Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 208 of 316
Found at i:67805402 original size:39 final size:39
Alignment explanation
Indices: 67805328--67805510 Score: 208
Period size: 39 Copynumber: 4.6 Consensus size: 39
67805318 GCTACTCGTT
*
67805328 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
* *
67805368 CAATTGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
67805407 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
67805446 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
67805487 CAAA-GCCTTCGGACTTAGCTCGGA
1 CAAATGCCTTCGGACTTAGCCCGGA
67805511 CATCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 79 0.65
40 35 0.29
41 8 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67805471 original size:79 final size:80
Alignment explanation
Indices: 67805328--67805510 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
67805318 GCTACTCGTT
* * *
67805328 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
* *
67805392 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
* **
67805407 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGG
* *
67805471 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
* *
67805487 CAAA-GCCTTCGGACTTAGCTCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGA
67805511 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
78 33 0.37
79 48 0.54
80 8 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:67812306 original size:27 final size:27
Alignment explanation
Indices: 67812276--67812445 Score: 178
Period size: 27 Copynumber: 6.3 Consensus size: 27
67812266 GTAAAATGGC
* * * *
67812276 AATTTTACCCCACAAGGGTATCTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
**
67812303 AATTCTACCCTACAGGGGTATTTCAAT
1 AATTCTACCCTACAGGGGTATTTCGGT
** * *
67812330 TTTTCCACCCTACAAGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* *
67812357 AATTCTATCCTACAGGGGTATTTCGCT
1 AATTCTACCCTACAGGGGTATTTCGGT
* **
67812384 AATTCTACCCTACAGGGGTAATTCAAT
1 AATTCTACCCTACAGGGGTATTTCGGT
* *
67812411 AATTCTACCCTACAGAGGTATTTTGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
67812438 TATTCTAC
1 AATTCTAC
67812446 AACTTATCCA
Statistics
Matches: 115, Mismatches: 28, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCGGT
Found at i:67812388 original size:81 final size:81
Alignment explanation
Indices: 67812291--67812444 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
67812281 TACCCCACAA
* * **
67812291 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATTTTTCCACCCTACA-AGGGTATTTCG
1 GGGTATCTCGCTAATTCTACCCTACAGGGGTAATTCAATAATTCCACCCTACAGA-GGTATTTCG
67812355 GTAATTCTATCCTACAG
65 GTAATTCTATCCTACAG
* * *
67812372 GGGTATTTCGCTAATTCTACCCTACAGGGGTAATTCAATAATTCTACCCTACAGAGGTATTTTGG
1 GGGTATCTCGCTAATTCTACCCTACAGGGGTAATTCAATAATTCCACCCTACAGAGGTATTTCGG
*
67812437 TTATTCTA
66 TAATTCTA
67812445 CAACTTATCC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 63 0.98
82 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (81 bp):
GGGTATCTCGCTAATTCTACCCTACAGGGGTAATTCAATAATTCCACCCTACAGAGGTATTTCGG
TAATTCTATCCTACAG
Found at i:67816120 original size:44 final size:44
Alignment explanation
Indices: 67816051--67816137 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
67816041 ATGTATGAGT
*
67816051 CATCCGAGCTCGTTGAGTTGTTCCGAGTTCATTATGGATGCGAG
1 CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGAG
*
67816095 CATCTGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
1 CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
67816138 TACATGTAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (44 bp):
CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGAG
Found at i:67832967 original size:40 final size:40
Alignment explanation
Indices: 67832884--67833064 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
67832874 AATCAAGCAT
** ** * *
67832884 CTTCGGGGTTTAG-CCGGATATAAACACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
67832922 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
67832962 CTTCGGGACTTAGCCCGGATATAGTCGA-TAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * * *
67833002 CTTC-GAATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
67833043 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
67833065 CATTCGAGTA
Statistics
Matches: 115, Mismatches: 21, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
38 10 0.09
39 17 0.15
40 58 0.50
41 28 0.24
42 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:67834594 original size:24 final size:24
Alignment explanation
Indices: 67834567--67834615 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
67834557 AATTACATAT
67834567 ATTAGACAATAAATATCACATTCA
1 ATTAGACAATAAATATCACATTCA
67834591 ATTAGACAATAAATATCACATTCA
1 ATTAGACAATAAATATCACATTCA
67834615 A
1 A
67834616 ACATTTCGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.16, G:0.04, T:0.29
Consensus pattern (24 bp):
ATTAGACAATAAATATCACATTCA
Found at i:67841014 original size:41 final size:40
Alignment explanation
Indices: 67840887--67841031 Score: 168
Period size: 40 Copynumber: 3.6 Consensus size: 40
67840877 CTCGCACAAG
* * * * *
67840887 GCCTCCGGGTCTTAACCCGGATATGGTC-ACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGA-TAGCACAAAT
67840927 GCCTTCGGGACTTAGCCCGGATATAGTCGATAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGATAGCACAAAT
* * * *
67840967 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCG-ATAGCACAAAT
67841008 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
67841032 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 56 0.62
41 28 0.31
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGATAGCACAAAT
Found at i:67846585 original size:36 final size:36
Alignment explanation
Indices: 67846545--67846617 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
67846535 ATGCATGATG
67846545 TATGGCTAAATTAATAATTTAACTAGCAATGGTACA
1 TATGGCTAAATTAATAATTTAACTAGCAATGGTACA
* *
67846581 TATGGCTAAATTAATAATTTGACTAGTAATGGTACA
1 TATGGCTAAATTAATAATTTAACTAGCAATGGTACA
67846617 T
1 T
67846618 TTTCACTACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.36
Consensus pattern (36 bp):
TATGGCTAAATTAATAATTTAACTAGCAATGGTACA
Found at i:67847490 original size:34 final size:34
Alignment explanation
Indices: 67847452--67847547 Score: 165
Period size: 34 Copynumber: 2.8 Consensus size: 34
67847442 CAGTAACAGT
67847452 AGCAGTCTGGGCCTTAGCCCATTTCAGTGATAAA
1 AGCAGTCTGGGCCTTAGCCCATTTCAGTGATAAA
*
67847486 AGCAGTCTGGGCCTTAGCCCTTTTCAGTGATAAA
1 AGCAGTCTGGGCCTTAGCCCATTTCAGTGATAAA
* *
67847520 ATCAGTCTGGGCCTTAGCCCATATCAGT
1 AGCAGTCTGGGCCTTAGCCCATTTCAGT
67847548 ACAGTATGCA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 58 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (34 bp):
AGCAGTCTGGGCCTTAGCCCATTTCAGTGATAAA
Found at i:67849265 original size:27 final size:27
Alignment explanation
Indices: 67849227--67849294 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
67849217 AGAGCATACG
* *
67849227 TGGGCCAAAGCCCATTACA-ATATCATT
1 TGGGCCAAAGCCCATAACAGA-ATCAAT
*
67849254 TGGGCCACAGCCCATAACAGAATCAAT
1 TGGGCCAAAGCCCATAACAGAATCAAT
*
67849281 TGGGCC-TAGCCCAT
1 TGGGCCAAAGCCCAT
67849295 CCTAGCCTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 7 0.19
27 28 0.78
28 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (27 bp):
TGGGCCAAAGCCCATAACAGAATCAAT
Found at i:67849742 original size:22 final size:22
Alignment explanation
Indices: 67849694--67849752 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
67849684 GTAAATACGT
*
67849694 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
67849716 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
67849738 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
67849753 GATCAGAATA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:67849967 original size:41 final size:41
Alignment explanation
Indices: 67849899--67850018 Score: 206
Period size: 41 Copynumber: 3.0 Consensus size: 41
67849889 TAAAAGCCAC
* *
67849899 CGGTGGATCCAC-ATCATCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
*
67849939 CGGTGGATCCACGGTCGTCAAGCAACCATGTGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
67849980 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCA
67850019 TATACTTCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
40 12 0.16
41 63 0.84
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:67850284 original size:27 final size:27
Alignment explanation
Indices: 67850254--67850773 Score: 409
Period size: 27 Copynumber: 19.3 Consensus size: 27
67850244 AGACTACAAA
* *
67850254 GGTATTTCGATAATTCTACACAA-AAAG
1 GGTATTTCGATAATTTTACA-AATCAAG
* *
67850281 GGTATTTCGATAATTTTATAAATCGAG
1 GGTATTTCGATAATTTTACAAATCAAG
67850308 GGTATTTCGATAATTTTACAAATCAAG
1 GGTATTTCGATAATTTTACAAATCAAG
* * *
67850335 AGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCAAG
* *
67850362 GGTATTTCGATAATTCTAC-ACTGCAAG
1 GGTATTTCGATAATTTTACAAAT-CAAG
*
67850389 GGTATTTCGATAATTTTACAAAT-TAG
1 GGTATTTCGATAATTTTACAAATCAAG
* * **
67850415 GGACATTTTGATAATTTTACAAAT-TGG
1 GG-TATTTCGATAATTTTACAAATCAAG
* *
67850442 AGGCATTTCGAAAATTTTACAAATCAAG
1 -GGTATTTCGATAATTTTACAAATCAAG
** * *
67850470 GGTATTTTAATAATTCTAC-ACTACAAG
1 GGTATTTCGATAATTTTACAAAT-CAAG
*
67850497 GGTATTTTGATAATTTTACAAATCGAA-
1 GGTATTTCGATAATTTTACAAATC-AAG
* *
67850524 GGTATTTCGGTAATTTTACAAATTGAA-
1 GGTATTTCGATAATTTTACAAA-TCAAG
* * *
67850551 GGTATTTCGATAATTCTAC-ACTACGAG
1 GGTATTTCGATAATTTTACAAAT-CAAG
* * * *
67850578 GGTGTTTCGGTTATTTTACAAATCAAA
1 GGTATTTCGATAATTTTACAAATCAAG
* *
67850605 GGTATCTCGTTAATTTTACAAATCGAA-
1 GGTATTTCGATAATTTTACAAATC-AAG
* * *
67850632 GGTATTTCGGTAATTCTAC-ACTACAAG
1 GGTATTTCGATAATTTTACAAAT-CAAG
* *
67850659 GGTATTTCAATAATTTTACAAATC-GG
1 GGTATTTCGATAATTTTACAAATCAAG
* *
67850685 GGTATTTC-AGTAATTTTCCAAA-CTAGG
1 GGTATTTCGA-TAATTTTACAAATC-AAG
* * *
67850712 GGTATTTTGGTAATTTTACTAATCAAG
1 GGTATTTCGATAATTTTACAAATCAAG
* * ** * *
67850739 GGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTCGATAATTTTACAAATCAAG
67850766 GGTATTTC
1 GGTATTTC
67850774 AGTAATTCTA
Statistics
Matches: 398, Mismatches: 73, Indels: 44
0.77 0.14 0.09
Matches are distributed among these distances:
25 3 0.01
26 36 0.09
27 342 0.86
28 17 0.04
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATCAAG
Found at i:67860198 original size:120 final size:120
Alignment explanation
Indices: 67860041--67860787 Score: 1291
Period size: 120 Copynumber: 6.2 Consensus size: 120
67860031 TATATTTAGA
* * * * *
67860041 AAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 AAAA-TATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGT
* *
67860106 AAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAATCATATATTTTAATT
65 AAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
* * * *
67860162 AAAATATATTTAATAATAATTAT-TTCAAATTATATTTTATAGTATCATATATTATAATTTTAGT
1 AAAATATATTTAATAATAATTATGTT-AATTTATATTTTACAGTATCATATATTATGATTTCAGT
* * *
67860226 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
65 AAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
*
67860282 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTA
*
67860347 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATT
66 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
*
67860402 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTA
*
67860467 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATT
66 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
67860522 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTA
67860587 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
66 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
67860642 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTA
1 AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTA
67860707 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
66 AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
67860762 AAAATATATTTAATAATAATTATGTT
1 AAAATATATTTAATAATAATTATGTT
67860788 TAAATATGAT
Statistics
Matches: 610, Mismatches: 13, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
119 5 0.01
120 599 0.98
121 6 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.48
Consensus pattern (120 bp):
AAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTA
AATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
Found at i:67860644 original size:18 final size:17
Alignment explanation
Indices: 67860616--67860650 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
67860606 ATTATTAAGA
*
67860616 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
67860633 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
67860651 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:67860764 original size:18 final size:17
Alignment explanation
Indices: 67860736--67860770 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
67860726 ATTATTAAGA
*
67860736 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
67860753 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
67860771 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:67860984 original size:44 final size:45
Alignment explanation
Indices: 67860935--67861025 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
67860925 ACCTCTATTC
* * *
67860935 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
67860979 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
67861024 CA
1 CA
67861026 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:67861027 original size:16 final size:16
Alignment explanation
Indices: 67861006--67861074 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
67860996 GATTAGCTAT
67861006 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
67861022 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
67861039 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
67861055 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
67861071 TACA
1 TACA
67861075 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:67861048 original size:33 final size:32
Alignment explanation
Indices: 67861006--67861074 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
67860996 GATTAGCTAT
67861006 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
67861039 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
67861071 TACA
1 TACA
67861075 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:67888599 original size:28 final size:27
Alignment explanation
Indices: 67888527--67888606 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
67888517 CTGCCAGAAT
* * * * *
67888527 AGATATTGTGACAGAGTCACTAGATAC
1 AGATATTATGGCAGAGCCACCAGAAAC
67888554 AGATATTATGGCAGAGCCACCAGAAAC
1 AGATATTATGGCAGAGCCACCAGAAAC
* *
67888581 AGATATTTGTGGCATAGCCACCAGAA
1 AGATA-TTATGGCAGAGCCACCAGAA
67888607 TGCTTCCTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 27 0.60
28 18 0.40
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (27 bp):
AGATATTATGGCAGAGCCACCAGAAAC
Found at i:67897306 original size:15 final size:15
Alignment explanation
Indices: 67897287--67897326 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
67897277 ATGAGTCTTC
*
67897287 AAAAATAAATAGAAAT
1 AAAAATAAAGA-AAAT
*
67897303 AAAAGTAAAGAAAAT
1 AAAAATAAAGAAAAT
67897318 AAAAATAAA
1 AAAAATAAA
67897327 ACGAGTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (15 bp):
AAAAATAAAGAAAAT
Found at i:67897610 original size:54 final size:55
Alignment explanation
Indices: 67897526--67897658 Score: 160
Period size: 54 Copynumber: 2.4 Consensus size: 55
67897516 TGGATAAATG
* * * * **
67897526 CGCACGCCCGTGTTCTTTTGACAGTCTTGACCACGGGTGGT-GACATGGGTGTGT
1 CGCACGCCCGTGTTATTTTGGCAGTCTTGACCACGGGTAGTAGACACGGGCATGT
* * * *
67897580 CGCACGCCCGTGTTAATTTGGCAGTTTTGACCATGGTTAGTAGACACGGGCATGT
1 CGCACGCCCGTGTTATTTTGGCAGTCTTGACCACGGGTAGTAGACACGGGCATGT
*
67897635 CGCACGCCCGTGTTGTTTTGGCAG
1 CGCACGCCCGTGTTATTTTGGCAG
67897659 GATTGCCCAC
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
54 34 0.52
55 32 0.48
ACGTcount: A:0.15, C:0.24, G:0.32, T:0.29
Consensus pattern (55 bp):
CGCACGCCCGTGTTATTTTGGCAGTCTTGACCACGGGTAGTAGACACGGGCATGT
Found at i:67900249 original size:40 final size:40
Alignment explanation
Indices: 67900144--67900390 Score: 322
Period size: 40 Copynumber: 6.2 Consensus size: 40
67900134 CGGATGATAA
* *
67900144 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
67900184 CCGGGCTAA-ACTCGAAGGCTTTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67900223 CCGGGATAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
67900263 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67900303 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
67900343 CCGGGCTATGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
67900383 CC-GGCTAA
1 CCGGGCTAA
67900391 ATTCTGAAGG
Statistics
Matches: 182, Mismatches: 22, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
39 38 0.21
40 144 0.79
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67904983 original size:40 final size:40
Alignment explanation
Indices: 67904879--67905125 Score: 313
Period size: 40 Copynumber: 6.2 Consensus size: 40
67904869 TGGATGATAA
* *
67904879 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
67904919 CCGGGCTAA-ACCCGAAGGCTTTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67904958 CTGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
67904998 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67905038 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
67905078 CCGGGCTATGTCCCAAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
67905118 CC-GGCTAA
1 CCGGGCTAA
67905126 ATTTCGAAGG
Statistics
Matches: 183, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 38 0.21
40 145 0.79
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67909884 original size:19 final size:19
Alignment explanation
Indices: 67909836--67909876 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
67909826 GCTGTGTTGA
*
67909836 TTTCT-CATGTTGGCCCAT
1 TTTCTCCATTTTGGCCCAT
67909854 TTTCTCCATTTTGGCCCAAT
1 TTTCTCCATTTTGGCCC-AT
67909874 TTT
1 TTT
67909877 GCTCTTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.12, C:0.27, G:0.12, T:0.49
Consensus pattern (19 bp):
TTTCTCCATTTTGGCCCAT
Found at i:67911843 original size:8 final size:8
Alignment explanation
Indices: 67911830--67911864 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
67911820 GTAGATCGGC
67911830 AAAAGCCG
1 AAAAGCCG
67911838 AAAAGCC-
1 AAAAGCCG
67911845 AAAATGCCG
1 AAAA-GCCG
67911854 AAAAGCCG
1 AAAAGCCG
67911862 AAA
1 AAA
67911865 GTTTGGCTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 4 0.16
8 17 0.68
9 4 0.16
ACGTcount: A:0.54, C:0.23, G:0.20, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:67912118 original size:29 final size:29
Alignment explanation
Indices: 67912088--67912221 Score: 139
Period size: 29 Copynumber: 4.7 Consensus size: 29
67912078 ATAAGTTGAT
* * *
67912088 TTGGGCCTAACGGGCTATATAAATGTGAT
1 TTGGGCCTAATGGGCCATATAAATGTGAA
* * *
67912117 TTGGGCCTAATGGCCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATAAATGTGAA
* *
67912146 TTGGGCCTGATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATAAATGTGAA
* * *
67912175 TTGGGCCTGATGGGCCATATGAATGAG-A
1 TTGGGCCTAATGGGCCATATAAATGTGAA
67912203 -TGGGCC-AAGTGGGCCATAT
1 TTGGGCCTAA-TGGGCCATAT
67912222 GCATGTATGT
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 16 0.17
28 1 0.01
29 75 0.81
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATAAATGTGAA
Found at i:67912150 original size:58 final size:58
Alignment explanation
Indices: 67912088--67912198 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 58
67912078 ATAAGTTGAT
* *
67912088 TTGGGCCTAACGGGCTATATAAATGTGATTTGGGCCTAATGGCCCATATGAATATGAA
1 TTGGGCCTAACGGGCCATATAAATGTGAATTGGGCCTAATGGCCCATATGAATATGAA
* * * * *
67912146 TTGGGCCTGATGGGCCATATGAATGTGAATTGGGCCTGATGGGCCATATGAAT
1 TTGGGCCTAACGGGCCATATAAATGTGAATTGGGCCTAATGGCCCATATGAAT
67912199 GAGATGGGCC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 46 1.00
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (58 bp):
TTGGGCCTAACGGGCCATATAAATGTGAATTGGGCCTAATGGCCCATATGAATATGAA
Found at i:67919031 original size:93 final size:93
Alignment explanation
Indices: 67918872--67919043 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
67918862 CGCCCATAAG
* * *
67918872 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATGAGTGAACTCGGACTCAACTCA
67918937 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
67918965 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGGTGAACTCGGACTCATCTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATGA-GTGAACTCGGACTCAACTC
67919029 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
67919044 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATGAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67919033 original size:46 final size:46
Alignment explanation
Indices: 67918873--67919040 Score: 168
Period size: 46 Copynumber: 3.6 Consensus size: 46
67918863 GCCCATAAGC
* * * *
67918873 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAT-GAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAG-GT
* *
67918919 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA--C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT-AGGT
67918966 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGT
*
67919012 GAACTCGGACTCATCTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
67919041 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 9, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 54 0.53
47 29 0.29
48 1 0.01
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGT
Found at i:67925813 original size:23 final size:23
Alignment explanation
Indices: 67925787--67925833 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
67925777 TATTCTATTG
67925787 TCATGCCCATGCCATTACTATGC
1 TCATGCCCATGCCATTACTATGC
*** *
67925810 TCATTTTCATGCTATTACTATGC
1 TCATGCCCATGCCATTACTATGC
67925833 T
1 T
67925834 AATGTCATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.21, C:0.28, G:0.11, T:0.40
Consensus pattern (23 bp):
TCATGCCCATGCCATTACTATGC
Found at i:67927243 original size:24 final size:24
Alignment explanation
Indices: 67927185--67927243 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 24
67927175 GTTTAAAAAA
**
67927185 TTTTATTTATTATTTTATGTTTTTAC
1 TTTTATTT-TTATTTTATG-TACTAC
67927211 TTTTA-TTTTATTTTATG-ACTAC
1 TTTTATTTTTATTTTATGTACTAC
67927233 TTTTTATTTTT
1 -TTTTATTTTT
67927244 CTTTCATCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 3 0.10
23 5 0.17
24 14 0.48
25 2 0.07
26 5 0.17
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.73
Consensus pattern (24 bp):
TTTTATTTTTATTTTATGTACTAC
Found at i:67930310 original size:63 final size:64
Alignment explanation
Indices: 67930209--67930336 Score: 195
Period size: 63 Copynumber: 2.0 Consensus size: 64
67930199 ACATCGTGAC
* * *
67930209 AATAGTTAGTTTTAAGAACGATTCATTATAAATATTTAAAACCTGTCACGAAAATCACG-ATCA
1 AATAGTTAGTTTCAAGAACGATTAATTATAAATATTTAAAACCTATCACGAAAATCACGTATCA
* * *
67930272 AATAGTTAGTTTCAAGAACGATTAATTATAAATTTTTAAAACCTATCGCGAATATCACGTATCA
1 AATAGTTAGTTTCAAGAACGATTAATTATAAATATTTAAAACCTATCACGAAAATCACGTATCA
67930336 A
1 A
67930337 GTTTGTGGCG
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
63 53 0.91
64 5 0.09
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (64 bp):
AATAGTTAGTTTCAAGAACGATTAATTATAAATATTTAAAACCTATCACGAAAATCACGTATCA
Found at i:67933778 original size:27 final size:27
Alignment explanation
Indices: 67933748--67933925 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
67933738 ATATTGAGCC
* *
67933748 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
67933775 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
67933802 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
67933830 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
67933857 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
67933884 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
67933911 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67933926 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:67933887 original size:82 final size:81
Alignment explanation
Indices: 67933769--67933924 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
67933759 TGCTATATAA
* *
67933769 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
67933834 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
67933851 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
67933915 CACTTAGTGC
65 CACTTAGTGC
67933925 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67947643 original size:19 final size:20
Alignment explanation
Indices: 67947621--67947658 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
67947611 CTTCTAAATC
*
67947621 ATTTCATTGCAT-TTAGTTT
1 ATTTCATTACATATTAGTTT
67947640 ATTTCATTACATATTAGTT
1 ATTTCATTACATATTAGTT
67947659 GTTGATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.55
Consensus pattern (20 bp):
ATTTCATTACATATTAGTTT
Found at i:67956083 original size:40 final size:39
Alignment explanation
Indices: 67956046--67956229 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
67956036 GCTACTCGTT
*
67956046 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
* *
67956086 CAATTGCCTTCGGCACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGG-ACTTAGCCCGG-TTATAGTAACTCGCA
* * *
67956126 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * ** *
67956165 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCGCTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
67956206 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
67956230 ACATCATTCA
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
39 35 0.29
40 71 0.59
41 14 0.12
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:67956157 original size:79 final size:81
Alignment explanation
Indices: 67956046--67956230 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 81
67956036 GCTACTCGTT
* * * *
67956046 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGCA-CTTAACCC
1 CAAATGCCTTC-GGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGG-ATCTTAACCC
* *
67956109 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
67956126 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* **
67956190 ATATGGTCGCTTAGCA
66 ATATAGTAACTTAGCA
67956206 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
67956231 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:67964218 original size:79 final size:80
Alignment explanation
Indices: 67964135--67964291 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 80
67964125 AGCCCGGTTA
* * *
67964135 TAGTAACTCGCACAATTGCCTTCGGCA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGG-ATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTC
67964198 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
* ** * **
67964214 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCGCTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
67964279 GACTTAGCCCGGA
66 GACTTAGCCCGGA
67964292 CATCATTCAA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
78 1 0.02
79 46 0.70
80 19 0.29
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:67964224 original size:39 final size:40
Alignment explanation
Indices: 67964107--67964251 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 40
67964097 GCTACTCGTT
* * * *
67964107 CAAATGCCTTCGAAACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGAGCTTAGCCCGGAAT-TAGTAACTCGCA
* * *
67964147 CAATTGCCTTCGGCA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGG-AGCTTAGCCCGGAATTAGTAACTCGCA
*
67964187 CAAATGCCTTCGG-GCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGAGCTTAGCCCGGAATTAGTAACTCGCA
* *
67964226 CAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGAGCTTAGCCCGGA
67964252 TATGGTCGCT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
39 35 0.38
40 53 0.58
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGAGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:67967589 original size:27 final size:27
Alignment explanation
Indices: 67967565--67967827 Score: 269
Period size: 27 Copynumber: 9.7 Consensus size: 27
67967555 TTAGTTTACC
* **
67967565 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
67967592 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
67967619 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
67967646 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
67967673 AAATTGCCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
67967700 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
67967727 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
67967754 AAATTACTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** * * *
67967781 AAATTATTGAAATA-TCCTCAGCTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
67967808 AAATTACCAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
67967828 ATTTACAGAA
Statistics
Matches: 198, Mismatches: 36, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 4 0.02
27 191 0.96
28 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:67967697 original size:81 final size:80
Alignment explanation
Indices: 67967565--67967827 Score: 303
Period size: 81 Copynumber: 3.2 Consensus size: 80
67967555 TTAGTTTACC
* ** * *
67967565 AAATTACCAAAATACCCTTGGTTTACAAAATTATCAAAATACCCCTAGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TAAA
* *
67967630 ATACCCTTTGTTTATA
65 ATACCCTTAGTTTGTA
*
67967646 AAATTACCAAAATACCCCTGGTTTGTAAAATTGCCAAAATACCCCTGGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTAT-AAA
*
67967711 ATACCCCTAGTTTGTA
65 ATACCCTTAGTTTGTA
* * ** ** *
67967727 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATA-CCCTCGACTTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GGTTTGTAAAATTA-TAA
* * *
67967791 AATATCCTCAGCTTGTA
64 AATACCCTTAGTTTGTA
*
67967808 AAATTACCAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
67967828 ATTTACAGAA
Statistics
Matches: 157, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 5 0.03
81 151 0.96
82 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATAAAA
TACCCTTAGTTTGTA
Found at i:67967874 original size:81 final size:81
Alignment explanation
Indices: 67967722--67967875 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 81
67967712 TACCCCTAGT
** * **
67967722 TTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTCAGAAATTACTCAAATACCCTCGACTTACAAAATTA
**
67967787 TTGAAATATCCTCAGC
66 CCGAAATATCCTCAGC
* ** *
67967803 TTGTAAAATTACCAAAGTACCCCTGATTTACAG-AATTA-TCATTTTACCCTCGATTTACAAAAT
1 TTGTAAAATTACCAAAATACCCCTGATTT-CAGAAATTACTCA-AATACCCTCGACTTACAAAAT
67967866 TACCGAAATA
64 TACCGAAATA
67967876 CCCTTGTAGG
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
80 2 0.03
81 57 0.95
82 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCCCTGATTTCAGAAATTACTCAAATACCCTCGACTTACAAAATTA
CCGAAATATCCTCAGC
Found at i:67967899 original size:27 final size:27
Alignment explanation
Indices: 67967869--67968027 Score: 212
Period size: 27 Copynumber: 5.9 Consensus size: 27
67967859 ACAAAATTAC
*
67967869 CGAAATACCCTTGTAGGGTAGAAATAT
1 CGAAATACCCCTGTAGGGTAGAAATAT
* *
67967896 CGAAATACCCCTATAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAT
*
67967923 CGAAATACCCCTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAT
*
67967950 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAAATAT
* * *
67967977 TGAAATACCCCTATAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAAATAT
* * *
67968004 CGAGATACCCTTGTGGGGTA-AAAT
1 CGAAATACCCCTGTAGGGTAGAAAT
67968028 TACCAATTTA
Statistics
Matches: 118, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
26 3 0.03
27 115 0.97
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAAATAT
Found at i:67968042 original size:81 final size:81
Alignment explanation
Indices: 67967861--67968031 Score: 254
Period size: 81 Copynumber: 2.1 Consensus size: 81
67967851 CTCGATTTAC
*
67967861 AAAATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTATAGGGTAGAAATACCGA
1 AAAATTACCGAAATACCCCTGTAGGGTAGAAATATCGAAATACCCCTATAGGGTAGAAATACCGA
67967926 AATACCCCTGTAGGGT
66 AATACCCCTGTAGGGT
* * * *
67967942 AGAAA-TACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTATAGGGTAGAATTATCG
1 A-AAATTACCGAAATACCCCTGTAGGGTAGAAATATCGAAATACCCCTATAGGGTAGAAATACCG
* * *
67968006 AGATACCCTTGTGGGGT
65 AAATACCCCTGTAGGGT
67968023 AAAATTACC
1 AAAATTACC
67968032 AATTTACCCC
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 3 0.04
81 74 0.93
82 3 0.04
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
AAAATTACCGAAATACCCCTGTAGGGTAGAAATATCGAAATACCCCTATAGGGTAGAAATACCGA
AATACCCCTGTAGGGT
Found at i:67980050 original size:47 final size:47
Alignment explanation
Indices: 67979976--67980241 Score: 222
Period size: 47 Copynumber: 5.7 Consensus size: 47
67979966 TGGGTAAGGT
*
67979976 GCCGATGCCATGTTCCAGACATAGTCTTACACTGGCTCACATCTC-AA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCGAA
* * * * *
67980023 GTCGATGCCATATCCCAAACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTCGAA
* * * * * *
67980071 GTCGATG-CATGTCCTAGGCATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA
* * * * *
67980117 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCACTCGTCT-TAA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA
* * * * **
67980162 TGCCGATTCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 -GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACAT-CTCGAA
67980211 GCCGATG-CATGTCCCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGTCTTACACT
67980242 AGTTTACGCA
Statistics
Matches: 177, Mismatches: 35, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.01
46 71 0.40
47 74 0.42
48 30 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA
Found at i:67980236 original size:140 final size:141
Alignment explanation
Indices: 67979976--67980241 Score: 331
Period size: 140 Copynumber: 1.9 Consensus size: 141
67979966 TGGGTAAGGT
* * * *
67979976 GCCGATGCCATGTTCCAGACATAGTCTTACACTGGCTCACATCTCAAGTCGATGCCATATCCCAA
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCACACATCTCAAGCCGATGCCATATCCCAA
* * * *
67980041 ACATGGTCTTACACTGACTATCATCTCGTAGTCGATGCATGTCCTAGGCATGTCTTACACTGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
67980106 TACGTCTCGAG
131 TACGTCTCGAG
* * * * * *
67980117 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTTAATGCCGATTCCATGTCCCG
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCACACATCTCAA-GCCGATGCCATATCCCA
* * * *
67980180 GACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACT
65 AACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
67980242 AGTTTACGCA
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
139 19 0.18
140 78 0.74
141 8 0.08
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCACACATCTCAAGCCGATGCCATATCCCAA
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:67990432 original size:46 final size:46
Alignment explanation
Indices: 67990382--67990508 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 46
67990372 TCCAGGTTTC
* * * *
67990382 GAGTTCTTGCATATGTTGCGGACTTGAGAATATAAGAATAGGTTGT
1 GAGTTCTTACATATGTTGCAGACTTGAGAATACAAGAATAGGTTAT
* * *
67990428 GAGTTCTTACATATTTTACAAACTTGAGAATACAAGAATAGGTTAT
1 GAGTTCTTACATATGTTGCAGACTTGAGAATACAAGAATAGGTTAT
* * * *
67990474 GAGCTCCTATATATGTTGCAGACTCGAGAATACAA
1 GAGTTCTTACATATGTTGCAGACTTGAGAATACAA
67990509 AATTATTAAG
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (46 bp):
GAGTTCTTACATATGTTGCAGACTTGAGAATACAAGAATAGGTTAT
Found at i:67999429 original size:22 final size:22
Alignment explanation
Indices: 67999386--67999430 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
67999376 CCACCGCTGG
* * *
67999386 TTTGTAGATAAACTGTCGCTGA
1 TTTGCAGATAAACTGCCACTGA
*
67999408 TTTGCAGATAAATTGCCACTGA
1 TTTGCAGATAAACTGCCACTGA
67999430 T
1 T
67999431 AACATTGATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (22 bp):
TTTGCAGATAAACTGCCACTGA
Found at i:67999526 original size:50 final size:51
Alignment explanation
Indices: 67999404--67999529 Score: 132
Period size: 50 Copynumber: 2.5 Consensus size: 51
67999394 TAAACTGTCG
*
67999404 CTGATTTGCAGATAAATTGCCACTGATAACATTGATGTGGACAATCCACCA
1 CTGATTTGCAGATATATTGCCACTGATAACATTGATGTGGACAATCCACCA
* * * * * *
67999455 CTAATATGTAGATTTATTGCCACTGATTTA-ATT-ATGTGGACAAGT-CATCA
1 CTGATTTGCAGATATATTGCCACTGA-TAACATTGATGTGGACAA-TCCACCA
* *
67999505 TTGATTTGCAGATATACTGCCACTG
1 CTGATTTGCAGATATATTGCCACTG
67999530 CTTCCACCTT
Statistics
Matches: 60, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
50 33 0.55
51 25 0.42
52 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33
Consensus pattern (51 bp):
CTGATTTGCAGATATATTGCCACTGATAACATTGATGTGGACAATCCACCA
Found at i:68001257 original size:37 final size:37
Alignment explanation
Indices: 68001183--68001309 Score: 177
Period size: 37 Copynumber: 3.5 Consensus size: 37
68001173 AGTACACAAG
** * *
68001183 TAATCCAACTGA-AACACGCCAAACACTTATAAAAGC
1 TAATCCAACTGATAACACGCCAAATGCTCATAAGAGC
68001219 TAATCCAACTGATAACACGCCAAATGCTCATAAGAGC
1 TAATCCAACTGATAACACGCCAAATGCTCATAAGAGC
* *
68001256 TAATCCAACCGATAACACGCCTAATGCTCATAAGAGC
1 TAATCCAACTGATAACACGCCAAATGCTCATAAGAGC
68001293 TAATCCAA-TCGATAACA
1 TAATCCAACT-GATAACA
68001310 TGTTAAAAAT
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
36 12 0.15
37 70 0.85
ACGTcount: A:0.43, C:0.28, G:0.11, T:0.19
Consensus pattern (37 bp):
TAATCCAACTGATAACACGCCAAATGCTCATAAGAGC
Found at i:68003499 original size:15 final size:16
Alignment explanation
Indices: 68003479--68003511 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
68003469 TGGTATGGCT
68003479 AAGGAA-AGGGGAAGA
1 AAGGAATAGGGGAAGA
*
68003494 AAGGAATAGGTGAAGA
1 AAGGAATAGGGGAAGA
68003510 AA
1 AA
68003512 AATAGAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (16 bp):
AAGGAATAGGGGAAGA
Found at i:68011270 original size:43 final size:43
Alignment explanation
Indices: 68011129--68011275 Score: 156
Period size: 43 Copynumber: 3.4 Consensus size: 43
68011119 ACCGAGATGT
* * * *
68011129 GATTACATGTAAGACCTTGTGTGGGACAGTGGCATTGTATTGC
1 GATTACATGTAAGACCATGTGTGGGACAGTGACATCGTAATGC
68011172 GATTACATGTAAGACCATGTGTGGGACA-TCGACATCGTTAAT-C
1 GATTACATGTAAGACCATGTGTGGGACAGT-GACATCG-TAATGC
** * * *
68011215 GACTT-CGCGTAAGACCCTGTGTGGGACAGTGACATCGAAATGT
1 GA-TTACATGTAAGACCATGTGTGGGACAGTGACATCGTAATGC
*
68011258 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
68011276 ATCTAGGATA
Statistics
Matches: 85, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
42 5 0.06
43 74 0.87
44 6 0.07
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTGTGGGACAGTGACATCGTAATGC
Found at i:68024554 original size:46 final size:47
Alignment explanation
Indices: 68024489--68024705 Score: 289
Period size: 46 Copynumber: 4.7 Consensus size: 47
68024479 TTATCTTTGA
* * * * *
68024489 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
*
68024535 CATGTTGCCATGGTATCTTTCAACCATGGTCATATTC-TTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
68024581 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
** **
68024627 CATGCCGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* * *
68024673 CATGTTGTCATGGTATTTTTCAACTATGGTCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTT
68024706 CCATATTTCA
Statistics
Matches: 153, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
45 5 0.03
46 148 0.97
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.43
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
Found at i:68026531 original size:11 final size:11
Alignment explanation
Indices: 68026515--68026562 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
68026505 CTTTATATGC
68026515 TAATAAAATAA
1 TAATAAAATAA
*
68026526 TAATAAAATATC
1 TAATAAAATA-A
* *
68026538 TCATTAAAATAT
1 T-AATAAAATAA
68026550 TAATAAAATAA
1 TAATAAAATAA
68026561 TA
1 TA
68026563 TTTATCTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
11 20 0.67
12 2 0.07
13 8 0.27
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:68036286 original size:40 final size:40
Alignment explanation
Indices: 68036222--68036462 Score: 350
Period size: 40 Copynumber: 6.1 Consensus size: 40
68036212 GGGGTTTAGT
*
68036222 CGGATATAGCT-ACT-GCTCAAATGCCTTCGGGACTTAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
68036261 C-GATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGA-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
68036301 CGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
68036341 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
68036381 CGGATATAGTAACTCGCACCAATGCCTTCGGGACTT-GCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * * *
68036420 TGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
68036460 CGG
1 CGG
68036463 TTATCATCCA
Statistics
Matches: 186, Mismatches: 8, Indels: 15
0.89 0.04 0.07
Matches are distributed among these distances:
38 4 0.02
39 43 0.23
40 135 0.73
41 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:68041860 original size:28 final size:28
Alignment explanation
Indices: 68041820--68041875 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
68041810 GGTCGGCTGA
68041820 CCCGCACTTGTAACAGGAGCGGTCATGG
1 CCCGCACTTGTAACAGGAGCGGTCATGG
68041848 CCCGCACTTGTAACAGGAGCGGTCATGG
1 CCCGCACTTGTAACAGGAGCGGTCATGG
68041876 AATCTACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.18
Consensus pattern (28 bp):
CCCGCACTTGTAACAGGAGCGGTCATGG
Found at i:68044488 original size:40 final size:40
Alignment explanation
Indices: 68044405--68044660 Score: 299
Period size: 40 Copynumber: 6.5 Consensus size: 40
68044395 CAACCAAGTA
** *
68044405 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
68044443 CCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68044483 CCTTCGGGACTTAGCTCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
*
68044523 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * * * *
68044563 CCTTCGTTAATTAGCCTGGATATAGTAACTTGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
68044603 CCTTCGGGACTT-GCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
68044642 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68044661 TTATCATCCA
Statistics
Matches: 186, Mismatches: 25, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
38 13 0.07
39 46 0.25
40 125 0.67
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68054997 original size:48 final size:48
Alignment explanation
Indices: 68054889--68054982 Score: 143
Period size: 48 Copynumber: 2.0 Consensus size: 48
68054879 CCATACTATG
* * *
68054889 AGAGCCAGTGTAAGACCATGTCTGGGACTTGGTATCGGCATTGAGACT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACT
* *
68054937 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA
68054983 TGTGAGCCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (48 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACT
Found at i:68055130 original size:49 final size:50
Alignment explanation
Indices: 68055012--68055139 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 50
68055002 GATCTGTCAG
* *
68055012 TGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAGAGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGCCACGAATATGCGAGAGCTAA
* * * * * *
68055062 TGTATGACCTTGTCTGGGACATGGCGTCAGCCTCG-AT-TGCGATAG-TCGA
1 TGTAAGACCATGTCTGGGACATGGCATC-GCCACGAATATGCGAGAGCT-AA
*
68055111 TGTAAGACCATGTCTGGGACGTGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
68055140 ACTTGATGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
48 2 0.03
49 31 0.48
50 27 0.42
51 4 0.06
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATCGCCACGAATATGCGAGAGCTAA
Found at i:68056943 original size:19 final size:19
Alignment explanation
Indices: 68056919--68056972 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
68056909 CATGTCTAAG
68056919 CCACATGGGCGTGTGAAAC
1 CCACATGGGCGTGTGAAAC
68056938 CCACATGGGCGTGTGAAAC
1 CCACATGGGCGTGTGAAAC
*
68056957 CCACACGGGCGTGTGA
1 CCACATGGGCGTGTGA
68056973 CTCTCTAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.24, C:0.28, G:0.33, T:0.15
Consensus pattern (19 bp):
CCACATGGGCGTGTGAAAC
Found at i:68059290 original size:16 final size:16
Alignment explanation
Indices: 68059269--68059304 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
68059259 ACACAAATTC
* *
68059269 TCTTCTTTTTTCTTCT
1 TCTTCTTCTCTCTTCT
68059285 TCTTCTTCTCTCTTCT
1 TCTTCTTCTCTCTTCT
68059301 TCTT
1 TCTT
68059305 TTATTGGGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TCTTCTTCTCTCTTCT
Found at i:68061752 original size:20 final size:20
Alignment explanation
Indices: 68061727--68061766 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
68061717 CGGAAAATAA
68061727 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
68061747 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
68061767 GAAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:68061756 original size:34 final size:33
Alignment explanation
Indices: 68061712--68061776 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
68061702 CAGTAAAATG
68061712 TTTTCCGGAAAATAATTT-CTGGAAAATGATTTAC
1 TTTTCCGGAAAATAATTTACT-GAAAAT-ATTTAC
* *
68061746 TTTTCTGGAAAATGATTTACTGAAAATATTT
1 TTTTCCGGAAAATAATTTACTGAAAATATTT
68061777 TCTGGTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 4 0.14
34 22 0.79
35 2 0.07
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (33 bp):
TTTTCCGGAAAATAATTTACTGAAAATATTTAC
Found at i:68061887 original size:20 final size:20
Alignment explanation
Indices: 68061864--68061902 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
68061854 ATTTTTACAT
68061864 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
68061884 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
68061903 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:68079978 original size:24 final size:24
Alignment explanation
Indices: 68079951--68079997 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
68079941 GGAAAATGCC
* *
68079951 TGCAAAAGAGAGAGAGAGAGAGAT
1 TGCAAAAGAAAGAGAGAAAGAGAT
**
68079975 TGCATGAGAAAGAGAGAAAGAGA
1 TGCAAAAGAAAGAGAGAAAGAGA
68079998 AGGAGAAAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.51, C:0.04, G:0.36, T:0.09
Consensus pattern (24 bp):
TGCAAAAGAAAGAGAGAAAGAGAT
Found at i:68092946 original size:14 final size:14
Alignment explanation
Indices: 68092927--68092956 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
68092917 TCAGAACCAT
68092927 ACCCAAGTTTCCTA
1 ACCCAAGTTTCCTA
68092941 ACCCAAGTTTCCTA
1 ACCCAAGTTTCCTA
68092955 AC
1 AC
68092957 TTAGCAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.37, G:0.07, T:0.27
Consensus pattern (14 bp):
ACCCAAGTTTCCTA
Found at i:68093899 original size:27 final size:27
Alignment explanation
Indices: 68093846--68093900 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
68093836 ATACATACAT
* *
68093846 GTTGTGCCTACCTGACAGGCTCAACTA
1 GTTGAGCCTACCTGACAGGCACAACTA
* *
68093873 GTTGAGCCTATCTGACAGGCACGACTA
1 GTTGAGCCTACCTGACAGGCACAACTA
68093900 G
1 G
68093901 GTGCATAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (27 bp):
GTTGAGCCTACCTGACAGGCACAACTA
Found at i:68094804 original size:22 final size:22
Alignment explanation
Indices: 68094770--68094833 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
68094760 TCAACATTTT
*
68094770 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
68094792 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
68094813 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
68094834 CATTAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:68094827 original size:15 final size:16
Alignment explanation
Indices: 68094807--68094838 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
68094797 ATATATAATA
68094807 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
68094822 ATATAAAAATTACATT
1 ATATAAAAATTACATT
68094838 A
1 A
68094839 AAAATCACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:68095133 original size:115 final size:115
Alignment explanation
Indices: 68094895--68095331 Score: 673
Period size: 115 Copynumber: 3.9 Consensus size: 115
68094885 ATACTAACAC
* * * *
68094895 AAAATAGCTATAAAATTATTTTTTT-AAATACATTACTAAAAAAAATCACAATACATTAATACAC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTCACAATACACTAATACAC
68094959 ---A-CACTAAAACACTAACAA--TATATAACCTAATCTTAAATTACTAAT
66 TAAACCACT-AAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
68095004 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTCACAATACACTAATACAC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTCACAATACACTAATACAC
*
68095069 TAAACCACTAAACACTAATAATTTATATAACCTAATCTTAAATTACTAAT
66 TAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
68095119 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACT-AAAAAATT-ACAATACGCTAAT--AC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTCACAATACACTAATACAC
*
68095180 TAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTATTAAT
66 TAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
68095230 AAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAA-TCACAACACACTAATACA
1 AAAATAGCTATAAAAATA-TTTTTTTAAAATATATTACTAAAAAAATTCACAATACACTAATACA
* *
68095294 CTAAACTACTAAACACTAACAATTTATATAACCAAATC
65 CTAAACCACTAAACACTAACAATTTATATAACCTAATC
68095332 AACTATAAAT
Statistics
Matches: 303, Mismatches: 13, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
109 24 0.08
110 36 0.12
111 67 0.22
112 21 0.07
113 41 0.14
114 12 0.04
115 102 0.34
ACGTcount: A:0.51, C:0.15, G:0.01, T:0.32
Consensus pattern (115 bp):
AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTCACAATACACTAATACAC
TAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:68095243 original size:226 final size:223
Alignment explanation
Indices: 68094895--68095331 Score: 682
Period size: 226 Copynumber: 1.9 Consensus size: 223
68094885 ATACTAACAC
* * *
68094895 AAAATAGCTATAAAATTATTTTTTTAAATACATTACTAAAAAAAATCACAATACATTAATACACA
1 AAAATAGCTATAAAAATATTTTTTTAAATACATTACT-AAAAAAATCACAATACACTAATACAAA
68094960 CACTAAAACACTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATA-TT
65 CACTAAAACACTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATATTT
* *
68095024 TTTTTAAAATATATTACTAAAAAAATTCACAATACACTAATACACTAAACCACTAAACACTAATA
130 TTTTTAAAATATATTACTAAAAAAA-TCACAACACACTAATACACTAAACCACTAAACACTAACA
*
68095089 ATTTATATAACCTAATCTTAAATTACTAAT
194 ATTTATATAACCAAATCTTAAATTACTAAT
* * *
68095119 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACT-AAAAAATTACAATACGCTAATACTAA
1 AAAATAGCTATAAAAATATTTTTTT-AAATACATTACTAAAAAAATCACAATACACTAATAC-AA
* *
68095183 ACCACT-AAACACTAACAATTTATATAACCTAATCTTAAATTATTAATAAAATAGCTATAAAATT
64 A-CACTAAAACACTAACAA--TATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAAT
*
68095247 ATTTTTTTTAAAATATATTACTAAAAAAATCACAACACACTAATACACTAAACTACTAAACACTA
126 ATTTTTTTTAAAATATATTACTAAAAAAATCACAACACACTAATACACTAAACCACTAAACACTA
68095312 ACAATTTATATAACCAAATC
191 ACAATTTATATAACCAAATC
68095332 AACTATAAAT
Statistics
Matches: 195, Mismatches: 12, Indels: 10
0.90 0.06 0.05
Matches are distributed among these distances:
223 20 0.10
224 38 0.19
225 15 0.08
226 95 0.49
227 27 0.14
ACGTcount: A:0.51, C:0.15, G:0.01, T:0.32
Consensus pattern (223 bp):
AAAATAGCTATAAAAATATTTTTTTAAATACATTACTAAAAAAATCACAATACACTAATACAAAC
ACTAAAACACTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATATTTT
TTTTAAAATATATTACTAAAAAAATCACAACACACTAATACACTAAACCACTAAACACTAACAAT
TTATATAACCAAATCTTAAATTACTAAT
Found at i:68095606 original size:3 final size:3
Alignment explanation
Indices: 68095600--68095635 Score: 54
Period size: 3 Copynumber: 11.3 Consensus size: 3
68095590 TACCTTTTTT
68095600 TTC TTC TTC TTCC TTC TTC TTC TTTC TTC TTC TTC T
1 TTC TTC TTC TT-C TTC TTC TTC -TTC TTC TTC TTC T
68095636 CCTCCTTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 25 0.81
4 6 0.19
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:68095617 original size:10 final size:10
Alignment explanation
Indices: 68095602--68095635 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
68095592 CCTTTTTTTT
68095602 CTTCTTCTTC
1 CTTCTTCTTC
68095612 CTTCTTCTTC
1 CTTCTTCTTC
*
68095622 TTTCTTCTT-
1 CTTCTTCTTC
68095631 CTTCT
1 CTTCT
68095636 CCTCCTTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (10 bp):
CTTCTTCTTC
Found at i:68095618 original size:13 final size:13
Alignment explanation
Indices: 68095600--68095635 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
68095590 TACCTTTTTT
68095600 TTCTTCTTCTTCC
1 TTCTTCTTCTTCC
*
68095613 TTCTTCTTCTTTC
1 TTCTTCTTCTTCC
68095626 TTCTTCTTCT
1 TTCTTCTTCT
68095636 CCTCCTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (13 bp):
TTCTTCTTCTTCC
Found at i:68096779 original size:16 final size:18
Alignment explanation
Indices: 68096745--68096785 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
68096735 AAACATTTAT
68096745 AAATATATTATAAATATA
1 AAATATATTATAAATATA
* * *
68096763 AAATGTATTAAAAATAAA
1 AAATATATTATAAATATA
68096781 AAATA
1 AAATA
68096786 AAAATTTAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
AAATATATTATAAATATA
Found at i:68097308 original size:27 final size:27
Alignment explanation
Indices: 68097255--68097318 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
68097245 AATTTTGTTA
68097255 TAATATTTT-TAAAAGTTTAGAATTTT
1 TAATATTTTATAAAAGTTTAGAATTTT
**
68097281 TAATATTTTATAACAA-TTTATCATTTT
1 TAATATTTTATAA-AAGTTTAGAATTTT
68097308 TAA-ATTTTATA
1 TAATATTTTATA
68097319 GTATTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 17 0.50
27 15 0.44
28 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (27 bp):
TAATATTTTATAAAAGTTTAGAATTTT
Found at i:68101802 original size:21 final size:21
Alignment explanation
Indices: 68101772--68101826 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
68101762 GTGGTCTAAG
*
68101772 GGACACGCCCGTGTGACCCTA
1 GGACATGCCCGTGTGACCCTA
*
68101793 GGACATGCCCGTGTGACCCTG
1 GGACATGCCCGTGTGACCCTA
*
68101814 GGACATACCCGTG
1 GGACATGCCCGTG
68101827 CTGCAGGCCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (21 bp):
GGACATGCCCGTGTGACCCTA
Found at i:68109046 original size:40 final size:40
Alignment explanation
Indices: 68108948--68109210 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
68108938 TCCTCGTTCA
* * * * * *
68108948 AATGCCTTCGGCACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68108987 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68109027 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68109067 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68109107 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
68109147 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
68109187 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68109211 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 36 0.18
40 155 0.78
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68109219 original size:41 final size:41
Alignment explanation
Indices: 68109142--68109219 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
68109132 TTAGTATCTC
* * *
68109142 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
68109183 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
68109220 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:68116989 original size:40 final size:40
Alignment explanation
Indices: 68116891--68117153 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
68116881 TCCTCGTTCA
* * * * * *
68116891 AATGCCTTCGGCACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68116930 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68116970 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68117010 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68117050 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
68117090 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
68117130 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68117154 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 36 0.18
40 155 0.78
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68117162 original size:41 final size:41
Alignment explanation
Indices: 68117085--68117162 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
68117075 TTAGTATCTC
* * *
68117085 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
68117126 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
68117163 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:68125391 original size:23 final size:23
Alignment explanation
Indices: 68125365--68125417 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
68125355 ATTATTCAGT
68125365 GACATCTCCTCTATAAATTCATA
1 GACATCTCCTCTATAAATTCATA
68125388 GACATCTCCTCTATAAATTCATA
1 GACATCTCCTCTATAAATTCATA
68125411 GACATCT
1 GACATCT
68125418 TTAGGTGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (23 bp):
GACATCTCCTCTATAAATTCATA
Found at i:68127716 original size:16 final size:16
Alignment explanation
Indices: 68127695--68127727 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68127685 GCAGGGGATA
68127695 AAAATATGTACAAATT
1 AAAATATGTACAAATT
68127711 AAAATATGTACAAATT
1 AAAATATGTACAAATT
68127727 A
1 A
68127728 CGGTTTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (16 bp):
AAAATATGTACAAATT
Found at i:68150612 original size:40 final size:39
Alignment explanation
Indices: 68150392--68150604 Score: 293
Period size: 39 Copynumber: 5.4 Consensus size: 39
68150382 TCCTCGTTCA
* * * * *
68150392 AATGCCTTCGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
* *
68150430 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
68150470 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
68150509 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68150548 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
*
68150588 AAGGCCTTCGGATCTTA
1 AATGCCTTCGGA-CTTA
68150605 GTCCGGATAT
Statistics
Matches: 160, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
38 9 0.06
39 103 0.64
40 48 0.30
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68150660 original size:41 final size:41
Alignment explanation
Indices: 68150583--68150660 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
68150573 TTAGTATCTC
* * *
68150583 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
68150624 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
68150661 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:68158859 original size:23 final size:23
Alignment explanation
Indices: 68158833--68158885 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
68158823 ATTATTCAGT
68158833 GACATCTCCTCTATAAATTCATA
1 GACATCTCCTCTATAAATTCATA
68158856 GACATCTCCTCTATAAATTCATA
1 GACATCTCCTCTATAAATTCATA
68158879 GACATCT
1 GACATCT
68158886 TTAGGTGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (23 bp):
GACATCTCCTCTATAAATTCATA
Found at i:68161185 original size:16 final size:16
Alignment explanation
Indices: 68161164--68161196 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68161154 GCAGGGGATA
68161164 AAAATATGTACAAATT
1 AAAATATGTACAAATT
68161180 AAAATATGTACAAATT
1 AAAATATGTACAAATT
68161196 A
1 A
68161197 CGGTTTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (16 bp):
AAAATATGTACAAATT
Found at i:68169892 original size:40 final size:40
Alignment explanation
Indices: 68169828--68169920 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 40
68169818 ACTATGTTCA
*
68169828 GCACTAAGTGTGCGGTTCGAAATAGCTTCAGCTACA-AATG
1 GCACTAAGTGTGCAGTTCGAAATAGCTTCAGCTACATAA-G
* * * * *
68169868 GCACTAAGTGTGCAAGTT-GGAATAGGTTCGGCTATATGAG
1 GCACTAAGTGTGC-AGTTCGAAATAGCTTCAGCTACATAAG
68169908 GCACTAAGTGTGC
1 GCACTAAGTGTGC
68169921 GATACCAAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 41 0.91
41 4 0.09
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (40 bp):
GCACTAAGTGTGCAGTTCGAAATAGCTTCAGCTACATAAG
Found at i:68176775 original size:55 final size:53
Alignment explanation
Indices: 68176642--68176839 Score: 211
Period size: 55 Copynumber: 3.7 Consensus size: 53
68176632 AACTTACTAT
*
68176642 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
* * * * *
68176695 TGCCATGCCTTGGCATGGTCTTACATGGGA-CATTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATC-CTTGCCTTAT-G-AACTCACCAA
*** *
68176750 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA
* * *
68176804 TTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
68176840 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
52 1 0.01
53 39 0.32
54 8 0.07
55 72 0.60
56 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
Found at i:68181064 original size:48 final size:48
Alignment explanation
Indices: 68180989--68181216 Score: 222
Period size: 48 Copynumber: 4.9 Consensus size: 48
68180979 CACATGGGAG
* * *
68180989 GATGCCAATGCCATATCCTGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
**
68181037 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCATC-GGTC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCA-CATATC
* *
68181085 GATGACAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
* * * ** *
68181133 GAT----AT-CGATAG-CCCAG-CTATGGTCTTACACGAAATTACATATC
1 GATGCCAATGCCAT-GTCCTAGAC-ATGGTCTTACATGGGATCACATATC
* *
68181176 GATGCCAAAGCCATGTCTTAGACATGGT-TTAACATGGGATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTT-ACATGGGATC
68181217 GTACATAACC
Statistics
Matches: 146, Mismatches: 22, Indels: 24
0.76 0.11 0.12
Matches are distributed among these distances:
42 1 0.01
43 32 0.22
44 3 0.02
47 5 0.03
48 103 0.71
49 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
Found at i:68186369 original size:48 final size:48
Alignment explanation
Indices: 68186218--68186391 Score: 165
Period size: 48 Copynumber: 3.6 Consensus size: 48
68186208 TGATTTGTGT
* ** * * *
68186218 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCAC-AGCAT-GA-GA
1 GCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAG-ATATACAA
* * **
68186264 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATTTAA
1 GCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* *
68186312 GCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATATACAA
1 GCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * *
68186360 GCTATTGTAAGGCCTGTCTAGGACATGGCATC
1 GCTAATGTAAGACATGTCTGGGACAT-GCATC
68186392 AGCTTGTGGT
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
46 35 0.33
47 2 0.02
48 64 0.60
49 5 0.05
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
Found at i:68186768 original size:31 final size:31
Alignment explanation
Indices: 68186730--68186791 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
68186720 AGTAAGTTGT
68186730 ACTTGCGTTTATTTATGCTATTCATGAATAA
1 ACTTGCGTTTATTTATGCTATTCATGAATAA
68186761 ACTTGCGTTTATTTATGCTATTCATGAATAA
1 ACTTGCGTTTATTTATGCTATTCATGAATAA
68186792 TCTATGAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (31 bp):
ACTTGCGTTTATTTATGCTATTCATGAATAA
Found at i:68190207 original size:39 final size:39
Alignment explanation
Indices: 68190090--68190348 Score: 293
Period size: 39 Copynumber: 6.6 Consensus size: 39
68190080 GCTCCTCGTT
* *
68190090 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
68190130 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
68190170 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
68190209 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCT-GCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
68190247 CAAATGCCTTC-GG-TTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * * *
68190284 CAAATACCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
68190325 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
68190349 CATCATTCAA
Statistics
Matches: 196, Mismatches: 13, Indels: 21
0.85 0.06 0.09
Matches are distributed among these distances:
36 20 0.10
37 15 0.08
38 15 0.08
39 75 0.38
40 60 0.31
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:68190280 original size:75 final size:79
Alignment explanation
Indices: 68190090--68190348 Score: 295
Period size: 79 Copynumber: 3.3 Consensus size: 79
68190080 GCTCCTCGTT
* *
68190090 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
*
68190153 GGATTTAGTAACTCGCA
63 GGAATTAGTAACTCGCA
*
68190170 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
68190234 ATTAGTATCT-GCA
66 ATTAGTAACTCGCA
* **
68190247 CAAATGCCTTC-GG-TTAGCCCGGAATTAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
68190309 ATATT-GTCACTTAGCA
65 A-ATTAGTAAC-TCGCA
68190325 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
68190349 CATCATTCAA
Statistics
Matches: 160, Mismatches: 9, Indels: 21
0.84 0.05 0.11
Matches are distributed among these distances:
74 2 0.01
75 34 0.21
76 21 0.13
77 22 0.14
78 24 0.15
79 42 0.26
80 15 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:68193679 original size:29 final size:30
Alignment explanation
Indices: 68193631--68193687 Score: 107
Period size: 29 Copynumber: 1.9 Consensus size: 30
68193621 TCATCAAAAT
68193631 TTTGAGACTTTTGTGATCCGAAAATACAAA
1 TTTGAGACTTTTGTGATCCGAAAATACAAA
68193661 TTTGAGAC-TTTGTGATCCGAAAATACA
1 TTTGAGACTTTTGTGATCCGAAAATACA
68193688 TGGCACTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
29 19 0.70
30 8 0.30
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (30 bp):
TTTGAGACTTTTGTGATCCGAAAATACAAA
Found at i:68198185 original size:40 final size:40
Alignment explanation
Indices: 68198141--68198402 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
68198131 GCTCCTCGTT
* *
68198141 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
68198181 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68198221 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68198260 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
68198299 CAAATGCCTTCGGG-TTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
68198338 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
68198379 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68198403 CATCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 126 0.63
40 62 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:68208819 original size:43 final size:43
Alignment explanation
Indices: 68208746--68208935 Score: 256
Period size: 43 Copynumber: 4.4 Consensus size: 43
68208736 ATGCCAAGAT
* * * * * *
68208746 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCATATAACAATGCCAATGTCCCAAAC
* *
68208789 ATGGTCTTACACGAAATCATATAACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCATATAACAATGCCAATGTCCCAAAC
*
68208832 ATGGTCTTACACGTAATCATATAACGATGCCAATGTCCCAAAC
1 ATGGTCTTACACGTAATCATATAACAATGCCAATGTCCCAAAC
* *
68208875 ATGGTCTTACACGTAATCACA-ATACAATGACAATGTCCCAAAC
1 ATGGTCTTACACGTAATCATATA-ACAATGCCAATGTCCCAAAC
*
68208918 ATGGTCTTACATGTAATC
1 ATGGTCTTACACGTAATC
68208936 TCATCTCGAT
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
42 1 0.01
43 132 0.99
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCATATAACAATGCCAATGTCCCAAAC
Found at i:68208865 original size:86 final size:86
Alignment explanation
Indices: 68208746--68208935 Score: 283
Period size: 86 Copynumber: 2.2 Consensus size: 86
68208736 ATGCCAAGAT
* * * *
68208746 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCA-TA
1 ATGGTCTTACATGTAATCACATAACGATGCCAATGTCCCAAACATGGTCTTACACGAAATCACAA
* *
68208810 TAACAATGCCAATGTCCCAGAC
66 T-ACAATGACAATGTCCCAAAC
* * *
68208832 ATGGTCTTACACGTAATCATATAACGATGCCAATGTCCCAAACATGGTCTTACACGTAATCACAA
1 ATGGTCTTACATGTAATCACATAACGATGCCAATGTCCCAAACATGGTCTTACACGAAATCACAA
68208897 TACAATGACAATGTCCCAAAC
66 TACAATGACAATGTCCCAAAC
68208918 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
68208936 TCATCTCGAT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
86 91 0.98
87 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (86 bp):
ATGGTCTTACATGTAATCACATAACGATGCCAATGTCCCAAACATGGTCTTACACGAAATCACAA
TACAATGACAATGTCCCAAAC
Found at i:68213553 original size:38 final size:38
Alignment explanation
Indices: 68213494--68213568 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
68213484 GTATTTGGGT
* * *
68213494 TAAATCCCGCTGGCTTCGTGCTGGTATTATATCCGGGA
1 TAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGGGA
*
68213532 TAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGGG
68213569 CCTTCGTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.31
Consensus pattern (38 bp):
TAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGGGA
Found at i:68213684 original size:43 final size:43
Alignment explanation
Indices: 68213540--68213686 Score: 199
Period size: 43 Copynumber: 3.5 Consensus size: 43
68213530 GATAAATCCC
* * *
68213540 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
68213581 GCAGGCTTAGTGCCGATGATGTGTATTCGAGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
68213624 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
68213667 GCAGGATTCGTGACGGTGAT
1 GCAGGCTTAGTGCCGGTGAT
68213687 TGGATATGTG
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
41 14 0.15
42 2 0.02
43 77 0.83
ACGTcount: A:0.15, C:0.22, G:0.33, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:68213964 original size:43 final size:43
Alignment explanation
Indices: 68213916--68214126 Score: 361
Period size: 43 Copynumber: 4.9 Consensus size: 43
68213906 GCTGGTATTA
68213916 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
68213959 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
*
68214002 TATTCAGGCCTTCGTGCCTAGCAGGCTTCA-TGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTT-AGTGCCGGTGATGTG
*
68214045 TATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
68214088 TATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
68214127 AATGATATGT
Statistics
Matches: 159, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
43 158 0.99
44 1 0.01
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:68213990 original size:355 final size:355
Alignment explanation
Indices: 68213332--68214041 Score: 1269
Period size: 355 Copynumber: 2.0 Consensus size: 355
68213322 AATGGTGAAA
*
68213332 TGGATAAGTGATATTTATGAATGACTTTTGAACCGAAATGTAAACGATGGTGTTCATATGGAGCT
1 TGGATAAGTGATATTTATGAATGAATTTTGAACCGAAATGTAAACGATGGTGTTCATATGGAGCT
68213397 TATACCCGAATGTTGCAAATGACTACGAATGTGATATGTTGAATGAGATGTATTAATATATGATT
66 TATACCCGAATGTTGCAAATGACTACGAATGTGATATGTTGAATGAGATGTATTAATATATGATT
* *
68213462 AAATATGTATGATATTTGATGTGTATTTGGGTTAAATCCCGCTGGCTTCGTGCTGGTATTATATC
131 AAATATGCATGATATTTGATGTGTATTGGGGTTAAATCCCGCTGGCTTCGTGCTGGTATTATATC
*
68213527 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCAGGCTTAGT
196 CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCAGGCTTAGT
*
68213592 GCCGATGATGTGTATTCGAGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCC
261 GCCGATGATGTGTATTCGAGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCAGGCC
* *
68213657 TTTGTGCCTAGCAGGATTCGTGACGGTGAT
326 TTCGTGCCTAGCAGGATTCATGACGGTGAT
*
68213687 TGGATATGTGATATTTATGAATGAATTTTGAACCGAAATGTAAACGATGGTGTTCATATGGAGCT
1 TGGATAAGTGATATTTATGAATGAATTTTGAACCGAAATGTAAACGATGGTGTTCATATGGAGCT
* *
68213752 TATACCTGAATGTTGCAAATGACTACGAATGTGATATGTTGAATGAGATGTATTAGTATATGATT
66 TATACCCGAATGTTGCAAATGACTACGAATGTGATATGTTGAATGAGATGTATTAATATATGATT
68213817 AAATATGCATGATATTTGATGTGTATTGGGGTTAAATCCCG-TGGGCTTCGTGCTGGTATTATAT
131 AAATATGCATGATATTTGATGTGTATTGGGGTTAAATCCCGCT-GGCTTCGTGCTGGTATTATAT
*
68213881 CCGGGATAAATCCCACAGTCCTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCAGGCTTAG
195 CCGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCAGGCTTAG
* *
68213946 TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCAGGC
260 TGCCGATGATGTGTATTCGAGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCAGGC
* *
68214011 CTTCGTGCCTAGCAGGCTTCATGCCGGTGAT
325 CTTCGTGCCTAGCAGGATTCATGACGGTGAT
68214042 GTGTATTCGG
Statistics
Matches: 339, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
354 1 0.00
355 338 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.34
Consensus pattern (355 bp):
TGGATAAGTGATATTTATGAATGAATTTTGAACCGAAATGTAAACGATGGTGTTCATATGGAGCT
TATACCCGAATGTTGCAAATGACTACGAATGTGATATGTTGAATGAGATGTATTAATATATGATT
AAATATGCATGATATTTGATGTGTATTGGGGTTAAATCCCGCTGGCTTCGTGCTGGTATTATATC
CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCAGGCTTAGT
GCCGATGATGTGTATTCGAGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCAGGCC
TTCGTGCCTAGCAGGATTCATGACGGTGAT
Found at i:68220263 original size:34 final size:34
Alignment explanation
Indices: 68220220--68220317 Score: 169
Period size: 34 Copynumber: 2.9 Consensus size: 34
68220210 TGCATATTCT
68220220 GCTGCTACTGTTACTGAAATGGGCTCAGGCCCAG
1 GCTGCTACTGTTACTGAAATGGGCTCAGGCCCAG
68220254 GCTGCTACTGTTACTGAAATGGGCTCAGGCCCAG
1 GCTGCTACTGTTACTGAAATGGGCTCAGGCCCAG
* * *
68220288 ACTGCTACTGTTAATGAAATGGGCTAAGGC
1 GCTGCTACTGTTACTGAAATGGGCTCAGGC
68220318 TTTAATTGAG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 61 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (34 bp):
GCTGCTACTGTTACTGAAATGGGCTCAGGCCCAG
Found at i:68221390 original size:8 final size:8
Alignment explanation
Indices: 68221377--68221407 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
68221367 TTTGAAACCT
68221377 AAAAATCC
1 AAAAATCC
68221385 AAAAATCC
1 AAAAATCC
68221393 AAAAATCC
1 AAAAATCC
*
68221401 AGAAATC
1 AAAAATC
68221408 TTGAATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.61, C:0.23, G:0.03, T:0.13
Consensus pattern (8 bp):
AAAAATCC
Found at i:68222529 original size:16 final size:16
Alignment explanation
Indices: 68222510--68222545 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
68222500 GGCAAAAGCT
*
68222510 GAAATGCCGAAAAGTC
1 GAAATACCGAAAAGTC
*
68222526 GAAATACCGAAAAGTT
1 GAAATACCGAAAAGTC
68222542 GAAA
1 GAAA
68222546 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.22, T:0.14
Consensus pattern (16 bp):
GAAATACCGAAAAGTC
Found at i:68222686 original size:18 final size:19
Alignment explanation
Indices: 68222653--68222688 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
68222643 ATTTGGCCAT
68222653 ATGGGCCGAAATGGGCTAA
1 ATGGGCCGAAATGGGCTAA
*
68222672 ATGGGCC-AGATGGGCTA
1 ATGGGCCGAAATGGGCTA
68222689 TTGGGCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.28, C:0.17, G:0.39, T:0.17
Consensus pattern (19 bp):
ATGGGCCGAAATGGGCTAA
Found at i:68222810 original size:29 final size:29
Alignment explanation
Indices: 68222760--68222875 Score: 130
Period size: 29 Copynumber: 4.0 Consensus size: 29
68222750 CATGAATATG
*
68222760 AATGTGATTGGGCCTAACGGGCCATATA-
1 AATGTGATTGGGCCTAATGGGCCATATAC
*
68222788 AATGTGATCTGGGACTAATGGGCCATATAC
1 AATGTGAT-TGGGCCTAATGGGCCATATAC
* *
68222818 AA-GTGATTTGGGCCTAATGGGTCATA-AG
1 AATGTGA-TTGGGCCTAATGGGCCATATAC
* * *
68222846 AATATGATTGGGCTTAATGGGCCAGATAC
1 AATGTGATTGGGCCTAATGGGCCATATAC
68222875 A
1 A
68222876 GGTATGTGAA
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
28 27 0.37
29 43 0.59
30 3 0.04
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
AATGTGATTGGGCCTAATGGGCCATATAC
Found at i:68222864 original size:57 final size:57
Alignment explanation
Indices: 68222763--68222875 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 57
68222753 GAATATGAAT
* *
68222763 GTGATTGGGCCTAACGGGCCATATAAATGTGATCTGGGACTAATGGGCCATATACAA
1 GTGATTGGGCCTAACGGGCCATATAAATATGATCTGGGACTAATGGGCCAGATACAA
* *
68222820 GTGATTTGGGCCTAATGGGTCATA-AGAATATGAT-TGGG-CTTAATGGGCCAGATACA
1 GTGA-TTGGGCCTAACGGGCCATATA-AATATGATCTGGGAC-TAATGGGCCAGATACA
68222876 GGTATGTGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
56 1 0.02
57 24 0.49
58 24 0.49
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (57 bp):
GTGATTGGGCCTAACGGGCCATATAAATATGATCTGGGACTAATGGGCCAGATACAA
Found at i:68227152 original size:28 final size:29
Alignment explanation
Indices: 68227112--68227221 Score: 127
Period size: 29 Copynumber: 3.9 Consensus size: 29
68227102 GTGAGCATGA
* *
68227112 ATATGAATGTGA-TTGAGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
68227140 ATATAAATGTGATTTGGGCCTAATAGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
68227169 ATATACAGGTGATTTGGGCC-AATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
68227197 ATATGAATATGA-TTGGGCTTAATGG
1 ATATAAATGTGATTTGGGCCTAATGG
68227222 CCAGATACAG
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 6 0.09
28 31 0.45
29 32 0.46
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:68230103 original size:16 final size:16
Alignment explanation
Indices: 68230082--68230120 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
68230072 GTTGTAACGC
*
68230082 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCAAAA
68230098 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
*
68230114 TCCAAAA
1 CCCAAAA
68230121 GTTAGGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.54, C:0.36, G:0.03, T:0.08
Consensus pattern (16 bp):
CCCAAAAATCCCAAAA
Found at i:68231245 original size:16 final size:16
Alignment explanation
Indices: 68231224--68231266 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
68231214 ATGTATCGGC
*
68231224 AAAAGCCGAAATACTG
1 AAAAGCCGAAATACCG
* *
68231240 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATACCG
*
68231256 AAAAGTCGAAA
1 AAAAGCCGAAA
68231267 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.51, C:0.16, G:0.21, T:0.12
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:68231530 original size:29 final size:29
Alignment explanation
Indices: 68231475--68231586 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
68231465 GTGAGCATGA
* * *
68231475 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
68231503 ATATAAATGTGATTTGGGCCGAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
68231532 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
68231561 ATATGAATAT-AATTGGGCTTAATGGG
1 ATATAAATGTGATTTGGGCCTAATGGG
68231587 GCCAGATATA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
28 25 0.36
29 45 0.64
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:68231589 original size:58 final size:58
Alignment explanation
Indices: 68231488--68231599 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
68231478 TGAATGTGAC
* * *
68231488 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCGAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGAATTGGGCCGAATGGGCCAGATACAGGTGATT
* * ** *
68231546 TGGGCCTAATGGGCCATATGAATAT-AATTGGGCTTAATGGGGCCAGATATAGGT
1 TGGGCCTAACGGGCCATATAAATATGAATTGGGCCGAAT-GGGCCAGATACAGGT
68231600 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
57 10 0.22
58 35 0.78
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGAATTGGGCCGAATGGGCCAGATACAGGTGATT
Found at i:68239327 original size:34 final size:34
Alignment explanation
Indices: 68239280--68239381 Score: 123
Period size: 34 Copynumber: 3.0 Consensus size: 34
68239270 TTGCATACTG
* *
68239280 TACTGATACTGTTATTGAAATGGGCTTAGGCCCA
1 TACTGCTACTGTTATTGAAATGGGCTAAGGCCCA
* *
68239314 TACTGCTAATGTTATTGAAATGGGCTCAGGCCCCA
1 TACTGCTACTGTTATTGAAATGGGCTAAGG-CCCA
* * * *
68239349 AATTGCTACTGTTAATGAAATGGACTAAGGCCC
1 TACTGCTACTGTTATTGAAATGGGCTAAGGCCC
68239382 TAGTTGAGAG
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
34 30 0.52
35 28 0.48
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (34 bp):
TACTGCTACTGTTATTGAAATGGGCTAAGGCCCA
Found at i:68239368 original size:35 final size:35
Alignment explanation
Indices: 68239281--68239381 Score: 123
Period size: 35 Copynumber: 2.9 Consensus size: 35
68239271 TGCATACTGT
* * *
68239281 ACTGATACTGTTATTGAAATGGGCTTAGG-CCCAT
1 ACTGCTACTGTTATTGAAATGGGCTAAGGCCCCAA
* *
68239315 ACTGCTAATGTTATTGAAATGGGCTCAGGCCCCAA
1 ACTGCTACTGTTATTGAAATGGGCTAAGGCCCCAA
* * *
68239350 ATTGCTACTGTTAATGAAATGGACTAAGGCCC
1 ACTGCTACTGTTATTGAAATGGGCTAAGGCCC
68239382 TAGTTGAGAG
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
34 26 0.46
35 31 0.54
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (35 bp):
ACTGCTACTGTTATTGAAATGGGCTAAGGCCCCAA
Found at i:68241944 original size:20 final size:20
Alignment explanation
Indices: 68241905--68241944 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
68241895 AAACTTCTTC
*
68241905 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTACTCAAAT
* *
68241925 ACTTACTTACTTAGTCAAAT
1 ACTTACTCACTTACTCAAAT
68241945 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTACTCAAAT
Found at i:68242262 original size:53 final size:54
Alignment explanation
Indices: 68242135--68242390 Score: 235
Period size: 55 Copynumber: 4.8 Consensus size: 54
68242125 ACACGGGTAC
* * * * *
68242135 CTTACCATTGCCATGACTTGTCATGGTCGTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
68242184 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCTTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
68242237 CTCACCAATGCCATGCCTT-AGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
68242292 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
68242345 CCTTACCAATTGGCATACCTT-AGCATGGTCTTACATGGTATCCTTG
1 -CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTG
68242391 AACCCTAATG
Statistics
Matches: 171, Mismatches: 22, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 3 0.02
53 47 0.27
54 11 0.06
55 69 0.40
56 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:68242326 original size:108 final size:110
Alignment explanation
Indices: 68242182--68242382 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
68242172 ATCCTTTTGA
* * *
68242182 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCTTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
68242245 -TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATACCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
68242290 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
68242355 TGGCATACCTTAGCATGGTCTTACATGG
66 TGCCATACCTTAGCATGGTCTTACATGG
68242383 TATCCTTGAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATACCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Done.