Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 205 of 316
Found at i:66770041 original size:40 final size:40
Alignment explanation
Indices: 66769986--66770127 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
66769976 TATTCGAATG
66769986 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66770026 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66770066 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
66770106 ATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
66770128 TACTTGGGTT
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 13 0.14
40 81 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:66773349 original size:14 final size:15
Alignment explanation
Indices: 66773330--66773359 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
66773320 GTTTATTATA
66773330 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
66773344 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
66773359 T
1 T
66773360 CTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:66775424 original size:17 final size:18
Alignment explanation
Indices: 66775386--66775424 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
66775376 AATAGAAAGT
66775386 AAAATGAAAGAAGAGCCA
1 AAAATGAAAGAAGAGCCA
*
66775404 AAAATGAATTGAAGAG-CA
1 AAAATGAA-AGAAGAGCCA
66775422 AAA
1 AAA
66775425 CATCAAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.62, C:0.08, G:0.21, T:0.10
Consensus pattern (18 bp):
AAAATGAAAGAAGAGCCA
Found at i:66777205 original size:17 final size:17
Alignment explanation
Indices: 66777176--66777209 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
66777166 GACCTCAAAT
66777176 TTTGAACTCTATAGCTA
1 TTTGAACTCTATAGCTA
66777193 TTTGATACT-TATAGCTA
1 TTTGA-ACTCTATAGCTA
66777210 CTAGAACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (17 bp):
TTTGAACTCTATAGCTA
Found at i:66780971 original size:21 final size:21
Alignment explanation
Indices: 66780945--66780997 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
66780935 CTACTTTTTC
* *
66780945 TCAAATTAATCTCGATTTGTT
1 TCAAATTAATCCCGAATTGTT
*
66780966 TCAAATTAGTCCCGAATTGTT
1 TCAAATTAATCCCGAATTGTT
66780987 TCTAAATTAAT
1 TC-AAATTAAT
66780998 TTTAAGCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 20 0.74
22 7 0.26
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.43
Consensus pattern (21 bp):
TCAAATTAATCCCGAATTGTT
Found at i:66784256 original size:17 final size:17
Alignment explanation
Indices: 66784234--66784278 Score: 55
Period size: 12 Copynumber: 2.9 Consensus size: 17
66784224 TCTAGCCTCT
66784234 CCTTGTGCAGGAGTATC
1 CCTTGTGCAGGAGTATC
66784251 CCTTGTGC-----TATC
1 CCTTGTGCAGGAGTATC
66784263 CCTTGTGCAGGAGTAT
1 CCTTGTGCAGGAGTAT
66784279 GCGCTACACT
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
12 12 0.52
17 11 0.48
ACGTcount: A:0.16, C:0.24, G:0.27, T:0.33
Consensus pattern (17 bp):
CCTTGTGCAGGAGTATC
Found at i:66793301 original size:31 final size:31
Alignment explanation
Indices: 66793266--66793329 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
66793256 CCTTTTCATA
66793266 TTTCATATTTCATAACACTGGGCCAAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
** * *
66793297 TTTCATATTTCATATTACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCAAAGCCT
66793328 TT
1 TT
66793330 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCAAAGCCT
Found at i:66793594 original size:25 final size:24
Alignment explanation
Indices: 66793543--66793620 Score: 113
Period size: 25 Copynumber: 3.2 Consensus size: 24
66793533 GGCCTAGTTT
*
66793543 CTTTTAAT-AACTAGGGCAAAGCC
1 CTTTTAATAAACTGGGGCAAAGCC
*
66793566 CTTTTGATAAACTGGGGCAAAAGCC
1 CTTTTAATAAACTGGGGC-AAAGCC
66793591 CTTTTAATAAACTGGGGCAAAAGCC
1 CTTTTAATAAACTGGGGC-AAAGCC
66793616 CTTTT
1 CTTTT
66793621 TCGGTAAACT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
23 7 0.14
24 8 0.16
25 35 0.70
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (24 bp):
CTTTTAATAAACTGGGGCAAAGCC
Found at i:66793747 original size:11 final size:11
Alignment explanation
Indices: 66793694--66793749 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
66793684 TTATGAATAC
66793694 ATCATGTGCAT
1 ATCATGTGCAT
*
66793705 ATCA--TACAT
1 ATCATGTGCAT
*
66793714 ACCATGTGCAT
1 ATCATGTGCAT
*
66793725 ATCA--TACAT
1 ATCATGTGCAT
66793734 ATCATGTGCAT
1 ATCATGTGCAT
66793745 ATCAT
1 ATCAT
66793750 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:66793757 original size:20 final size:20
Alignment explanation
Indices: 66793694--66793760 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
66793684 TTATGAATAC
66793694 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66793714 ACCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
66793734 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
66793754 ATCATGT
1 ATCATGT
66793761 ATATCAAAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:66799362 original size:40 final size:40
Alignment explanation
Indices: 66799318--66799502 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
66799308 GCTACTCGTT
*
66799318 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-GAGTAACTCGCA
* *
66799358 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTGAGTAACTCGCA
*
66799398 CCAATGCCTTCGGG-CTTAGCCCGGAATT-AGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTGAGTAACTCGCA
* * *
66799437 CAAATGCCTTC-GGATCTTAGTCCGGATATG-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TGAGTAAC-TCGCA
66799478 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66799503 CATCATTCGA
Statistics
Matches: 127, Mismatches: 10, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTGAGTAACTCGCA
Found at i:66799418 original size:79 final size:79
Alignment explanation
Indices: 66799320--66799502 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 79
66799310 TACTCGTTCA
*
66799320 AATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGATT--AGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
66799383 ATTTAGTAAC-TCGCACC
63 ATATAGTAACTTAGCA-C
**
66799400 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
66799464 ATGGTCACTTAGCAC
65 ATAGTAACTTAGCAC
*
66799479 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
66799503 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 26 0.29
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCAC
Found at i:66817715 original size:146 final size:146
Alignment explanation
Indices: 66817451--66817738 Score: 558
Period size: 146 Copynumber: 2.0 Consensus size: 146
66817441 TATATGGACT
66817451 AAAACGCCCCTAGCTCATATTATTTCCCATCTAGAGTCGATGTCACGACACATCAGGACATGTGT
1 AAAACGCCCCTAGCTCATATTATTTCCCATCTAGAGTCGATGTCACGACACATCAGGACATGTGT
*
66817516 CGCGACAAAGAAGTAAGTATACTTTTCTTTGGGATGTCTTCAAGGGTATGTCACAACACACTTAG
66 CGCGACAAAGAAGTAAGTATACATTTCTTTGGGATGTCTTCAAGGGTATGTCACAACACACTTAG
66817581 GCTGTGTCATGCAACC
131 GCTGTGTCATGCAACC
66817597 AAAACGCCCCTAGCTCATATTATTTCCCATCTAGAGTCGATGTCACGACACATCAGGACATGTGT
1 AAAACGCCCCTAGCTCATATTATTTCCCATCTAGAGTCGATGTCACGACACATCAGGACATGTGT
66817662 CGCGACAAAGAAGTAAGTATACATTTCTTTGGGATGTCTTCAAGGGTATGTCACAACACACTTAG
66 CGCGACAAAGAAGTAAGTATACATTTCTTTGGGATGTCTTCAAGGGTATGTCACAACACACTTAG
*
66817727 GTTGTGTCATGC
131 GCTGTGTCATGC
66817739 CATCGAAGGT
Statistics
Matches: 140, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 140 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (146 bp):
AAAACGCCCCTAGCTCATATTATTTCCCATCTAGAGTCGATGTCACGACACATCAGGACATGTGT
CGCGACAAAGAAGTAAGTATACATTTCTTTGGGATGTCTTCAAGGGTATGTCACAACACACTTAG
GCTGTGTCATGCAACC
Found at i:66829071 original size:27 final size:27
Alignment explanation
Indices: 66829041--66829218 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
66829031 ATATCGAGTC
* *
66829041 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
66829068 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
66829095 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
66829123 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
66829150 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
66829177 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
66829204 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66829219 GTACAATTTA
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66829180 original size:82 final size:81
Alignment explanation
Indices: 66829062--66829217 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66829052 TGCTATATAA
*
66829062 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
66829127 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
66829144 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
66829208 CACTTAGTGC
65 CACTTAGTGC
66829218 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:66830052 original size:440 final size:439
Alignment explanation
Indices: 66829215--66830093 Score: 1733
Period size: 438 Copynumber: 2.0 Consensus size: 439
66829205 GCACACTTAG
66829215 TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCACG
1 TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCACG
66829280 TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
66 TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
66829345 CACATACGTACATGCATATATATATATATATATGTATATTTATTCATTCCATTCAGCATCAATAC
131 CACATACGTACATGCA-ATATATATATATATATGTATATTTATTCATTCCATTCAGCATCAATAC
66829410 ATACACATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTA
195 ATACACATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTA
66829475 AGACGGTTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAAC
260 AGACGGTTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAAC
66829540 TCCTTGAGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAAT
325 TCCTTGAGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAAT
66829605 AATATATATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
390 AATATATATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
*
66829655 TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCTCG
1 TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCACG
66829720 TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
66 TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
66829785 CACATACGTACATGC-ATATATATATATATATGTATATTTATTCATTCCATTCAGCATCAATACA
131 CACATACGTACATGCAATATATATATATATATGTATATTTATTCATTCCATTCAGCATCAATACA
66829849 TACACATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTAA
196 TACACATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTAA
66829914 GACGGTTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAACT
261 GACGGTTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAACT
66829979 CCTTGAGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATA
326 CCTTGAGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATA
66830044 ATATATATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
391 ATATATATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
66830093 T
1 T
66830094 AATAGTCAAT
Statistics
Matches: 438, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
438 294 0.67
440 144 0.33
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (439 bp):
TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCACG
TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
CACATACGTACATGCAATATATATATATATATGTATATTTATTCATTCCATTCAGCATCAATACA
TACACATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTAA
GACGGTTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAACT
CCTTGAGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATA
ATATATATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
Found at i:66837692 original size:27 final size:27
Alignment explanation
Indices: 66837662--66837812 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
66837652 ATATCGAGTC
* *
66837662 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
66837689 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
66837716 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
66837744 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* *
66837771 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
66837798 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66837813 GTACAATTTA
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
27 83 0.76
28 26 0.24
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66837752 original size:55 final size:54
Alignment explanation
Indices: 66837662--66837812 Score: 187
Period size: 55 Copynumber: 2.8 Consensus size: 54
66837652 ATATCGAGTC
* * * *
66837662 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAAT
* ** ** *
66837716 CGCACACTTAGTGCCACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAAT
66837771 CGCACACTTAGTGCAACATAGTCGAA-TCGCACACTTAGTGCT
1 CGCACACTTAGTGCAACATAGTC-AACTCGCACACTTAGTGCT
66837813 GTACAATTTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 34 0.40
55 50 0.60
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (54 bp):
CGCACACTTAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAAT
Found at i:66838636 original size:434 final size:434
Alignment explanation
Indices: 66837809--66838679 Score: 1724
Period size: 436 Copynumber: 2.0 Consensus size: 434
66837799 GCACACTTAG
66837809 TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCACG
1 TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCACG
66837874 TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
66 TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
66837939 CACATACGTACATGCATATATATATATGTATATTTATTCATTCCATTCAGCATCAATACATACAC
131 CACATACGTACATGCATATATATATATGTATATTTATTCATTCCATTCAGCATCAATACATACAC
66838004 ATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTAAGACGG
196 ATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTAAGACGG
66838069 TTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAACTCCTTG
261 TTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAACTCCTTG
66838134 AGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATAATATA
326 AGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATAATATA
66838199 TATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
391 TATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
66838243 TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCACG
1 TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCACG
66838308 TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
66 TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
66838373 CACATACGTACATGCATATATATATATATGTATATTTATTCATTCCATTCAGCATCAATACATAC
131 CACATACGTACATGC--ATATATATATATGTATATTTATTCATTCCATTCAGCATCAATACATAC
66838438 ACATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTAAGAC
194 ACATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTAAGAC
66838503 GGTTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAACTCCT
259 GGTTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAACTCCT
66838568 TGAGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATAATA
324 TGAGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATAATA
66838633 TATATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
389 TATATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
66838679 T
1 T
66838680 AATAGTCAAT
Statistics
Matches: 435, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
434 145 0.33
436 290 0.67
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (434 bp):
TGCTGTACAATTTAATCCCGCGCACTTAGCGCCAATCTCATGGTCATAAATGGTTATCCCGCACG
TTTAGTGCCGAGATCAACAACTCAGTACATCTTACCTCTTTTCTTTCATTCAACAATTTCATCAT
CACATACGTACATGCATATATATATATGTATATTTATTCATTCCATTCAGCATCAATACATACAC
ATTATGACCATTTGAAATAATACCAACTACATGCTTAATGACTTACCTCGTGTTGGGTAAGACGG
TTCCAACTCGGCTACTCGATAACCTTTTCTTTGCCTTTGCTCGATTCACCTCCTTTAACTCCTTG
AGCCAAATCAATAATTTAAAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATAATATA
TATATTGATTTGACTTTCACACACATAGATTATAGTAAGCTTTA
Found at i:66849984 original size:27 final size:26
Alignment explanation
Indices: 66849940--66849991 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
66849930 CTCGCTGCAA
*
66849940 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
66849967 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
66849992 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:66852250 original size:21 final size:21
Alignment explanation
Indices: 66852224--66852267 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
66852214 TTTAAGGGTG
*
66852224 TGTCACAACATCCAATGGTTA
1 TGTCACAACATCCAACGGTTA
66852245 TGTCACAACATCCAACGGTTA
1 TGTCACAACATCCAACGGTTA
66852266 TG
1 TG
66852268 CCACTTTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (21 bp):
TGTCACAACATCCAACGGTTA
Found at i:66854031 original size:16 final size:17
Alignment explanation
Indices: 66854010--66854043 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
66854000 TTACTTCTGT
66854010 TCTCATT-GATTCCATC
1 TCTCATTCGATTCCATC
*
66854026 TCTCATTCGATTCGATC
1 TCTCATTCGATTCCATC
66854043 T
1 T
66854044 AGGCGTTGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.18, C:0.29, G:0.09, T:0.44
Consensus pattern (17 bp):
TCTCATTCGATTCCATC
Found at i:66858829 original size:43 final size:43
Alignment explanation
Indices: 66858777--66858890 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
66858767 GCTGGTGAAT
*
66858777 AATATTATCGGGCTTCAGGCCTAGCAGGCTATAATACCAGTGA
1 AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATACCAGTGA
* * *
66858820 GATAATATCGGGCTTC-GAGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCAG-GCCTAGCAGGCTATAATACCAGTGA
* * *
66858863 AATGATATCGGGCTTCAAGCCTAACAGG
1 AATAATATCGGGCTTCAGGCCTAGCAGG
66858891 TGAAATGCCG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.02
43 60 0.98
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (43 bp):
AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATACCAGTGA
Found at i:66861415 original size:99 final size:99
Alignment explanation
Indices: 66861229--66861406 Score: 260
Period size: 99 Copynumber: 1.8 Consensus size: 99
66861219 GGTAGAATGC
*
66861229 CGATGCCATGTCCCAAACATGGTCTTACCCTGACTATCATCATCGAGGCTGACGCCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCATCGAGGCTGACGCCATGTCCCAG
*
66861294 ACATGGTCTTACACTTGCTCTCACATAGCTATGT
66 ACATGGTCTTACACTGGCTCTCACATAGCTATGT
* * *
66861328 CGATGCCATGTCCCAGATATGGTCTTACACTGAC-A-CATC-TCGTA-GCTGATG-CATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCATCG-AGGCTGACGCCATGTCCCA
66861388 GACAT-GTCTTACACTGGCT
65 GACATGGTCTTACACTGGCT
66861407 TATGTCTCAA
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
94 13 0.18
95 14 0.19
96 9 0.12
97 5 0.07
98 1 0.01
99 31 0.42
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (99 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCATCGAGGCTGACGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCACATAGCTATGT
Found at i:66861432 original size:46 final size:45
Alignment explanation
Indices: 66861376--66861500 Score: 162
Period size: 46 Copynumber: 2.7 Consensus size: 45
66861366 CTCGTAGCTG
* *
66861376 ATGCATGTCCCAGACATGTCTTACACTGGCT-TATGTCTCAAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGCCTCAAGG-CA
* * *
66861422 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGCCTCAATGCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCGCCTCAAGGCA
66861467 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTC
66861501 ATAATAACCA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
45 4 0.06
46 51 0.73
47 15 0.21
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.27
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCGCCTCAAGGCA
Found at i:66863698 original size:18 final size:18
Alignment explanation
Indices: 66863675--66863712 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
66863665 AATATATATT
66863675 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
66863693 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
66863711 AA
1 AA
66863713 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:66863705 original size:13 final size:13
Alignment explanation
Indices: 66863689--66863713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66863679 CAAGTACCCA
66863689 ACCCAACCCAATT
1 ACCCAACCCAATT
66863702 ACCCAACCCAAT
1 ACCCAACCCAAT
66863714 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:66863779 original size:20 final size:20
Alignment explanation
Indices: 66863743--66863780 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
66863733 TTAATAAATA
**
66863743 AAAATAAAAATCTAAAACTT
1 AAAATAAAAATAAAAAACTT
66863763 AAAATAAAAATAAAAAAC
1 AAAATAAAAATAAAAAAC
66863781 ATATAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAATAAAAATAAAAAACTT
Found at i:66863812 original size:9 final size:9
Alignment explanation
Indices: 66863798--66863856 Score: 66
Period size: 9 Copynumber: 6.6 Consensus size: 9
66863788 TTTATACAAA
66863798 TAATTCGAT
1 TAATTCGAT
**
66863807 TAATTCGGG
1 TAATTCGAT
66863816 TAATTCGGA-
1 TAATTC-GAT
66863825 TAATTCGAT
1 TAATTCGAT
66863834 TAATTCGAT
1 TAATTCGAT
* *
66863843 TAACTCGGT
1 TAATTCGAT
66863852 TAATT
1 TAATT
66863857 TTATATTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
8 2 0.05
9 39 0.93
10 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.41
Consensus pattern (9 bp):
TAATTCGAT
Found at i:66863821 original size:18 final size:18
Alignment explanation
Indices: 66863798--66863856 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
66863788 TTTATACAAA
*
66863798 TAATTCGATTAATTCGGG
1 TAATTCGATTAATTCGGT
*
66863816 TAATTCGGA-TAATTCGAT
1 TAATTC-GATTAATTCGGT
*
66863834 TAATTCGATTAACTCGGT
1 TAATTCGATTAATTCGGT
66863852 TAATT
1 TAATT
66863857 TTATATTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
17 2 0.06
18 31 0.89
19 2 0.06
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.41
Consensus pattern (18 bp):
TAATTCGATTAATTCGGT
Found at i:66863850 original size:27 final size:27
Alignment explanation
Indices: 66863797--66863856 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
66863787 TTTTATACAA
* *
66863797 ATAATTCGATTAATTCGGGTAATTCGG
1 ATAATTCGATTAATTCGAGTAACTCGG
*
66863824 ATAATTCGATTAATTCGATTAACTCGG
1 ATAATTCGATTAATTCGAGTAACTCGG
*
66863851 TTAATT
1 ATAATT
66863857 TTATATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.40
Consensus pattern (27 bp):
ATAATTCGATTAATTCGAGTAACTCGG
Found at i:66866698 original size:40 final size:41
Alignment explanation
Indices: 66866643--66866723 Score: 128
Period size: 40 Copynumber: 2.0 Consensus size: 41
66866633 TACCCTTGTG
* * *
66866643 GACCATTTAAGGGCTATTTTCC-AAGCAATAGTCACTCATA
1 GACCATTTAAAGGCTATTTTCCAAACCAATAGTCACCCATA
66866683 GACCATTTAAAGGCTATTTTCCAAACCAATAGTCACCCATA
1 GACCATTTAAAGGCTATTTTCCAAACCAATAGTCACCCATA
66866724 CATTCAAACA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
40 21 0.57
41 16 0.43
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (41 bp):
GACCATTTAAAGGCTATTTTCCAAACCAATAGTCACCCATA
Found at i:66867798 original size:18 final size:18
Alignment explanation
Indices: 66867772--66867836 Score: 112
Period size: 18 Copynumber: 3.6 Consensus size: 18
66867762 CGCATCTATT
* *
66867772 ACGAACTCGAACCTCTCA
1 ACGAGCTCGGACCTCTCA
66867790 ACGAGCTCGGACCTCTCA
1 ACGAGCTCGGACCTCTCA
66867808 ACGAGCTCGGACCTCTCA
1 ACGAGCTCGGACCTCTCA
66867826 ACGAGCTCGGA
1 ACGAGCTCGGA
66867837 TGCTCGTATC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.26, C:0.37, G:0.22, T:0.15
Consensus pattern (18 bp):
ACGAGCTCGGACCTCTCA
Found at i:66869347 original size:200 final size:200
Alignment explanation
Indices: 66868999--66869358 Score: 551
Period size: 200 Copynumber: 1.8 Consensus size: 200
66868989 TTCTAGAATG
* * *
66868999 CAAGTTTTTCACTTTATTCAATTTGGTCCTTAAAATGCAATTAGACATTTTATGCATAAAATTTC
1 CAAGTTTTGCACTTTATTCAATTTGATCCCTAAAATGCAATTAGACATTTTATGCATAAAATTTC
* * *
66869064 TTCATGAAACTTTCACACAAGCATGTATTCATAACATAAACCTCATGAGAATCATAAAATAATTA
66 TTCATGAAACTTTCACACAAGCATGCATACATAACATAAACCTCATAAGAATCATAAAATAATTA
* *
66869129 TTTCTATCTTGGATTTGTGGTCTCGAAACCTCTATTCTGACTGGGCCTTAATTCGGGATGTTACA
131 TTTCTATCTCGAATTTGTGGTCTCGAAACCTCTATTCTGACTGGGCCTTAATTCGGGATGTTACA
66869194 GAACA
196 GAACA
* * *
66869199 CAAGTTTTGCA-TCTTATTCAATTTGATCCCTAAAGTTCAATTAGACATTTTATGCATAGAATTT
1 CAAGTTTTGCACT-TTATTCAATTTGATCCCTAAAATGCAATTAGACATTTTATGCATAAAATTT
* * ** * *
66869263 CTTCATGAAACTTTCACGCAAGCATGCATACATATCATGGACCTCATAATAATCATAAAATCATT
65 CTTCATGAAACTTTCACACAAGCATGCATACATAACATAAACCTCATAAGAATCATAAAATAATT
66869328 ATTTCTATCTCGAATTTGTGGTCTCGAAACC
130 ATTTCTATCTCGAATTTGTGGTCTCGAAACC
66869359 AAAGTTCCGA
Statistics
Matches: 142, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
199 1 0.01
200 141 0.99
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (200 bp):
CAAGTTTTGCACTTTATTCAATTTGATCCCTAAAATGCAATTAGACATTTTATGCATAAAATTTC
TTCATGAAACTTTCACACAAGCATGCATACATAACATAAACCTCATAAGAATCATAAAATAATTA
TTTCTATCTCGAATTTGTGGTCTCGAAACCTCTATTCTGACTGGGCCTTAATTCGGGATGTTACA
GAACA
Found at i:66878074 original size:50 final size:50
Alignment explanation
Indices: 66877997--66878113 Score: 137
Period size: 50 Copynumber: 2.3 Consensus size: 50
66877987 GACACACCAC
* * * *
66877997 AGCTCTTATGAGCATCCCGATATTTGGCTCTCACGAGATTCCCGAT-TAA
1 AGCTCTCATGAGCTTCCCGATAATTGGCTCGCACGAGATTCCCGATGTAA
* * * *
66878046 TGGCTCTCATGAGCTTCCCGATAATTGGCTCGCATGAGCTTCTCGATGTAA
1 -AGCTCTCATGAGCTTCCCGATAATTGGCTCGCACGAGATTCCCGATGTAA
*
66878097 AGCTCACATGAGCTTCC
1 AGCTCTCATGAGCTTCC
66878114 AGTTATATGG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 53 0.95
51 3 0.05
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (50 bp):
AGCTCTCATGAGCTTCCCGATAATTGGCTCGCACGAGATTCCCGATGTAA
Found at i:66878081 original size:25 final size:25
Alignment explanation
Indices: 66877998--66878092 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
66877988 ACACACCACA
* * *
66877998 GCTCTTATGAGCATCCCGATATTTG
1 GCTCTCATGAGCTTCCCGATAATTG
* *
66878023 GCTCTCACGAGATTCCCGATTAA-TG
1 GCTCTCATGAGCTTCCCGA-TAATTG
66878048 GCTCTCATGAGCTTCCCGATAATTG
1 GCTCTCATGAGCTTCCCGATAATTG
* *
66878073 GCTCGCATGAGCTTCTCGAT
1 GCTCTCATGAGCTTCCCGAT
66878093 GTAAAGCTCA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
24 3 0.05
25 54 0.92
26 2 0.03
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCGATAATTG
Found at i:66878126 original size:25 final size:24
Alignment explanation
Indices: 66878004--66878127 Score: 72
Period size: 25 Copynumber: 5.0 Consensus size: 24
66877994 CACAGCTCTT
* * *
66878004 ATGAGCATCCCGATATTTGGCTCTC
1 ATGAGC-TTCCGATATATGGCTCAC
* * *
66878029 ACGAGATTCCCGAT-TAATGGCTCTC
1 ATGAGCTT-CCGATAT-ATGGCTCAC
*
66878054 ATGAGCTTCCCGATA-ATTGGCTCGC
1 ATGAGCTT-CCGATATA-TGGCTCAC
* **
66878079 ATGAGCTTCTCGATGTAAAGCTCAC
1 ATGAGCTTC-CGATATATGGCTCAC
*
66878104 ATGAGCTTCCAGTTATATGGCTCA
1 ATGAGCTTCC-GATATATGGCTCA
66878128 AAGGGCTTTC
Statistics
Matches: 77, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
24 5 0.06
25 71 0.92
26 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (24 bp):
ATGAGCTTCCGATATATGGCTCAC
Found at i:66879569 original size:46 final size:46
Alignment explanation
Indices: 66879519--66879691 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
66879509 TGGTTGAGCA
*
66879519 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
66879565 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
66879612 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
66879658 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66879692 GGGGCGAGTT
Statistics
Matches: 108, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 61 0.56
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:66879675 original size:93 final size:93
Alignment explanation
Indices: 66879516--66879686 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
66879506 GGATGGTTGA
*
66879516 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
66879581 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
66879609 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAG
66879673 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
66879687 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66887152 original size:46 final size:46
Alignment explanation
Indices: 66887102--66887274 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
66887092 TGGTTGAGCA
*
66887102 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
66887148 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
66887195 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
66887241 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66887275 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:66887258 original size:93 final size:93
Alignment explanation
Indices: 66887099--66887269 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
66887089 GGATGGTTGA
* *
66887099 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
66887164 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
66887192 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
66887257 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66887270 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66888721 original size:30 final size:34
Alignment explanation
Indices: 66888659--66888724 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 34
66888649 CGAAACGAAC
66888659 TATTACTCGTATATACGTGAAGTACATGGAAATGA
1 TATTACTCGTATATACGTGAAG-ACATGGAAATGA
*
66888694 TATTACTTG-ATATAC-TGAAG-CAT-GAAATGA
1 TATTACTCGTATATACGTGAAGACATGGAAATGA
66888724 T
1 T
66888725 TGTTACATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 8 0.27
31 3 0.10
33 5 0.17
34 6 0.20
35 8 0.27
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (34 bp):
TATTACTCGTATATACGTGAAGACATGGAAATGA
Found at i:66891307 original size:26 final size:24
Alignment explanation
Indices: 66891278--66891326 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
66891268 ATAAAAAAAT
*
66891278 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
66891304 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
66891327 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:66891346 original size:21 final size:21
Alignment explanation
Indices: 66891297--66891355 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
66891287 ATAATAAATC
*
66891297 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
66891317 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
66891339 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
66891356 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:66903172 original size:17 final size:17
Alignment explanation
Indices: 66903146--66903197 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
66903136 AATAAATATT
*
66903146 ATTTATTTAATCAATTA
1 ATTTAATTAATCAATTA
* *
66903163 ATTTAATTAATTAACTA
1 ATTTAATTAATCAATTA
* *
66903180 AATTAATTACTCAATTA
1 ATTTAATTAATCAATTA
66903197 A
1 A
66903198 ATAATTTTCT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (17 bp):
ATTTAATTAATCAATTA
Found at i:66903198 original size:17 final size:17
Alignment explanation
Indices: 66903152--66903203 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
66903142 TATTATTTAT
*
66903152 TTAATCAATTAATTTAA
1 TTAATCAATTAAATTAA
* *
66903169 TTAATTAACTAAATTAA
1 TTAATCAATTAAATTAA
*
66903186 TTACTCAATTAAA-TAA
1 TTAATCAATTAAATTAA
66903202 TT
1 TT
66903204 TTCTCAACAC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
16 5 0.17
17 24 0.83
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAATCAATTAAATTAA
Found at i:66906773 original size:15 final size:15
Alignment explanation
Indices: 66906753--66906781 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
66906743 TTGATTAAAA
66906753 TGTAAGTATTTATGC
1 TGTAAGTATTTATGC
66906768 TGTAAGTATTTATG
1 TGTAAGTATTTATG
66906782 TTGTCTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TGTAAGTATTTATGC
Found at i:66908568 original size:24 final size:23
Alignment explanation
Indices: 66908519--66908568 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
66908509 ATAAAGTAGT
* *
66908519 TATATATTATTTTTATAATATTA
1 TATATATGATTTTTATAATATCA
66908542 TATATTATGATTTTTATTAAT-TCA
1 TATA-TATGATTTTTA-TAATATCA
66908566 TAT
1 TAT
66908569 TTTAATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.17
24 15 0.65
25 4 0.17
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TATATATGATTTTTATAATATCA
Found at i:66908703 original size:59 final size:56
Alignment explanation
Indices: 66908553--66908705 Score: 168
Period size: 59 Copynumber: 2.7 Consensus size: 56
66908543 ATATTATGAT
* *
66908553 TTTTATT-AATTCATATTTTAATAATAA--TATTAAGAATGTTATTAAATTATATATTA
1 TTTTATTAAATT-ATA-TTTAATAATAATTTATTAA-AATATGATTAAATTATATATTA
* * * *
66908609 TTTTATTAAATTGTATTTAATAATACTTATGTTAAAATATGATTAAATTATTTATTTA
1 TTTTATTAAATTATATTTAATAATAATT-TATTAAAATATGATTAAATTATATA-TTA
66908667 TTATTATTAAATTATATTTAATAATAATTTTATTAAAAT
1 TT-TTATTAAATTATATTTAATAATAA-TTTATTAAAAT
66908706 TTAAAAATAA
Statistics
Matches: 81, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
55 10 0.12
56 9 0.11
57 20 0.25
58 10 0.12
59 30 0.37
60 2 0.02
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (56 bp):
TTTTATTAAATTATATTTAATAATAATTTATTAAAATATGATTAAATTATATATTA
Found at i:66909314 original size:26 final size:26
Alignment explanation
Indices: 66909284--66909335 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
66909274 CATTTTCGAT
66909284 TCATCTAGGATGAACGCTTCGACCGA
1 TCATCTAGGATGAACGCTTCGACCGA
66909310 TCATCTAGGATGAACGCTTCGACCGA
1 TCATCTAGGATGAACGCTTCGACCGA
66909336 GTAGTCTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (26 bp):
TCATCTAGGATGAACGCTTCGACCGA
Found at i:66912973 original size:51 final size:51
Alignment explanation
Indices: 66912896--66913094 Score: 335
Period size: 51 Copynumber: 3.9 Consensus size: 51
66912886 TGGATACACG
* * *
66912896 GTGGCCTTTACATAGTACCACCCTTGTGGCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* * *
66912947 GTGGCATTCACCTAGTACCACACTTGTGTCCAAAGCTATTTTATTCACGAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
66912998 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
66913049 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
66913095 CTAAGGTTCA
Statistics
Matches: 137, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 137 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:66913162 original size:28 final size:27
Alignment explanation
Indices: 66913118--66913209 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 27
66913108 GGGAAATTTC
66913118 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
*
66913146 TTACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
66913174 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
*
66913198 TCAGTTAGCACA
1 TCACTTAGCACA
66913210 ATGTCATATC
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
24 21 0.38
25 1 0.02
27 2 0.04
28 32 0.57
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:66915538 original size:25 final size:25
Alignment explanation
Indices: 66915509--66915558 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
66915499 CCTAATGGGT
* *
66915509 TTCAGTTTAGCTCTTTCAAGTTTTA
1 TTCAGTTCAGCTCTCTCAAGTTTTA
66915534 TTCAGTTCAGCTCTCTCAAGTTTTA
1 TTCAGTTCAGCTCTCTCAAGTTTTA
66915559 GTTTAACCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (25 bp):
TTCAGTTCAGCTCTCTCAAGTTTTA
Found at i:66917590 original size:60 final size:61
Alignment explanation
Indices: 66917497--66917631 Score: 186
Period size: 60 Copynumber: 2.2 Consensus size: 61
66917487 GAATCTGTTA
* *
66917497 GTAAAAAATAAAAAGTAAAAATCACTAGCAACTATTTTCTACTTTATTTTAATT-TTTGAT
1 GTAAAAAATAAAAAATAAAAATCACTAGCAACTATTTTCAACTTTATTTTAATTCTTTGAT
* * * *
66917557 GTAAAAAATAAAAAATAAAAAAT-ACTTGCAACTATTTTCAATTTTATTTTTATTCTTTTAT
1 GTAAAAAATAAAAAAT-AAAAATCACTAGCAACTATTTTCAACTTTATTTTAATTCTTTGAT
66917618 GTAAAAAA-AAAAAA
1 GTAAAAAATAAAAAA
66917632 GACAACAAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
60 48 0.72
61 19 0.28
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.39
Consensus pattern (61 bp):
GTAAAAAATAAAAAATAAAAATCACTAGCAACTATTTTCAACTTTATTTTAATTCTTTGAT
Found at i:66934289 original size:18 final size:19
Alignment explanation
Indices: 66934257--66934293 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
66934247 AGCACCACGA
*
66934257 CCCCTCCCACGACCACCAG
1 CCCCTCCAACGACCACCAG
66934276 CCCCTCCAAC-ACCACCAG
1 CCCCTCCAACGACCACCAG
66934294 ATGCACCTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.62, G:0.08, T:0.05
Consensus pattern (19 bp):
CCCCTCCAACGACCACCAG
Found at i:66936476 original size:34 final size:34
Alignment explanation
Indices: 66936412--66936478 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
66936402 ACTCGAACCC
* *
66936412 TTGAACCTTAAATTTGAGTCATGAACCCCAAACT
1 TTGAACCTTAAATTTAAATCATGAACCCCAAACT
66936446 TTGAACCTTAAACTTTAAAT-ATCGAA-CCCAAAC
1 TTGAACCTTAAA-TTTAAATCAT-GAACCCCAAAC
66936479 CCTAAACCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 21 0.72
35 8 0.28
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (34 bp):
TTGAACCTTAAATTTAAATCATGAACCCCAAACT
Found at i:66936513 original size:15 final size:15
Alignment explanation
Indices: 66936493--66936521 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
66936483 AACCTTGAGA
66936493 TTTGGGGTTCAAGGG
1 TTTGGGGTTCAAGGG
66936508 TTTGGGGTTCAAGG
1 TTTGGGGTTCAAGG
66936522 TTCAAGGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.45, T:0.34
Consensus pattern (15 bp):
TTTGGGGTTCAAGGG
Found at i:66937649 original size:18 final size:18
Alignment explanation
Indices: 66937626--66937662 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
66937616 TATAGTTTGG
* *
66937626 TATTCGATTTATTCGAAT
1 TATTCGAGTTATTCAAAT
66937644 TATTCGAGTTATTCAAAT
1 TATTCGAGTTATTCAAAT
66937662 T
1 T
66937663 CAAAAACCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.49
Consensus pattern (18 bp):
TATTCGAGTTATTCAAAT
Found at i:66939049 original size:11 final size:11
Alignment explanation
Indices: 66939033--66939059 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
66939023 CTAAAAATAC
66939033 ATTAATTAAAA
1 ATTAATTAAAA
66939044 ATTAATTAAAA
1 ATTAATTAAAA
66939055 ATTAA
1 ATTAA
66939060 ATGCGCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
ATTAATTAAAA
Found at i:66939258 original size:15 final size:15
Alignment explanation
Indices: 66939238--66939270 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
66939228 TATAATTGTG
66939238 AAGGAAAAGAAAGAA
1 AAGGAAAAGAAAGAA
66939253 AAGGAAAAGAAAGAA
1 AAGGAAAAGAAAGAA
66939268 AAG
1 AAG
66939271 CTTAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
AAGGAAAAGAAAGAA
Found at i:66940838 original size:5 final size:5
Alignment explanation
Indices: 66940824--66940895 Score: 54
Period size: 5 Copynumber: 14.4 Consensus size: 5
66940814 AAATTAAAGT
* * * * * *
66940824 ATATC TTATC ATATC ATAAC GTATC GTAAC ATATC ATATC ATATC ATATT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
* * * *
66940874 GTAAC AAAGC ATATC ATATC AT
1 ATATC ATATC ATATC ATATC AT
66940896 GTCCTACCCC
Statistics
Matches: 50, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (5 bp):
ATATC
Found at i:66940892 original size:25 final size:25
Alignment explanation
Indices: 66940833--66940895 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
66940823 TATATCTTAT
* * * *
66940833 CATATCATAACGTATCGTAACATAT
1 CATATCATATCATATCGTAACAAAG
*
66940858 CATATCATATCATATTGTAACAAAG
1 CATATCATATCATATCGTAACAAAG
66940883 CATATCATATCAT
1 CATATCATATCAT
66940896 GTCCTACCCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.33
Consensus pattern (25 bp):
CATATCATATCATATCGTAACAAAG
Found at i:66941158 original size:7 final size:7
Alignment explanation
Indices: 66941120--66941169 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
66941110 AAACACATGC
66941120 ATATCAT
1 ATATCAT
*
66941127 A-ATTAT
1 ATATCAT
66941133 ATA-CAT
1 ATATCAT
* *
66941139 ACATACTT
1 ATAT-CAT
66941147 ATATCAT
1 ATATCAT
66941154 ATATCAT
1 ATATCAT
66941161 ATATCAT
1 ATATCAT
66941168 AT
1 AT
66941170 GGCATGCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
6 9 0.26
7 20 0.59
8 5 0.15
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (7 bp):
ATATCAT
Found at i:66943512 original size:29 final size:27
Alignment explanation
Indices: 66943472--66943583 Score: 91
Period size: 29 Copynumber: 4.0 Consensus size: 27
66943462 AATATGATTG
*
66943472 GGGCCTAATGGGCCATATGAAGGTGAATT
1 GGGCCTAGTGGGCCATATGAA--TGAATT
* *
66943501 GGGCCTAGTGGGCTATAAGAATATGAATT
1 GGGCCTAGTGGGCCATATG-A-ATGAATT
* *
66943530 GGGCC-AGATGGGCCATTTGAATAAGATT
1 GGGCCTAG-TGGGCCATATGAATGA-ATT
* * *
66943558 GGACCTAGTGGGCTATATGCATGAAT
1 GGGCCTAGTGGGCCATATGAATGAAT
66943584 GTAGGGGTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
27 5 0.08
28 22 0.33
29 37 0.56
30 1 0.02
31 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (27 bp):
GGGCCTAGTGGGCCATATGAATGAATT
Found at i:66948028 original size:37 final size:37
Alignment explanation
Indices: 66947978--66948056 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
66947968 TTATTACGAA
* * *
66947978 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
66948015 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
66948052 GTCTT
1 GTCTT
66948057 TAGAACTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:66948253 original size:47 final size:47
Alignment explanation
Indices: 66948175--66948656 Score: 734
Period size: 47 Copynumber: 10.2 Consensus size: 47
66948165 CCCTTCGGGA
* * * * * *
66948175 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66948222 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** * *
66948269 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCGTTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66948316 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66948365 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66948412 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATGAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66948457 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
66948506 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
66948553 CCCATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66948601 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66948648 CTTATCACA
1 CTTATCACA
66948657 ATTTAGAATT
Statistics
Matches: 399, Mismatches: 29, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
45 43 0.11
47 224 0.56
48 45 0.11
49 87 0.22
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66948369 original size:96 final size:94
Alignment explanation
Indices: 66948175--66948656 Score: 725
Period size: 96 Copynumber: 5.1 Consensus size: 94
66948165 CCCTTCGGGA
** * * * * * * *
66948175 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
66948240 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
66948269 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCGTTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
66948334 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
66948365 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
66948428 TTTCACATTCATCACATCGGCCATGAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
66948457 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACACATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66948522 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
** *
66948553 CCCATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTA-TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
66948618 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
66948648 CTTATCACA
1 CTTATCACA
66948657 ATTTAGAATT
Statistics
Matches: 354, Mismatches: 27, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
92 47 0.13
94 89 0.25
95 82 0.23
96 126 0.36
97 10 0.03
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:66952086 original size:40 final size:40
Alignment explanation
Indices: 66952042--66952445 Score: 186
Period size: 40 Copynumber: 10.0 Consensus size: 40
66952032 GAATACATGT
* *
66952042 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAA
66952082 CACCAGCACGAATGCTCTTCGGAACTTGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGG-----GACCTAGCCCGGATATAA
* * * * ***
66952127 CACCAGCACGAATGCTCTTTGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAA
* * **
66952167 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATTTAGTAA
1 CACCAGCACGAATGCTCTTCGGGACCTAGCCCGGA--TA-TAA
* * * * *
66952210 C-TC-GCACCAATGC-CTTCGGGTCTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAA
** * * * *
66952247 CAACTTGCAC-AATTGC-CTTCGGGTCTTAGCCTGGATATAT
1 C-ACCAGCACGAA-TGCTCTTCGGGACCTAGCCCGGATATAA
* * * *
66952287 CAATTC-GCACAAATGC-CTTCGGGTCTTAGCCCGGATATAA
1 C-A-CCAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAA
* * * * * *
66952327 TCACTAGCTC-AATTGC-CTTCGGTACTTAGCCGGGATATAG
1 -CACCAGCACGAA-TGCTCTTCGGGACCTAGCCCGGATATAA
* * *
66952367 CAACTC-GCACGAATGC-CTTCGGGTCTTAGCCCGGATATAT
1 C-AC-CAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAA
** * *
66952407 CAACTTGCAC-AATTGC-CTTCGGGTCTTAGCCCGGATATA
1 C-ACCAGCACGAA-TGCTCTTCGGGACCTAGCCCGGATATA
66952446 TCAATTCGCA
Statistics
Matches: 298, Mismatches: 44, Indels: 44
0.77 0.11 0.11
Matches are distributed among these distances:
37 3 0.01
38 2 0.01
39 7 0.02
40 230 0.77
41 14 0.05
42 2 0.01
43 1 0.00
45 39 0.13
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAA
Found at i:66952115 original size:45 final size:45
Alignment explanation
Indices: 66952064--66952153 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
66952054 TGCTCTTCGG
66952064 GACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTT
1 GACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTT
*
66952109 GACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGAACTT
1 GACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTT
66952154 AGTCCGGATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
GACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTT
Found at i:66952446 original size:40 final size:41
Alignment explanation
Indices: 66952192--66952604 Score: 546
Period size: 40 Copynumber: 10.3 Consensus size: 41
66952182 TCTTCGGAAT
* *
66952192 TTAGCCCGGATTTAGT-AAC-TCGCACCAATGCCTTCGGGTC
1 TTAGCCCGGATATA-TCAACTTCGCACAAATGCCTTCGGGTC
*
66952232 TTAGCCCGGATATATCAACTT-GCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTTCGCACAAATGCCTTCGGGTC
*
66952272 TTAGCCTGGATATATCAA-TTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTTCGCACAAATGCCTTCGGGTC
* * *
66952312 TTAGCCCGGATATAATC-AC-TAGCTCAATTGCCTTC-GGTAC
1 TTAGCCCGGATAT-ATCAACTTCGCACAAATGCCTTCGGGT-C
* * *
66952352 TTAGCCGGGATATAGCAAC-TCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTTCGCACAAATGCCTTCGGGTC
*
66952392 TTAGCCCGGATATATCAACTT-GCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTTCGCACAAATGCCTTCGGGTC
** *
66952432 TTAGCCCGGATATATCAA-TTCGCACAAACACCGTCGGGTC
1 TTAGCCCGGATATATCAACTTCGCACAAATGCCTTCGGGTC
*
66952472 TTAGCCCGGATATATC-AGTTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTTCGCACAAATGCCTTCGGGTC
* *
66952512 TTATCCCGGATATATCAA-TTCGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATATCAACTTCGCACAAATGCCTTCGGGTC
*
66952552 TTAGCCCGGATATATCAA-TTCGCACAAATGCCTTCGAGTC
1 TTAGCCCGGATATATCAACTTCGCACAAATGCCTTCGGGTC
66952592 TTAGCCCGGATAT
1 TTAGCCCGGATAT
66952605 CATTCAAATG
Statistics
Matches: 330, Mismatches: 31, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
39 11 0.03
40 310 0.94
41 9 0.03
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (41 bp):
TTAGCCCGGATATATCAACTTCGCACAAATGCCTTCGGGTC
Found at i:66952989 original size:29 final size:29
Alignment explanation
Indices: 66952950--66953028 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
66952940 CTTAATAATC
*
66952950 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
66952980 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
66953009 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
66953029 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:66953071 original size:43 final size:43
Alignment explanation
Indices: 66953010--66953155 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
66953000 TGCATTTCAA
*
66953010 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAAACGTGAACACTTATT
*
66953053 GCCCGCACACTTAGTGCCAACCTCACAAACGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAAACGTGAACACTTATT
66953096 GCCCGCACACTTAGTGCCAATCTCACAAACGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAAACGTGAACACTTATT
66953139 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
66953156 TGAAAACCAA
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAAACGTGAACACTTATT
Found at i:66955088 original size:37 final size:37
Alignment explanation
Indices: 66955009--66955088 Score: 106
Period size: 37 Copynumber: 2.2 Consensus size: 37
66954999 CTTATTACGA
* * *
66955009 AGTCTTACCCGGACATAATCTCCACACAAAGTTATCG
1 AGTCTTACCCGGACAAAATCCCCACACAAAGTCATCG
* **
66955046 GGTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATCCCCACACAAAGTCATCG
66955083 AGTCTT
1 AGTCTT
66955089 TAGAACTCGG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCCCACACAAAGTCATCG
Found at i:66955285 original size:47 final size:47
Alignment explanation
Indices: 66955207--66955688 Score: 734
Period size: 47 Copynumber: 10.2 Consensus size: 47
66955197 CCCTTCGGGA
* * * * * *
66955207 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66955254 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** * *
66955301 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCGTTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66955348 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66955397 CTTATCACACATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66955444 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66955489 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
66955538 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66955585 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66955633 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66955680 CTTATCACA
1 CTTATCACA
66955689 ATTTAGAATT
Statistics
Matches: 400, Mismatches: 28, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
45 43 0.11
47 223 0.56
48 46 0.12
49 88 0.22
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66955401 original size:96 final size:94
Alignment explanation
Indices: 66955207--66955688 Score: 725
Period size: 96 Copynumber: 5.1 Consensus size: 94
66955197 CCCTTCGGGA
** * * * * * * *
66955207 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
66955272 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
66955301 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCGTTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
66955366 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
66955397 CTTATCACACATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
66955460 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
66955489 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACACATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66955554 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66955585 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCA
1 CTTA-TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
66955650 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
66955680 CTTATCACA
1 CTTATCACA
66955689 ATTTAGAATT
Statistics
Matches: 355, Mismatches: 26, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
92 48 0.14
94 88 0.25
95 82 0.23
96 127 0.36
97 10 0.03
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:66955498 original size:22 final size:22
Alignment explanation
Indices: 66955425--66955498 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
66955415 TTCCACATTC
*
66955425 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAAGCCTT
*** * * *
66955447 ATCACATATACACTTTCA-CATT
1 ATCACATCGGC-CATTAAGCCTT
66955469 CATCACATCGGCCATTAAGCCTT
1 -ATCACATCGGCCATTAAGCCTT
66955492 ATCACAT
1 ATCACAT
66955499 ATATACACAC
Statistics
Matches: 36, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
22 22 0.61
23 14 0.39
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAAGCCTT
Found at i:66958370 original size:20 final size:20
Alignment explanation
Indices: 66958345--66958408 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 20
66958335 TATCGAAATC
66958345 ATAATTATAATATTGTAATT
1 ATAATTATAATATTGTAATT
** *
66958365 ATAATT-TACGATCG-AA-T
1 ATAATTATAATATTGTAATT
*
66958382 ATTATTATAATTATTGTAATT
1 ATAATTATAA-TATTGTAATT
*
66958403 GTAATT
1 ATAATT
66958409 TTTCGGTAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 7
0.66 0.19 0.15
Matches are distributed among these distances:
17 6 0.19
18 4 0.13
19 8 0.26
20 8 0.26
21 5 0.16
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.48
Consensus pattern (20 bp):
ATAATTATAATATTGTAATT
Found at i:66963951 original size:12 final size:12
Alignment explanation
Indices: 66963934--66963964 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
66963924 CCACACACAC
66963934 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
66963946 CCGTGTGCTAGG
1 CCGTGTGCCAGG
66963958 CCGTGTG
1 CCGTGTG
66963965 GAGCATACTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.29, G:0.42, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:66965489 original size:15 final size:15
Alignment explanation
Indices: 66965469--66965498 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
66965459 CTAGTAGTCC
66965469 ATAATTTTCATTTAT
1 ATAATTTTCATTTAT
66965484 ATAATTTTCATTTAT
1 ATAATTTTCATTTAT
66965499 TTCACATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (15 bp):
ATAATTTTCATTTAT
Found at i:66968777 original size:24 final size:24
Alignment explanation
Indices: 66968741--66968898 Score: 79
Period size: 24 Copynumber: 6.6 Consensus size: 24
66968731 GAGCCAACAT
* *
66968741 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
66968765 TGGCACTATGTGTGTGAAATCGAT
1 TGGCACTATGTGTGCGAATTTGAA
* *
66968789 TGGCACTATGTATGCTG-GTTTGAA
1 TGGCACTATGTGTGC-GAATTTGAA
* * ** * * *
66968813 TGTCAATAAATGAGTGAATTTCCAA
1 TGGCACTATGTGTGCGAATTT-GAA
* * *
66968838 -AGCACTATGTGTGCG-GTTTAGCA
1 TGGCACTATGTGTGCGAATTT-GAA
* *
66968861 TGGCATTATGTGTGCGAATTTGAT
1 TGGCACTATGTGTGCGAATTTGAA
*
66968885 TAGCACTATGTGTG
1 TGGCACTATGTGTG
66968899 GGAAATCGGT
Statistics
Matches: 90, Mismatches: 39, Indels: 10
0.65 0.28 0.07
Matches are distributed among these distances:
23 5 0.06
24 79 0.88
25 6 0.07
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:66974035 original size:33 final size:34
Alignment explanation
Indices: 66973958--66974050 Score: 100
Period size: 34 Copynumber: 2.8 Consensus size: 34
66973948 GTATTAGTTA
* * * *
66973958 GGCCTTAGCCCAATACAGTAACAATAGAAGTCTG
1 GGCCTAAGCCCATTACAGTAACAGTAGAAGTCGG
* *
66973992 GGCCTGAGCCCATTACAGTAACAGTAGCAGT-GG
1 GGCCTAAGCCCATTACAGTAACAGTAGAAGTCGG
*
66974025 GGCCTAAGCCCATAACAG-AATCAGTA
1 GGCCTAAGCCCATTACAGTAA-CAGTA
66974051 TAGTATGAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
32 2 0.04
33 22 0.43
34 27 0.53
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.18
Consensus pattern (34 bp):
GGCCTAAGCCCATTACAGTAACAGTAGAAGTCGG
Found at i:66980089 original size:24 final size:24
Alignment explanation
Indices: 66980053--66980214 Score: 87
Period size: 24 Copynumber: 6.8 Consensus size: 24
66980043 GAGCCAACAT
* *
66980053 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
66980077 TGGCACTATGTGTGTGAAATCGAT
1 TGGCACTATGTGTGCGAATTTGAA
* *
66980101 TGGCACTATGTATGCTG-GTTTGAA
1 TGGCACTATGTGTGC-GAATTTGAA
* * ** * * *
66980125 TGTCAATAAATGAGTGAATTTCCAA
1 TGGCACTATGTGTGCGAATTT-GAA
* * *
66980150 -AGCACTATGTGTGC-AGTTTAGCA
1 TGGCACTATGTGTGCGAATTT-GAA
* *
66980173 TGGCACTATGTGTGCTAATTTGAT
1 TGGCACTATGTGTGCGAATTTGAA
*
66980197 TAGCACTATGTGTGCGAA
1 TGGCACTATGTGTGCGAA
66980215 ATCGGTTGAG
Statistics
Matches: 95, Mismatches: 38, Indels: 10
0.66 0.27 0.07
Matches are distributed among these distances:
23 6 0.06
24 82 0.86
25 7 0.07
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:66990624 original size:46 final size:46
Alignment explanation
Indices: 66990574--66990739 Score: 196
Period size: 46 Copynumber: 3.6 Consensus size: 46
66990564 GTTGAGCATT
66990574 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
66990620 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* *
66990667 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
66990713 CGAGCTCGTTGAGTTGAGTCTGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
66990740 GCTTGTGGGC
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 53 0.52
47 29 0.29
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:66990738 original size:93 final size:93
Alignment explanation
Indices: 66990569--66990740 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
66990559 GGATGGTTGA
* * *
66990569 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66990634 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
66990662 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
66990727 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
66990741 CTTGTGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66996283 original size:34 final size:33
Alignment explanation
Indices: 66996217--66996288 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
66996207 TGTTACTATC
* *
66996217 ACTGTAATGGGCTAAGGCCCACATTGATATTGA
1 ACTGTAATGGGCTAAGGCCCACACTGAAATTGA
66996250 TACTGTAATGGGCTAAGGCCCTA-ACTGAAATTGA
1 -ACTGTAATGGGCTAAGGCCC-ACACTGAAATTGA
66996284 ACTGT
1 ACTGT
66996289 TACTGAAATG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
33 5 0.14
34 29 0.83
35 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (33 bp):
ACTGTAATGGGCTAAGGCCCACACTGAAATTGA
Found at i:67004809 original size:27 final size:27
Alignment explanation
Indices: 67004772--67004841 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
67004762 ATATATACAT
67004772 CACAT-AGGGCAAAACAGCCACCTTAC
1 CACATAAGGGCAAAACAGCCACCTTAC
* **
67004798 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGCCACCTTAC
67004825 CACATAAGGGCAAAACA
1 CACATAAGGGCAAAACA
67004842 ATTATTTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 5 0.12
27 35 0.88
ACGTcount: A:0.43, C:0.27, G:0.16, T:0.14
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGCCACCTTAC
Found at i:67004848 original size:27 final size:27
Alignment explanation
Indices: 67004772--67004850 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 27
67004762 ATATATACAT
** **
67004772 CACAT-AGGGCAAAACAGCCACCTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
*
67004798 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
*
67004825 CACATAAGGGCAAAACAATTATTTTA
1 CACATAAGGGCAAAACAATCATTTTA
67004851 TCAATTAGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 5 0.11
27 42 0.89
ACGTcount: A:0.42, C:0.24, G:0.14, T:0.20
Consensus pattern (27 bp):
CACATAAGGGCAAAACAATCATTTTAC
Found at i:67018530 original size:119 final size:119
Alignment explanation
Indices: 67018319--67018557 Score: 406
Period size: 119 Copynumber: 2.0 Consensus size: 119
67018309 TTTGATATAT
* *** *
67018319 AAGAACATGAAAGCCAAATGTTTACATAAAAAACTAAAATTTAAATTTCAATAAATAAATAGAAA
1 AAGAACATGAAAACCAAATGTTTACATAAAAAACTAAAACAAAAATTTAAATAAATAAATAGAAA
* *
67018384 CACTGAGTAAAGTAGGAGCAGCAGTCATATTTAAAGTAAAAACTGATTATAAAG
66 CACTAACTAAAGTAGGAGCAGCAGTCATATTTAAAGTAAAAACTGATTATAAAG
67018438 AAGAACATGAAAACCAAATGTTTACATAAAAAACTAAAACAAAAATTTAAATAAATAAATAGAAA
1 AAGAACATGAAAACCAAATGTTTACATAAAAAACTAAAACAAAAATTTAAATAAATAAATAGAAA
*
67018503 CACTAACTAAAGTAGGAGCAGCAGTCATATTTAAAGTAAAAACTTATTATAAAG
66 CACTAACTAAAGTAGGAGCAGCAGTCATATTTAAAGTAAAAACTGATTATAAAG
67018557 A
1 A
67018558 GAAGAAAAAT
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 112 1.00
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.23
Consensus pattern (119 bp):
AAGAACATGAAAACCAAATGTTTACATAAAAAACTAAAACAAAAATTTAAATAAATAAATAGAAA
CACTAACTAAAGTAGGAGCAGCAGTCATATTTAAAGTAAAAACTGATTATAAAG
Found at i:67018944 original size:22 final size:22
Alignment explanation
Indices: 67018919--67018963 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
67018909 TTTAATAAAA
67018919 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
67018941 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
67018963 A
1 A
67018964 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:67023545 original size:22 final size:22
Alignment explanation
Indices: 67023520--67023564 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
67023510 TTTAATAAAA
67023520 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
67023542 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
67023564 A
1 A
67023565 CAAAAAGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:67025024 original size:207 final size:207
Alignment explanation
Indices: 67024669--67025082 Score: 828
Period size: 207 Copynumber: 2.0 Consensus size: 207
67024659 AAACCAATAG
67024669 ACATGCTCACAAATATGTTTTCAAATTTCAACTCCTTAAACAATCTAACAATAGAGGAAACTTGA
1 ACATGCTCACAAATATGTTTTCAAATTTCAACTCCTTAAACAATCTAACAATAGAGGAAACTTGA
67024734 TCCACATGCTATTCCGTGTGTCTTTATTGGAATTCTTCAATGCAAAAAGGGTACAAATGTTTTCA
66 TCCACATGCTATTCCGTGTGTCTTTATTGGAATTCTTCAATGCAAAAAGGGTACAAATGTTTTCA
67024799 TCCTCCTACTTGGAGAGTCTTGATTCAATTGATGTTACTTTTGATGAAAATGTGTCCTTTTTTAA
131 TCCTCCTACTTGGAGAGTCTTGATTCAATTGATGTTACTTTTGATGAAAATGTGTCCTTTTTTAA
67024864 ACATTCTTTTGC
196 ACATTCTTTTGC
67024876 ACATGCTCACAAATATGTTTTCAAATTTCAACTCCTTAAACAATCTAACAATAGAGGAAACTTGA
1 ACATGCTCACAAATATGTTTTCAAATTTCAACTCCTTAAACAATCTAACAATAGAGGAAACTTGA
67024941 TCCACATGCTATTCCGTGTGTCTTTATTGGAATTCTTCAATGCAAAAAGGGTACAAATGTTTTCA
66 TCCACATGCTATTCCGTGTGTCTTTATTGGAATTCTTCAATGCAAAAAGGGTACAAATGTTTTCA
67025006 TCCTCCTACTTGGAGAGTCTTGATTCAATTGATGTTACTTTTGATGAAAATGTGTCCTTTTTTAA
131 TCCTCCTACTTGGAGAGTCTTGATTCAATTGATGTTACTTTTGATGAAAATGTGTCCTTTTTTAA
67025071 ACATTCTTTTGC
196 ACATTCTTTTGC
67025083 TTTAGGGGAA
Statistics
Matches: 207, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
207 207 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (207 bp):
ACATGCTCACAAATATGTTTTCAAATTTCAACTCCTTAAACAATCTAACAATAGAGGAAACTTGA
TCCACATGCTATTCCGTGTGTCTTTATTGGAATTCTTCAATGCAAAAAGGGTACAAATGTTTTCA
TCCTCCTACTTGGAGAGTCTTGATTCAATTGATGTTACTTTTGATGAAAATGTGTCCTTTTTTAA
ACATTCTTTTGC
Found at i:67028746 original size:12 final size:12
Alignment explanation
Indices: 67028729--67028753 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67028719 TTTTTTGAAT
67028729 AATCTCATTATA
1 AATCTCATTATA
67028741 AATCTCATTATA
1 AATCTCATTATA
67028753 A
1 A
67028754 GTTCTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (12 bp):
AATCTCATTATA
Found at i:67032270 original size:30 final size:29
Alignment explanation
Indices: 67032236--67032337 Score: 159
Period size: 30 Copynumber: 3.4 Consensus size: 29
67032226 GGCCGTGAGA
*
67032236 GGAGGCCGTGTGTGGCACATGACCGTGTGG
1 GGAGGCCGTGTGTGGCACATG-CCGTTTGG
*
67032266 GGAGGCCGTGTGTGGCACATGGCCATTTGG
1 GGAGGCCGTGTGTGGCACAT-GCCGTTTGG
67032296 GGAGGCCGTGTGTGGCACATTGCCGTTTGG
1 GGAGGCCGTGTGTGGCACA-TGCCGTTTGG
67032326 GGAGGCCGTGTG
1 GGAGGCCGTGTG
67032338 ATTCACAATT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
30 65 0.97
31 2 0.03
ACGTcount: A:0.12, C:0.20, G:0.46, T:0.23
Consensus pattern (29 bp):
GGAGGCCGTGTGTGGCACATGCCGTTTGG
Found at i:67065420 original size:40 final size:40
Alignment explanation
Indices: 67065363--67065576 Score: 392
Period size: 40 Copynumber: 5.3 Consensus size: 40
67065353 GAGAGTTATT
67065363 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
*
67065403 TGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
67065443 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
67065483 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
* *
67065523 CATATCCGGGCTAAGTTCCGAAAAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
*
67065563 TATATCCGTGCTAA
1 TATATCCGGGCTAA
67065577 ACCTCGAAGG
Statistics
Matches: 168, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 168 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA
Found at i:67065694 original size:57 final size:57
Alignment explanation
Indices: 67065604--67065714 Score: 177
Period size: 57 Copynumber: 1.9 Consensus size: 57
67065594 GCTGGAATTA
* *
67065604 TGAGGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAAATCAGTAGT
* * *
67065661 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAAATCAGT
67065715 CAGTGGGCAC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:67065705 original size:28 final size:28
Alignment explanation
Indices: 67065608--67065705 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
67065598 GAATTATGAG
* * *
67065608 GCACTGTGTGTGCAAGCTCTTCAACCGA
1 GCACTATGTGTGCAAGATCTTCAATCGA
* * * *
67065636 GCACTATGTGTGCCAGATCAGT-AGTTGA
1 GCACTATGTGTGCAAGATC-TTCAATCGA
*
67065664 GGCACTATGTGTGCAAGTTCTTCAATCGA
1 -GCACTATGTGTGCAAGATCTTCAATCGA
67065693 GCACTATGTGTGC
1 GCACTATGTGTGC
67065706 GAAATCAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
28 33 0.60
29 22 0.40
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCAAGATCTTCAATCGA
Found at i:67065724 original size:28 final size:27
Alignment explanation
Indices: 67065636--67065725 Score: 67
Period size: 28 Copynumber: 3.2 Consensus size: 27
67065626 CTTCAACCGA
*
67065636 GCACTATGTGTGCCAGATCAGT-AGTTGAG
1 GCACTATGTGTG-CAAATCAGTCAG-TG-G
* * * *
67065665 GCACTATGTGTGCAAGTTC-TTCAATCGA
1 GCACTATGTGTGCAA-ATCAGTCAGT-GG
67065693 GCACTATGTGTGCGAAATCAGTCAGTGG
1 GCACTATGTGTGC-AAATCAGTCAGTGG
67065721 GCACT
1 GCACT
67065726 GTGTATACGA
Statistics
Matches: 47, Mismatches: 9, Indels: 11
0.70 0.13 0.16
Matches are distributed among these distances:
28 25 0.53
29 22 0.47
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTATGTGTGCAAATCAGTCAGTGG
Found at i:67069227 original size:58 final size:58
Alignment explanation
Indices: 67069137--67069256 Score: 240
Period size: 58 Copynumber: 2.1 Consensus size: 58
67069127 TTAATTGTAT
67069137 GTATATGTGATAATGTGTATTTGGTTATGTAGCTAATTTATGTATGTGAAAATATATG
1 GTATATGTGATAATGTGTATTTGGTTATGTAGCTAATTTATGTATGTGAAAATATATG
67069195 GTATATGTGATAATGTGTATTTGGTTATGTAGCTAATTTATGTATGTGAAAATATATG
1 GTATATGTGATAATGTGTATTTGGTTATGTAGCTAATTTATGTATGTGAAAATATATG
67069253 GTAT
1 GTAT
67069257 TACATGAATT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.31, C:0.02, G:0.23, T:0.45
Consensus pattern (58 bp):
GTATATGTGATAATGTGTATTTGGTTATGTAGCTAATTTATGTATGTGAAAATATATG
Found at i:67070236 original size:50 final size:49
Alignment explanation
Indices: 67070118--67070249 Score: 151
Period size: 49 Copynumber: 2.7 Consensus size: 49
67070108 GTATAGTGCC
* *
67070118 GATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAATTCAAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATTCAATTCAAAGCT
* * **
67070167 GATGCCATGTCCCAAACATGGTCTTACACT-AGCTCTTACATATTC-TTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATT-CA-ATTCAAAGCT
* *
67070217 GATGCCATGTCCTAGACATGGTCTTATACTGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC
67070250 ACATCTCGTA
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
48 1 0.01
49 33 0.47
50 31 0.44
51 5 0.07
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATTCAATTCAAAGCT
Found at i:67073802 original size:20 final size:20
Alignment explanation
Indices: 67073777--67073855 Score: 90
Period size: 20 Copynumber: 4.0 Consensus size: 20
67073767 CTTGTACGGG
*
67073777 TTTGCACTTTGGTGCCTCTA
1 TTTGCACTTCGGTGCCTCTA
*
67073797 TTTGCACTTCGGTGCCTTTGA
1 TTTGCACTTCGGTGCCTCT-A
*
67073818 TTT-CACATT-TGTGCCTCTA
1 TTTGCAC-TTCGGTGCCTCTA
*
67073837 TTTGCACTTCGATGCCTCT
1 TTTGCACTTCGGTGCCTCT
67073856 GTTATGCATC
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
19 6 0.12
20 37 0.76
21 6 0.12
ACGTcount: A:0.11, C:0.27, G:0.18, T:0.44
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTA
Found at i:67078280 original size:35 final size:35
Alignment explanation
Indices: 67078241--67078440 Score: 267
Period size: 35 Copynumber: 5.7 Consensus size: 35
67078231 TCCATGGAAA
* *
67078241 AGTTGTGAAACATAGGTATGGTATCATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
*
67078276 AGTTGTGAAACGTAGGTATGGTATTAACCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
* * *
67078311 AGTTGTGAAACGTAGGTATGGTATTAACTATATTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
*
67078346 AGTTGTGAAATGTAGGTATGGTATTATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
** * *
67078381 AGTTAAGAAACGTAGGTATGGCATT-TCCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATTAT-CCATACTG
* *
67078416 AGTTGTAAAATGTAGGTATGGTATT
1 AGTTGTGAAACGTAGGTATGGTATT
67078441 TCAATGAGGA
Statistics
Matches: 145, Mismatches: 19, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
34 1 0.01
35 144 0.99
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
Found at i:67078412 original size:105 final size:105
Alignment explanation
Indices: 67078241--67078440 Score: 301
Period size: 105 Copynumber: 1.9 Consensus size: 105
67078231 TCCATGGAAA
** *
67078241 AGTTGTGAAACATAGGTATGGTATCATCCATACTGAGTTGTGAAACGTAGGTATGGTATTAACCA
1 AGTTGTGAAACATAGGTATGGTATCATCCATACTGAGTTAAGAAACGTAGGTATGGCATTAACCA
* *
67078306 TACTGAGTTGTGAAACGTAGGTATGGTATTAACTATATTG
66 TACCGAGTTGTAAAACGTAGGTATGGTATTAACTATATTG
** * **
67078346 AGTTGTGAAATGTAGGTATGGTATTATCCATACTGAGTTAAGAAACGTAGGTATGGCATTTCCCA
1 AGTTGTGAAACATAGGTATGGTATCATCCATACTGAGTTAAGAAACGTAGGTATGGCATTAACCA
*
67078411 TACCGAGTTGTAAAATGTAGGTATGGTATT
66 TACCGAGTTGTAAAACGTAGGTATGGTATT
67078441 TCAATGAGGA
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
105 84 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (105 bp):
AGTTGTGAAACATAGGTATGGTATCATCCATACTGAGTTAAGAAACGTAGGTATGGCATTAACCA
TACCGAGTTGTAAAACGTAGGTATGGTATTAACTATATTG
Found at i:67085800 original size:70 final size:70
Alignment explanation
Indices: 67085697--67085861 Score: 215
Period size: 70 Copynumber: 2.4 Consensus size: 70
67085687 TTCATGGCAA
* ** * **
67085697 AGTTGTGAAACGTAGGTATGGTATCATCTATACTGAGTTGTGAAACGTAGGTATGGTATTAACCA
1 AGTTGTGAAACGTAGGTATGGTATTATCTATACTGAGTTAAGAAACGTAGGTACGACATTAACCA
*
67085762 TACTG
66 TACCG
**
67085767 AGTTGTGAAACGTAGGTATGGTATTATAC-ATACTGAGTTAAGAAACGTAGGTACGACATTTCCC
1 AGTTGTGAAACGTAGGTATGGTATTAT-CTATACTGAGTTAAGAAACGTAGGTACGACATTAACC
67085831 ATACCG
65 ATACCG
* *
67085837 AGTTGTAAAATGTAGGTATGGTATT
1 AGTTGTGAAACGTAGGTATGGTATT
67085862 TCAATGAGGA
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
70 82 0.99
71 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.32
Consensus pattern (70 bp):
AGTTGTGAAACGTAGGTATGGTATTATCTATACTGAGTTAAGAAACGTAGGTACGACATTAACCA
TACCG
Found at i:67085863 original size:35 final size:34
Alignment explanation
Indices: 67085697--67085863 Score: 190
Period size: 35 Copynumber: 4.8 Consensus size: 34
67085687 TTCATGGCAA
* *
67085697 AGTTGTGAAACGTAGGTATGGTATCATCTATACTG
1 AGTTGTGAAACGTAGGTATGGTAT-TTCCATACTG
*
67085732 AGTTGTGAAACGTAGGTATGGTATTAACCATACTG
1 AGTTGTGAAACGTAGGTATGGTATT-TCCATACTG
*
67085767 AGTTGTGAAACGTAGGTATGGTATTATACATACTG
1 AGTTGTGAAACGTAGGTATGGTATT-TCCATACTG
** * ** *
67085802 AGTTAAGAAACGTAGGTACGACATTTCCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATTT-CCATACTG
* *
67085837 AGTTGTAAAATGTAGGTATGGTATTTC
1 AGTTGTGAAACGTAGGTATGGTATTTC
67085864 AATGAGGAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
34 2 0.02
35 109 0.98
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (34 bp):
AGTTGTGAAACGTAGGTATGGTATTTCCATACTG
Found at i:67087304 original size:93 final size:93
Alignment explanation
Indices: 67087194--67087364 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
67087184 GCCCCTAAGT
* * *
67087194 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAAATCAGACTCAACTCAA
*
67087259 TGAGTTCGGATGCCTAGTTATATCTCAC
66 CGAGTTCGGATGCCTAGTTATATCTCAC
* * * *
67087287 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAAATCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAAATCAGACTCAACTCAA
67087352 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67087365 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAAATCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTATATCTCAC
Found at i:67087352 original size:46 final size:46
Alignment explanation
Indices: 67087189--67087361 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
67087179 AACCCGCCCC
* * * *
67087189 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * **
67087235 TAAATGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTTATAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
67087283 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
67087328 TAAGTGAAATCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67087362 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 57 0.57
47 27 0.27
48 2 0.02
49 2 0.02
50 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:67089217 original size:21 final size:21
Alignment explanation
Indices: 67089191--67089231 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
67089181 CTTAATGAGT
67089191 TTATTTTTAAAAGAAACAAAC
1 TTATTTTTAAAAGAAACAAAC
67089212 TTATTTTTAAAAGAAACAAA
1 TTATTTTTAAAAGAAACAAA
67089232 TGAGACCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.54, C:0.07, G:0.05, T:0.34
Consensus pattern (21 bp):
TTATTTTTAAAAGAAACAAAC
Found at i:67094966 original size:46 final size:45
Alignment explanation
Indices: 67094870--67095086 Score: 235
Period size: 46 Copynumber: 4.7 Consensus size: 45
67094860 GGGGTAAGTT
* * *
67094870 GCCGATGCCATGTCCCAGACATGATCTTACACTGAC-ACATTTC-ATA
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTACATCTCGA-G
67094916 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCGAG
* *
67094962 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCTA-ATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTACATCTCGAG
* * *
67095008 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-ACAT-CTCGAG
*
67095056 GCCGATGTATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
67095087 AGCTCACACA
Statistics
Matches: 150, Mismatches: 11, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
44 11 0.07
45 15 0.10
46 70 0.47
47 32 0.21
48 21 0.14
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCGAG
Found at i:67095059 original size:94 final size:92
Alignment explanation
Indices: 67094870--67095094 Score: 282
Period size: 94 Copynumber: 2.4 Consensus size: 92
67094860 GGGGTAAGTT
*
67094870 GCCGATGCCATGTCCCAGACATGATCTTACACT-G-ACACATTTCATAGCCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAG
*
67094933 ACATGTCTTACACTGGCTTACATCTCGAG
64 ACATGTCTTACACTGGCTTACATATCGAG
*
67094962 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCTA-ATCTCA-ATGCCGATGCCATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-ACATCTCATA-GCCGATG-CATGTCCCA
*
67095025 GACATGGTCTTACACTGGCTCT-CATAAT-GTG
63 GACAT-GTCTTACACTGGCT-TACAT-ATCGAG
* *
67095056 GCCGATGTATGTCCCAGACATGTCTTACACTAGCTCACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACACA
67095095 CAAGTGTCCC
Statistics
Matches: 118, Mismatches: 6, Indels: 16
0.84 0.04 0.11
Matches are distributed among these distances:
90 9 0.08
91 17 0.14
92 20 0.17
93 16 0.14
94 54 0.46
95 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGAC
ATGTCTTACACTGGCTTACATATCGAG
Found at i:67111078 original size:31 final size:29
Alignment explanation
Indices: 67111030--67111104 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 29
67111020 TTGTAAAAAG
*
67111030 TTTTGATAAATTATATTTAAGTTCATTAAA
1 TTTTAATAAATTATATTTAAGTT-ATTAAA
* * *
67111060 TTATTAATAATTTATATTTTAGTTATTTAA
1 TT-TTAATAAATTATATTTAAGTTATTAAA
67111090 TTTTAA-AAAGTTATA
1 TTTTAATAAA-TTATA
67111105 AAATGATTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 2 0.05
29 9 0.24
30 9 0.24
31 18 0.47
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.53
Consensus pattern (29 bp):
TTTTAATAAATTATATTTAAGTTATTAAA
Found at i:67117083 original size:24 final size:24
Alignment explanation
Indices: 67117056--67117101 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
67117046 ACACTCACTT
*
67117056 AATC-ATGGTCTAATTGCTATTTTG
1 AATCTATGG-CTAATTGCGATTTTG
*
67117080 AATCTTTGGCTAATTGCGATTT
1 AATCTATGGCTAATTGCGATTT
67117102 AAGTCCCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.24, C:0.13, G:0.17, T:0.46
Consensus pattern (24 bp):
AATCTATGGCTAATTGCGATTTTG
Found at i:67121106 original size:40 final size:40
Alignment explanation
Indices: 67121051--67121261 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
67121041 ATTTGAATGA
*
67121051 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
67121091 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
67121131 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
67121171 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
67121211 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
67121251 TATCC-GGCTAA
1 TATCCGGGCTAA
67121262 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:67131621 original size:24 final size:23
Alignment explanation
Indices: 67131593--67131681 Score: 83
Period size: 24 Copynumber: 3.8 Consensus size: 23
67131583 AACCTCATAA
*
67131593 TGAGCTGATAATAGTAAGCTCGAT
1 TGAGCTGA-AATAGTAAGCTCTAT
** *
67131617 TGAGCTGGAAACGGGAAGCTCTAT
1 TGAGCT-GAAATAGTAAGCTCTAT
* *
67131641 TGAGCTG-AATAGTAAGTTCTTT
1 TGAGCTGAAATAGTAAGCTCTAT
67131663 TGAGCT-AAATTAGTAAGCT
1 TGAGCTGAAA-TAGTAAGCT
67131682 TATACAAGTT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
22 18 0.35
23 9 0.17
24 23 0.44
25 2 0.04
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.30
Consensus pattern (23 bp):
TGAGCTGAAATAGTAAGCTCTAT
Found at i:67137642 original size:25 final size:25
Alignment explanation
Indices: 67137589--67137642 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
67137579 AACATGATTT
* * ** *
67137589 CTCTGGAAATCCTTTGTGGCTAATT
1 CTCTGGAAAGCCTTTATGGAAAATA
67137614 CTCTGGAAAGCCTTTATGGAAAATA
1 CTCTGGAAAGCCTTTATGGAAAATA
67137639 CTCT
1 CTCT
67137643 AAAAGTCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (25 bp):
CTCTGGAAAGCCTTTATGGAAAATA
Found at i:67148183 original size:25 final size:25
Alignment explanation
Indices: 67148164--67148223 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
67148154 CTCAGCTTGT
*
67148164 ATAAGCTTACCATTATTCAGCTCAC
1 ATAAGCTTACCATTACTCAGCTCAC
* * *
67148189 ATGAGCTTACCATTACTCAGATCAT
1 ATAAGCTTACCATTACTCAGCTCAC
*
67148214 ATGAGCTTAC
1 ATAAGCTTAC
67148224 TGATTACAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.32
Consensus pattern (25 bp):
ATAAGCTTACCATTACTCAGCTCAC
Found at i:67148252 original size:24 final size:25
Alignment explanation
Indices: 67148216--67148272 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
67148206 CAGATCATAT
* *
67148216 GAGCTTACTGATT-ACAGCTCGTAA
1 GAGCATACCGATTCACAGCTCGTAA
* *
67148240 GAGCATACCGATTCAGAGCTCGTAT
1 GAGCATACCGATTCACAGCTCGTAA
*
67148265 TAGCATAC
1 GAGCATAC
67148273 ATGTGCAGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
GAGCATACCGATTCACAGCTCGTAA
Found at i:67150690 original size:20 final size:18
Alignment explanation
Indices: 67150643--67150749 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
67150633 CAAGATAAAC
67150643 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
67150660 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
67150680 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
67150699 ATTAAGA-TAAGTA-TTAA-
1 ATTAA-ATTAA-TATTTAAT
*
67150716 ATTAAATTAAATATTAAATT
1 ATTAAATT-AATATTTAA-T
*
67150736 ATTAAAATAATATT
1 ATTAAATTAATATT
67150750 ATTTTTGGAA
Statistics
Matches: 70, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
16 1 0.01
17 16 0.23
18 8 0.11
19 20 0.29
20 25 0.36
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:67150730 original size:17 final size:17
Alignment explanation
Indices: 67150638--67150736 Score: 64
Period size: 17 Copynumber: 5.8 Consensus size: 17
67150628 ATCTACAAGA
*
67150638 TAAACATTAAATTAAAT
1 TAAATATTAAATTAAAT
*
67150655 TTAATATTAAGA-TAATCACT
1 TAAATATTAA-ATTAA--A-T
*
67150675 TTAATATTAAATT-AAT
1 TAAATATTAAATTAAAT
* *
67150691 AAAATACT--ATTAAGA-
1 TAAATATTAAATTAA-AT
*
67150706 TAAGTATTAAATTAAAT
1 TAAATATTAAATTAAAT
67150723 TAAATATTAAATTA
1 TAAATATTAAATTA
67150737 TTAAAATAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 20
0.68 0.10 0.22
Matches are distributed among these distances:
14 3 0.05
15 6 0.10
16 8 0.13
17 30 0.48
18 1 0.02
19 3 0.05
20 12 0.19
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (17 bp):
TAAATATTAAATTAAAT
Found at i:67166370 original size:46 final size:46
Alignment explanation
Indices: 67166303--67166477 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
67166293 TGTAACCCGC
67166303 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
67166349 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * *
67166399 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
67166442 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
67166478 ATGCTCAACC
Statistics
Matches: 112, Mismatches: 6, Indels: 22
0.80 0.04 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.04
44 1 0.01
46 64 0.57
47 27 0.24
48 1 0.01
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:67166423 original size:93 final size:93
Alignment explanation
Indices: 67166311--67166481 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67166301 GCCCATAAGT
* *
67166311 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
67166376 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
67166404 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
67166469 CGAGTTCGGATGC
66 CGAGCTCGGATGC
67166482 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Done.