Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 21 of 316
Found at i:6271431 original size:87 final size:85
Alignment explanation
Indices: 6271168--6271501 Score: 253
Period size: 87 Copynumber: 3.8 Consensus size: 85
6271158 CTTGGACGTA
* * *
6271168 ATCTACTCTACTGCCAATTCAGAGAGATAAGAT-TCTTTATTTTAATCCGCTCCACTGTAACTTC
1 ATCTACTCCACTG-TAATTCAGAGAGATAAGATCTC-TTATTTTAATCCGCTCCACTGTAACCTC
**
6271232 AGGGAGATAGGATTATGTCTTTA
64 AGGGAGATAGGA-TATGTCTTCG
* * * * * ** ** *
6271255 ATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGC-AATTCTTCGGTCTACTCCGCTGTAACC
1 ATCTACTCCACTGTAA-TTCAGAGAGATAAGATCT-CTTATT-TT-AATCCGCTCCACTGTAACC
* * ** * *
6271319 TCAGGGAAATAAGACCTG-ATGCG
62 TCAGGGAGATAGGATATGTCTTCG
* * *
6271342 ATCTACTCTACTGTAACTTCAGAGAGATAAGGTC-CTTTATTTTAATCCGCTCCACTGTAACTTC
1 ATCTACTCCACTGTAA-TTCAGAGAGATAAGATCTC-TTATTTTAATCCGCTCCACTGTAACCTC
6271406 AGGGAGATAGGATAGTGTCTTCG
64 AGGGAGATAGGATA-TGTCTTCG
* * * *** * *
6271429 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
1 ATCTACTCCACTGTAAT-TCAGAGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAACCTCA
6271494 GGGAGATA
65 GGGAGATA
6271502 AGATCTGAAA
Statistics
Matches: 185, Mismatches: 51, Indels: 22
0.72 0.20 0.09
Matches are distributed among these distances:
85 26 0.14
86 7 0.04
87 120 0.65
88 6 0.03
89 26 0.14
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (85 bp):
ATCTACTCCACTGTAATTCAGAGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAACCTCAG
GGAGATAGGATATGTCTTCG
Found at i:6292343 original size:19 final size:19
Alignment explanation
Indices: 6292319--6292369 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
6292309 TTAAAAATAA
6292319 AAAAATAT-TAAATTATTTT
1 AAAAATATATAAATT-TTTT
*
6292338 AAAAAT-TATCAATTTTTT
1 AAAAATATATAAATTTTTT
*
6292356 AAAAATATAAAAAT
1 AAAAATATATAAAT
6292370 ATAATTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAAATATATAAATTTTTT
Found at i:6293332 original size:13 final size:13
Alignment explanation
Indices: 6293314--6293347 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
6293304 GTTATTTTTA
6293314 TTTAAATATAAAT
1 TTTAAATATAAAT
*
6293327 TTTAAATTTTAAAT
1 TTTAAA-TATAAAT
6293341 TTTAAAT
1 TTTAAAT
6293348 TCTTTTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTAAATATAAAT
Found at i:6293334 original size:7 final size:7
Alignment explanation
Indices: 6293322--6293348 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
6293312 TATTTAAATA
6293322 TAAATTT
1 TAAATTT
6293329 TAAATTT
1 TAAATTT
6293336 TAAATTT
1 TAAATTT
6293343 TAAATT
1 TAAATT
6293349 CTTTTTGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TAAATTT
Found at i:6298635 original size:9 final size:9
Alignment explanation
Indices: 6298621--6298663 Score: 86
Period size: 9 Copynumber: 4.8 Consensus size: 9
6298611 GTGTACGGTG
6298621 GCGCGTGTA
1 GCGCGTGTA
6298630 GCGCGTGTA
1 GCGCGTGTA
6298639 GCGCGTGTA
1 GCGCGTGTA
6298648 GCGCGTGTA
1 GCGCGTGTA
6298657 GCGCGTG
1 GCGCGTG
6298664 GACGCATGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.09, C:0.23, G:0.47, T:0.21
Consensus pattern (9 bp):
GCGCGTGTA
Found at i:6299205 original size:24 final size:25
Alignment explanation
Indices: 6299178--6299225 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
6299168 CTTTTTTATA
*
6299178 TATATTTAAT-TTATTTTCAAATAC
1 TATATGTAATATTATTTTCAAATAC
* *
6299202 TATATGTATTATTATTTTTAAATA
1 TATATGTAATATTATTTTCAAATA
6299226 TTAGTTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (25 bp):
TATATGTAATATTATTTTCAAATAC
Found at i:6299380 original size:18 final size:18
Alignment explanation
Indices: 6299341--6299391 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
6299331 TGTATATTAT
* **
6299341 TTTTATATTATATACGTT
1 TTTTATATTATATATGCA
6299359 TTTTATATTATATATGCA
1 TTTTATATTATATATGCA
6299377 TTTTACT-TTATATAT
1 TTTTA-TATTATATAT
6299392 TATTTATCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (18 bp):
TTTTATATTATATATGCA
Found at i:6299732 original size:18 final size:18
Alignment explanation
Indices: 6299697--6299738 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
6299687 TGCTCTAATA
*
6299697 TATTTTTTACTTCTTTTT
1 TATTTTTTACTTCGTTTT
6299715 TATTATTTTA-TTCGTTTT
1 TATT-TTTTACTTCGTTTT
6299733 T-TTTTT
1 TATTTTT
6299739 GTTTTTATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 2 0.09
18 12 0.55
19 5 0.23
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (18 bp):
TATTTTTTACTTCGTTTT
Found at i:6299732 original size:19 final size:18
Alignment explanation
Indices: 6299697--6299738 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
6299687 TGCTCTAATA
6299697 TATTTTTTACTTCTTTTT
1 TATTTTTTACTTCTTTTT
6299715 TATTATTTTA-TTCGTTTTT
1 TATT-TTTTACTTC-TTTTT
6299734 T-TTTT
1 TATTTT
6299739 GTTTTTATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.09
18 9 0.41
19 11 0.50
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (18 bp):
TATTTTTTACTTCTTTTT
Found at i:6301672 original size:39 final size:39
Alignment explanation
Indices: 6301618--6301714 Score: 194
Period size: 39 Copynumber: 2.5 Consensus size: 39
6301608 AACTTCCATT
6301618 ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
1 ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
6301657 ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
1 ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
6301696 ACCAAGCAACCTACTATCA
1 ACCAAGCAACCTACTATCA
6301715 ATAAATGAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (39 bp):
ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
Found at i:6302219 original size:17 final size:17
Alignment explanation
Indices: 6302186--6302220 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
6302176 TTGTTTGTGG
**
6302186 TTTTTATAAAAGTATTA
1 TTTTTATAAAAAAATTA
6302203 TTTTTATAAAAAAATTA
1 TTTTTATAAAAAAATTA
6302220 T
1 T
6302221 GTTAGAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
TTTTTATAAAAAAATTA
Found at i:6302796 original size:280 final size:278
Alignment explanation
Indices: 6302295--6302855 Score: 1068
Period size: 280 Copynumber: 2.0 Consensus size: 278
6302285 TTGCGTATTT
*
6302295 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGTAAAACTAAATTGAT
1 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGGAAAACTAAATTGAT
6302360 AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
66 AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
6302425 TATCAATATTTGAGAGTTAAATTTATTATTACGTCAATAGAAAAGTCACCATTAGTGACAGAACC
131 TATCAATATTTGAGAGTTAAATTTATTATTACGTCAATAGAAAAGTCACCATTAGTGACAGAACC
6302490 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
196 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
6302555 TATTTTTATAGTTTGTCTGG
261 --TTTTTATAGTTTGTCTGG
6302575 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGGAAAACTAAATTGAT
1 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGGAAAACTAAATTGAT
*
6302640 AGAATGTGTGGAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
66 AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
* *
6302705 TATCAATATTTGAGAGTTAAATTTATTATTATGTCAATAGAAAAGTCACCATTAGTGATAGAACC
131 TATCAATATTTGAGAGTTAAATTTATTATTACGTCAATAGAAAAGTCACCATTAGTGACAGAACC
6302770 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
196 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
6302835 TTTTTATAGTTTGTCTGG
261 TTTTTATAGTTTGTCTGG
6302853 TTA
1 TTA
6302856 CCCAAATTTC
Statistics
Matches: 277, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
278 21 0.08
280 256 0.92
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (278 bp):
TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGGAAAACTAAATTGAT
AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
TATCAATATTTGAGAGTTAAATTTATTATTACGTCAATAGAAAAGTCACCATTAGTGACAGAACC
GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
TTTTTATAGTTTGTCTGG
Found at i:6307488 original size:19 final size:19
Alignment explanation
Indices: 6307466--6307518 Score: 88
Period size: 19 Copynumber: 2.7 Consensus size: 19
6307456 TTCAACTCGG
6307466 AAGATCTCCTTCAAGACTA
1 AAGATCTCCTTCAAGACTA
*
6307485 AAGATCTCCTTCAAGACTG
1 AAGATCTCCTTCAAGACTA
6307504 AAGATCTCCATTCAA
1 AAGATCTCC-TTCAA
6307519 TTTCTCTCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 27 0.84
20 5 0.16
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.26
Consensus pattern (19 bp):
AAGATCTCCTTCAAGACTA
Found at i:6312366 original size:18 final size:18
Alignment explanation
Indices: 6312343--6312380 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6312333 TAAAAAGCAT
*
6312343 AATATACAAAACAGTTTA
1 AATATACAAAACAATTTA
*
6312361 AATATATAAAACAATTTA
1 AATATACAAAACAATTTA
6312379 AA
1 AA
6312381 GTAAGTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.29
Consensus pattern (18 bp):
AATATACAAAACAATTTA
Found at i:6312412 original size:23 final size:22
Alignment explanation
Indices: 6312359--6312413 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
6312349 CAAAACAGTT
6312359 TAAATATATAAAACAATTTAAAG
1 TAAATA-ATAAAACAATTTAAAG
* *
6312382 TAAGTAATAAAACTATTTTAGAA-
1 TAAATAATAAAAC-AATTTA-AAG
6312405 TAAATAATA
1 TAAATAATA
6312414 TATAAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 7 0.26
23 18 0.67
24 2 0.07
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (22 bp):
TAAATAATAAAACAATTTAAAG
Found at i:6315277 original size:21 final size:23
Alignment explanation
Indices: 6315253--6315301 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
6315243 GTTAAATTTC
6315253 AAAATTTAT-AAAAAAAA-TCTA
1 AAAATTTATCAAAAAAAATTCTA
*
6315274 AAAA--TATCAAAAAAAATTCTG
1 AAAATTTATCAAAAAAAATTCTA
6315295 AAAATTT
1 AAAATTT
6315302 CTCTAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 3 0.13
20 8 0.35
21 11 0.48
23 1 0.04
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (23 bp):
AAAATTTATCAAAAAAAATTCTA
Found at i:6317591 original size:12 final size:12
Alignment explanation
Indices: 6317576--6317601 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6317566 TATATTTTAT
6317576 TTTATATATTTC
1 TTTATATATTTC
6317588 TTTATATATTTC
1 TTTATATATTTC
6317600 TT
1 TT
6317602 ATAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTATATATTTC
Found at i:6324202 original size:20 final size:20
Alignment explanation
Indices: 6324174--6324218 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6324164 CTTCTATTTC
6324174 AAAAAAAAAAGAGAGAAA-AG
1 AAAAAAAAAAGAGA-AAATAG
* *
6324194 AAAAGAAAAATAGAAAATAG
1 AAAAAAAAAAGAGAAAATAG
6324214 AAAAA
1 AAAAA
6324219 GAGAAAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (20 bp):
AAAAAAAAAAGAGAAAATAG
Found at i:6325388 original size:35 final size:35
Alignment explanation
Indices: 6325342--6325412 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
6325332 TTTTTTCTTT
* *
6325342 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGACTGGAGTCGTAGGCACGACGC
6325377 TTATTCTGTCACGACTGGAGTCGTAGGCACGACGC
1 TTATTCTGTCACGACTGGAGTCGTAGGCACGACGC
6325412 T
1 T
6325413 GATCTGATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.17, C:0.25, G:0.31, T:0.27
Consensus pattern (35 bp):
TTATTCTGTCACGACTGGAGTCGTAGGCACGACGC
Found at i:6332815 original size:11 final size:11
Alignment explanation
Indices: 6332796--6332826 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
6332786 ATCATGTTCC
6332796 ACAAAAAAAAGG
1 ACAAAAAAAA-G
6332808 ACAAAAAAAAG
1 ACAAAAAAAAG
6332819 ACAAAAAA
1 ACAAAAAA
6332827 GAAAAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.81, C:0.10, G:0.10, T:0.00
Consensus pattern (11 bp):
ACAAAAAAAAG
Found at i:6332824 original size:9 final size:9
Alignment explanation
Indices: 6332810--6332905 Score: 70
Period size: 9 Copynumber: 9.9 Consensus size: 9
6332800 AAAAAAGGAC
6332810 AAAAAAAAG
1 AAAAAAAAG
*
6332819 ACAAAAAAG
1 AAAAAAAAG
6332828 AAAAAAAAG
1 AAAAAAAAG
6332837 AAGAAGAAATAATTCG
1 -A-AA-AAA-AA---G
6332853 AAAAAAAAG
1 AAAAAAAAG
6332862 AAAAAAAAG
1 AAAAAAAAG
6332871 --AAAAAAG
1 AAAAAAAAG
* *
6332878 AAAAGAGAG
1 AAAAAAAAG
6332887 AAAAAAAAG
1 AAAAAAAAG
6332896 TTAAAAAAAA
1 --AAAAAAAA
6332906 ATAAAAAGTT
Statistics
Matches: 70, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
7 7 0.10
9 38 0.54
10 1 0.01
11 10 0.14
12 5 0.07
13 5 0.07
14 2 0.03
15 1 0.01
16 1 0.01
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.05
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:6332890 original size:34 final size:35
Alignment explanation
Indices: 6332821--6332913 Score: 95
Period size: 34 Copynumber: 2.7 Consensus size: 35
6332811 AAAAAAAGAC
* **
6332821 AAAAAAGAAAAAAAAG-AAGAAGAAATAATTCGAA
1 AAAAAAGAAAAAAAAGAAAAAAGAAATAATGAGAA
6332855 AAAAAAGAAAAAAAAGAAAAAAGAAA-AGA-GAGAA
1 AAAAAAGAAAAAAAAGAAAAAAGAAATA-ATGAGAA
6332889 AAAAAAGTTAAAAAAAA-ATAAAAAG
1 AAAAAAG--AAAAAAAAGA-AAAAAG
6332914 TTTGATGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
34 27 0.53
35 10 0.20
36 14 0.27
ACGTcount: A:0.78, C:0.01, G:0.14, T:0.06
Consensus pattern (35 bp):
AAAAAAGAAAAAAAAGAAAAAAGAAATAATGAGAA
Found at i:6332902 original size:43 final size:43
Alignment explanation
Indices: 6332810--6332913 Score: 106
Period size: 43 Copynumber: 2.4 Consensus size: 43
6332800 AAAAAAGGAC
* ***
6332810 AAAAAAAAGACAAAAAAGAAAAAAAAGAAGAAGAAATAATTCG
1 AAAAAAAAGAAAAAAAAGAAAAAAAAGAAGAAGAAATAAAAAG
6332853 AAAAAAAAGAAAAAAAAGAAAAAAGAA-AAGAGAGAAA-AAAAAG
1 AAAAAAAAGAAAAAAAAGAAAAAA-AAGAAGA-AGAAATAAAAAG
* *
6332896 TTAAAAAAA-AATAAAAAG
1 -AAAAAAAAGAAAAAAAAG
6332914 TTTGATGATT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
43 38 0.73
44 14 0.27
ACGTcount: A:0.79, C:0.02, G:0.13, T:0.06
Consensus pattern (43 bp):
AAAAAAAAGAAAAAAAAGAAAAAAAAGAAGAAGAAATAAAAAG
Found at i:6333683 original size:35 final size:35
Alignment explanation
Indices: 6333637--6333707 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
6333627 TTTTTTCTTT
6333637 TTATTCCGTCACGGCTGGAGTCATGGGCACGACGC
1 TTATTCCGTCACGGCTGGAGTCATGGGCACGACGC
* *
6333672 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCCGTCACGGCTGGAGTCATGGGCACGACGC
6333707 T
1 T
6333708 GATCTGACGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.15, C:0.27, G:0.32, T:0.25
Consensus pattern (35 bp):
TTATTCCGTCACGGCTGGAGTCATGGGCACGACGC
Found at i:6335095 original size:127 final size:127
Alignment explanation
Indices: 6334867--6335110 Score: 366
Period size: 127 Copynumber: 1.9 Consensus size: 127
6334857 CTTGTTAGGT
* *
6334867 AGCAGATCAAAGACATAGCAGATCTGACATTCATCGGGGCAGATCCAAGATGGCGGATCTTATCT
1 AGCAGATCAAAGACATAGCAGATCTGACATTCATCGGGGCAGATCCAAGATGACAGATCTTATCT
* * * * *
6334932 CTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGG
66 CTCCGTAATAAGCAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTATTCGACAGGG
* *
6334994 AGCAGATCGAAGACATAGCAGA-CTTGACCTTCATCGGGGCAGATCCAAGATGACAGATCTTATC
1 AGCAGATCAAAGACATAGCAGATC-TGACATTCATCGGGGCAGATCCAAGATGACAGATCTTATC
*
6335058 TCTCCGTAAT-GGACAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTA
65 TCTCCGTAATAAG-CAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTA
6335111 ATGGGCGGGG
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
126 2 0.02
127 103 0.98
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (127 bp):
AGCAGATCAAAGACATAGCAGATCTGACATTCATCGGGGCAGATCCAAGATGACAGATCTTATCT
CTCCGTAATAAGCAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTATTCGACAGGG
Found at i:6335209 original size:172 final size:172
Alignment explanation
Indices: 6334922--6335282 Score: 607
Period size: 172 Copynumber: 2.1 Consensus size: 172
6334912 CAAGATGGCG
6334922 GATCTTATCTCTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
1 GATCTTATCTCTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
* * *
6334987 GACAGGGAGCAGATCGAAGACATAGCAGACTTGACCTTCATCGGGGCAGATCCAAGATGACAGAT
66 GACAGGGAGCAGATCAAAGACATAGCAGACTTGACCTTCATCGAGGCAGATCAAAGATGACAGAT
6335052 CTTATCTCTCCGTAATGGACAGGGAGTAAATCAAAGATAACA
131 CTTATCTCTCCGTAATGGACAGGGAGTAAATCAAAGATAACA
**
6335094 GATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
1 GATCTTATCTCTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
6335159 GACAGGGAGCAGATCAAAGACATAGCAGA-TCTGACCTTCATCGAGGCAGATCAAAGATGACAGA
66 GACAGGGAGCAGATCAAAGACATAGCAGACT-TGACCTTCATCGAGGCAGATCAAAGATGACAGA
* * * * * *
6335223 TCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACA
130 TCTTATCTCTCCGTAATGGACAGGGAGTAAATCAAAGATAACA
6335266 GATCTTATCTCTCTGTA
1 GATCTTATCTCTCTGTA
6335283 TTCGATGGGG
Statistics
Matches: 177, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
171 1 0.01
172 176 0.99
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (172 bp):
GATCTTATCTCTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
GACAGGGAGCAGATCAAAGACATAGCAGACTTGACCTTCATCGAGGCAGATCAAAGATGACAGAT
CTTATCTCTCCGTAATGGACAGGGAGTAAATCAAAGATAACA
Found at i:6335405 original size:299 final size:298
Alignment explanation
Indices: 6334867--6335808 Score: 1169
Period size: 299 Copynumber: 3.2 Consensus size: 298
6334857 CTTGTTAGGT
* * * * *
6334867 AGCAGATCAAAGACATAGCAGATCTGACATTCATCGGGGCAGATCCAAGATGGCGGATCTTATCT
1 AGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAGATCAAAGATGACAGATCTTATCT
** *
6334932 CTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAGC
66 CTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGC
**
6334997 AGATCGAAGACATAGCAGA-CTTGACCTTCATCGGGGCAGATCCAAGATGACAGATCTTATCTCT
131 AGATCGAAGACATAGCAGATC-TGACCTTCATTAGGGCAGATCCAAGATGACAGATCTTATCTCT
* * * * * *
6335061 CCGTAATGGACAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAG
195 CTGTAATGGACGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAG
6335126 ATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGG
260 ATCCAAGATGACAGATCTTATCTCTCTGTATTCGAC-GGG
6335166 AGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAGATCAAAGATGACAGATCTTATCT
1 AGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAGATCAAAGATGACAGATCTTATCT
*
6335231 CTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGATGGGGAGC
66 CTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGC
*
6335296 AGATCGAAGACATAGCAGATCTGACCTTCATTAGGGCAGATCTAAGATGACAGATCTTATCTCTC
131 AGATCGAAGACATAGCAGATCTGACCTTCATTAGGGCAGATCCAAGATGACAGATCTTATCTCTC
* * *
6335361 TGTAATAGG-CGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAGTAG
196 TGTAAT-GGACGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAG
* * *
6335425 ATCGAAGACAT-AGCAGATCTGA-C-CT-T-CA-T---CGGG
260 ATCCAAG--ATGA-CAGATCTTATCTCTCTGTATTCGACGGG
* * * * * * * *
6335458 -GCAGATCCAAG--ATGGCAGATCTTATCTCTCCGTAATAGACGGTGAGTAGATAAAAAATGACA
1 AGCAGATCAAAGACATAGCAGATCTGA-C-CT---TCAT---C-GAG-GCAGATCAAAGATGACA
* ** *
6335520 GATCTTATCTCTCTGTAATGGACGGAAAGTAGATCTAAGATGACAGATCTTATCTCTCTGTATTC
56 GATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
* * * * * *
6335585 GACGGGGAGCAGATCGAAAACGTAGCAGCTCTGACCTTCA-TCGGGACAGATCCAAGATGGCGGA
121 GACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAGGG-CAGATCCAAGATGACAGA
*
6335649 TCTTATCTCTCTGTAATGGACGGGGAGTAGTTCCAAGATGACAGATCTTATCTCTCTGTAATGGA
185 TCTTATCTCTCTGTAATGGACGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTAATGGA
*
6335714 CGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGG
250 CGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGAC-GGG
* * * *
6335764 AGCAGATCGAAA-ACATAACAGATCTGACTTTCATCAAAGCAGATC
1 AGCAGATC-AAAGACATAGCAGATCTGACCTTCATCGAGGCAGATC
6335809 CAGGATGATT
Statistics
Matches: 549, Mismatches: 63, Indels: 62
0.81 0.09 0.09
Matches are distributed among these distances:
289 11 0.02
290 1 0.00
291 12 0.02
292 3 0.01
293 1 0.00
294 3 0.01
296 1 0.00
297 12 0.02
298 11 0.02
299 447 0.81
300 6 0.01
301 12 0.02
302 1 0.00
304 3 0.01
305 1 0.00
306 3 0.01
307 8 0.01
308 3 0.01
309 10 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (298 bp):
AGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAGATCAAAGATGACAGATCTTATCT
CTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGC
AGATCGAAGACATAGCAGATCTGACCTTCATTAGGGCAGATCCAAGATGACAGATCTTATCTCTC
TGTAATGGACGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAGA
TCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGG
Found at i:6335520 original size:172 final size:172
Alignment explanation
Indices: 6335342--6335798 Score: 727
Period size: 172 Copynumber: 2.7 Consensus size: 172
6335332 CAGATCTAAG
*
6335342 ATGACAGATCTTATCTCTCTGTAATAGG-CGGGGAGTAGATCCAAGATGACAGATCTTATCTCTC
1 ATGACAGATCTTATCTCTCTGTAAT-GGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTC
* * * *
6335406 TGTATTCGACAGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAGATCCAAGAT
65 TGTATTCGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGACAGATCCAAGAT
*
6335471 GGCAGATCTTATCTCTCCGTAATAGACGGTGAGTAGATAAAAA
130 GGCAGATCTTATCTCTCCGTAATAGACGGGGAGTAGATAAAAA
* *
6335514 ATGACAGATCTTATCTCTCTGTAATGGACGGAAAGTAGATCTAAGATGACAGATCTTATCTCTCT
1 ATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCT
* *
6335579 GTATTCGACGGGGAGCAGATCGAAAACGTAGCAGCTCTGACCTTCATCGGGACAGATCCAAGATG
66 GTATTCGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGACAGATCCAAGATG
* * * * ** *
6335644 GCGGATCTTATCTCTCTGTAATGGACGGGGAGTAGTTCCAAG
131 GCAGATCTTATCTCTCCGTAATAGACGGGGAGTAGATAAAAA
6335686 ATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCT
1 ATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCT
* *
6335751 GTATTCGACGGGGAGCAGATCGAAAACATAACAGATCTGACTTTCATC
66 GTATTCGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATC
6335799 AAAGCAGATC
Statistics
Matches: 261, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
171 2 0.01
172 259 0.99
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (172 bp):
ATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCT
GTATTCGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGACAGATCCAAGATG
GCAGATCTTATCTCTCCGTAATAGACGGGGAGTAGATAAAAA
Found at i:6335554 original size:127 final size:127
Alignment explanation
Indices: 6335081--6335536 Score: 741
Period size: 127 Copynumber: 3.6 Consensus size: 127
6335071 CAGGGAGTAA
* *
6335081 ATCAAAGATAACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTA
1 ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
* *
6335146 TCTCTCTGTATTCGACAGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAG
66 TCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
*
6335208 ATCAAAGATGACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTA
1 ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
** **
6335273 TCTCTCTGTATTCGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAGGGCAG
66 TCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
*
6335335 ATCTAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
1 ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
*
6335400 TCTCTCTGTATTCGACAGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
66 TCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
* * * * * ** *
6335462 ATCCAAGATGGCAGATCTTATCTCTCCGTAATAGACGGTGAGTAGATAAAAAATGACAGATCTTA
1 ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
6335527 TCTCTCTGTA
66 TCTCTCTGTA
6335537 ATGGACGGAA
Statistics
Matches: 307, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
127 307 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (127 bp):
ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
TCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
Found at i:6335788 original size:47 final size:45
Alignment explanation
Indices: 6335632--6335771 Score: 217
Period size: 45 Copynumber: 3.1 Consensus size: 45
6335622 TCATCGGGAC
* *
6335632 AGATCCAAGATGGCGGATCTTATCTCTCTGTAATGGACGGGGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* *
6335677 AGTTCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGAGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * *
6335722 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGC
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
6335767 AGATC
1 AGATC
6335772 GAAAACATAA
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 86 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (45 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
Found at i:6337310 original size:20 final size:19
Alignment explanation
Indices: 6337275--6337312 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
6337265 CTTTTTATAT
6337275 TTTAATTTTCTTTAAATAC
1 TTTAATTTTCTTTAAATAC
6337294 TTTATATTTT-TTATAAATA
1 TTTA-ATTTTCTT-TAAATA
6337313 TTAGTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTAATTTTCTTTAAATAC
Found at i:6337405 original size:12 final size:12
Alignment explanation
Indices: 6337390--6337415 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6337380 TATATTTTAT
6337390 TTTATATATTTC
1 TTTATATATTTC
6337402 TTTATATATTTC
1 TTTATATATTTC
6337414 TT
1 TT
6337416 ATAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTATATATTTC
Found at i:6339785 original size:19 final size:20
Alignment explanation
Indices: 6339761--6339805 Score: 76
Period size: 18 Copynumber: 2.4 Consensus size: 20
6339751 GTTAATTTTC
6339761 AAAAATTATAAAAAAATC-T
1 AAAAATTATAAAAAAATCTT
6339780 AAAAA-TATAAAAAAATCTT
1 AAAAATTATAAAAAAATCTT
6339799 AAAAATT
1 AAAAATT
6339806 TTGAAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.50
19 11 0.46
20 1 0.04
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAAATTATAAAAAAATCTT
Found at i:6345621 original size:22 final size:22
Alignment explanation
Indices: 6345590--6345648 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 22
6345580 TTTCTTTTTA
*
6345590 AAAAAAATAT-TAATACAATAT
1 AAAATAATATATAATACAATAT
* *
6345611 -AAATAATATATAATGCCATAT
1 AAAATAATATATAATACAATAT
6345632 AAAATAATATAATAATA
1 AAAATAATAT-ATAATA
6345649 TATGATATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 8 0.26
21 9 0.29
22 9 0.29
23 5 0.16
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATAATATATAATACAATAT
Found at i:6351082 original size:11 final size:11
Alignment explanation
Indices: 6351058--6351100 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
6351048 TTCTAATACG
*
6351058 TATATATATTA
1 TATATATTTTA
*
6351069 TATGTATTTTA
1 TATATATTTTA
* *
6351080 TATATATTATG
1 TATATATTTTA
6351091 TATATATTTT
1 TATATATTTT
6351101 TTTATTGCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:6351492 original size:19 final size:19
Alignment explanation
Indices: 6351405--6351492 Score: 54
Period size: 19 Copynumber: 4.3 Consensus size: 19
6351395 TAATATTTTC
* *
6351405 TTTTATTGTAGATATTATTC
1 TTTTA-TGTACATATTATTA
6351425 TTATTAT-TACATACTT-TTA
1 TT-TTATGTACATA-TTATTA
* *
6351444 TTATATGCACATATATATATGTA
1 TTTTATGTAC--ATAT-TAT-TA
6351467 TTTTTATGTACATATTATTA
1 -TTTTATGTACATATTATTA
6351487 TTTTAT
1 TTTTAT
6351493 ATTATTATTA
Statistics
Matches: 53, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
18 3 0.06
19 17 0.32
20 8 0.15
21 10 0.19
22 5 0.09
23 2 0.04
24 8 0.15
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.57
Consensus pattern (19 bp):
TTTTATGTACATATTATTA
Found at i:6363576 original size:72 final size:72
Alignment explanation
Indices: 6363329--6364278 Score: 1057
Period size: 72 Copynumber: 12.9 Consensus size: 72
6363319 CCGTTTTCAA
* ** ** * ** *
6363329 AAAAATCAACTCATATTGTAAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCAATTTA
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6363392 T-TTTTC
66 TGTTTTC
* ** * *
6363398 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTAAGGT-ATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6363462 TGTCTTTC
66 TGT-TTTC
* *
6363470 AAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTAATTTCAA
1 ----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
6363535 TTTCTGTTTTC
62 TTTCTGTTTTC
* *
6363546 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6363611 TGTTTTTC
66 TG-TTTTC
* * ** **
6363619 AAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
1 ------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
6363684 AATTTCTGTTTTC
60 AATTTCTGTTTTC
* * * *
6363697 AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6363762 TGTTTTC
66 TGTTTTC
* * ** * * *
6363769 AAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATTTCAAT
6363833 TTCTGTGTTTC
63 TTCTGT-TTTC
* *
6363844 AAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAAT
1 ---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
*
6363909 TTCTATTTTC
63 TTCTGTTTTC
* *
6363919 AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
*
6363984 TATTTTC
66 TGTTTTC
* *
6363991 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
6364056 TGTTTTC
66 TGTTTTC
* *
6364063 -AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
*
6364127 TATTTTTTTTC
66 ----TGTTTTC
* ** **
6364138 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTTCAATT
1 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
**
6364203 TCTGTTGTAA
64 TCTGTT-TTC
* * ** * * * *
6364213 AAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAATT
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAATT
6364278 T
64 T
6364279 TCGTTTTTCA
Statistics
Matches: 769, Mismatches: 78, Indels: 62
0.85 0.09 0.07
Matches are distributed among these distances:
69 38 0.05
70 10 0.01
71 70 0.09
72 303 0.39
73 44 0.06
74 27 0.04
75 35 0.05
76 73 0.09
77 14 0.02
78 95 0.12
79 60 0.08
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:6363956 original size:222 final size:218
Alignment explanation
Indices: 6363329--6364278 Score: 1112
Period size: 222 Copynumber: 4.3 Consensus size: 218
6363319 CCGTTTTCAA
* ** ** * * *
6363329 AAAAATCAACTCATATTGTAAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCAATTTA
1 AAAAATCAACTCTTATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
** * *
6363392 T-TTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTAAGGT-ATT
66 TGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT
* *
6363454 TCAATTTCTGTCTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACAC
131 TCAATTTCTAT-TTTC---AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
6363519 GTTGAGGTAATTTCAATTTCTGTTTTC
192 GTTGAGGTAATTTCAATTTCTGTTTTC
* * *
6363546 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCTTATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* * ** **
6363611 TGTTTTTCAAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
66 TG-TTTTC-----AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
* *
6363676 GTAATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGAC
125 GTAATTTCAATTTCTATTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
6363740 ACGTTAAGGTATTTTCAATTTCTGTTTTC
190 ACGTTGAGGTAATTTCAATTTCTGTTTTC
** * *
6363769 AAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCTTATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTATTTTCAAT
* *
6363833 TTCTGTGTTTCAAAAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
63 TTCTGT-TTTC--AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
6363898 GTAATTTCAATTTCTATTTTC-AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGAC
125 GTAATTTCAATTTCTATTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
*
6363962 ACGTTGAGGTAATTTCAATTTCTATTTTC
190 ACGTTGAGGTAATTTCAATTTCTGTTTTC
* * *
6363991 AAAATTCAACT-TATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTT
1 AAAAATCAACTCT-TATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
* *
6364055 CTGTTTTC--AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATT
65 CTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAAT
* ** **
6364118 TTCAATTTCTATTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGAC
130 TTCAATTTCTA----TTTTC-AAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* **
6364183 ACGCTGAGGTAATTTCAATTTCTGTTGTAA
190 ACGTTGAGGTAATTTCAATTTCTGTT-TTC
* ** * * *
6364213 AAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAATT
1 AAAAATCAACTCTTATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATT
6364278 T
64 T
6364279 TCGTTTTTCA
Statistics
Matches: 639, Mismatches: 67, Indels: 47
0.85 0.09 0.06
Matches are distributed among these distances:
215 62 0.10
217 35 0.05
219 29 0.05
220 24 0.04
221 67 0.10
222 203 0.32
223 103 0.16
224 20 0.03
225 30 0.05
226 5 0.01
227 47 0.07
228 14 0.02
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (218 bp):
AAAAATCAACTCTTATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT
TCAATTTCTATTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
AGGTAATTTCAATTTCTGTTTTC
Found at i:6364021 original size:294 final size:288
Alignment explanation
Indices: 6363329--6364289 Score: 1130
Period size: 294 Copynumber: 3.3 Consensus size: 288
6363319 CCGTTTTCAA
** * ** *
6363329 AAAAATCAACTCATATTGTAAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
* ** * *
6363392 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTAAGGTATTTCA
66 TTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTATTTCA
* * *
6363457 ATTTCTGTCTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAG-ACACGT
131 ATTTCTGT-TTTC---AAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCC-T-CGTACATGC
*
6363521 TGAGGTAATTTCAATTTCTGTTTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
189 TGAGGTATTTTCAATTTCTGTTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
* * *
6363583 CAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTC
254 CAAGACACGCTGAGGTAATTTCAATTTCT-ATTTTC
* **
6363619 AAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
*
6363684 AATTTCTGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTAAGG
60 AATTTCT-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGG
* **
6363749 TATTTTCAATTTCTGTTTTCAAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTCGGTTCAC
124 TA-TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-G-T-AC
*
6363814 ATGCTGAGGTATTTTCAATTTCTGTGTTTCAAAAAAATTCAACTCATATTGTGAGAAATGAGTTG
185 ATGCTGAGGTATTTTCAATTTCTGT-TTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTG
*
6363879 AGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTC
249 AGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTC
* * ** *
6363919 AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
* *
6363984 TATTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTT
66 T-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGT-ATTT
*
6364049 CAATTTCTGTTTTC-AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACATGCTGA
129 CAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC--GTACATGCTGA
* **
6364112 GGTATTTTCAATTTCTATTTTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCC
192 GGTATTTTCAATTTC----TGTTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
** * **
6364176 TCCGGACACGCTGAGGTAATTTCAATTTCTGTTGTAA
253 TCAAGACACGCTGAGGTAATTTCAATTTCTATT-TTC
* * * * *
6364213 AAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAA-T
6364278 TTCGTTTTTCAA
63 TTC-TTTTTCAA
6364290 TTTCTGCCTT
Statistics
Matches: 578, Mismatches: 64, Indels: 45
0.84 0.09 0.07
Matches are distributed among these distances:
291 24 0.04
293 90 0.16
294 180 0.31
295 31 0.05
296 56 0.10
297 35 0.06
298 25 0.04
299 57 0.10
300 18 0.03
301 62 0.11
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (288 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTC
TTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTAAGGTATTTCA
ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGTACATGCTGAGGTA
TTTTCAATTTCTGTTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
CGCTGAGGTAATTTCAATTTCTATTTTC
Found at i:6364381 original size:93 final size:93
Alignment explanation
Indices: 6364211--6364382 Score: 231
Period size: 93 Copynumber: 1.8 Consensus size: 93
6364201 TTTCTGTTGT
* *
6364211 AAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGCTATTTTCAA
*
6364276 TTTTCGTTTTTCAATTTCTGCCTTTCAA
66 TTTTCGTCTTTCAATTTCTGCCTTTCAA
* * * ***
6364304 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGTTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACACCGAGCTATTTTCA
6364368 A-TTTCTGTCTTTCAA
65 ATTTTC-GTCTTTCAA
6364383 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 6 0.09
93 62 0.91
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGCTATTTTCAA
TTTTCGTCTTTCAATTTCTGCCTTTCAA
Found at i:6364430 original size:170 final size:166
Alignment explanation
Indices: 6364138--6364442 Score: 459
Period size: 170 Copynumber: 1.8 Consensus size: 166
6364128 ATTTTTTTTC
*
6364138 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGCTAATTTCAATT
* *
6364203 TCTGTTGTAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGT
66 TCTGTTGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGT
6364268 ATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAA
131 ATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAA
* * * *
6364304 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGTTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGG-ACACGC--TGAGCTAATTTCA
* * * *
6364368 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCTTCAGATCACACACT
63 ATTTCTGT-TGT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACC
6364433 GAGGTATTTT
126 GAGGTATTTT
6364443 TTCAATTTAT
Statistics
Matches: 123, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
165 2 0.02
166 43 0.35
168 19 0.15
169 2 0.02
170 57 0.46
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (166 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGCTAATTTCAATT
TCTGTTGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGT
ATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAA
Found at i:6364441 original size:77 final size:78
Alignment explanation
Indices: 6364282--6364495 Score: 261
Period size: 79 Copynumber: 2.7 Consensus size: 78
6364272 TCAATTTTCG
* * * *
6364282 TTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
1 TTTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGA
* **
6364347 TCACGCGTTGAGCTA
64 TCACACACTGAGCTA
*
6364362 -TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAG-CTTCAGAT
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGAT
*
6364425 CACACACTGAGGTA
65 CACACACTGAGCTA
* * * *
6364439 TTTTTTCAATTTATATTTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAG
1 -TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
6364496 TTTTTTAATT
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
76 3 0.03
77 46 0.39
79 68 0.58
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (78 bp):
TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATC
ACACACTGAGCTA
Found at i:6364514 original size:30 final size:30
Alignment explanation
Indices: 6364478--6364556 Score: 149
Period size: 30 Copynumber: 2.6 Consensus size: 30
6364468 TAACTCATAT
*
6364478 TGCGAGAGGTGAGTTGAGTTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
6364508 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
6364538 TGCGAGAGGTGAGTTGAGC
1 TGCGAGAGGTGAGTTGAGC
6364557 CTCGAGTCAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.20, C:0.09, G:0.34, T:0.37
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
Found at i:6365549 original size:20 final size:20
Alignment explanation
Indices: 6365516--6365574 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 20
6365506 TTGCATCTTT
6365516 TCTTTTTTCTTTTCTTT-TGAA
1 TCTTTTTTC-TTTCTTTCTG-A
*
6365537 TCTTTTTTCTTTCTTTCTGT
1 TCTTTTTTCTTTCTTTCTGA
*
6365557 TTTTTTTTCTTTCTTTCT
1 TCTTTTTTCTTTCTTTCT
6365575 TTTTATATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
20 24 0.69
21 11 0.31
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.76
Consensus pattern (20 bp):
TCTTTTTTCTTTCTTTCTGA
Found at i:6365578 original size:16 final size:16
Alignment explanation
Indices: 6365539--6365570 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
6365529 CTTTTGAATC
6365539 TTTTTTCTTTCTTTCTG
1 TTTTTT-TTTCTTTCTG
6365556 TTTTTTTTTCTTTCT
1 TTTTTTTTTCTTTCT
6365571 TTCTTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTTTTTTCTTTCTG
Found at i:6366450 original size:27 final size:27
Alignment explanation
Indices: 6366391--6366450 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
6366381 GTATATATTA
6366391 TTATTACTAATTATTACTACTGCTAGTG
1 TTATTACTAATTATTACTACT-CTAGTG
*
6366419 TTATTA-TAATTATTATTACAT-TAGTG
1 TTATTACTAATTATTACTAC-TCTAGTG
6366445 TATATT
1 T-TATT
6366451 TTATGTACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 6 0.21
27 16 0.55
28 7 0.24
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (27 bp):
TTATTACTAATTATTACTACTCTAGTG
Found at i:6366477 original size:18 final size:20
Alignment explanation
Indices: 6366445--6366491 Score: 73
Period size: 18 Copynumber: 2.5 Consensus size: 20
6366435 TACATTAGTG
6366445 TATATTTTATGTACATAT-A
1 TATATTTTATGTACATATCA
6366464 TATATTTT-TGTACATATCA
1 TATATTTTATGTACATATCA
6366483 T-TATTTTAT
1 TATATTTTAT
6366492 ATTATTGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.57
Consensus pattern (20 bp):
TATATTTTATGTACATATCA
Found at i:6368197 original size:31 final size:31
Alignment explanation
Indices: 6368162--6368225 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
6368152 CCTTTTAATA
*
6368162 TTTCATATTTGATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
6368193 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
6368224 TT
1 TT
6368226 ATTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:6368482 original size:26 final size:26
Alignment explanation
Indices: 6368451--6368549 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
6368441 GTCTTTTAAT
*
6368451 AACTGGGGCAAAAGCCCTTTTAGGTA
1 AACTGGGGCATAAGCCCTTTTAGGTA
*
6368477 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTAGGTA
* *
6368503 AACTGGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTAGGTA
* *
6368529 AATTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
6368550 TGCACTTCCT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTAGGTA
Found at i:6368622 original size:20 final size:20
Alignment explanation
Indices: 6368599--6368665 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
6368589 TTATGAATAC
6368599 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
6368619 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
6368639 ATCATGTGCATCTCATATCA-
1 ATCATGTGCATATCATA-CAT
6368659 ATCATGT
1 ATCATGT
6368666 ATATCAAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:6368629 original size:40 final size:39
Alignment explanation
Indices: 6368585--6368665 Score: 94
Period size: 40 Copynumber: 2.0 Consensus size: 39
6368575 CCCAACCCAA
6368585 TGCATTATGAATAC-ATCATGTGCATATCATA-CATATCATG
1 TGCA-TAT-AATACAATCATGTGCATATCATATCA-ATCATG
* *
6368625 TGCATATCATACATATCATGTGCATCTCATATCAATCATG
1 TGCATATAATACA-ATCATGTGCATATCATATCAATCATG
6368665 T
1 T
6368666 ATATCAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
38 4 0.11
39 3 0.08
40 27 0.75
41 2 0.06
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (39 bp):
TGCATATAATACAATCATGTGCATATCATATCAATCATG
Found at i:6368630 original size:11 final size:11
Alignment explanation
Indices: 6368599--6368654 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
6368589 TTATGAATAC
6368599 ATCATGTGCAT
1 ATCATGTGCAT
*
6368610 ATCA--TACAT
1 ATCATGTGCAT
6368619 ATCATGTGCAT
1 ATCATGTGCAT
*
6368630 ATCA--TACAT
1 ATCATGTGCAT
6368639 ATCATGTGCAT
1 ATCATGTGCAT
*
6368650 CTCAT
1 ATCAT
6368655 ATCAATCATG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:6368731 original size:25 final size:25
Alignment explanation
Indices: 6368703--6368751 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
6368693 TAATTAAACT
* * *
6368703 CTAGGGGTATAATGGTCATTTTCAC
1 CTAGGGGCAAAATAGTCATTTTCAC
6368728 CTAGGGGCAAAATAGTCATTTTCA
1 CTAGGGGCAAAATAGTCATTTTCA
6368752 TATTATAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (25 bp):
CTAGGGGCAAAATAGTCATTTTCAC
Found at i:6369907 original size:23 final size:23
Alignment explanation
Indices: 6369871--6369915 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
6369861 GCTGAAAAAG
6369871 AAAAAGGGAGAAAAAGACTACACC
1 AAAAAGGGAGAAAAAGAC-ACACC
* *
6369895 AAAAA-GGATAAAACGACACAC
1 AAAAAGGGAGAAAAAGACACAC
6369916 TCTAATTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 10 0.53
24 5 0.26
ACGTcount: A:0.60, C:0.18, G:0.18, T:0.04
Consensus pattern (23 bp):
AAAAAGGGAGAAAAAGACACACC
Found at i:6379363 original size:4 final size:4
Alignment explanation
Indices: 6379356--6379401 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
6379346 ATATATATGT
6379356 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
6379402 TTGAAGAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:6380501 original size:64 final size:64
Alignment explanation
Indices: 6380428--6380644 Score: 147
Period size: 64 Copynumber: 3.3 Consensus size: 64
6380418 CTGGGCCAGA
* *
6380428 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* *** * ** *
6380492 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAAAATACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
6380554 ACTGGGCC-GA-
54 A-TGGCCCATAG
* * *
6380564 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
6380628 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
6380645 TGCAACATCA
Statistics
Matches: 107, Mismatches: 28, Indels: 36
0.63 0.16 0.21
Matches are distributed among these distances:
62 5 0.05
63 6 0.06
64 31 0.29
65 2 0.02
66 10 0.09
67 4 0.04
68 6 0.06
69 4 0.04
70 10 0.09
71 2 0.02
72 16 0.15
73 6 0.06
74 5 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:6380639 original size:136 final size:137
Alignment explanation
Indices: 6380394--6380679 Score: 538
Period size: 136 Copynumber: 2.1 Consensus size: 137
6380384 CATTGGGCCT
**
6380394 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
6380459 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
6380524 CATATGC
131 CATATGC
*
6380531 AAGCCCATTTGGGTAACAGTGGTACTGGGCC-GAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
6380595 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
6380660 CATATGC
131 CATATGC
6380667 AAGCCCATTTGGG
1 AAGCCCATTTGGG
6380680 GAGACTACTC
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 117 0.80
137 29 0.20
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:6380964 original size:25 final size:27
Alignment explanation
Indices: 6380927--6380979 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
6380917 TCAAACATGC
6380927 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
6380953 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
6380979 A
1 A
6380980 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:6382503 original size:26 final size:26
Alignment explanation
Indices: 6382467--6382576 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
6382457 CATGAAATTC
6382467 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6382493 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
6382519 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
6382545 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
6382571 TTATCA
1 TTATCA
6382577 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:6386524 original size:136 final size:137
Alignment explanation
Indices: 6386279--6386564 Score: 529
Period size: 136 Copynumber: 2.1 Consensus size: 137
6386269 CATTGGGCCT
**
6386279 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
6386344 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
6386409 CATATGC
131 CATATGC
6386416 AAGCCCATTTGGGTAACAGTGGTACTGGGCC-GAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
6386480 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
* *
6386545 CATGTGG
131 CATATGC
6386552 AAGCCCATTTGGG
1 AAGCCCATTTGGG
6386565 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 116 0.80
137 29 0.20
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:6386849 original size:25 final size:27
Alignment explanation
Indices: 6386812--6386864 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
6386802 TCAAACATGC
6386812 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
6386838 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
6386864 A
1 A
6386865 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:6388385 original size:26 final size:26
Alignment explanation
Indices: 6388349--6388458 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
6388339 CATGAAATTC
6388349 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6388375 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
6388401 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
6388427 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
6388453 TTATCA
1 TTATCA
6388459 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:6390687 original size:228 final size:227
Alignment explanation
Indices: 6390291--6390861 Score: 932
Period size: 228 Copynumber: 2.5 Consensus size: 227
6390281 TCTACTTCAT
*
6390291 TGCAACTTCA-AGGAGATAAGA-TCTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
1 TGCAACTTCAGA-GAGATAAGATTC-GCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATA
** * * * * * * *
6390354 AGACTTGTAACTTCAACTTGCCCTACTACAACTTCAGGGGGATAAGTTTTGTGGCTTTAATCTAC
64 AGACTCATAACTTTAACTTGCCCCACTGCAACTTCAAGGGAATAAGGTTTGTGGCTTCAATCTAC
6390419 TCCACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCA
129 TCCACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCA
*
6390484 GAGGTATAGGAATTATAGCTTTAATCTGCTCTAC
194 GAGGAATAGGAATTATAGCTTTAATCTGCTCTAC
* *
6390518 TGCAACTTCAGAGAGATAAGATTCACTATCTTCAGTTTGCTCCACTACAACTTCAGGGAGATAAG
1 TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
6390583 ACTCATAAGCTTTAACTTGCCCCACTGCAACTTCAAGGGAATAAGGTTTGTGGCTTCAATCTACT
66 ACTCATAA-CTTTAACTTGCCCCACTGCAACTTCAAGGGAATAAGGTTTGTGGCTTCAATCTACT
6390648 CCACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCAG
130 CCACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCAG
*
6390713 AGGAATAGGATTTATAGCTTTAATCTGCTCTAC
195 AGGAATAGGAATTATAGCTTTAATCTGCTCTAC
* * *
6390746 TGCAACTTTAGAGAGATAAGATTCGTTATCTTCAGTTTGCTTCACTGCAACTTCAGGGAGATAAG
1 TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
6390811 ACTCATAACTTTAACTTGCCCCACTGCAACTTC-AGGGAGATAAGGTTTGTG
66 ACTCATAACTTTAACTTGCCCCACTGCAACTTCAAGGGA-ATAAGGTTTGTG
6390862 TATTTTTATC
Statistics
Matches: 321, Mismatches: 19, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
226 5 0.02
227 100 0.31
228 216 0.67
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (227 bp):
TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
ACTCATAACTTTAACTTGCCCCACTGCAACTTCAAGGGAATAAGGTTTGTGGCTTCAATCTACTC
CACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCAGA
GGAATAGGAATTATAGCTTTAATCTGCTCTAC
Found at i:6390851 original size:44 final size:44
Alignment explanation
Indices: 6390291--6390946 Score: 261
Period size: 44 Copynumber: 14.5 Consensus size: 44
6390281 TCTACTTCAT
* * * * *
6390291 TGCAACTTCAAGGAGATAAGATCTGC-TATCTTCAGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGAT-T-CATAACTTTAATTTGCTCCAC
* * *
6390336 TGCAACTTCAGGGAGATAAGACTT-GTAACTTCAACTTGC-CCTAC
1 TGCAACTTCAGGGAGATAAGA-TTCATAACTTTAATTTGCTCC-AC
* * * ** ** * *
6390380 TACAACTTCAGGGGGATAAGTTTTGTGGCTTTAATCTACTCCAC
1 TGCAACTTCAGGGAGATAAGATTCATAACTTTAATTTGCTCCAC
* ** * * *
6390424 TACAACTTCAGGGAGATAAGATTCACCA-TGGTAGGTTTGATCCGACCTAC
1 TGCAACTTCAGGGAGATAAGATTCATAACT-TTA-ATTTG---C-TCC-AC
* * * * *
6390474 TGCAACTTCAGAGG-TATAGGAATT-ATAGCTTTAATCTGCTCTAC
1 TGCAACTTCAG-GGAGATAAG-ATTCATAACTTTAATTTGCTCCAC
* * * *
6390518 TGCAACTTCAGAGAGATAAGATTCACTATCTTCAGTTTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTCA-TAACTTTAATTTGCTCCAC
* * * *
6390563 TACAACTTCAGGGAGATAAGACTCATAAGCTTTAACTTGCCCCAC
1 TGCAACTTCAGGGAGATAAGATTCATAA-CTTTAATTTGCTCCAC
* ** ** * * *
6390608 TGCAACTTCAAGGGA-ATAAGGTTTGTGGCTTCAATCTACTCCAC
1 TGCAACTTC-AGGGAGATAAGATTCATAACTTTAATTTGCTCCAC
* ** * * *
6390652 TACAACTTCAGGGAGATAAGATTCACCA-TGGTAGGTTTGATCCGACCTAC
1 TGCAACTTCAGGGAGATAAGATTCATAACT-TTA-ATTTG---C-TCC-AC
* * * * *
6390702 TGCAACTTCAGAGGA-ATAGGATTTATAGCTTTAATCTGCTCTAC
1 TGCAACTTCAG-GGAGATAAGATTCATAACTTTAATTTGCTCCAC
* * * * * * *
6390746 TGCAACTTTAGAGAGATAAGATTCGTTATCTTCAGTTTGCTTCAC
1 TGCAACTTCAGGGAGATAAGATTC-ATAACTTTAATTTGCTCCAC
* * *
6390791 TGCAACTTCAGGGAGATAAGACTCATAACTTTAACTTGCCCCAC
1 TGCAACTTCAGGGAGATAAGATTCATAACTTTAATTTGCTCCAC
* ** * * * * ** *
6390835 TGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTTTAT
1 TGCAACTTCAGGGAGATAAGATTCAT-AACTTTAAT-TTGCTCCAC
** ** * *
6390881 TGCAACTTCAGAAAGATAAGGATT-ATGGCTTTGATCTGCTCCAC
1 TGCAACTTCAGGGAGATAA-GATTCATAACTTTAATTTGCTCCAC
6390925 TGCAACTTCAGGGAGATAAGAT
1 TGCAACTTCAGGGAGATAAGAT
6390947 CTGTCATCTT
Statistics
Matches: 440, Mismatches: 136, Indels: 72
0.68 0.21 0.11
Matches are distributed among these distances:
43 20 0.05
44 188 0.43
45 136 0.31
46 30 0.07
47 3 0.01
48 2 0.00
49 10 0.02
50 41 0.09
51 10 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTCATAACTTTAATTTGCTCCAC
Found at i:6391009 original size:89 final size:87
Alignment explanation
Indices: 6390732--6391020 Score: 226
Period size: 89 Copynumber: 3.2 Consensus size: 87
6390722 ATTTATAGCT
* * * * **
6390732 TTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTCGTTATCTTCAGTTTGCTTCACTGCAAC
1 TTAACCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GTTATCTTCAGCCTGCTTCACTGCAAC
*
6390797 TTCAGGGAGATAAGAC-T-CATAAC
65 TTCAGAGAGATAAGACTTGC-T-AC
* * * * * * * *
6390820 TTTAACTTGCCCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTTTATTGCA
1 -TTAACCTGCTCCACTGCAACTTCAGGGAGATAA-GATTGT-TATCTTCAGCCTGCTTCACTGCA
* *
6390885 ACTTCAGAAAGATAAGGATTATGGCT--
63 ACTTCAGAGAGATAA-GACT-T-GCTAC
* * * * *
6390911 TTGATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTCATCTTCAGCCTGCTCCACTACAAC
1 TTAACCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTTATCTTCAGCCTGCTTCACTGCAAC
*
6390976 TTTAGAGAGATAAGACTTGCTAC
65 TTCAGAGAGATAAGACTTGCTAC
* *
6390999 TTCAACCTGCTCTACTACAACT
1 TT-AACCTGCTCCACTGCAACT
6391021 GCTTCACTGT
Statistics
Matches: 152, Mismatches: 37, Indels: 22
0.72 0.18 0.10
Matches are distributed among these distances:
86 3 0.02
87 1 0.01
88 5 0.03
89 74 0.49
90 64 0.42
91 2 0.01
93 1 0.01
94 1 0.01
95 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (87 bp):
TTAACCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTTATCTTCAGCCTGCTTCACTGCAACT
TCAGAGAGATAAGACTTGCTAC
Found at i:6395338 original size:9 final size:8
Alignment explanation
Indices: 6395323--6395362 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
6395313 AACCTATAAA
6395323 ATTTTTTT
1 ATTTTTTT
6395331 ATTTTTTT
1 ATTTTTTT
6395339 ATTTTTTT
1 ATTTTTTT
** *
6395347 CGTATTTT
1 ATTTTTTT
6395355 ATTTTTTT
1 ATTTTTTT
6395363 GTACTTTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (8 bp):
ATTTTTTT
Found at i:6395354 original size:17 final size:17
Alignment explanation
Indices: 6395334--6395371 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
6395324 TTTTTTTATT
6395334 TTTTTATTTTTTTCGTA-
1 TTTTTATTTTTTT-GTAC
6395351 -TTTTATTTTTTTGTAC
1 TTTTTATTTTTTTGTAC
6395367 TTTTT
1 TTTTT
6395372 TGATCACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 3 0.16
16 12 0.63
17 4 0.21
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTTATTTTTTTGTAC
Found at i:6398135 original size:8 final size:8
Alignment explanation
Indices: 6398094--6398159 Score: 53
Period size: 8 Copynumber: 7.9 Consensus size: 8
6398084 CTTTCTTCTC
*
6398094 TTTTTGAT
1 TTTTTTAT
6398102 TTTTTTGAAT
1 TTTTTT--AT
6398112 TTATTATTAT
1 TT-TT-TTAT
*
6398122 TATTTTAT
1 TTTTTTAT
*
6398130 TTTTTT-C
1 TTTTTTAT
6398137 TTTTTTAT
1 TTTTTTAT
*
6398145 TATTTTAT
1 TTTTTTAT
6398153 TTTTTTA
1 TTTTTTA
6398160 AGGTCTCAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
7 6 0.13
8 27 0.59
9 2 0.04
10 7 0.15
11 2 0.04
12 2 0.04
ACGTcount: A:0.18, C:0.02, G:0.03, T:0.77
Consensus pattern (8 bp):
TTTTTTAT
Found at i:6398144 original size:15 final size:15
Alignment explanation
Indices: 6398112--6398157 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
6398102 TTTTTTGAAT
6398112 TTATTATTATTATTTTA
1 TTATT-TTATT-TTTTA
* *
6398129 TTTTTTTCTTTTTTA
1 TTATTTTATTTTTTA
6398144 TTATTTTATTTTTT
1 TTATTTTATTTTTT
6398158 TAAGGTCTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
15 17 0.68
16 4 0.16
17 4 0.16
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (15 bp):
TTATTTTATTTTTTA
Found at i:6402923 original size:30 final size:30
Alignment explanation
Indices: 6402882--6402948 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
6402872 AAATCGAAAC
6402882 CCAACACGTTAGGGTACGATTTCTCAGATTT
1 CCAA-ACGTTAGGGTACGATTTCTCAGATTT
6402913 CCAAACGTTAGGGTACGATTTCTCAGATTT
1 CCAAACGTTAGGGTACGATTTCTCAGATTT
6402943 CCAAAC
1 CCAAAC
6402949 ATGGAACATT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 32 0.89
31 4 0.11
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (30 bp):
CCAAACGTTAGGGTACGATTTCTCAGATTT
Found at i:6411754 original size:21 final size:20
Alignment explanation
Indices: 6411706--6411762 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 20
6411696 TTAAATTTCA
6411706 AAAATTATAAAAAAA-ATAT
1 AAAATTATAAAAAAATATAT
* *
6411725 AAAAATATAAAAAAATCTGAT
1 AAAATTATAAAAAAATAT-AT
*
6411746 GAAATTATAAAAAAATA
1 AAAATTATAAAAAAATA
6411763 CTTTTCAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 14 0.45
20 1 0.03
21 16 0.52
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (20 bp):
AAAATTATAAAAAAATATAT
Found at i:6412098 original size:59 final size:59
Alignment explanation
Indices: 6412028--6412145 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
6412018 ATTATTTGAG
6412028 CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
1 CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
*
6412087 CCATTAGTTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
1 CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
6412146 TCAGTGTAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.47
Consensus pattern (59 bp):
CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
Found at i:6421649 original size:16 final size:16
Alignment explanation
Indices: 6421628--6421685 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
6421618 TTTGTGAGGA
6421628 TTTATTTTTAAAATAT
1 TTTATTTTTAAAATAT
*
6421644 TTTATTTATAAAAT-T
1 TTTATTTTTAAAATAT
* *
6421659 ATTATTTTAATAAATAAAT
1 TTTATTTT--TAAA-ATAT
6421678 TTTATTTT
1 TTTATTTT
6421686 AGAAAAAAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 7 0.21
16 13 0.39
17 4 0.12
18 1 0.03
19 8 0.24
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTATTTTTAAAATAT
Found at i:6424985 original size:19 final size:19
Alignment explanation
Indices: 6424960--6425050 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
6424950 ATAATCTTCA
6424960 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
6424979 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6424998 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6425015 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6425033 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
6425051 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:6425000 original size:14 final size:15
Alignment explanation
Indices: 6424981--6425036 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
6424971 TCTTAGATGT
6424981 GATATG-CAATCTTA
1 GATATGACAATCTTA
6424995 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
6425012 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
6425030 GATATGA
1 GATATGA
6425037 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:6425030 original size:35 final size:37
Alignment explanation
Indices: 6424960--6425057 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
6424950 ATAATCTTCA
*
6424960 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
6424998 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
6425033 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
6425058 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:6430785 original size:22 final size:22
Alignment explanation
Indices: 6430760--6430807 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
6430750 CTTCTATTTC
6430760 AAAAGCAAA-AAAAAGAAAGAAA
1 AAAAGCAAAGAAAAAGAAA-AAA
* *
6430782 AAAAGTAAAGAAAAAGAGAAAA
1 AAAAGCAAAGAAAAAGAAAAAA
6430804 AAAA
1 AAAA
6430808 TAAAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (22 bp):
AAAAGCAAAGAAAAAGAAAAAA
Found at i:6430811 original size:21 final size:20
Alignment explanation
Indices: 6430768--6430834 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 20
6430758 TCAAAAGCAA
* *
6430768 AAAAAAGAAAGAAAAAAAGT
1 AAAAAATAAAGAAAAAAAAT
6430788 AAAGAAA-AAGAGAAAAAAAAT
1 AAA-AAATAA-AGAAAAAAAAT
*
6430809 AAAAAATAAAAAATAAAAAAT
1 AAAAAATAAAGAA-AAAAAAT
6430830 AAAAA
1 AAAAA
6430835 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 11 0.27
21 30 0.73
ACGTcount: A:0.84, C:0.00, G:0.09, T:0.07
Consensus pattern (20 bp):
AAAAAATAAAGAAAAAAAAT
Found at i:6430812 original size:7 final size:7
Alignment explanation
Indices: 6430802--6430834 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
6430792 AAAAAGAGAA
6430802 AAAAAAT
1 AAAAAAT
6430809 AAAAAAT
1 AAAAAAT
6430816 AAAAAAT
1 AAAAAAT
6430823 AAAAAAT
1 AAAAAAT
6430830 AAAAA
1 AAAAA
6430835 TGGAGAGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:6431839 original size:43 final size:43
Alignment explanation
Indices: 6431791--6432016 Score: 141
Period size: 43 Copynumber: 5.3 Consensus size: 43
6431781 CGCCTTAATC
* *
6431791 CCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAAATCTTATCT
1 CCCTAAGCAGTAGGGTAACAAGTTAAAATTGCAGATCTTATCT
* * *
6431834 CCCTAAGCAGTAGTGG-AGC-AGATTGAAGAA-T-C-G-CCTTAAC-
1 CCCTAAGCAGTAG-GGTAACAAG-TT-AA-AATTGCAGATCTTATCT
* * *
6431874 CCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAAGTTAAAATTGCAGATCTTATCT
* * ** *
6431917 CCCTAAGCAGTAGTGG-AAC-AGAT-CAATGATGACTCACCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAAGTTAAAAT--TG-CAGATCTT-ATCT
* * * *
6431961 CCCTAAGCAGTAGGATAACAGGTCAAAATTGCGGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAAGTTAAAATTGCAGATCTTATCT
6432004 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
6432017 TGGAGCAGAT
Statistics
Matches: 138, Mismatches: 25, Indels: 40
0.68 0.12 0.20
Matches are distributed among these distances:
38 2 0.01
39 5 0.04
40 17 0.12
41 10 0.07
42 12 0.09
43 54 0.39
44 30 0.22
45 5 0.04
46 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAAGTTAAAATTGCAGATCTTATCT
Found at i:6431888 original size:83 final size:84
Alignment explanation
Indices: 6431781--6432070 Score: 397
Period size: 83 Copynumber: 3.4 Consensus size: 84
6431771 CAAAATTCAG
* * *
6431781 CGCCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
6431846 GTGGAGCAGATTGAAGAAT
66 GTGGAGCAGATTGAAGAAT
* *
6431865 CGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
* * *
6431929 GTGGAACAGATCAATGATGACT
66 GTGGAGCAGAT---TGAAGAAT
* * * *
6431951 CACCTTAATCCCCTAAGCAGTAGGATAACAGGTCAAAATTGCGGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
*
6432016 GTGGAGCAGATCGAAG-AT
66 GTGGAGCAGATTGAAGAAT
*
6432034 GCGCCTTAA-CCCCTAAGTAGTAGGGTAACAGGTTAAA
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
6432071 GCATAGCAGA
Statistics
Matches: 179, Mismatches: 22, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
83 87 0.49
84 18 0.10
86 13 0.07
87 61 0.34
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATTGAAGAAT
Found at i:6432432 original size:207 final size:207
Alignment explanation
Indices: 6432072--6433072 Score: 1565
Period size: 207 Copynumber: 4.8 Consensus size: 207
6432062 CAGGTTAAAG
6432072 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* *
6432137 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGAGGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* * *
6432202 TAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCAAATTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
6432267 GGAGGGCAGACA
196 GGAGGGCAGACA
* * *
6432279 CATAGCAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCAAGCTGGTTTGGCATCCTTAT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * *
6432344 GCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
*
6432409 TAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
6432474 GGAGGGCAGACA
196 GGAGGGCAGACA
* * *
6432486 CATAGCAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCTAGCTGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * *
6432551 GCTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* *
6432616 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTTTCCATATTCGAT
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
6432681 GGAGGGCAGACA
196 GGAGGGCAGACA
* *
6432693 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAACAAGATCCAAGATGGTTTGGCATCTTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * * *
6432758 GCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
*
6432823 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
** * *
6432888 AAAGGACAAACA
196 GGAGGGCAGACA
* ** * * * *
6432900 TATAGCAGATCTAACCTTCAGATGATGAGACTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* ** * * *
6432964 GCTTACAATGAGTAAATCGAAGACATAGCTGATTTGGCTTTCGCATGTTTACGCTGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* *
6433029 TAAGATGATTTGGCATCTCTGTATTTTCAG-GAAACAAATTGAAG
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAG-AACAAATCGAAG
6433073 AAGCAGATTT
Statistics
Matches: 740, Mismatches: 53, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
205 1 0.00
206 125 0.17
207 614 0.83
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
GGAGGGCAGACA
Found at i:6433446 original size:17 final size:18
Alignment explanation
Indices: 6433433--6433592 Score: 104
Period size: 18 Copynumber: 8.9 Consensus size: 18
6433423 TAATCTTCAA
6433433 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
6433452 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
6433469 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
6433488 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
6433504 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
6433523 TGAT-TGCAATATTAGA-
1 TGATATGCAATCTTAGAG
* * *
6433539 T-ATGATACAATATTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
6433558 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
6433576 TGATATGCAATCTTAGA
1 TGATATGCAATCTTAGA
6433593 AGATATGATT
Statistics
Matches: 118, Mismatches: 8, Indels: 30
0.76 0.05 0.19
Matches are distributed among these distances:
15 4 0.03
16 4 0.03
17 35 0.30
18 37 0.31
19 32 0.27
20 6 0.05
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:6433502 original size:35 final size:35
Alignment explanation
Indices: 6433440--6433592 Score: 252
Period size: 35 Copynumber: 4.3 Consensus size: 35
6433430 CAATGATATG
*
6433440 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
6433476 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
6433511 CAATCTTAGATATGATTGCAATATTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
6433546 CAATATTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
6433581 TGCAATCTTAGA
1 --CAATCTTAGA
6433593 AGATATGATT
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 86 0.78
36 15 0.14
37 9 0.08
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:6433599 original size:17 final size:19
Alignment explanation
Indices: 6433432--6433592 Score: 232
Period size: 17 Copynumber: 8.9 Consensus size: 19
6433422 ATAATCTTCA
6433432 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
6433451 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6433470 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6433487 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6433505 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
6433522 ATGAT-TGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
*
6433540 ATGATA--CAATATTAGAT
1 ATGATATGCAATCTTAGAT
6433557 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
6433575 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
6433593 AGATATGATT
Statistics
Matches: 129, Mismatches: 4, Indels: 18
0.85 0.03 0.12
Matches are distributed among these distances:
17 48 0.37
18 46 0.36
19 35 0.27
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:6434884 original size:43 final size:42
Alignment explanation
Indices: 6434809--6434917 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
6434799 TTACAGCGCT
* * ** *
6434809 CCGCTAAAGAACATGACATTTAGCGGCGCTTTTTCAACAAACG
1 CCGCTAAAAAACATGAC-TTTAACGGAACTTTTCCAACAAACG
*
6434852 CCGCTAAAAAACATGATCTTTAACGGAACTTTTCCCACAAACG
1 CCGCTAAAAAACATGA-CTTTAACGGAACTTTTCCAACAAACG
*
6434895 CCGCTAAAAAACATAACCTTTAA
1 CCGCTAAAAAACATGA-CTTTAA
6434918 AAAATGTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 56 0.98
44 1 0.02
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.23
Consensus pattern (42 bp):
CCGCTAAAAAACATGACTTTAACGGAACTTTTCCAACAAACG
Found at i:6436523 original size:15 final size:16
Alignment explanation
Indices: 6436489--6436525 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
6436479 ACCCAACCTA
*
6436489 ACCCAAAACCCAGAAG
1 ACCCAAAACCCACAAG
6436505 -CCCAAAACCC-CAAG
1 ACCCAAAACCCACAAG
6436519 ACCCAAA
1 ACCCAAA
6436526 TCAGAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.49, C:0.43, G:0.08, T:0.00
Consensus pattern (16 bp):
ACCCAAAACCCACAAG
Found at i:6437604 original size:25 final size:26
Alignment explanation
Indices: 6437561--6437640 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
6437551 ATACTATATC
* *
6437561 ATATATAAATATGCATTTTTCATATTA-
1 ATATATATATATG--TTTTTAATATTAT
6437588 ATATATATATATGTTTTTAATATTAT
1 ATATATATATATGTTTTTAATATTAT
*
6437614 ATTATCATGTATATG-TTTTAATATTAT
1 A-TAT-ATATATATGTTTTTAATATTAT
6437641 TAGCTATCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 11 0.23
26 1 0.02
27 27 0.57
28 8 0.17
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.54
Consensus pattern (26 bp):
ATATATATATATGTTTTTAATATTAT
Found at i:6437817 original size:21 final size:21
Alignment explanation
Indices: 6437776--6437817 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6437766 TCTAATATAA
* *
6437776 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
6437797 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
6437818 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:6438224 original size:21 final size:21
Alignment explanation
Indices: 6438200--6438251 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
6438190 ACTATTATTT
* *
6438200 TATTTATTTTTATTCCTAGTA
1 TATTTATTTTTAATACTAGTA
* *
6438221 TATTTATTATTAATATTAGTA
1 TATTTATTTTTAATACTAGTA
*
6438242 TATGTATTTT
1 TATTTATTTT
6438252 ATTATACGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (21 bp):
TATTTATTTTTAATACTAGTA
Found at i:6453557 original size:15 final size:14
Alignment explanation
Indices: 6453526--6453561 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
6453516 CGCTAAGATA
*
6453526 TTTTCAATTTCTGC
1 TTTTCAAATTCTGC
6453540 TTTTCAAATTCTGC
1 TTTTCAAATTCTGC
*
6453554 CTTTCAAA
1 TTTTCAAA
6453562 AAAATCAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (14 bp):
TTTTCAAATTCTGC
Found at i:6453684 original size:87 final size:88
Alignment explanation
Indices: 6453472--6453684 Score: 275
Period size: 89 Copynumber: 2.4 Consensus size: 88
6453462 TTCTGTTTTC
* ** *
6453472 AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGGCACGCTAAGATATTTTCAATTTC
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGATATTTTCAATTTC
** *
6453537 TGCTTTTCAAATTCTGCCTTTCAA
66 CACTTTTCAAATTATG-CTTTCAA
* *
6453561 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGATATTTTCAATTTC
* * *
6453626 CATTTTTCGATTTATG-TTTCAA
66 CACTTTTCAAATTATGCTTTCAA
* **
6453648 AGAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
6453685 TTTAATTTCT
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
87 40 0.37
89 69 0.63
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (88 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGATATTTTCAATTTC
CACTTTTCAAATTATGCTTTCAA
Found at i:6453897 original size:56 final size:54
Alignment explanation
Indices: 6453650--6453902 Score: 416
Period size: 54 Copynumber: 4.6 Consensus size: 54
6453640 TGTTTCAAAG
*
6453650 AAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAA
* *
6453704 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTTAATTTCTATTTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAA
6453758 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAA
* * * *
6453812 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTCAATTTATATTTTTTCAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCT-GTTTTTC-AA
*
6453868 AAATCAACTCATATTGCGAGAGGTCAGTTGAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
6453903 CGGGTCACAT
Statistics
Matches: 186, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
54 145 0.78
55 6 0.03
56 35 0.19
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.37
Consensus pattern (54 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAA
Found at i:6454207 original size:44 final size:44
Alignment explanation
Indices: 6454138--6454249 Score: 188
Period size: 44 Copynumber: 2.5 Consensus size: 44
6454128 ACCAGAGTTG
* *
6454138 GCCTCTCTGAAGTTGCGATGGAGCAGGTCAAAGTTGCAAGTCTT
1 GCCTCCCTGAAGTTGCGGTGGAGCAGGTCAAAGTTGCAAGTCTT
*
6454182 GCTTCCCTGAAGTTGCGGTGGAGCAGGTCAAAGTTGCAAGTCTT
1 GCCTCCCTGAAGTTGCGGTGGAGCAGGTCAAAGTTGCAAGTCTT
*
6454226 GCCTCCCTGAAGTTGCAGTGGAGC
1 GCCTCCCTGAAGTTGCGGTGGAGC
6454250 TGATCGAGGA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (44 bp):
GCCTCCCTGAAGTTGCGGTGGAGCAGGTCAAAGTTGCAAGTCTT
Found at i:6456003 original size:25 final size:23
Alignment explanation
Indices: 6455975--6456022 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
6455965 ACTATATCAT
*
6455975 ATATACATATGCATTTTTCATATTA
1 ATATACATATG--TTTTTAATATTA
*
6456000 ATATATATATGTTTTTAATATTA
1 ATATACATATGTTTTTAATATTA
6456023 TATTATCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 11 0.52
25 10 0.48
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (23 bp):
ATATACATATGTTTTTAATATTA
Found at i:6456233 original size:21 final size:21
Alignment explanation
Indices: 6456191--6456233 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6456181 CTAATATAAA
* *
6456191 TATATATATATCATATAGGTT
1 TATATACATATCATACAGGTT
*
6456212 TATATACATATCATACATGTT
1 TATATACATATCATACAGGTT
6456233 T
1 T
6456234 CTTTATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (21 bp):
TATATACATATCATACAGGTT
Found at i:6456895 original size:19 final size:18
Alignment explanation
Indices: 6456871--6456914 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
6456861 TTTTATATAT
6456871 TATGTATGTATA-TATTAC
1 TATGTAT-TATAGTATTAC
*
6456889 ATATGTATTTTAGTATTAC
1 -TATGTATTATAGTATTAC
6456908 TATGTAT
1 TATGTAT
6456915 ACACTTTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (18 bp):
TATGTATTATAGTATTAC
Found at i:6459164 original size:20 final size:20
Alignment explanation
Indices: 6459139--6459200 Score: 97
Period size: 20 Copynumber: 3.0 Consensus size: 20
6459129 CTCATTTTCA
6459139 ATTTTTTTTCTTTTTCTTTT
1 ATTTTTTTTCTTTTTCTTTT
6459159 ATTTTTTTTCTTTTTCTTTT
1 ATTTTTTTTCTTTTTCTTTT
6459179 ATTTTTTTCTTCTTTTTTCTTT
1 A-TTTTTT-TTC-TTTTTCTTT
6459201 CAAATTTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
20 21 0.54
21 6 0.15
22 3 0.08
23 9 0.23
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (20 bp):
ATTTTTTTTCTTTTTCTTTT
Found at i:6459166 original size:14 final size:13
Alignment explanation
Indices: 6459140--6459201 Score: 63
Period size: 13 Copynumber: 4.7 Consensus size: 13
6459130 TCATTTTCAA
6459140 TTTTTTTTCTTTT
1 TTTTTTTTCTTTT
*
6459153 TCTTTTATT-TTTT
1 T-TTTTTTTCTTTT
*
6459166 TTCTTTTTCTTTT
1 TTTTTTTTCTTTT
*
6459179 ATTTTTTTCTTCTT
1 TTTTTTTTCTT-TT
*
6459193 TTTTCTTTC
1 TTTTTTTTC
6459202 AAATTTGTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
12 5 0.13
13 19 0.49
14 15 0.38
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTTTCTTTT
Found at i:6462979 original size:19 final size:19
Alignment explanation
Indices: 6462955--6462991 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6462945 TTTAAACATT
6462955 AAAAATATTAAAAATTATA
1 AAAAATATTAAAAATTATA
* *
6462974 AAAAATTTTAAAATTTAT
1 AAAAATATTAAAAATTAT
6462992 TTAATTGCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATATTAAAAATTATA
Found at i:6465633 original size:6 final size:6
Alignment explanation
Indices: 6465622--6465664 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
6465612 ATGTCCTTGG
* * *
6465622 TATTTT TATTTT TATTAT TATTTAT TACTAT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTT-T TATTTT TATTTT TATTTT
6465665 GATGCCACTC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (6 bp):
TATTTT
Found at i:6465920 original size:3 final size:3
Alignment explanation
Indices: 6465912--6465952 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
6465902 GTATTTCTAC
*
6465912 ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
6465953 ATATAGTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:6466619 original size:4 final size:4
Alignment explanation
Indices: 6466610--6466651 Score: 66
Period size: 4 Copynumber: 10.5 Consensus size: 4
6466600 TTCGCCATGT
* *
6466610 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA CTTA TGTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
6466652 CGATCATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:6472931 original size:12 final size:12
Alignment explanation
Indices: 6472916--6472950 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
6472906 TAAAAAATTA
6472916 TAAAAAATTCTT
1 TAAAAAATTCTT
6472928 TAAAAAATTCTT
1 TAAAAAATTCTT
6472940 TAAAAAATTCT
1 TAAAAAATTCT
6472951 AAAAATTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (12 bp):
TAAAAAATTCTT
Found at i:6472953 original size:10 final size:10
Alignment explanation
Indices: 6472901--6472960 Score: 57
Period size: 10 Copynumber: 5.6 Consensus size: 10
6472891 AACTTAGGTT
*
6472901 AATTATAAAA
1 AATTCTAAAA
*
6472911 AATTATAAAA
1 AATTCTAAAA
6472921 AATTCTTTAAAA
1 AATTC--TAAAA
6472933 AATTCTTTAAAA
1 AATTC--TAAAA
6472945 AATTCTAAAA
1 AATTCTAAAA
*
6472955 ATTTCT
1 AATTCT
6472961 CTAATAGTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
10 24 0.52
12 22 0.48
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (10 bp):
AATTCTAAAA
Found at i:6472963 original size:12 final size:12
Alignment explanation
Indices: 6472916--6472964 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
6472906 TAAAAAATTA
*
6472916 TAAAAAATTCTT
1 TAAAAAATTCTC
*
6472928 TAAAAAATTCTT
1 TAAAAAATTCTC
6472940 TAAAAAA-T-TC
1 TAAAAAATTCTC
*
6472950 TAAAAATTTCTC
1 TAAAAAATTCTC
6472962 TAA
1 TAA
6472965 TAGTTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 7 0.21
11 2 0.06
12 24 0.73
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (12 bp):
TAAAAAATTCTC
Found at i:6478124 original size:62 final size:62
Alignment explanation
Indices: 6478058--6478174 Score: 216
Period size: 62 Copynumber: 1.9 Consensus size: 62
6478048 TCTCTTCCTT
6478058 CATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCGTTCATG
1 CATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCGTTCATG
* *
6478120 CATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAGTACGC
1 CATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGC
6478175 CGAGTTTAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.32
Consensus pattern (62 bp):
CATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCGTTCATG
Found at i:6480964 original size:88 final size:89
Alignment explanation
Indices: 6480820--6481478 Score: 629
Period size: 88 Copynumber: 7.4 Consensus size: 89
6480810 ATAGGTCCTA
* * *
6480820 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGATACAGATCTTGTCTTCCCATATTGGTGACGAA
1 TCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGACGAA
* * *
6480884 GTAGATCGAAGGTAGCAGATCCTA
66 GTAGATCGAAGATAGCAGATCTTG
* *
6480908 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
1 TCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGACGAA
* * *
6480972 GTAGATTGCAGAAAGCAGATCTTG
66 GTAGATCGAAGATAGCAGATCTTG
* * * * * * * * *
6480996 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGT-AGGA
1 TCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGACGA
* *
6481059 AGTGGATCAAAGATA-CAGATCTTG
65 AGTAGATCGAAGATAGCAGATCTTG
* * * *** * *
6481083 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCG-TGA
1 TCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGACGA
* * *
6481147 AGTAGATCGAAGGTAGCAGATCCTA
65 AGTAGATCGAAGATAGCAGATCTTG
* * * *
6481172 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGATACAGATCTTGTCTTCCCATATTGGTGGCGAA
1 TCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGACGAA
*
6481236 GTAGATCGAAGAAAGCAGATCTTG
66 GTAGATCGAAGATAGCAGATCTTG
* * * * * ** * *
6481260 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCGGTCTTCCTATATTGGT-AGGA
1 TCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGACGA
* *
6481323 AGTGGATCAAAGATA-CAGATCTTG
65 AGTAGATCGAAGATAGCAGATCTTG
* * * * * * *
6481347 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACGTATTTGGCG-TG
1 TCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATA-TTGGTGACG
*
6481411 AAGTAGATCGAAGATTGCAGATCTTG
64 AAGTAGATCGAAGATAGCAGATCTTG
* * * *
6481437 CCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATGGCAGAT
1 TCTTCCTATA-TTGGTAGCGAAGTAGATCGAAGAT-GCAGAT
6481479 TTTACCTCCC
Statistics
Matches: 459, Mismatches: 96, Indels: 29
0.79 0.16 0.05
Matches are distributed among these distances:
87 64 0.14
88 270 0.59
89 83 0.18
90 17 0.04
91 25 0.05
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (89 bp):
TCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGACGAA
GTAGATCGAAGATAGCAGATCTTG
Found at i:6481078 original size:132 final size:132
Alignment explanation
Indices: 6480820--6481433 Score: 1025
Period size: 132 Copynumber: 4.7 Consensus size: 132
6480810 ATAGGTCCTA
* * * * * *** * *
6480820 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGATA-CAGATCTTGTCTTCCCATATTGGTGACGA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCG-TGA
* *
6480883 AGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATC
65 AGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATC
6480948 TTG
130 TTG
* *
6480951 TCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
6481016 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
66 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
6481081 TG
131 TG
6481083 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
6481148 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
66 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
6481213 TG
131 TG
6481215 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
**
6481280 GTAGATCGAAGGTAGCAGATCCGGTCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
66 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
6481345 TG
131 TG
*
6481347 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACGTATTTGGCGTGA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA-TTGGCGTGA
* *
6481412 AGTAGATCGAAGATTGCAGATC
65 AGTAGATCGAAGGTAGCAGATC
6481434 TTGCCTTCCT
Statistics
Matches: 459, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
131 15 0.03
132 394 0.86
133 50 0.11
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
TG
Found at i:6481573 original size:134 final size:134
Alignment explanation
Indices: 6481399--6482066 Score: 1133
Period size: 134 Copynumber: 5.0 Consensus size: 134
6481389 TTGTCTTCAC
* *
6481399 GTATTTGGC-GT-GAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGAA
1 GTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
* * *
6481462 GATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
65 GATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
6481527 TCCCT
130 TCCCT
6481532 GTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAG
1 GTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAG
*
6481597 ATCAAAGATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCT
66 ATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCT
6481662 CCCT
131 CCCT
*
6481666 GTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAG
1 GTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAG
6481731 ATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCT
66 ATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCT
*
6481796 CTCT
131 CCCT
6481800 GTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAG
1 GTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAG
6481865 ATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCT
66 ATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCT
*
6481930 CTCT
131 CCCT
*
6481934 GTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAG
1 GTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAG
* ** * * ** * **
6481999 GTTGAAGACGGCAGATTTTACCTCTCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTATCT
66 ATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCT
6482064 CCC
131 CCC
6482067 GGGGCAAGAA
Statistics
Matches: 512, Mismatches: 21, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
133 9 0.02
134 500 0.98
135 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (134 bp):
GTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAG
ATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCT
CCCT
Found at i:6482237 original size:45 final size:43
Alignment explanation
Indices: 6482134--6482237 Score: 100
Period size: 43 Copynumber: 2.4 Consensus size: 43
6482124 GATCGAATAT
* * * * *
6482134 AGCAGATCCTATCTTCCTATACTGGTAGGAAGTGGATCGACAA
1 AGCAGATCTTATCTTCCCATACTGGTAGGAAATAGACCGACAA
* ** * *
6482177 TGCAGATCTCGTCTTCCCATACTGGTGGCGAAATAGACCGAAGAA
1 AGCAGATCTTATCTTCCCATACTGGTAG-GAAATAGACCG-ACAA
6482222 AGCAGATCTTATCTTC
1 AGCAGATCTTATCTTC
6482238 ATATATTGGC
Statistics
Matches: 46, Mismatches: 13, Indels: 2
0.75 0.21 0.03
Matches are distributed among these distances:
43 22 0.48
44 8 0.17
45 16 0.35
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (43 bp):
AGCAGATCTTATCTTCCCATACTGGTAGGAAATAGACCGACAA
Found at i:6482287 original size:44 final size:45
Alignment explanation
Indices: 6482074--6482291 Score: 196
Period size: 44 Copynumber: 4.9 Consensus size: 45
6482064 CCCGGGGCAA
* * * *
6482074 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTCGT
* * * *
6482118 GAAGTAGATCGAATATAGCAGATCCTATCTTCCTATACTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTCGT
* * * * *
6482162 GAAGTGGATCGACA-AT-GCAGAT-CTCGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGA-AGATAGCAGATCCT-GTCTTCCTATATTGGTCGT
* * * * * *
6482206 GAAATAGACCGAAGAAAGCAGATCTTATCTTCATATATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTCGT
*
6482250 GAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTATATTGGT
1 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGT
6482292 AGGAAGTGGA
Statistics
Matches: 136, Mismatches: 30, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
42 2 0.01
43 22 0.16
44 92 0.68
45 19 0.14
46 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (45 bp):
GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTCGT
Found at i:6486636 original size:19 final size:19
Alignment explanation
Indices: 6486614--6486683 Score: 77
Period size: 19 Copynumber: 3.6 Consensus size: 19
6486604 GTACCCGATT
6486614 ACTACCCAGCAGGCCTAAA
1 ACTACCCAGCAGGCCTAAA
* * **
6486633 ACTACCCAGCAGACCCATTT
1 ACTACCCAGCAGGCCTA-AA
* *
6486653 ACTACCCATCAGGCTTAAA
1 ACTACCCAGCAGGCCTAAA
6486672 ACTACCCAGCAG
1 ACTACCCAGCAG
6486684 ACCCATTTAC
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
19 26 0.67
20 13 0.33
ACGTcount: A:0.34, C:0.37, G:0.13, T:0.16
Consensus pattern (19 bp):
ACTACCCAGCAGGCCTAAA
Found at i:6486655 original size:39 final size:39
Alignment explanation
Indices: 6486612--6486697 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
6486602 GTGTACCCGA
6486612 TTACTACCCAGCAGGCCTAAAACTACCCAGCAGACCCAT
1 TTACTACCCAGCAGGCCTAAAACTACCCAGCAGACCCAT
* *
6486651 TTACTACCCATCAGGCTTAAAACTACCCAGCAGACCCAT
1 TTACTACCCAGCAGGCCTAAAACTACCCAGCAGACCCAT
6486690 TTAC-ACCC
1 TTACTACCC
6486698 TTGACCCAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 4 0.09
39 41 0.91
ACGTcount: A:0.33, C:0.38, G:0.10, T:0.19
Consensus pattern (39 bp):
TTACTACCCAGCAGGCCTAAAACTACCCAGCAGACCCAT
Found at i:6486658 original size:20 final size:20
Alignment explanation
Indices: 6486633--6486697 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 20
6486623 CAGGCCTAAA
6486633 ACTACCCAGCAGACCCATTT
1 ACTACCCAGCAGACCCATTT
* * ** **
6486653 ACTACCCATCAGGCTTA-AA
1 ACTACCCAGCAGACCCATTT
6486672 ACTACCCAGCAGACCCATTT
1 ACTACCCAGCAGACCCATTT
6486692 AC-ACCC
1 ACTACCC
6486698 TTGACCCAAA
Statistics
Matches: 32, Mismatches: 12, Indels: 3
0.68 0.26 0.06
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.32, C:0.40, G:0.09, T:0.18
Consensus pattern (20 bp):
ACTACCCAGCAGACCCATTT
Found at i:6488482 original size:20 final size:20
Alignment explanation
Indices: 6488357--6488485 Score: 64
Period size: 20 Copynumber: 5.8 Consensus size: 20
6488347 ATATTATTTC
* **
6488357 ATATTATTATTATTTATTAT
1 ATATTATTTTTACATATTAT
*
6488377 ATATTATTTTTCACAAATTAT
1 ATATTATTTTT-ACATATTAT
6488398 -TATTA-TTTTACATTATTAT
1 ATATTATTTTTACA-TATTAT
* *
6488417 CTATATATTTCTTACTTGTATTGTAT
1 ATAT-TATTT-TTAC--ATA-T-TAT
6488443 ATTTATTAATTATTTATACATATTAT
1 A--TATT-A-T-TTT-TACATATTAT
6488469 ATATTATTTTTACATAT
1 ATATTATTTTTACATAT
6488486 ATACACTTTC
Statistics
Matches: 85, Mismatches: 8, Indels: 32
0.68 0.06 0.26
Matches are distributed among these distances:
18 3 0.04
19 9 0.11
20 25 0.29
21 11 0.13
22 3 0.04
23 5 0.06
24 6 0.07
25 1 0.01
26 7 0.08
27 2 0.02
28 6 0.07
29 2 0.02
30 5 0.06
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (20 bp):
ATATTATTTTTACATATTAT
Found at i:6488737 original size:23 final size:23
Alignment explanation
Indices: 6488711--6488777 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 23
6488701 ATTAATTACT
* *
6488711 TATTTTATACTTATATTTA-TATA
1 TATTATATAATTAT-TTTACTATA
6488734 TATTATATAATTATTTTACTATA
1 TATTATATAATTATTTTACTATA
* *
6488757 -AATATA-AATTCTTTTAC-ATA
1 TATTATATAATTATTTTACTATA
6488777 T
1 T
6488778 TAAGTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
20 3 0.08
21 10 0.26
22 9 0.24
23 16 0.42
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTATATAATTATTTTACTATA
Found at i:6488756 original size:21 final size:21
Alignment explanation
Indices: 6488706--6488779 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
6488696 TCATCATTAA
* *
6488706 TTACT-TATTTTATACTTATAT
1 TTACTATATTATATAATTAT-T
*
6488727 TTATATATATTATATAATTATT
1 TTA-CTATATTATATAATTATT
* *
6488749 TTACTATA-AATATAAATTCTT
1 TTACTATATTATAT-AATTATT
6488770 TTAC-ATATTA
1 TTACTATATTA
6488780 AGTATTTTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
20 7 0.17
21 18 0.43
22 5 0.12
23 12 0.29
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
TTACTATATTATATAATTATT
Found at i:6490397 original size:15 final size:15
Alignment explanation
Indices: 6490377--6490419 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
6490367 ATGGCATTAA
6490377 AATATATATATACAT
1 AATATATATATACAT
*
6490392 AATATATATA-AAAT
1 AATATATATATACAT
6490406 ACATATATATATAC
1 A-ATATATATATAC
6490420 GTATTAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 4 0.17
15 19 0.79
16 1 0.04
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (15 bp):
AATATATATATACAT
Found at i:6490756 original size:11 final size:11
Alignment explanation
Indices: 6490723--6490765 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
6490713 AAATCATTTT
6490723 GAAGAGAGAAA
1 GAAGAGAGAAA
* * *
6490734 GAAAAAAAAAA
1 GAAGAGAGAAA
*
6490745 GAAGGGAGAAA
1 GAAGAGAGAAA
6490756 GAAGAGAGAA
1 GAAGAGAGAA
6490766 GGGAGGGGGG
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Done.