAAGCCATGAGTAGC
1 GGCACGAAGCCATCAGTAGC
*
66521671 GGCTCGAAGCCATCAGTAGC
1 GGCACGAAGCCATCAGTAGC
* *
66521691 GGCACGAAGCCATCAATAGT
1 GGCACGAAGCCATCAGTAGC
*
66521711 GGCACAAAGCCAT
1 GGCACGAAGCCAT
66521724 AAATATCACA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.12
Consensus pattern (20 bp):
GGCACGAAGCCATCAGTAGC
Found at i:66523502 original size:36 final size:36
Alignment explanation
Indices: 66523452--66523524 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
66523442 CAAAATCACT
*
66523452 TTAAAAATTTGTTCAGCCTTCAACACCCTAAACACC
1 TTAAAAATTCGTTCAGCCTTCAACACCCTAAACACC
66523488 TTAAAAATTCGTTCAGCCTTCAACACCCTAAACACC
1 TTAAAAATTCGTTCAGCCTTCAACACCCTAAACACC
66523524 T
1 T
66523525 CCCCACTCCC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.32, G:0.05, T:0.27
Consensus pattern (36 bp):
TTAAAAATTCGTTCAGCCTTCAACACCCTAAACACC
Found at i:66525616 original size:43 final size:42
Alignment explanation
Indices: 66525505--66525617 Score: 111
Period size: 43 Copynumber: 2.7 Consensus size: 42
66525495 ATGATTTACC
* * * * *
66525505 TGTAAGACCACGTTTGGGACATTGACATTGGATTTAATTTCT
1 TGTAAGACCACGTCTGGGACATTGGCATCGGATTTAATTGCA
* * * * *
66525547 TGTAAGACC-CTGTCTAGAACAATGGCATCGATATTTGATTGCA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCG-GATTTAATTGCA
66525590 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
66525618 TGTACGAGCT
Statistics
Matches: 55, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
41 1 0.02
42 22 0.40
43 31 0.56
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGGATTTAATTGCA
Found at i:66536680 original size:80 final size:79
Alignment explanation
Indices: 66536596--66536767 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
66536586 GGACTAAGAT
*
66536596 CCGAAGGCATTTGTGCAAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCAAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
66536660 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * * *
66536676 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
66536741 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
66536755 CCGAAGGCATTTG
1 CCGAAGGCATTTG
66536768 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:66536747 original size:39 final size:39
Alignment explanation
Indices: 66536543--66536765 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
66536533 TTGAATGCTG
* * * * * *
66536543 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
66536583 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * *
66536622 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
66536663 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
66536703 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
66536742 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
66536766 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 40 0.26
40 105 0.67
41 11 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:66536785 original size:79 final size:80
Alignment explanation
Indices: 66536623--66536800 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
66536613 AGATACAAAT
* * * *
66536623 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
66536688 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
66536703 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
66536767 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
66536782 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
66536801 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:66543938 original size:80 final size:79
Alignment explanation
Indices: 66543854--66544025 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
66543844 GGACTAAGAT
*
66543854 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
66543918 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
66543934 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
66543999 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
66544013 CCGAAGGCATTTG
1 CCGAAGGCATTTG
66544026 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:66544005 original size:39 final size:39
Alignment explanation
Indices: 66543801--66544023 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
66543791 TTGAATGCTG
* * * * *
66543801 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
66543841 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
66543880 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
66543921 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
66543961 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
66544000 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
66544024 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:66544043 original size:79 final size:80
Alignment explanation
Indices: 66543881--66544058 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
66543871 AGATACAAAT
* * * *
66543881 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
66543946 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
66543961 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
66544025 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
66544040 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
66544059 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:66551191 original size:80 final size:79
Alignment explanation
Indices: 66551107--66551278 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
66551097 GGACTAAGAT
* *
66551107 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCAAAGG-CATTGTGCGAGATACT
* *
66551171 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
66551187 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCAAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCAAAGGCATTGTGCGAGATACTAA
*
66551252 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
66551266 CCGAAGGCATTTG
1 CCGAAGGCATTTG
66551279 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCAAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:66551258 original size:39 final size:39
Alignment explanation
Indices: 66551107--66551276 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 39
66551097 GGACTAAGAT
* * *
66551107 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * *
66551147 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
*
66551187 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * * *
66551227 CCAAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
66551266 CCGAAGGCATT
1 CCGAAGGCATT
66551277 TGAACGAGGA
Statistics
Matches: 115, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 37 0.32
40 74 0.64
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:66555091 original size:39 final size:39
Alignment explanation
Indices: 66555021--66555199 Score: 245
Period size: 39 Copynumber: 4.5 Consensus size: 39
66555011 ACAAAGCATG
* * * *
66555021 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCAGATATAACACCAGCACGAATGCCTT
*
66555061 CGGGACTTTAGCCCAGATATAACACTAGCACGAATGCCTT
1 CGGGAC-TTAGCCCAGATATAACACCAGCACGAATGCCTT
*
66555101 CGGGACTTAGCCCAGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
*
66555140 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
66555179 CGGGACTTAGCCC-GAATATAA
1 CGGGACTTAGCCCAG-ATATAA
66555200 TTCTCCATTA
Statistics
Matches: 128, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 106 0.83
40 21 0.16
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
Found at i:66556526 original size:68 final size:68
Alignment explanation
Indices: 66556454--66556631 Score: 238
Period size: 68 Copynumber: 2.6 Consensus size: 68
66556444 CATCATGTGT
* *
66556454 ACAAGAAG-GCTAC-GAGATACTATATAGTAGCTAGGTCACATGTCTGATACAGGATGTATCCCA
1 ACAAGAAGAGCTACGGAGAGA-TAAAT-GTAGCTAGGTCACATGTCTGATACAGGATGTATCCCA
66556517 TGTAG
64 TGTAG
* *
66556522 ACAAG-AGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
1 ACAAGAAGAGCTACG-GAGAGATAAATGTAGCTAGGTCACATGTCTGATACAGGATGTATCCCAT
66556586 GTAG
65 GTAG
* *
66556590 ACAAG-AGAGCTACATGAGAGATAAATGTAGCTAGGCCACATG
1 ACAAGAAGAGCTAC-GGAGAGATAAATGTAGCTAGGTCACATG
66556632 AGTGATTCCA
Statistics
Matches: 100, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
67 2 0.02
68 89 0.89
69 4 0.04
70 5 0.05
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.22
Consensus pattern (68 bp):
ACAAGAAGAGCTACGGAGAGATAAATGTAGCTAGGTCACATGTCTGATACAGGATGTATCCCATG
TAG
Found at i:66556637 original size:68 final size:68
Alignment explanation
Indices: 66556480--66556673 Score: 271
Period size: 68 Copynumber: 2.8 Consensus size: 68
66556470 ATACTATATA
* * *
66556480 GTAGCTAGGTCACATGTCTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACATGAGAGATA
66556545 AAT
66 AAT
66556548 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACATGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACATGAGAGATA
66556613 AAT
66 AAT
* * * * * * *
66556616 GTAGCTAGGCCACATGAGTGATTCCAAGTGAAGGATACCATGTAGACAAGAGAGCTAC
1 GTAGCTAGGTCACATGTGTGA-T--ACGGGATGTATCCCATGTAGACAAGAGAGCTAC
66556674 GAGATAAATG
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
68 84 0.74
69 1 0.01
71 28 0.25
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.22
Consensus pattern (68 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACATGAGAGATA
AAT
Found at i:66562856 original size:8 final size:8
Alignment explanation
Indices: 66562843--66562870 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
66562833 GGTTTATGAT
66562843 ATGATTTC
1 ATGATTTC
66562851 ATGATTTC
1 ATGATTTC
66562859 ATGATTTC
1 ATGATTTC
66562867 ATGA
1 ATGA
66562871 AAATTTCGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (8 bp):
ATGATTTC
Found at i:66564055 original size:68 final size:67
Alignment explanation
Indices: 66563983--66564166 Score: 230
Period size: 68 Copynumber: 2.7 Consensus size: 67
66563973 CATCATGTGT
66563983 ACAAGA-AGGCTACGAGATACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
1 ACAAGAGA-GCTACGAGA-ACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
66564047 GTAG
64 GTAG
* * * *
66564051 ACAAGAGAGCTACGTGAGCGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
1 ACAAGAGAGCTACGAGAACTATATA-GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
66564116 TAG
65 TAG
* * *
66564119 ACAAGAGAGCTACGTGAGAGA-TAAAT-GTAGCTAGGTCGCATGAGTGAT
1 ACAAGAGAGCTAC--GAGA-ACTATATAGTAGCTAGGTCACATGTGTGAT
66564167 TCCAAGTGAA
Statistics
Matches: 100, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
67 5 0.05
68 89 0.89
69 1 0.01
70 5 0.05
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGAACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGT
AG
Found at i:66571054 original size:40 final size:39
Alignment explanation
Indices: 66571004--66571090 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 39
66570994 CAAATCCAAT
* * **
66571004 CACCACCACAAAGCATGCGGGACTTTAAGCCTTGATATAA
1 CACCAGCACAAAGCATACGGGACTTT-AGCCCGGATATAA
* *
66571044 TACCAGCACAAAGCCTACGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCATACGGGACTTTAGCCCGGATATAA
66571083 CACCAGCA
1 CACCAGCA
66571091 TATTTCGCAA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 18 0.45
40 22 0.55
ACGTcount: A:0.34, C:0.30, G:0.18, T:0.17
Consensus pattern (39 bp):
CACCAGCACAAAGCATACGGGACTTTAGCCCGGATATAA
Found at i:66572194 original size:39 final size:38
Alignment explanation
Indices: 66572087--66572204 Score: 112
Period size: 40 Copynumber: 3.0 Consensus size: 38
66572077 CAAATCCAAT
* * * *
66572087 CACCACCACAAAGCATGCAGGACTTTAAGCCCGGATATAA
1 CACCAACACAAAGCCTACGGGACTTT-AGCCC-GATATAA
*
66572127 TACCAACACAAAGCCTACGGGACTTTAGCCCAGATATAA
1 CACCAACACAAAGCCTACGGGACTTTAGCCC-GATATAA
* * *
66572166 CACCAGCACGAATGCCTTCGGGAC-TTAGCCCGAATATAA
1 CACCAACAC-AAAGCCTACGGGACTTTAGCCCG-ATATAA
66572205 TTCTCCATTA
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
38 1 0.02
39 32 0.48
40 33 0.50
ACGTcount: A:0.36, C:0.30, G:0.18, T:0.17
Consensus pattern (38 bp):
CACCAACACAAAGCCTACGGGACTTTAGCCCGATATAA
Found at i:66583155 original size:13 final size:12
Alignment explanation
Indices: 66583139--66583191 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 12
66583129 TTCAATTTCA
66583139 TTTATTTATTTAT
1 TTTATTTATTT-T
66583152 TTTATTTATTTCT
1 TTTATTTATTT-T
*
66583165 TATTTTTTATTTT
1 T-TTATTTATTTT
*
66583178 TCTATTTTATTTT
1 TTTA-TTTATTTT
66583191 T
1 T
66583192 AGTTTAAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 1 0.03
13 24 0.71
14 9 0.26
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTATTTATTTT
Found at i:66584724 original size:12 final size:12
Alignment explanation
Indices: 66584709--66584740 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
66584699 TATTTTATTT
66584709 TTTTTATTTTTG
1 TTTTTATTTTTG
66584721 TTTTTATTTTTG
1 TTTTTATTTTTG
66584733 -TTTTATTT
1 TTTTTATTT
66584741 ATTTTTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.84
Consensus pattern (12 bp):
TTTTTATTTTTG
Found at i:66584741 original size:27 final size:26
Alignment explanation
Indices: 66584696--66584746 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 26
66584686 CTCTAAGTCC
66584696 TTTTATTTTATTTTTTTTATTTTTGT
1 TTTTATTTTATTTTTTTTATTTTTGT
66584722 TTTTATTTT-TGTTTTATTTATTTTT
1 TTTTATTTTAT-TTTT-TTTATTTTT
66584747 TGAAGACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 1 0.04
26 13 0.57
27 9 0.39
ACGTcount: A:0.12, C:0.00, G:0.04, T:0.84
Consensus pattern (26 bp):
TTTTATTTTATTTTTTTTATTTTTGT
Found at i:66584747 original size:11 final size:10
Alignment explanation
Indices: 66584696--66584747 Score: 52
Period size: 11 Copynumber: 4.9 Consensus size: 10
66584686 CTCTAAGTCC
*
66584696 TTTTATTTTA
1 TTTTTTTTTA
66584706 -TTTTTTTTA
1 TTTTTTTTTA
66584715 TTTTTGTTTTTA
1 -TTTT-TTTTTA
66584727 TTTTTGTTTTA
1 TTTTT-TTTTA
66584738 TTTATTTTTT
1 TTT-TTTTTT
66584748 GAAGACTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
9 8 0.22
10 1 0.03
11 19 0.53
12 8 0.22
ACGTcount: A:0.12, C:0.00, G:0.04, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:66588462 original size:13 final size:13
Alignment explanation
Indices: 66588444--66588468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66588434 AAGTAATCGC
66588444 ACACGGGCATGTT
1 ACACGGGCATGTT
66588457 ACACGGGCATGT
1 ACACGGGCATGT
66588469 CCCTACCAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (13 bp):
ACACGGGCATGTT
Found at i:66610214 original size:13 final size:13
Alignment explanation
Indices: 66610196--66610220 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66610186 GTGCCGTGTG
66610196 AAAGGACACGGGC
1 AAAGGACACGGGC
66610209 AAAGGACACGGG
1 AAAGGACACGGG
66610221 TGTGTGTCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (13 bp):
AAAGGACACGGGC
Found at i:66616119 original size:46 final size:46
Alignment explanation
Indices: 66615982--66616153 Score: 187
Period size: 45 Copynumber: 3.8 Consensus size: 46
66615972 GTAATTTGTG
*
66615982 TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACGA
1 TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGAC-A
* * *
66616029 GTGCTAGTGTAAGA-CATGTC-GGGGCAT-GCATTGGCCT-CGAGACA
1 -TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTACGAGACA
*
66616073 TAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTACGAGACA
1 T--GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGACA
*
66616119 TGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
66616154 ACATGGATAC
Statistics
Matches: 106, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 44 0.42
46 31 0.29
47 6 0.06
48 12 0.11
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGACA
Found at i:66624127 original size:16 final size:16
Alignment explanation
Indices: 66624103--66624153 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
66624093 AGTAATCGGC
*
66624103 AAATCCCGAAAAGCCG
1 AAATGCCGAAAAGCCG
*
66624119 AAATGCCGAAAAGTCG
1 AAATGCCGAAAAGCCG
* *
66624135 AAATGCCAAAAAGCTG
1 AAATGCCGAAAAGCCG
66624151 AAA
1 AAA
66624154 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.49, C:0.22, G:0.20, T:0.10
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:66624415 original size:28 final size:28
Alignment explanation
Indices: 66624366--66624449 Score: 150
Period size: 28 Copynumber: 3.0 Consensus size: 28
66624356 GAGCATGACT
*
66624366 GTAAATGTGATTTGGGCCTAATGGGCCAC
1 GTAAATGTGA-ATGGGCCTAATGGGCCAC
66624395 GTAAATGTGAATGGGCCTAATGGGCCAC
1 GTAAATGTGAATGGGCCTAATGGGCCAC
66624423 GTAAATGTGAATGGGCCTAATGGGCCA
1 GTAAATGTGAATGGGCCTAATGGGCCA
66624450 TATGAAAGAG
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 44 0.81
29 10 0.19
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
GTAAATGTGAATGGGCCTAATGGGCCAC
Found at i:66624468 original size:56 final size:56
Alignment explanation
Indices: 66624366--66624476 Score: 127
Period size: 56 Copynumber: 2.0 Consensus size: 56
66624356 GAGCATGACT
* * * *
66624366 GTAAATGTGATTTGGGCCTAATGGGCCACGTAAATGTGAATGGGCCTAATGGGCCAC
1 GTAAATGTGATATGGGCCTAATGGGCCACATAAATGAGAATAGGCCT-ATGGGCCAC
* * *
66624423 GTAAATGTGA-ATGGGCCTAATGGGCCATATGAAA-GAGATTAGGCCTGTGGGCCA
1 GTAAATGTGATATGGGCCTAATGGGCCACAT-AAATGAGAATAGGCCTATGGGCCA
66624477 TATATAGGTA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
55 7 0.15
56 26 0.57
57 13 0.28
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.23
Consensus pattern (56 bp):
GTAAATGTGATATGGGCCTAATGGGCCACATAAATGAGAATAGGCCTATGGGCCAC
Found at i:66626158 original size:40 final size:40
Alignment explanation
Indices: 66626069--66626163 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
66626059 TATCTGGGTA
*
66626069 TCGCACACTTAGTGCCTCA--TATAGCCGAAACCATTCTAAT
1 TCGCACACTTAGTG-CT-ATTTATAGCCGAAACCATTCGAAT
* *
66626109 TGGCACACTTAGTGCTATTTATAGCCGAAACTATTTCGAA-
1 TCGCACACTTAGTGCTATTTATAGCCGAAACCA-TTCGAAT
*
66626149 TCGCTCACTTAGTGC
1 TCGCACACTTAGTGC
66626164 CGAACACAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 39 0.83
41 5 0.11
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (40 bp):
TCGCACACTTAGTGCTATTTATAGCCGAAACCATTCGAAT
Found at i:66628039 original size:27 final size:26
Alignment explanation
Indices: 66628008--66628185 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
66627998 TAAATTGTAC
66628008 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
66628035 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
66628061 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
66628089 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
66628117 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
66628144 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
66628171 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66628186 GACTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:66628124 original size:82 final size:81
Alignment explanation
Indices: 66628009--66628164 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
66627999 AAATTGTACA
* *
66628009 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66628073 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
66628090 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66628155 TGCGAGTTGA
65 TGCGAATTGA
66628165 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66628176 original size:82 final size:81
Alignment explanation
Indices: 66628005--66628185 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
66627995 GATTAAATTG
* *
66628005 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
66628070 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
66628086 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
66628150 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
66628168 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
66628186 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:66636150 original size:27 final size:26
Alignment explanation
Indices: 66636120--66636240 Score: 116
Period size: 27 Copynumber: 4.5 Consensus size: 26
66636110 AAATTGTACA
*
66636120 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GAATATGTT
* *
66636147 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGAATATGTT
* * *
66636174 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGA-TTGAATATGTT
* * *
66636201 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGAATATGTT
*
66636228 GCACTGAGTGTGC
1 GCACTAAGTGTGC
66636241 AGACTCAATA
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 77 0.96
28 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGAATATGTT
Found at i:66636232 original size:54 final size:55
Alignment explanation
Indices: 66636119--66636240 Score: 158
Period size: 54 Copynumber: 2.3 Consensus size: 55
66636109 TAAATTGTAC
* *
66636119 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTCGACTACGTAGCACTAAGTGTGCGAAATGAATATGAT
* * ** *
66636174 -GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTCGACTACGTAGCACTAAGTGTGCGAAATGAATATGAT
*
66636227 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
66636241 AGACTCAATA
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 2 0.03
54 56 0.97
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTCGACTACGTAGCACTAAGTGTGCGAAATGAATATGAT
Found at i:66642353 original size:42 final size:43
Alignment explanation
Indices: 66642307--66642395 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
66642297 ACCACGTTTA
* * *
66642307 GGACATCGGCATCG-TATTTGATTTCATGTAAGACCCTATCTG
1 GGACATCGACATCGATATTTGATTACATGTAAGACCATATCTG
* * *
66642349 GGACATTGACATCGATATTTGATTACATTTAAGACCATGTCTG
1 GGACATCGACATCGATATTTGATTACATGTAAGACCATATCTG
66642392 GGAC
1 GGAC
66642396 GCTGGCATTG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 12 0.30
43 28 0.70
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (43 bp):
GGACATCGACATCGATATTTGATTACATGTAAGACCATATCTG
Found at i:66644640 original size:37 final size:37
Alignment explanation
Indices: 66644590--66644663 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
66644580 GAAAAGTGTA
66644590 AGGCTAGGCTTGGGTAAGATAAAAAGTGCATGTGTTT
1 AGGCTAGGCTTGGGTAAGATAAAAAGTGCATGTGTTT
66644627 AGGCTAGGCTTGGGTAAGATAAAAAGTGCATGTGTTT
1 AGGCTAGGCTTGGGTAAGATAAAAAGTGCATGTGTTT
66644664 CATTATACGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (37 bp):
AGGCTAGGCTTGGGTAAGATAAAAAGTGCATGTGTTT
Found at i:66652866 original size:27 final size:28
Alignment explanation
Indices: 66652836--66652893 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
66652826 AAATCTTACA
* *
66652836 TTCCACACATAGGGGTA-TTTTAGTCAT
1 TTCCACACATAGGGGCATTTTTAGTAAT
* *
66652863 TTCCACCCTTAGGGGCATTTTTAGTAAT
1 TTCCACACATAGGGGCATTTTTAGTAAT
66652891 TTC
1 TTC
66652894 ACTTTATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (28 bp):
TTCCACACATAGGGGCATTTTTAGTAAT
Found at i:66655414 original size:27 final size:26
Alignment explanation
Indices: 66655376--66655488 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
66655366 GGAGGAAGCA
66655376 TTCTGGTGGCTATGCCACAAGTATCTG
1 TTCTGGTGGCTATGCCACAA-TATCTG
66655403 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTATGCCAC-AATATCTG
** *
66655430 TTCTTTTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTG
* * * *
66655456 TATCTGGTGACTCTGTCACATTATCTG
1 T-TCTGGTGGCTATGCCACAATATCTG
66655483 TTCTGG
1 TTCTGG
66655489 CAGCTCTACT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 14 0.18
27 60 0.79
28 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:66655495 original size:53 final size:54
Alignment explanation
Indices: 66655388--66655495 Score: 121
Period size: 53 Copynumber: 2.0 Consensus size: 54
66655378 CTGGTGGCTA
* ****
66655388 TGCCACAAGTATCTGTTCTGGTGGCTATGCCACAAATATCTGTTCTTTTGGCTC
1 TGCCACAAGTATCTGTTCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCTC
* * *
66655442 TGCCACAA-TATCTGTATCTGGTGACTCTGTCAC-ATTATCTGTTCTGGCAGCTC
1 TGCCACAAGTATCTGT-TCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCTC
66655495 T
1 T
66655496 ACTACAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
53 23 0.51
54 22 0.49
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (54 bp):
TGCCACAAGTATCTGTTCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCTC
Found at i:66658781 original size:63 final size:64
Alignment explanation
Indices: 66658703--66658829 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
66658693 TTTCAACACA
66658703 AATTCTCTTATCATA-TTTTTTTATTTTATTTTATCAACTTTCAATCCTTTTGATCCATCTTTC
1 AATTCTCTTATCATATTTTTTTTATTTTATTTTATCAACTTTCAATCCTTTTGATCCATCTTTC
66658766 AATTCTCTTATCATATTTTTTTTATTTTATTTTATCAACTTTCAATCCTTTTGATCCATCTTTC
1 AATTCTCTTATCATATTTTTTTTATTTTATTTTATCAACTTTCAATCCTTTTGATCCATCTTTC
66658830 TTTTCTTCGC
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
63 15 0.24
64 48 0.76
ACGTcount: A:0.22, C:0.19, G:0.02, T:0.57
Consensus pattern (64 bp):
AATTCTCTTATCATATTTTTTTTATTTTATTTTATCAACTTTCAATCCTTTTGATCCATCTTTC
Found at i:66659774 original size:27 final size:27
Alignment explanation
Indices: 66659731--66659870 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
66659721 TGGAGGAAGC
*
66659731 GTTCTGGT-GCTATGCCACAAATATTT
1 GTTCTGGTGGCTATGCCACAAATATCT
66659757 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
66659784 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
66659811 GTTCTGGTGGCTCTGCCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * * * *
66659837 GTATCTGTTGACTCTGTCAC-ATTATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
66659864 GTTCTGG
1 GTTCTGG
66659871 CAGCTCTGCT
Statistics
Matches: 105, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
26 21 0.20
27 84 0.80
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:66659865 original size:80 final size:80
Alignment explanation
Indices: 66659731--66659886 Score: 190
Period size: 80 Copynumber: 1.9 Consensus size: 80
66659721 TGGAGGAAGC
* * **
66659731 GTTCTGGTGCTATGCCACAAATATTTGTTCTGGTGGCTATGCCACAAATATCTGTTCTGGTGGCT
1 GTTCTGGTGCTATGCCACAAATATCTGTTCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCT
66659796 CTGCCACAAATATCT
66 CTGCCACAAATATCT
* * * * *
66659811 GTTCTGGTGGCTCTGCCAC-AATATCTGTATCTGTTGACTCTGTCAC-ATTATCTGTTCTGGCAG
1 GTTCTGGT-GCTATGCCACAAATATCTGT-TCTGGTGACTATGCCACAAATATCTGTTCTGGCAG
*
66659874 CTCTGCTACAAAT
64 CTCTGCCACAAAT
66659887 TCGATGGTGT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 42 0.66
81 22 0.34
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (80 bp):
GTTCTGGTGCTATGCCACAAATATCTGTTCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCT
CTGCCACAAATATCT
Found at i:66660848 original size:29 final size:28
Alignment explanation
Indices: 66660806--66660891 Score: 102
Period size: 28 Copynumber: 3.0 Consensus size: 28
66660796 CAGAATCATA
*
66660806 CTCATTCATTTGGCCCCTTTAGGCCCAAT
1 CTCATTCATATGGCCCC-TTAGGCCCAAT
*
66660835 CTCATTCATATGGCCCAC-TGGGCCCAAT
1 CTCATTCATATGGCCC-CTTAGGCCCAAT
* * *
66660863 CACATTCATATGGCCCGTCAGGCCCAAT
1 CTCATTCATATGGCCCCTTAGGCCCAAT
66660891 C
1 C
66660892 ATACTCATAG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
28 33 0.67
29 15 0.31
30 1 0.02
ACGTcount: A:0.21, C:0.36, G:0.16, T:0.27
Consensus pattern (28 bp):
CTCATTCATATGGCCCCTTAGGCCCAAT
Found at i:66669092 original size:68 final size:67
Alignment explanation
Indices: 66669020--66669169 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
66669010 CATCATGTGT
* * * *
66669020 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
66669082 ATGTAG
62 ATGTAG
** * *
66669088 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
66669153 AG
66 AG
66669155 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
66669170 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:66669125 original size:64 final size:64
Alignment explanation
Indices: 66669044--66669226 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 64
66669034 AGACATTATG
* *
66669044 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
66669108 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
66669173 AA
63 AA
* * * *
66669175 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAG
66669227 ACGAACTATA
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:66671572 original size:29 final size:29
Alignment explanation
Indices: 66671487--66671592 Score: 144
Period size: 29 Copynumber: 3.7 Consensus size: 29
66671477 TACATACATG
* *
66671487 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* *
66671515 CAAATGGCCCATT-GGCCCAGTTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* *
66671543 CTTATGGCCCATTAGGCCCAATTCACATT
1 CATATGGCCCATTAGGCCCAATTCATATT
66671572 CATATGGCCCATTAGGCCCAA
1 CATATGGCCCATTAGGCCCAA
66671593 ATATATTATA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 6 0.09
28 28 0.42
29 33 0.49
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:66671840 original size:16 final size:16
Alignment explanation
Indices: 66671815--66671850 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
66671805 GTAGCCCAAC
*
66671815 TTTCGGCTTTTTAGCA
1 TTTCGACTTTTTAGCA
*
66671831 TTTCGACTTTTTAGCT
1 TTTCGACTTTTTAGCA
66671847 TTTC
1 TTTC
66671851 AGCATTTCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.19, G:0.14, T:0.56
Consensus pattern (16 bp):
TTTCGACTTTTTAGCA
Found at i:66671848 original size:24 final size:24
Alignment explanation
Indices: 66671820--66671865 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
66671810 CCAACTTTCG
*
66671820 GCTTTTTAGCATTTCGACTTTTTA
1 GCTTTTCAGCATTTCGACTTTTTA
*
66671844 GCTTTTCAGCATTTCGGCTTTT
1 GCTTTTCAGCATTTCGACTTTT
66671866 ACCGATTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.13, C:0.20, G:0.15, T:0.52
Consensus pattern (24 bp):
GCTTTTCAGCATTTCGACTTTTTA
Found at i:66673110 original size:16 final size:16
Alignment explanation
Indices: 66673089--66673119 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
66673079 AAAATTCAAG
66673089 ATTTCAGGATTTTTGA
1 ATTTCAGGATTTTTGA
66673105 ATTTCAGGATTTTTG
1 ATTTCAGGATTTTTG
66673120 GGGCATTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.19, T:0.52
Consensus pattern (16 bp):
ATTTCAGGATTTTTGA
Found at i:66677876 original size:40 final size:40
Alignment explanation
Indices: 66677820--66678060 Score: 353
Period size: 40 Copynumber: 6.0 Consensus size: 40
66677810 CGGGATTGAA
* * * *
66677820 CCGGATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
66677860 CCGGATATAGTAACTCGCACAAATGCCTTCGGGAATTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
66677900 CCGGATATAGTATCTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
66677940 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
66677980 CCGGATATAGTAACTCGCACAAATGCCTT-GGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
66678019 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
66678059 CC
1 CC
66678061 AGTTATCGTC
Statistics
Matches: 185, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 35 0.19
40 149 0.81
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:66684195 original size:27 final size:27
Alignment explanation
Indices: 66684165--66684342 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
66684155 ATATCGAGTC
* *
66684165 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
66684192 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
66684219 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** * *
66684247 CGCACACTTAGTGCCGCATGGTAAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
66684274 TGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
66684301 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
66684328 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66684343 GTACAATTTC
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66685193 original size:20 final size:21
Alignment explanation
Indices: 66685155--66685194 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
66685145 AAATTTTATC
*
66685155 TTATAATCATTTTTGTAAAAT
1 TTATAATCATTTTTCTAAAAT
*
66685176 TTATAATGA-TTTTCTAAAA
1 TTATAATCATTTTTCTAAAA
66685195 ACAGAATAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (21 bp):
TTATAATCATTTTTCTAAAAT
Found at i:66699831 original size:43 final size:43
Alignment explanation
Indices: 66699736--66699856 Score: 190
Period size: 43 Copynumber: 2.8 Consensus size: 43
66699726 AGCTCGTACA
* * *
66699736 ATGCCAACGTCCCAGACATGGTCTTACATGTAAT-AACTATGG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAACTATCG
66699778 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAACTATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAACTATCG
* *
66699821 ATGCCAACGTCCCAAACGTGGTCTTACACGAAATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCA
66699857 CATATTGGAG
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
42 32 0.44
43 41 0.56
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAACTATCG
Found at i:66715949 original size:40 final size:40
Alignment explanation
Indices: 66715878--66716045 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
66715868 CGGGGTTTAG
** * *
66715878 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
66715917 CCGGATATGGTCACTAGCATAAATTCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * **
66715957 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
66715997 CCGGATGTAGTCGCATAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAAC
*
66716038 CTGGATAT
1 CCGGATAT
66716046 CATTCGAGTA
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 15 0.14
40 61 0.59
41 28 0.27
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:66720709 original size:37 final size:37
Alignment explanation
Indices: 66720656--66720806 Score: 259
Period size: 37 Copynumber: 4.1 Consensus size: 37
66720646 CGAATAGTCC
* *
66720656 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
66720693 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
66720730 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
66720767 CCACACGTAGTCATCGGGTCTTACCCGGA-ATATATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATA-ATCT
66720804 CCA
1 CCA
66720807 AGTTTCATGT
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
36 3 0.03
37 106 0.97
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:66720994 original size:48 final size:48
Alignment explanation
Indices: 66720936--66721515 Score: 872
Period size: 48 Copynumber: 12.0 Consensus size: 48
66720926 ATATACACAC
* * *
66720936 ATCTCCTACATATTTCACATTAGCCATTCGACTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
66720984 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
66721032 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
66721080 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
66721128 ATCTCATATATATTTCACATTAGCCATTCGGATTTACCACATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* **
66721178 ATCTCATACATATTTGATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
66721226 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
66721274 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
66721322 ATCTCATACATATTTCATATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
66721370 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
66721418 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* ** * *
66721466 ATCTCATACATATTTCACACTAGAAATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
66721514 AT
1 AT
66721516 ATTTATCTTG
Statistics
Matches: 486, Mismatches: 44, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
48 443 0.91
50 43 0.09
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:66726178 original size:13 final size:13
Alignment explanation
Indices: 66726160--66726184 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66726150 GAATTAGTAT
66726160 GTGTGAAAATTTC
1 GTGTGAAAATTTC
66726173 GTGTGAAAATTT
1 GTGTGAAAATTT
66726185 AATTTGATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:66727371 original size:42 final size:42
Alignment explanation
Indices: 66727264--66727446 Score: 217
Period size: 42 Copynumber: 4.3 Consensus size: 42
66727254 ATATGTGTTA
**
66727264 TCATGTAAGACCAC-ATCTGGGATGTTGGCATCG-ACTTATGATT
1 TCATGTAAGACC-CTATCTGGGACATTGGCATCGTA-TT-TGATT
* * * *
66727307 TACGTGTAAGACCATGTTTGGGACATTGGCATCGTATTTGATT
1 T-CATGTAAGACCCTATCTGGGACATTGGCATCGTATTTGATT
66727350 TCATGTAAGACCCTATCTGGGACATTGGCATCGTATTTGATT
1 TCATGTAAGACCCTATCTGGGACATTGGCATCGTATTTGATT
* * *
66727392 TCGTGTAAGACCCTATATGGGACAATGGCATCGATATTTGATT
1 TCATGTAAGACCCTATCTGGGACATTGGCATCG-TATTTGATT
*
66727435 ACATGTAAGACC
1 TCATGTAAGACC
66727447 ACGTCTGGGA
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
42 67 0.55
43 26 0.21
44 27 0.22
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (42 bp):
TCATGTAAGACCCTATCTGGGACATTGGCATCGTATTTGATT
Found at i:66727454 original size:85 final size:86
Alignment explanation
Indices: 66727265--66727470 Score: 276
Period size: 85 Copynumber: 2.4 Consensus size: 86
66727255 TATGTGTTAT
* *
66727265 CATGTAAGACCACATCTGGGATGTTGGCATCG-ACTTATGATTTACGTGTAAGACCATGTTTGGG
1 CATGTAAGACCACATCTGGGATGTTGGCATCGTA-TTATGATTTACGTGTAAGACCATATATGGG
* *
66727329 ACATTGGCATCGTATTTGATTT
65 ACAATGGCATCGTATTTGATTA
** *
66727351 CATGTAAGACC-CTATCTGGGACATTGGCATCGTATT-TGATTT-CGTGTAAGACCCTATATGGG
1 CATGTAAGACCAC-ATCTGGGATGTTGGCATCGTATTATGATTTACGTGTAAGACCATATATGGG
66727413 ACAATGGCATCGATATTTGATTA
65 ACAATGGCATCG-TATTTGATTA
* *
66727436 CATGTAAGACCACGTCTGGGATGTTGGCATTGTAT
1 CATGTAAGACCACATCTGGGATGTTGGCATCGTAT
66727471 GAGCTTTTTG
Statistics
Matches: 105, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
84 28 0.27
85 45 0.43
86 31 0.30
87 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (86 bp):
CATGTAAGACCACATCTGGGATGTTGGCATCGTATTATGATTTACGTGTAAGACCATATATGGGA
CAATGGCATCGTATTTGATTA
Found at i:66727464 original size:43 final size:42
Alignment explanation
Indices: 66727265--66727470 Score: 202
Period size: 42 Copynumber: 4.8 Consensus size: 42
66727255 TATGTGTTAT
**
66727265 CATGTAAGACCACATCTGGGATGTTGGCATCG-ACTTATGATTTA
1 CATGTAAGACCACATCTGGGACATTGGCATCGTA-TT-TGA-TTA
* ** * *
66727309 CGTGTAAGACCATGTTTGGGACATTGGCATCGTATTTGATTT
1 CATGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTA
*
66727351 CATGTAAGACC-CTATCTGGGACATTGGCATCGTATTTGATTT
1 CATGTAAGACCAC-ATCTGGGACATTGGCATCGTATTTGATTA
* * *
66727393 CGTGTAAGACC-CTATATGGGACAATGGCATCGATATTTGATTA
1 CATGTAAGACCAC-ATCTGGGACATTGGCATCG-TATTTGATTA
* ** *
66727436 CATGTAAGACCACGTCTGGGATGTTGGCATTGTAT
1 CATGTAAGACCACATCTGGGACATTGGCATCGTAT
66727471 GAGCTTTTTG
Statistics
Matches: 136, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
42 71 0.52
43 35 0.26
44 29 0.21
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
CATGTAAGACCACATCTGGGACATTGGCATCGTATTTGATTA
Found at i:66731880 original size:25 final size:25
Alignment explanation
Indices: 66731837--66731913 Score: 68
Period size: 27 Copynumber: 3.0 Consensus size: 25
66731827 GGATACACCT
*
66731837 TGGCTC-TTATAAGCATTCCGAATAAA
1 TGGCTCTTTATGAGC-TTCCG-ATAAA
* *
66731863 -GGCTCTTTGTGAGCTTCCCGTTAAA
1 TGGCTCTTTATGAGCTT-CCGATAAA
66731888 TTGGCTCTTTATGAGCTTCCCGATAA
1 -TGGCTCTTTATGAGCTT-CCGATAA
66731914 TGCTCACTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
25 11 0.26
26 9 0.21
27 22 0.52
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.35
Consensus pattern (25 bp):
TGGCTCTTTATGAGCTTCCGATAAA
Found at i:66731958 original size:24 final size:23
Alignment explanation
Indices: 66731903--66731959 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
66731893 TCTTTATGAG
*
66731903 CTTCCCGATAATGCTCACTTGAA
1 CTTCCCGATAATGCTCACTGGAA
*
66731926 CTTCCCGATAATGGCT-ATCTGGAT
1 CTTCCCGATAAT-GCTCA-CTGGAA
66731950 CTTCCCGATA
1 CTTCCCGATA
66731960 TGGTTCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 13 0.43
24 17 0.57
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.32
Consensus pattern (23 bp):
CTTCCCGATAATGCTCACTGGAA
Found at i:66732001 original size:24 final size:24
Alignment explanation
Indices: 66731950--66732018 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
66731940 CTATCTGGAT
* *
66731950 CTTCCCGATATGGTTCTTT-TGAA
1 CTTCCCGAAAAGGTTCTTTGTGAA
*
66731973 CTTCCCGAAAAGGTTTTTTGTGAA
1 CTTCCCGAAAAGGTTCTTTGTGAA
*
66731997 CTTCCTGAAAAGGTTCTTTGTG
1 CTTCCCGAAAAGGTTCTTTGTG
66732019 CCCTAATTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 16 0.40
24 24 0.60
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
CTTCCCGAAAAGGTTCTTTGTGAA
Found at i:66741165 original size:28 final size:28
Alignment explanation
Indices: 66741133--66741188 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
66741123 GAAGAGACAA
66741133 CCTACTAACATTGGAGGAGAAAGTTTGC
1 CCTACTAACATTGGAGGAGAAAGTTTGC
66741161 CCTACTAACATTGGAGGAGAAAGTTTGC
1 CCTACTAACATTGGAGGAGAAAGTTTGC
66741189 ATTAAGAAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (28 bp):
CCTACTAACATTGGAGGAGAAAGTTTGC
Found at i:66758402 original size:20 final size:21
Alignment explanation
Indices: 66758368--66758416 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
66758358 TTATAATATC
*
66758368 ATAAATAATATGAATAAAAAA
1 ATAAATAATAGGAATAAAAAA
*
66758389 ATAAA-AATAGGAATAAAAGA
1 ATAAATAATAGGAATAAAAAA
*
66758409 AGAAATAA
1 ATAAATAA
66758417 AAAATAAGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.18
Consensus pattern (21 bp):
ATAAATAATAGGAATAAAAAA
Found at i:66759168 original size:24 final size:25
Alignment explanation
Indices: 66759141--66759252 Score: 110
Period size: 24 Copynumber: 4.6 Consensus size: 25
66759131 AAGGTTATGC
66759141 GGCACTATGTGTGC-AAAAACTAAT
1 GGCACTATGTGTGCGAAAAACTAAT
* *
66759165 GGCACTATGTGTGCG--AGATTACAT
1 GGCACTATGTGTGCGAAAAACTA-AT
*
66759189 GGCACTATGTGTGCGAGAAAAC--GT
1 GGCACTATGTGTGCGA-AAAACTAAT
* *
66759213 GGCACTATGTGTGCGAATAAGTAA-
1 GGCACTATGTGTGCGAAAAACTAAT
66759237 GAGCACTATGTGTGCG
1 G-GCACTATGTGTGCG
66759253 GACTTACAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
23 7 0.10
24 49 0.68
25 14 0.19
27 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (25 bp):
GGCACTATGTGTGCGAAAAACTAAT
Found at i:66759227 original size:48 final size:47
Alignment explanation
Indices: 66759118--66759228 Score: 134
Period size: 48 Copynumber: 2.3 Consensus size: 47
66759108 AGAAATTTCA
* * **
66759118 GCACTATGTGTGCAAGGTTATGCGGCACTATGTGTGCAAAAACTAATG
1 GCACTATGTGTGCGAGATTACACGGCACTATGTGTGCAAAAAC-AATG
* *
66759166 GCACTATGTGTGCGAGATTACATGGCACTATGTGTGCGAGAAAAC-GTG
1 GCACTATGTGTGCGAGATTACACGGCACTATGTGTGC-A-AAAACAATG
66759214 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
66759229 ATAAGTAAGA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
48 49 0.89
49 1 0.02
50 5 0.09
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
GCACTATGTGTGCGAGATTACACGGCACTATGTGTGCAAAAACAATG
Found at i:66763731 original size:27 final size:26
Alignment explanation
Indices: 66763694--66764096 Score: 306
Period size: 27 Copynumber: 15.0 Consensus size: 26
66763684 AAACATACAT
* * *
66763694 CACATAGGGGCAAAACAATCATTTTGC
1 CACATAAGGGCAAAAC-GTCATTTTAC
* * *
66763721 CACATAAGGGCGAAATCATCATTTTAT
1 CACATAAGGGC-AAAACGTCATTTTAC
* *
66763748 CACATAAGGG-AAAACTGTCAATTTAA
1 CACATAAGGGCAAAAC-GTCATTTTAC
* * *
66763774 CGCATAAGGGCAAAATAGTCATTTTGC
1 CACATAAGGGCAAAA-CGTCATTTTAC
* * *
66763801 CACATAAGGGAAAAACTATCATTTTAT
1 CACATAAGGGCAAAAC-GTCATTTTAC
* * * *
66763828 CATATAAGGGCAAAATTGTCAATTTAT
1 CACATAAGGGCAAAA-CGTCATTTTAC
*
66763855 CACATAAGGGCAAAATCGTCATTTTAA
1 CACATAAGGGCAAAA-CGTCATTTTAC
* * *
66763882 CGCATAAGGGCAAAA-GTTATTTTGC
1 CACATAAGGGCAAAACGTCATTTTAC
* *
66763907 CACATAAGGGCAAAATCGTCAATTTAA
1 CACATAAGGGCAAAA-CGTCATTTTAC
** * * *
66763934 CGTATAAGGGAAAAATAGTCATTTTGC
1 CACATAAGGGCAAAA-CGTCATTTTAC
* *
66763961 CACATAAGGGCAAAATCGTCAATTTAA
1 CACATAAGGGCAAAA-CGTCATTTTAC
** *
66763988 CGTATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAA-CGTCATTTTAC
* * * *
66764015 CATATAAGGGAAAAACTGTCAATTTAT
1 CACATAAGGGCAAAAC-GTCATTTTAC
*
66764042 CACATAAGGGCAAAATCGTCATTTTGC
1 CACATAAGGGCAAAA-CGTCATTTTAC
*
66764069 CATATAAGGGCAAAACTGTCATTTTAC
1 CACATAAGGGCAAAAC-GTCATTTTAC
66764096 C
1 C
66764097 CTACAGGGGT
Statistics
Matches: 297, Mismatches: 68, Indels: 22
0.77 0.18 0.06
Matches are distributed among these distances:
25 25 0.08
26 17 0.06
27 250 0.84
28 5 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (26 bp):
CACATAAGGGCAAAACGTCATTTTAC
Found at i:66763840 original size:54 final size:54
Alignment explanation
Indices: 66763723--66764094 Score: 425
Period size: 54 Copynumber: 6.9 Consensus size: 54
66763713 CATTTTGCCA
* **
66763723 CATAAGGGCGAAATCA-TCATTTTATCACATAAGGG-AAAACTGTCAATTTAACG
1 CATAAGGGCAAAAT-AGTCATTTTGCCACATAAGGGCAAAACTGTCAATTTAACG
* * * * *
66763776 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGAAAAACTATCATTTTATCA
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCAATTTAACG
* * * ** *
66763830 TATAAGGGCAAAATTGTCAATTTATCACATAAGGGCAAAA-TCGTCATTTTAACG
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACT-GTCAATTTAACG
*
66763884 CATAAGGGC-AAA-AGTTATTTTGCCACATAAGGGCAAAA-TCGTCAATTTAACG
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACT-GTCAATTTAACG
* *
66763936 TATAAGGGAAAAATAGTCATTTTGCCACATAAGGGCAAAA-TCGTCAATTTAACG
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACT-GTCAATTTAACG
* * * * * *
66763990 TATAAGGGCAAAATAGTCATTTTACCATATAAGGGAAAAACTGTCAATTTATCA
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCAATTTAACG
* * *
66764044 CATAAGGGCAAAATCGTCATTTTGCCATATAAGGGCAAAACTGTCATTTTA
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCAATTTA
66764095 CCCTACAGGG
Statistics
Matches: 276, Mismatches: 37, Indels: 11
0.85 0.11 0.03
Matches are distributed among these distances:
52 42 0.15
53 37 0.13
54 196 0.71
55 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (54 bp):
CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCAATTTAACG
Found at i:66763889 original size:81 final size:81
Alignment explanation
Indices: 66763694--66764094 Score: 391
Period size: 81 Copynumber: 5.0 Consensus size: 81
66763684 AAACATACAT
* * * * * * *
66763694 CACATAGGGGCAAAACAATCATTTTGCCACATAAGGGCGAAATCATCATTTTATCACATAAGGG-
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATCATCATTTTACCATATAAGGGC
*
66763758 AAAACTGTCAATTTAA
66 AAAATTGTCAATTTAA
* * * *
66763774 CGCATAAGGGCAAAATAGTCATTTTGCCACATAAGGG-AAAAACTATCATTTTATCATATAAGGG
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATC-ATCATTTTACCATATAAGGG
*
66763838 CAAAATTGTCAATTTAT
65 CAAAATTGTCAATTTAA
* * * * *
66763855 CACATAAGGGCAAAATCGTCATTTTAACGCATAAGGGCAAAAGT--T-ATTTTGCCACATAAGGG
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAA-TCATCATTTTACCATATAAGGG
*
66763917 CAAAATCGTCAATTTAA
65 CAAAATTGTCAATTTAA
** * * * * * *
66763934 CGTATAAGGGAAAAATAGTCATTTTGCCACATAAGGGCAAAATCGTCAATTTAACGTATAAGGGC
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATCATCATTTTACCATATAAGGGC
* * *
66763999 AAAATAGTCATTTTAC
66 AAAATTGTCAATTTAA
* * * * * *
66764015 CATATAAGGGAAAAACT-GTCAATTTATCACATAAGGGCAAAATCGTCATTTTGCCATATAAGGG
1 CACATAAGGGCAAAA-TAGTCATTTTACCACATAAGGGCAAAATCATCATTTTACCATATAAGGG
* *
66764079 CAAAACTGTCATTTTA
65 CAAAATTGTCAATTTA
66764095 CCCTACAGGG
Statistics
Matches: 268, Mismatches: 45, Indels: 15
0.82 0.14 0.05
Matches are distributed among these distances:
78 1 0.00
79 68 0.25
80 54 0.20
81 140 0.52
82 5 0.02
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.27
Consensus pattern (81 bp):
CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGCAAAATCATCATTTTACCATATAAGGGC
AAAATTGTCAATTTAA
Done.