Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 210 of 316
Found at i:68486229 original size:40 final size:40
Alignment explanation
Indices: 68486124--68486256 Score: 144
Period size: 40 Copynumber: 3.3 Consensus size: 40
68486114 CGTATAACCC
* * * *
68486124 GTAATTCAT-CAGTAAT-AACAATAATTTATCCATATCAACA
1 GTAATTCATCCA-T-ATCAACAATAATTCATTCATTTCAATA
* * * *
68486164 GTAATTCATCTATATTAATAGTAATTCATTCATTTCAATA
1 GTAATTCATCCATATCAACAATAATTCATTCATTTCAATA
* *
68486204 GTAATTCACCCATATCAACAATAATTCATTCAATTCAATA
1 GTAATTCATCCATATCAACAATAATTCATTCATTTCAATA
68486244 GTAATTCATCCAT
1 GTAATTCATCCAT
68486257 TAATAAAATA
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.03
40 74 0.96
41 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.37
Consensus pattern (40 bp):
GTAATTCATCCATATCAACAATAATTCATTCATTTCAATA
Found at i:68486518 original size:23 final size:23
Alignment explanation
Indices: 68486474--68486528 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
68486464 AGCTAATAAA
* *
68486474 CAGTAAGCTCTATCGAGTTGAAT
1 CAGTAAGCTCTATCGAGCTGAAG
*
68486497 CGGTAAGCTCTAAT-GAGCTGAAG
1 CAGTAAGCTCT-ATCGAGCTGAAG
68486520 CAGTAAGCT
1 CAGTAAGCT
68486529 TTTACAACCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 25 0.93
24 2 0.07
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (23 bp):
CAGTAAGCTCTATCGAGCTGAAG
Found at i:68495244 original size:47 final size:45
Alignment explanation
Indices: 68495173--68495533 Score: 248
Period size: 47 Copynumber: 7.7 Consensus size: 45
68495163 TGATTTGTGC
* *
68495173 GCCAGTGTAAGACATGTCTGGGACATGCTTCGACCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACA-GATGAGA
* ** *
68495219 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATC-CAGACAAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC-G-ACCACAGATGAGA
* * * * *
68495267 GCTAGTGTAAGATATGTCTGGGACATGCATC-AGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGA-CCACA-GATGAGA
* * * * *
68495313 GCTAGTGTACGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CACAGATGAGA
* *
68495361 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GAC-C-ACAGATGAGA
* * * * * * *
68495408 GCTAGTGTAAGACGTGTTTGGGACATGAATCGACTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAGATG-AGA
* * *
68495452 GCTAGTGTAAGACATGTCTGGGACATGCATC-ATCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGA-C-CAC--AGATGAGA
68495500 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
68495534 GCAATATATC
Statistics
Matches: 245, Mismatches: 47, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.02
44 31 0.13
45 1 0.00
46 37 0.15
47 86 0.35
48 56 0.23
49 21 0.09
50 7 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAGATGAGA
Found at i:68495337 original size:94 final size:92
Alignment explanation
Indices: 68495176--68495534 Score: 358
Period size: 94 Copynumber: 3.8 Consensus size: 92
68495166 TTTGTGCGCC
* * *
68495176 AGTGTAAGACATGTCTGGGACATGCTTC-GACCACATTATGAGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CCATACTATGAGAGCCAGTGTAAGACCATGTCTG
* *
68495240 GGACATGGCATCGGTATCCAGACAAGGGCT
65 GGACATGGCATCGG-A-CCAGAGAAGTGCT
* * * *
68495270 AGTGTAAGATATGTCTGGGACATGCATCAGCCATACTATGATAGCTAGTGTACGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
*
68495335 GACATGGCATCGG-CACAGAGATGAGTGCC
66 GACATGGCATCGGAC-CAGAGA--AGTGCT
* *
68495364 AGTGTAAGACATGTCTGGGACATGCATCAGCC-TCGAC-A-GAGATAGCTAGTGTAAGA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCATGT
* * * **
68495425 TTGGGACAT-GAATC-GACTAAGAGTTGTGCT
62 CTGGGACATGGCATCGGAC-CAGAGAAGTGCT
* *
68495455 AGTGTAAGACATGTCTGGGACATGCATCATCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCA--GC-CATACTATGAGAGCCAGTGTAAGACCATGTC
68495519 TGGGACATGGCATCGG
63 TGGGACATGGCATCGG
68495535 CAATATATCC
Statistics
Matches: 221, Mismatches: 26, Indels: 35
0.78 0.09 0.12
Matches are distributed among these distances:
91 34 0.15
92 18 0.08
93 27 0.12
94 125 0.57
95 17 0.08
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGACCAGAGAAGTGCT
Found at i:68497178 original size:17 final size:18
Alignment explanation
Indices: 68497147--68497182 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
68497137 CATGTGGCTT
68497147 GCCCGTGTCGGCCCACAC
1 GCCCGTGTCGGCCCACAC
68497165 GCCCGTGT-GGCCCACAC
1 GCCCGTGTCGGCCCACAC
68497182 G
1 G
68497183 GCCAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.11, C:0.47, G:0.31, T:0.11
Consensus pattern (18 bp):
GCCCGTGTCGGCCCACAC
Found at i:68499710 original size:20 final size:20
Alignment explanation
Indices: 68499680--68499741 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
68499670 CAAAGCTAAG
68499680 TATACTTTCACATATAAACT
1 TATACTTTCACATATAAACT
* *
68499700 TATGA-TTTCACATAT-ATCA
1 TAT-ACTTTCACATATAAACT
68499719 TATACTTTCACATATAAACT
1 TATACTTTCACATATAAACT
68499739 TAT
1 TAT
68499742 TTATGGCCGA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 1 0.03
19 15 0.43
20 18 0.51
21 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.42
Consensus pattern (20 bp):
TATACTTTCACATATAAACT
Found at i:68499729 original size:19 final size:19
Alignment explanation
Indices: 68499680--68499735 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
68499670 CAAAGCTAAG
*
68499680 TATACTTTCACATATAAACT
1 TATACTTTCACATAT-AACA
*
68499700 TATGA-TTTCACATATATCA
1 TAT-ACTTTCACATATAACA
68499719 TATACTTTCACATATAA
1 TATACTTTCACATATAA
68499736 ACTTATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 1 0.03
19 16 0.52
20 13 0.42
21 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (19 bp):
TATACTTTCACATATAACA
Found at i:68500244 original size:45 final size:45
Alignment explanation
Indices: 68500103--68500362 Score: 191
Period size: 45 Copynumber: 6.0 Consensus size: 45
68500093 ATATCAAACA
* ** **
68500103 ATGCCAACGTCCCAGACATGGTCTTACATGTCA-T-CGCATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAACTACATATATCG
* * * *
68500146 ATGCC-ACTGTCCCAGATAGGGTCTCACACG-AA-T-CAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAACTACATATATCG
* * *
68500187 ATGCCGATGTCCCAGACATGGTCTTACACGTAACTACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAACTACATATATCG
* *
68500232 ATGCCAACGTCCCAGACGTAGTCTTACACGAAAAC-ACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAACTACATATATCG
* * ** * * *
68500277 ATGCCGACGTCCCAAATGTGGTTTTACATGAAAAC-ACATATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAACTACATATATCG
* * * *
68500322 ATGCCAACATCCCATACGTAGTCTTACACGAAA--ACATATAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAACTACATATAT
68500363 TGAAATCCTA
Statistics
Matches: 179, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
41 26 0.15
42 11 0.06
43 32 0.18
44 8 0.04
45 99 0.55
46 3 0.02
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (45 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAACTACATATATCG
Found at i:68504060 original size:22 final size:22
Alignment explanation
Indices: 68504032--68504075 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
68504022 ACACATCATT
68504032 CATGAAAGACATCATTATATGA
1 CATGAAAGACATCATTATATGA
68504054 CATGAAAGACATCATTATATGA
1 CATGAAAGACATCATTATATGA
68504076 TTATACTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (22 bp):
CATGAAAGACATCATTATATGA
Found at i:68519099 original size:40 final size:40
Alignment explanation
Indices: 68519055--68519282 Score: 354
Period size: 40 Copynumber: 5.7 Consensus size: 40
68519045 GCTACTTGCT
* *
68519055 CAAATGCCTTCGAGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
68519095 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
68519135 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
**
68519175 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
68519215 CAAATGCCTTCGGG-CTTAGCCCGGAATTAT--TCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--TTATAGTAACTCGCA
68519254 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
68519283 CATCCGAATA
Statistics
Matches: 175, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
38 4 0.02
39 30 0.17
40 138 0.79
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68528827 original size:39 final size:39
Alignment explanation
Indices: 68528784--68528933 Score: 212
Period size: 39 Copynumber: 3.9 Consensus size: 39
68528774 TTCCAACACG
*
68528784 TAGCCTGCGGACTTCAAGTCCGGATATATTTCCAGCACA
1 TAGCCTGCGGACTTCAAGTCCGGATATATTCCCAGCACA
* *
68528823 TAGCCTACGGACTTCAAGTCCGGATATATTCCCAGCATA
1 TAGCCTGCGGACTTCAAGTCCGGATATATTCCCAGCACA
* * * *
68528862 TAGCCTGCGGACCTCATGTCCGAATATATTCCCAGCATA
1 TAGCCTGCGGACTTCAAGTCCGGATATATTCCCAGCACA
* *
68528901 TAGCCTGCGGAC-CCATGTCCGGATATATTCCCA
1 TAGCCTGCGGACTTCAAGTCCGGATATATTCCCA
68528934 ATATCATGCA
Statistics
Matches: 102, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 19 0.19
39 83 0.81
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (39 bp):
TAGCCTGCGGACTTCAAGTCCGGATATATTCCCAGCACA
Found at i:68532368 original size:19 final size:17
Alignment explanation
Indices: 68532344--68532380 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
68532334 ATAATTTTGA
68532344 GAAAAATTTTGTTCTAAAG
1 GAAAAATTTT-TTC-AAAG
68532363 GAAAAATTTTTTCAAAG
1 GAAAAATTTTTTCAAAG
68532380 G
1 G
68532381 TGTTTCTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 3 0.17
19 10 0.56
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.35
Consensus pattern (17 bp):
GAAAAATTTTTTCAAAG
Found at i:68537011 original size:33 final size:34
Alignment explanation
Indices: 68536961--68537028 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
68536951 CTAAGCCCAG
* *
68536961 ATCAATAACATTCTAGGCCTGAGCCCTATTCAGT
1 ATCAATAACAGTCTAGGCCTGAGCCCTATACAGT
*
68536995 ATCAAT-ACAGTCTAGGCCTTAGCCCTATACAGT
1 ATCAATAACAGTCTAGGCCTGAGCCCTATACAGT
68537028 A
1 A
68537029 GCAGTGTGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 25 0.81
34 6 0.19
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (34 bp):
ATCAATAACAGTCTAGGCCTGAGCCCTATACAGT
Found at i:68537253 original size:27 final size:26
Alignment explanation
Indices: 68537175--68537254 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
68537165 CAAATATCAC
* *
68537175 AGCAAAGCTACCAGTAATAATAATGC
1 AGCAAAGCTACCAGTAATAGTAATGT
* * *
68537201 AGCATAGCTGCCAG-AAGCAGTAAATGT
1 AGCAAAGCTACCAGTAA-TAGT-AATGT
*
68537228 AGCAAAGCCACCAGTAATAGTGAATGT
1 AGCAAAGCTACCAGTAATAGT-AATGT
68537255 GACATAGTCA
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
25 2 0.05
26 14 0.34
27 23 0.56
28 2 0.05
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (26 bp):
AGCAAAGCTACCAGTAATAGTAATGT
Found at i:68543397 original size:43 final size:43
Alignment explanation
Indices: 68543340--68543451 Score: 115
Period size: 42 Copynumber: 2.6 Consensus size: 43
68543330 AATGCCGACG
* *
68543340 TCCCAAAC-GTGGTCTTACATGTAATTC-AATATCGATGCCT-CTA
1 TCCCAAACAG-GGTCTTACATGTAAATCAAATA-CGATG-CTGATA
* * *
68543383 TCCCAGACAGGGTCTTACACG-AAATCAAATACGATGCTGATG
1 TCCCAAACAGGGTCTTACATGTAAATCAAATACGATGCTGATA
*
68543425 TCCCAAACATGGTCTTACATGTAAATC
1 TCCCAAACAGGGTCTTACATGTAAATC
68543452 TCAATCGAGG
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.04
42 28 0.49
43 26 0.46
44 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
TCCCAAACAGGGTCTTACATGTAAATCAAATACGATGCTGATA
Found at i:68543471 original size:43 final size:43
Alignment explanation
Indices: 68543339--68543486 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 43
68543329 TAATGCCGAC
* *
68543339 GTCCCAAACGTGGTCTTACATGT-AAT-TCAATATCGATGCCTCT
1 GTCCCAAACATGGTCTTACATGTAAATCTC-A-ATCGATGCCTGT
* * * * *
68543382 ATCCCAGACAGGGTCTTACACG-AAATC-AAATACGATG-CTGAT
1 GTCCCAAACATGGTCTTACATGTAAATCTCAAT-CGATGCCTG-T
*
68543424 GTCCCAAACATGGTCTTACATGTAAATCTCAATCGAGGCCTGT
1 GTCCCAAACATGGTCTTACATGTAAATCTCAATCGATGCCTGT
* * *
68543467 GTCCCAGACACGGTCGTACA
1 GTCCCAAACATGGTCTTACA
68543487 CGATCTCACA
Statistics
Matches: 82, Mismatches: 16, Indels: 14
0.73 0.14 0.12
Matches are distributed among these distances:
41 4 0.05
42 25 0.30
43 47 0.57
44 6 0.07
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
GTCCCAAACATGGTCTTACATGTAAATCTCAATCGATGCCTGT
Found at i:68546525 original size:46 final size:48
Alignment explanation
Indices: 68546417--68546538 Score: 140
Period size: 46 Copynumber: 2.5 Consensus size: 48
68546407 TGTCTTCGAC
** * * *
68546417 ATGGACTTACATGAATTATTCCTGTATCCAATGCCATATAGATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATA-ATATCTAAT
* *
68546467 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-AT-ATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATAATATCTAAT
*
68546513 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
68546539 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 32 0.51
48 2 0.03
50 29 0.46
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATAATATCTAAT
Found at i:68552839 original size:40 final size:40
Alignment explanation
Indices: 68552755--68552979 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
68552745 TTGAATGATG
* * * *
68552755 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
68552795 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68552835 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68552874 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68552914 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68552955 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68552980 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68553001 original size:119 final size:119
Alignment explanation
Indices: 68552755--68553012 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
68552745 TTGAATGATG
* *
68552755 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
68552820 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
68552874 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
68552937 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
68552994 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68553013 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:68558354 original size:29 final size:29
Alignment explanation
Indices: 68558315--68558393 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
68558305 CTTAATAATC
*
68558315 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
68558345 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
68558374 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68558394 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:68563198 original size:26 final size:26
Alignment explanation
Indices: 68563169--68563222 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
68563159 ATACCGAGAT
68563169 AGCTTCGGTTAATTGAGATAGCACTA
1 AGCTTCGGTTAATTGAGATAGCACTA
68563195 AGCTTCGGTTAATTGAGATAGCACTA
1 AGCTTCGGTTAATTGAGATAGCACTA
68563221 AG
1 AG
68563223 TGTGCGGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (26 bp):
AGCTTCGGTTAATTGAGATAGCACTA
Found at i:68565023 original size:20 final size:18
Alignment explanation
Indices: 68564986--68565036 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
68564976 CTATAGTAAC
68564986 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
68565003 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
68565023 TTACAACTTTACAA
1 TCACAA-TTTACAA
68565037 AAAACCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:68570029 original size:21 final size:21
Alignment explanation
Indices: 68569972--68570029 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
68569962 TCCCAGATGC
68569972 AGGGTACACACTCGTGTGGTCA
1 AGGG-ACACACTCGTGTGGTCA
* * *
68569994 AAGGACACGCCCGTGTGGTCA
1 AGGGACACACTCGTGTGGTCA
68570015 AGGGACACACTCGTG
1 AGGGACACACTCGTG
68570030 CTGTAGGTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.24, C:0.26, G:0.33, T:0.17
Consensus pattern (21 bp):
AGGGACACACTCGTGTGGTCA
Found at i:68571360 original size:41 final size:40
Alignment explanation
Indices: 68571315--68571403 Score: 142
Period size: 41 Copynumber: 2.2 Consensus size: 40
68571305 CCTGAAACAC
* *
68571315 GCCCGTGTCCTTCACATGGCCAGGACACGCCTGTGTCTCA
1 GCCCGTGTCCTTCACATGACCAGGACACGCCCGTGTCTCA
*
68571355 GGCCCGTGTCCTTCACATGACCAGGACACGCCCGTGTCTTA
1 -GCCCGTGTCCTTCACATGACCAGGACACGCCCGTGTCTCA
68571396 GCCCGTGT
1 GCCCGTGT
68571404 ACAAAAAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
40 8 0.18
41 37 0.82
ACGTcount: A:0.15, C:0.37, G:0.26, T:0.22
Consensus pattern (40 bp):
GCCCGTGTCCTTCACATGACCAGGACACGCCCGTGTCTCA
Found at i:68581069 original size:44 final size:44
Alignment explanation
Indices: 68581005--68581088 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
68580995 CATGTATCGC
* *
68581005 ATCCATAATGAACTTGGACCAACTCAACGAGCTCGGATGCTCAT
1 ATCCATAATGAACTTAGACCAACTCAACGAGCTCAGATGCTCAT
68581049 ATCCATAATGAACTTAGACCAACTCAACGAGCTCAGATGC
1 ATCCATAATGAACTTAGACCAACTCAACGAGCTCAGATGC
68581089 CTTATACATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (44 bp):
ATCCATAATGAACTTAGACCAACTCAACGAGCTCAGATGCTCAT
Found at i:68581670 original size:30 final size:29
Alignment explanation
Indices: 68581619--68581675 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
68581609 CAAAAATCAT
* *
68581619 ACTTTTCAAATTTGCATTTTTACCCCTTA
1 ACTTTTCAAATTTACACTTTTACCCCTTA
*
68581648 ACTTTATCATATTTACACTTTTACCCCT
1 ACTTT-TCAAATTTACACTTTTACCCCT
68581676 AGGCTCGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.25, C:0.26, G:0.02, T:0.47
Consensus pattern (29 bp):
ACTTTTCAAATTTACACTTTTACCCCTTA
Found at i:68583985 original size:15 final size:15
Alignment explanation
Indices: 68583967--68584030 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
68583957 GACAAGAAGA
*
68583967 CCAACATAAAGAAAT
1 CCAAGATAAAGAAAT
*
68583982 CCAAGACAGAA-AAAT
1 CCAAGATA-AAGAAAT
*
68583997 CCAAGATGAAGAAAT
1 CCAAGATAAAGAAAT
* *
68584012 CCAATATATAGAAAT
1 CCAAGATAAAGAAAT
68584027 CCAA
1 CCAA
68584031 TATACGATAC
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
14 2 0.05
15 36 0.90
16 2 0.05
ACGTcount: A:0.56, C:0.19, G:0.11, T:0.14
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:68589558 original size:45 final size:45
Alignment explanation
Indices: 68589494--68589582 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
68589484 ATCCATACGA
68589494 ACTGGGATAAAATGAGCCGACTTCGTTAACTTATCAATCACAACG
1 ACTGGGATAAAATGAGCCGACTTCGTTAACTTATCAATCACAACG
68589539 ACTGGGATAAAATGAGCCGACTTCGTTAACTTATCAATCACAAC
1 ACTGGGATAAAATGAGCCGACTTCGTTAACTTATCAATCACAAC
68589583 CCATACTGCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (45 bp):
ACTGGGATAAAATGAGCCGACTTCGTTAACTTATCAATCACAACG
Found at i:68599446 original size:46 final size:46
Alignment explanation
Indices: 68599389--68599486 Score: 169
Period size: 46 Copynumber: 2.1 Consensus size: 46
68599379 TAAATCATGA
* **
68599389 TTTCATCAAAATTCTCTTTGTAAAAGTTGTTTATCTATCATGAACC
1 TTTCATAAAAATTCTCTTTGTAAAAGTTGTTTATCTATCAACAACC
68599435 TTTCATAAAAATTCTCTTTGTAAAAGTTGTTTATCTATCAACAACC
1 TTTCATAAAAATTCTCTTTGTAAAAGTTGTTTATCTATCAACAACC
68599481 TTTCAT
1 TTTCAT
68599487 TTTCTACCAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.44
Consensus pattern (46 bp):
TTTCATAAAAATTCTCTTTGTAAAAGTTGTTTATCTATCAACAACC
Found at i:68599643 original size:19 final size:19
Alignment explanation
Indices: 68599619--68599655 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
68599609 ATCATACATT
68599619 TCCTAGTTATGAAA-TTTCA
1 TCCTAGTT-TGAAACTTTCA
68599638 TCCTAGTTTGAAACTTTC
1 TCCTAGTTTGAAACTTTC
68599656 CACAATACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (19 bp):
TCCTAGTTTGAAACTTTCA
Found at i:68601037 original size:48 final size:47
Alignment explanation
Indices: 68600985--68601220 Score: 256
Period size: 48 Copynumber: 4.9 Consensus size: 47
68600975 ATGCCGAGGC
* ** *
68600985 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGT
* * *
68601033 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTTATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAT-GT
* * * *
68601081 CGATGCCATGTCCCAGACATGGTCTTACACTCGCACACATATTAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TCATGT
* * * * *
68601129 CGATGTCATGTCCCAAACATAGTCTTACACTGGCTCTCATATCGTGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGT
** * *
68601176 CTGACACCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA
68601221 CCCAAATGCC
Statistics
Matches: 156, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
47 6 0.04
48 147 0.94
49 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGT
Found at i:68601105 original size:96 final size:96
Alignment explanation
Indices: 68600941--68601220 Score: 339
Period size: 96 Copynumber: 2.9 Consensus size: 96
68600931 AATTGCCGAC
* * **
68600941 GCCATGTTCCAAACATAGTCTTACATTGGCT-TACATGCCGA-GGCCGATGCCATGTCCCAGACA
1 GCCATGTCCCAAACATAGTCTTACACTGGCTCT-CATATC-ATGGCCGATGCCATGTCCCAGACA
* *** *
68601004 TGGTCTTACACTAGCTCTTGTCTCAATGTCGAT
64 TGGTCTTACACTAGCACACATATCAATGTCGAT
* * * *
68601037 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGTTATGGCCGATGCCATGTCCCAGACATG
1 GCCATGTCCCAAACATAGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACATG
* *
68601102 GTCTTACACTCGCACACATATTAATGTCGAT
66 GTCTTACACTAGCACACATATCAATGTCGAT
* * * **
68601133 GTCATGTCCCAAACATAGTCTTACACTGGCTCTCATATCGTGGCTGACACCATGTCCCAGACATG
1 GCCATGTCCCAAACATAGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACATG
*
68601198 GTCTTACACTGGCACACATATCA
66 GTCTTACACTAGCACACATATCA
68601221 CCCAAATGCC
Statistics
Matches: 158, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
95 1 0.01
96 156 0.99
97 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (96 bp):
GCCATGTCCCAAACATAGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACATG
GTCTTACACTAGCACACATATCAATGTCGAT
Found at i:68606265 original size:44 final size:43
Alignment explanation
Indices: 68606207--68606296 Score: 162
Period size: 44 Copynumber: 2.1 Consensus size: 43
68606197 TTCATGATAT
*
68606207 ATGTGGCATCTGAGCTCGTTGAGTTGGTCTGAGTTCATTATGG
1 ATGTGGCATCTGAGCTCGTTGAGTTGGTCCGAGTTCATTATGG
68606250 ATGTGAGCATCTGAGCTCGTTGAGTTGGTCCGAGTTCATTATGG
1 ATGTG-GCATCTGAGCTCGTTGAGTTGGTCCGAGTTCATTATGG
68606294 ATG
1 ATG
68606297 CAATACATGT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 5 0.11
44 40 0.89
ACGTcount: A:0.18, C:0.14, G:0.32, T:0.36
Consensus pattern (43 bp):
ATGTGGCATCTGAGCTCGTTGAGTTGGTCCGAGTTCATTATGG
Found at i:68608272 original size:39 final size:40
Alignment explanation
Indices: 68608068--68608290 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
68608058 TTAAATGCTG
* * * * * *
68608068 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
68608108 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
68608148 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
68608188 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
68608228 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
68608267 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68608291 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 116 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:68608310 original size:79 final size:80
Alignment explanation
Indices: 68608143--68608325 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
68608133 GTGCGAGATA
* * *
68608143 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGG
** **
68608208 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
68608223 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGG
*
68608287 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
68608302 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
68608326 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCAAAGG
CATTCGAACGAGGAG
Found at i:68615995 original size:40 final size:39
Alignment explanation
Indices: 68615959--68616132 Score: 190
Period size: 39 Copynumber: 4.4 Consensus size: 39
68615949 ATATCCGGAC
* *
68615959 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* *
68615999 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* **
68616039 TAAGTCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* * * *
68616078 TATGTCCCGAAGGCATT-GTGTGAGTTACTAAA-CCGGGC
1 TAAGT-CCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
*
68616116 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
68616133 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
38 22 0.18
39 50 0.41
40 50 0.41
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
Found at i:68616059 original size:39 final size:40
Alignment explanation
Indices: 68615912--68616132 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
68615902 ATTAATGCTG
* * * * * *
68615912 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
68615952 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
68615992 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
68616032 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
68616071 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
68616110 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68616133 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 22 0.14
39 50 0.31
40 79 0.50
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:68616076 original size:79 final size:78
Alignment explanation
Indices: 68615912--68616132 Score: 246
Period size: 79 Copynumber: 2.8 Consensus size: 78
68615902 ATTAATGCTG
* * * * * * * *
68615912 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCGAAGGCATTC
68615977 GTGCGAGATACTAAA
64 GTGCGAGATACTAAA
* *
68615992 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCGAAGGCATTCG
* **
68616057 TGCGAGTTGTTAAA
65 TGCGAGATACTAAA
* * * *
68616071 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGT-CCGAAGGCATT
68616133 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
77 9 0.07
78 24 0.20
79 46 0.38
80 38 0.31
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCGAAGGCATTCGT
GCGAGATACTAAA
Found at i:68638574 original size:52 final size:52
Alignment explanation
Indices: 68638496--68638604 Score: 175
Period size: 52 Copynumber: 2.1 Consensus size: 52
68638486 TGTATTAACT
*
68638496 AATAGTTTCATCATATATGACTTGCCCTCTTAAATTTACTTCTAGA-TGAATG
1 AATAGTTTCATCATATATGACTTGCCCTCTTAAATTTACCTCTA-ATTGAATG
* *
68638548 AATAGTTTCATCATATATGATTTGCCCTCTTGAATTTACCTCTAATTGAATG
1 AATAGTTTCATCATATATGACTTGCCCTCTTAAATTTACCTCTAATTGAATG
68638600 AATAG
1 AATAG
68638605 GGATTAACGG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
51 1 0.02
52 52 0.98
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (52 bp):
AATAGTTTCATCATATATGACTTGCCCTCTTAAATTTACCTCTAATTGAATG
Found at i:68639800 original size:15 final size:14
Alignment explanation
Indices: 68639767--68639800 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
68639757 GATAAAAGGA
68639767 AAAAAGGATTAAAT
1 AAAAAGGATTAAAT
*
68639781 CAAAAGAGATTAAAT
1 AAAAAG-GATTAAAT
68639796 AAAAA
1 AAAAA
68639801 ACTTGATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.68, C:0.03, G:0.12, T:0.18
Consensus pattern (14 bp):
AAAAAGGATTAAAT
Found at i:68639891 original size:22 final size:23
Alignment explanation
Indices: 68639866--68639915 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
68639856 AGTTGATGAG
* *
68639866 AAAAAAAATAAAT-ATAATTATA
1 AAAAAAAATAAATAAAAATGATA
*
68639888 AAAATAAATAAATAAAAATGATA
1 AAAAAAAATAAATAAAAATGATA
68639911 AAAAA
1 AAAAA
68639916 TTTAAAAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (23 bp):
AAAAAAAATAAATAAAAATGATA
Found at i:68639905 original size:33 final size:32
Alignment explanation
Indices: 68639867--68639930 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 32
68639857 GTTGATGAGA
*
68639867 AAAAAAATAAATATAATTATAAAAA-TAAATAAAT
1 AAAAAGATAAA-A-AATT-TAAAAAGTAAATAAAT
68639901 AAAAATGATAAAAAATTTAAAAAGTAAATA
1 AAAAA-GATAAAAAATTTAAAAAGTAAATA
68639931 TAAAAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 6 0.22
33 10 0.37
34 6 0.22
35 5 0.19
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (32 bp):
AAAAAGATAAAAAATTTAAAAAGTAAATAAAT
Found at i:68639971 original size:21 final size:19
Alignment explanation
Indices: 68639933--68639973 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
68639923 AGTAAATATA
*
68639933 AAAATATTTTTAAGTTTTT
1 AAAATATTTTTAAATTTTT
68639952 AAAATATATTTTAGAATTTTT
1 AAAATAT-TTTTA-AATTTTT
68639973 A
1 A
68639974 GAATTATAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 5 0.26
21 7 0.37
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
AAAATATTTTTAAATTTTT
Found at i:68640678 original size:14 final size:15
Alignment explanation
Indices: 68640654--68640682 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
68640644 TATGTATCTT
68640654 TTTTTTAAATATTTA
1 TTTTTTAAATATTTA
68640669 TTTTTT-AATATTTA
1 TTTTTTAAATATTTA
68640683 ATTATACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAAATATTTA
Found at i:68641766 original size:30 final size:31
Alignment explanation
Indices: 68641704--68641766 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
68641694 TTATTTTTTA
68641704 TTAATTTTGTTATTATTTTAAAGATAATTTG
1 TTAATTTTGTTATTATTTTAAAGATAATTTG
*
68641735 TTAATTTTGTTATTATTTTAAAGA-CATTTG
1 TTAATTTTGTTATTATTTTAAAGATAATTTG
68641765 TT
1 TT
68641767 TGTTAAGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 7 0.23
31 24 0.77
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.59
Consensus pattern (31 bp):
TTAATTTTGTTATTATTTTAAAGATAATTTG
Found at i:68641769 original size:34 final size:31
Alignment explanation
Indices: 68641696--68641772 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 31
68641686 TATAAAATTT
*
68641696 ATTTTTTATTAATTTTGTTATTATTTTAAAG
1 ATTTTTTGTTAATTTTGTTATTATTTTAAAG
**
68641727 ATAATTTGTTAATTTTGTTATTATTTTAAAG
1 ATTTTTTGTTAATTTTGTTATTATTTTAAAG
68641758 ACATTTGTTTGTTAA
1 --ATTT-TTTGTTAA
68641773 GTTGCATCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
31 28 0.74
33 2 0.05
34 8 0.21
ACGTcount: A:0.30, C:0.01, G:0.09, T:0.60
Consensus pattern (31 bp):
ATTTTTTGTTAATTTTGTTATTATTTTAAAG
Found at i:68641909 original size:12 final size:12
Alignment explanation
Indices: 68641888--68641921 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
68641878 TATATATTTT
*
68641888 AAAATTATATAA
1 AAAATAATATAA
68641900 AAAATAATATAA
1 AAAATAATATAA
*
68641912 AAATTAATAT
1 AAAATAATAT
68641922 GGACAGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:68654777 original size:22 final size:21
Alignment explanation
Indices: 68654738--68654798 Score: 52
Period size: 22 Copynumber: 2.8 Consensus size: 21
68654728 TTATTAATTG
* *
68654738 CTACTAACCACTTGACTACTAA
1 CTACTAA-CAATTAACTACTAA
* *
68654760 CTACTAACAAATTAACTATTAT
1 CTACTAAC-AATTAACTACTAA
68654782 C-ACTAACAATCTAACTA
1 CTACTAACAAT-TAACTA
68654799 ACTGCTAGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 13 0.39
22 17 0.52
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.30
Consensus pattern (21 bp):
CTACTAACAATTAACTACTAA
Found at i:68654953 original size:12 final size:12
Alignment explanation
Indices: 68654936--68654960 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68654926 TGATTATTCC
68654936 AATAACACGTTA
1 AATAACACGTTA
68654948 AATAACACGTTA
1 AATAACACGTTA
68654960 A
1 A
68654961 CTTTTAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (12 bp):
AATAACACGTTA
Found at i:68657152 original size:50 final size:50
Alignment explanation
Indices: 68657077--68657179 Score: 197
Period size: 50 Copynumber: 2.1 Consensus size: 50
68657067 GTGAAGTCAA
*
68657077 TATCCAGACATTAGCAATTGACTTAACCGAAGTTTGTATAACCCTTTTAT
1 TATCCAGACATCAGCAATTGACTTAACCGAAGTTTGTATAACCCTTTTAT
68657127 TATCCAGACATCAGCAATTGACTTAACCGAAGTTTGTATAACCCTTTTAT
1 TATCCAGACATCAGCAATTGACTTAACCGAAGTTTGTATAACCCTTTTAT
68657177 TAT
1 TAT
68657180 GTCAATGGCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (50 bp):
TATCCAGACATCAGCAATTGACTTAACCGAAGTTTGTATAACCCTTTTAT
Found at i:68660001 original size:17 final size:16
Alignment explanation
Indices: 68659979--68660013 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
68659969 ATTATTATTT
68659979 TAAAAAAATTATTCAAAA
1 TAAAAAAA-TATT-AAAA
68659997 TAAAAAAATATTAAAA
1 TAAAAAAATATTAAAA
68660013 T
1 T
68660014 TTTTGTCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 4 0.24
18 8 0.47
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAAAAAATATTAAAA
Found at i:68666585 original size:14 final size:14
Alignment explanation
Indices: 68666566--68666593 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68666556 CAACTAATTT
68666566 TAGGATAGTGTTAA
1 TAGGATAGTGTTAA
68666580 TAGGATAGTGTTAA
1 TAGGATAGTGTTAA
68666594 GTAGAGATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.29, T:0.36
Consensus pattern (14 bp):
TAGGATAGTGTTAA
Found at i:68672084 original size:46 final size:46
Alignment explanation
Indices: 68672034--68672206 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
68672024 TGGTTGAGCA
*
68672034 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
68672080 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACCAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
68672127 TCCGAACTCATTGAGTTGAGCCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
68672173 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68672207 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68672190 original size:93 final size:93
Alignment explanation
Indices: 68672031--68672201 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
68672021 GGATGGTTGA
* * * *
68672031 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68672096 TGAGTCCGAGTTCGTGAGATGTAACCAG
66 TGAGTCCGAGTTCGTGAGATGTAACCAG
* * *
68672124 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68672189 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68672202 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACCAG
Found at i:68673962 original size:27 final size:27
Alignment explanation
Indices: 68673490--68673954 Score: 447
Period size: 27 Copynumber: 17.3 Consensus size: 27
68673480 GCGTTACAAA
* * *
68673490 GGTATTTCAGTAATTTTAC-ACTACAAG
1 GGTATTTCGGTAATTTTACAAAT-CGAG
* * * *
68673517 GGTATTTTGATAATTTTATAAATCGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
68673544 GGTATTTCGATAATTTTACTAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
68673571 GGTATTTTGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
68673598 GGTGTTTCGGTAATTTTACAAATCAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
68673625 GGTATTTCGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
68673652 GGTGTTTCGGTAAGTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * **
68673679 GGTGTTTTGGTAATTTCACAAATTAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
68673706 AGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * *
68673733 GGTACTTT-AGTAATTTCAC-AATTGAA
1 GGTA-TTTCGGTAATTTTACAAATCGAG
* *
68673759 GGTATTTCAGTAATTTTACAAAT-TAGG
1 GGTATTTCGGTAATTTTACAAATCGA-G
* * *
68673786 GGTATTTTGGTAATTTTACCAATCAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * *
68673813 CGTGTTTCGGTAATTTTAAAAATCGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
68673840 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
68673867 GGTATTTCAGTAATTTTAC-AATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
** *
68673893 GGTATTTCGACAATTTTACAAATTG-G
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
68673919 GGATATTTTGATAATTTTACAAATTGAG
1 GG-TATTTCGGTAATTTTACAAATCGAG
*
68673947 AGTATTTC
1 GGTATTTC
68673955 AATAATTTCT
Statistics
Matches: 366, Mismatches: 63, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
25 3 0.01
26 46 0.13
27 309 0.84
28 8 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Found at i:68674311 original size:28 final size:28
Alignment explanation
Indices: 68674279--68674342 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
68674269 TGGCCCCTTT
* * *
68674279 AGGCCCAATCTCGTTCACATGGTCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
68674307 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
68674335 AGGCCCAA
1 AGGCCCAA
68674343 CTACTTCCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.27, C:0.36, G:0.17, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:68678847 original size:25 final size:23
Alignment explanation
Indices: 68678802--68678847 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
68678792 CATAAAAATA
* *
68678802 ATTATCTGTTAAATTCTGTGTTT
1 ATTATATGTTAAATGCTGTGTTT
68678825 ATTATATGTGTAAATGCATGTGT
1 ATTATATGT-TAAATGC-TGTGT
68678848 AAAAGTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 6 0.32
25 5 0.26
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (23 bp):
ATTATATGTTAAATGCTGTGTTT
Found at i:68681021 original size:40 final size:38
Alignment explanation
Indices: 68680977--68681083 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 38
68680967 CGATATATTA
* * *
68680977 TATATCCGGGTTAAATCCCGTAGGCTTCGTACTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTACTGGT-A-C
* *
68681017 TATATCCGGGTTAGATCCCGCAGGCTTAGTGCTGGTAC
1 TATATCCGGGTTAAATCCCGCAGGCTTAGTACTGGTAC
*
68681055 TATATCCGGGCTTAAAGTTCCGCAGGCTT
1 TATATCCGGG-TTAAA-TCCCGCAGGCTT
68681084 TGAGCTAGTA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
38 10 0.17
39 5 0.09
40 43 0.74
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTAGTACTGGTAC
Found at i:68688984 original size:40 final size:40
Alignment explanation
Indices: 68688940--68689086 Score: 226
Period size: 40 Copynumber: 3.7 Consensus size: 40
68688930 TGATATATTA
*
68688940 TATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
68688980 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
*
68689020 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-AT-
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
68689058 TGTATCCGGGCTTAAAGTTCCGCAGGCTT
1 TATATCCGGG-TTAAA-TCCCGCAGGCTT
68689087 TGAGCTAGTA
Statistics
Matches: 101, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
38 9 0.09
39 7 0.07
40 85 0.84
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:68696684 original size:40 final size:40
Alignment explanation
Indices: 68696620--68696727 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 40
68696610 ATTCAATGCC
* * *
68696620 TCGCACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCAAA
* * * * *
68696660 TCGTACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCAAA
* *
68696700 TTGCACACTAAGTGCCACAAATAGCCGA
1 TCGCACACTAAGTGCCATAAATAGCCGA
68696728 TTCTTTGTCG
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCAAA
Found at i:68706996 original size:61 final size:60
Alignment explanation
Indices: 68706841--68707018 Score: 189
Period size: 61 Copynumber: 2.9 Consensus size: 60
68706831 TTTCTCGTTT
* * * *
68706841 AGAGTTGTGCCATAAAGGCATTCCTTATTATCCAGTACTT-GCCACAAAGGCTTTCATGTCC
1 AGAGTTGTG-CATAAAGGCATTCCTTAATATCTAGTA-TTCACCACAAAGGCTTTCCTGTCC
* * ** * *
68706902 AAAGTTGTGCTACAAAGGCATTTATTAATATCTAGTATTCACCAAAAAGACTTTCCTGTCC
1 AGAGTTGTGC-ATAAAGGCATTCCTTAATATCTAGTATTCACCACAAAGGCTTTCCTGTCC
* *
68706963 AGAGTTGTGTCATAAAGGCATTCCTTAACATCTAAG-ACTCACCACAAAGGCTTTCC
1 AGAGTTGTG-CATAAAGGCATTCCTTAATATCT-AGTATTCACCACAAAGGCTTTCC
68707019 CTTTCCTAGT
Statistics
Matches: 95, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
60 3 0.03
61 89 0.94
62 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (60 bp):
AGAGTTGTGCATAAAGGCATTCCTTAATATCTAGTATTCACCACAAAGGCTTTCCTGTCC
Found at i:68708965 original size:20 final size:20
Alignment explanation
Indices: 68708940--68708980 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
68708930 TTTTAAACTG
* *
68708940 TTTAAACTCGATTAAAAAAT
1 TTTAAAATCAATTAAAAAAT
*
68708960 TTTAAAATCAATTGAAAAAT
1 TTTAAAATCAATTAAAAAAT
68708980 T
1 T
68708981 GCTACCTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (20 bp):
TTTAAAATCAATTAAAAAAT
Found at i:68714042 original size:24 final size:24
Alignment explanation
Indices: 68714014--68714094 Score: 69
Period size: 24 Copynumber: 3.2 Consensus size: 24
68714004 CTGTGTCAAT
68714014 TAATTACAATTTCAATATGTTGAA
1 TAATTACAATTTCAATATGTTGAA
* *
68714038 TAATT--AA-TTCATTTATTCCTTGTCAA
1 TAATTACAATTTCA-ATA-T-GTTG--AA
68714064 TTAATTACAATTTCAATATGTTGAA
1 -TAATTACAATTTCAATATGTTGAA
68714089 TAATTA
1 TAATTA
68714095 ATTCATTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 18
0.67 0.06 0.27
Matches are distributed among these distances:
21 4 0.09
22 4 0.09
23 1 0.02
24 14 0.32
25 2 0.05
26 2 0.05
27 8 0.18
28 1 0.02
29 4 0.09
30 4 0.09
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (24 bp):
TAATTACAATTTCAATATGTTGAA
Found at i:68714083 original size:51 final size:51
Alignment explanation
Indices: 68714007--68714109 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
68713997 TAACACACTG
68714007 TGTCAATTAATTACAATTTCAATATGTTGAATAATTAATTCATTTATTCCT
1 TGTCAATTAATTACAATTTCAATATGTTGAATAATTAATTCATTTATTCCT
68714058 TGTCAATTAATTACAATTTCAATATGTTGAATAATTAATTCATTTATTCCT
1 TGTCAATTAATTACAATTTCAATATGTTGAATAATTAATTCATTTATTCCT
68714109 T
1 T
68714110 ACATTTTATA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.48
Consensus pattern (51 bp):
TGTCAATTAATTACAATTTCAATATGTTGAATAATTAATTCATTTATTCCT
Found at i:68722928 original size:39 final size:39
Alignment explanation
Indices: 68722884--68723042 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 39
68722874 ATGCAAGACA
*
68722884 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
68722923 CTGGAAATATATCCGGGCCAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68722962 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * *
68723001 CTGGAAATGTATCCGGGTTAAAGTCTCGTAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68723040 CTG
1 CTG
68723043 ATAATATAAT
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:68725769 original size:43 final size:43
Alignment explanation
Indices: 68725708--68725796 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
68725698 GTTCTTCAAA
68725708 GCCCATGTCTGAATTTCTATTTCTGTTAAAGATTTCATGAAAT
1 GCCCATGTCTGAATTTCTATTTCTGTTAAAGATTTCATGAAAT
68725751 GCCCATGTCTGAATTTCTATTTCTGTTAAAGATTTCATGAAAT
1 GCCCATGTCTGAATTTCTATTTCTGTTAAAGATTTCATGAAAT
68725794 GCC
1 GCC
68725797 ATTGTTGATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (43 bp):
GCCCATGTCTGAATTTCTATTTCTGTTAAAGATTTCATGAAAT
Found at i:68726503 original size:43 final size:41
Alignment explanation
Indices: 68726423--68726531 Score: 105
Period size: 43 Copynumber: 2.6 Consensus size: 41
68726413 AGACATCGTG
*
68726423 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTAAGTA
1 TAAGACCATGTCTGGGACACAGGCCTCGATT-AGATTTAA-TA
* * *
68726466 TAAGACCATGTCTGGGACATC-GGCTTCGTATCT-GATTTCATG
1 TAAGACCATGTCTGGGACA-CAGGCCTCG-AT-TAGATTTAATA
* *
68726508 TAAGACCTTGTCTGGGACAGAGGC
1 TAAGACCATGTCTGGGACACAGGC
68726532 ATTGATATTG
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
42 22 0.39
43 30 0.54
44 3 0.05
45 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
TAAGACCATGTCTGGGACACAGGCCTCGATTAGATTTAATA
Found at i:68727989 original size:27 final size:27
Alignment explanation
Indices: 68727959--68728012 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
68727949 ATTATAAAAA
68727959 TAAAT-AAAATTCAA-TATTTTAATAATT
1 TAAATGAAAATT-AATTATTTT-ATAATT
*
68727986 TAAATGTAAATTAATTATTTTATAATT
1 TAAATGAAAATTAATTATTTTATAATT
68728013 GAAGTATGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (27 bp):
TAAATGAAAATTAATTATTTTATAATT
Found at i:68734455 original size:48 final size:48
Alignment explanation
Indices: 68734311--68734539 Score: 166
Period size: 48 Copynumber: 4.9 Consensus size: 48
68734301 GGGTTATGTG
* * ** *
68734311 CGATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCATCGGTATG
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATA
** ** * * *
68734359 TAATTTCATGTAAGACCATAG-C---G--A-GGCTATCGGCATCGATATG
1 CGATCCCATGTAAGACCAT-GTCTGGGACATGGC-ATTGGCATCGACATA
* * *
68734402 TGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGACCTA
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATA
** * * * *
68734450 CGATCCCATGTAAGACTGTGTCTGGGACATGACATTGGCATTGATATG
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATA
* * * *
68734498 TGATCCCATGTAAGATCATATCTGGGATATGGCATTGGCATC
1 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
68734540 CTACCATGTG
Statistics
Matches: 140, Mismatches: 32, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
42 4 0.03
43 29 0.21
45 1 0.01
46 1 0.01
48 101 0.72
49 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (48 bp):
CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATA
Found at i:68746690 original size:18 final size:18
Alignment explanation
Indices: 68746667--68746702 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
68746657 TTCTTAATAG
68746667 TTAGTCTATGTTATGTAA
1 TTAGTCTATGTTATGTAA
68746685 TTAGTCTATGTTATGTAA
1 TTAGTCTATGTTATGTAA
68746703 CTTGTTTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
TTAGTCTATGTTATGTAA
Found at i:68747811 original size:21 final size:21
Alignment explanation
Indices: 68747752--68747800 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
68747742 TTATTCCAAG
68747752 GAAGCCGATTGATCCATCTCA
1 GAAGCCGATTGATCCATCTCA
*
68747773 GAAGCCGATTGATCCATCTTA
1 GAAGCCGATTGATCCATCTCA
68747794 GAAGCCG
1 GAAGCCG
68747801 GATTCATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (21 bp):
GAAGCCGATTGATCCATCTCA
Found at i:68764763 original size:50 final size:50
Alignment explanation
Indices: 68764684--68765017 Score: 335
Period size: 50 Copynumber: 6.8 Consensus size: 50
68764674 TGATGCTAGG
* * *
68764684 GAGATATAAGAGCTAGTGTAAGAACATGTCTAGGACATGGCATCGACCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
*
68764734 GAGATATGAGAGCTAGTGTAAGACTATGTCTGGGACATGGCATC-AGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCTC
* * * * *
68764784 GAGATACGAGAGCTAGTGTAAGATCATGTTTGGGACATGACATCG-GCT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * * * *
68764832 -TGATATGTG-TC-AGTGTAAGACCATGTCTCGGACATGGCATCGACATT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * *
68764879 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* ** *
68764929 GATATACAAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * * *
68764977 -ATGATGTGTGAGCCAGTGTAAAACCATGTTTGGGACATGGC
1 GA-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
68765018 GTCGGCACCT
Statistics
Matches: 231, Mismatches: 45, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
45 27 0.12
46 2 0.01
47 7 0.03
48 36 0.16
49 5 0.02
50 154 0.67
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
Found at i:68764963 original size:145 final size:145
Alignment explanation
Indices: 68764698--68764973 Score: 417
Period size: 145 Copynumber: 1.9 Consensus size: 145
68764688 TATAAGAGCT
* * *
68764698 AGTGTAAGAACATGTCTAGGACATGGCATCGACCTCGAGATATGAGAGCTAGTGTAAGACTATGT
1 AGTGTAAGAACATGTCTAGGACATGGCATCGACATCGAGAGATGAGAGCTAGTGTAAGACCATGT
* * *
68764763 CTGGGACATGGCATCAGCCTCGAGATACGAGAGCTAGTGTAAGATCATGTTTGGGACATGACATC
66 CTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGACCATGTCTGGGACATGACATC
68764828 GGCTTGATATGTGTC
131 GGCTTGATATGTGTC
* * * *
68764843 AGTGTAAGACCATGTCTCGGACATGGCATCGACATTGATAGATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGAACATGTCTAGGACATGGCATCGACATCGAGAGATGAGAGCTAGTGTAAGACCATGT
** * * *
68764908 CTGGGACATGGCATTGGCCTCGATATACAAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATC
66 CTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGACCATGTCTGGGACATGACATC
68764973 G
131 G
68764974 ACCATGATGT
Statistics
Matches: 116, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
145 116 1.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (145 bp):
AGTGTAAGAACATGTCTAGGACATGGCATCGACATCGAGAGATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGACCATGTCTGGGACATGACATC
GGCTTGATATGTGTC
Found at i:68767108 original size:20 final size:21
Alignment explanation
Indices: 68767073--68767122 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
68767063 TCTTATAATA
68767073 TTTATATGTTTGAATTA-AATGT
1 TTTATATG-TTGAATTAGAAT-T
68767095 TTTATATG-TGAATTATGAATT
1 TTTATATGTTGAATTA-GAATT
68767116 TTTATAT
1 TTTATAT
68767123 AAATGAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 7 0.27
21 8 0.31
22 11 0.42
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (21 bp):
TTTATATGTTGAATTAGAATT
Found at i:68770048 original size:55 final size:53
Alignment explanation
Indices: 68769961--68770212 Score: 248
Period size: 55 Copynumber: 4.8 Consensus size: 53
68769951 ATTAGGGTTT
*
68769961 AAGGATACCATGTAAGACCATGCCAATG-CATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGG-CATTGGTAA-GTTTCTAAGGC
* * * * *
68770016 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
68770071 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * *
68770124 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATAGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * *
68770173 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGT
68770213 TAGGTACCCA
Statistics
Matches: 166, Mismatches: 24, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
49 36 0.22
52 7 0.04
53 41 0.25
54 12 0.07
55 66 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:68770167 original size:108 final size:110
Alignment explanation
Indices: 68769968--68770168 Score: 302
Period size: 108 Copynumber: 1.8 Consensus size: 110
68769958 TTTAAGGATA
* *
68769968 CCATGTAAGACCATGCCAATGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
68770033 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCATAGATAAGTTACTATAAGGCAAAGGTC
* * *
68770078 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
68770140 ACCATGTCAAGACATGGCAATAG-TAAGTT
65 ACCATGTCAAGACATGGC-ATAGATAAGTT
68770169 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
107 3 0.04
108 45 0.54
109 10 0.12
110 25 0.30
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCATAGATAAGTTACTATAAGGCAAAGGTC
Found at i:68772000 original size:27 final size:27
Alignment explanation
Indices: 68771969--68772291 Score: 201
Period size: 27 Copynumber: 12.0 Consensus size: 27
68771959 TTGGTAAATC
*
68771969 TACAAACCAAAGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
68771996 TACAAACCAATGGTATTTCTGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** * *
68772023 TTGAAAGTCAAGGGCATTTCTA-TAATTT
1 TACAAA-CCAAGGGTATTTC-AGTAATTT
** ** *
68772051 TTTAAATTAGGGGTATTTCTA-TAATTT
1 TACAAACCAAGGGTATTTC-AGTAATTT
* *
68772078 TTCAAATCAAGGGTATTTC-GATAATTT
1 TACAAACCAAGGGTATTTCAG-TAATTT
* * * **
68772105 TCCAAATCAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* * *
68772132 TACAAATCGAGGGTATTTCGGTAAATTT
1 TACAAACCAAGGGTATTTCAGT-AATTT
* *
68772160 TACAAACCAGGGGTAATTT-GGTAATTT
1 TACAAACCAAGGGT-ATTTCAGTAATTT
* * * **
68772187 TGCTAA-TAGAGGGTATTTTGGTAATTT
1 TACAAACCA-AGGGTATTTCAGTAATTT
** *
68772214 TGTAAACCAAGGGTATCT-AGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** *
68772240 TGTAAACCAAGAGTA-TTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
**
68772266 TGTAAACCAAGGGTATTTCAGTAATT
1 TACAAACCAAGGGTATTTCAGTAATT
68772292 CTATCCTATA
Statistics
Matches: 247, Mismatches: 37, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.00
26 48 0.19
27 152 0.62
28 42 0.17
29 4 0.02
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCAGTAATTT
Found at i:68772117 original size:54 final size:54
Alignment explanation
Indices: 68771971--68772291 Score: 219
Period size: 55 Copynumber: 5.9 Consensus size: 54
68771961 GGTAAATCTA
* * **
68771971 CAAACCAAAGGTATTTC-AGTAATTTTACAAACCAATGGTATTTCTGTAATTTTT
1 CAAATCAAGGGTATTTCGA-TAATTTTACAAACCAGGGGTATTTCTGTAATTTTT
* * * ** ** *
68772025 GAAAGTCAAGGGCATTTCTATAATTTTTTAAATTAGGGGTATTTCTATAATTTTT
1 CAAA-TCAAGGGTATTTCGATAATTTTACAAACCAGGGGTATTTCTGTAATTTTT
* * *
68772080 CAAATCAAGGGTATTTCGATAATTTTCCAAATCAGGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCGATAATTTTACAAACCAGGGGTATTTCT-GTAATTTTT
* * * *
68772134 CAAATCGAGGGTATTTCGGTAAATTTTACAAACCAGGGGTAATTT-GGTAATTTTG
1 CAAATCAAGGGTATTTCGAT-AATTTTACAAACCAGGGGT-ATTTCTGTAATTTTT
* * * ** *
68772189 CTAAT-AGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA--TCTAGTAATTTTGT
1 CAAATCA-AGGGTATTTCGATAATTTTACAAACCAGGGGTATTTCT-GTAATTTT-T
* * ** * *
68772243 -AAACCAAGAGTA-TTC-AGTAATTTTGTAAACCAAGGGTATTTCAGTAATT
1 CAAATCAAGGGTATTTCGA-TAATTTTACAAACCAGGGGTATTTCTGTAATT
68772292 CTATCCTATA
Statistics
Matches: 215, Mismatches: 39, Indels: 27
0.77 0.14 0.10
Matches are distributed among these distances:
51 1 0.00
52 23 0.11
53 23 0.11
54 81 0.38
55 82 0.38
56 5 0.02
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (54 bp):
CAAATCAAGGGTATTTCGATAATTTTACAAACCAGGGGTATTTCTGTAATTTTT
Found at i:68772242 original size:26 final size:26
Alignment explanation
Indices: 68772207--68772291 Score: 136
Period size: 26 Copynumber: 3.2 Consensus size: 26
68772197 GGGTATTTTG
68772207 GTAATTTTGTAAACCAAGGGTA-TCTA
1 GTAATTTTGTAAACCAAGGGTATTC-A
*
68772233 GTAATTTTGTAAACCAAGAGTATTCA
1 GTAATTTTGTAAACCAAGGGTATTCA
68772259 GTAATTTTGTAAACCAAGGGTATTTCA
1 GTAATTTTGTAAACCAAGGGTA-TTCA
68772286 GTAATT
1 GTAATT
68772292 CTATCCTATA
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
26 43 0.78
27 12 0.22
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (26 bp):
GTAATTTTGTAAACCAAGGGTATTCA
Found at i:68772310 original size:27 final size:27
Alignment explanation
Indices: 68772280--68772356 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
68772270 AACCAAGGGT
*
68772280 ATTTCAGTAATTCTATCCTATAGGGGC
1 ATTTCAGTAATTCTACCCTATAGGGGC
* * *
68772307 ATTTCACTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTATAGGGGC
* * *
68772334 ATTTTAGTAATACTAGCCTATAG
1 ATTTCAGTAATTCTACCCTATAG
68772357 ATATGAGATT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTATAGGGGC
Found at i:68785373 original size:17 final size:16
Alignment explanation
Indices: 68785351--68785384 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
68785341 ATTAGTGAAC
*
68785351 ATTGTCATTGCATTGTT
1 ATTGTCATCGCA-TGTT
68785368 ATTGTCATCGCATGTT
1 ATTGTCATCGCATGTT
68785384 A
1 A
68785385 ATCTTAGTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.47
Consensus pattern (16 bp):
ATTGTCATCGCATGTT
Found at i:68794466 original size:50 final size:49
Alignment explanation
Indices: 68794309--68794484 Score: 172
Period size: 50 Copynumber: 3.7 Consensus size: 49
68794299 GGGTTATTAT
* * * *
68794309 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--CGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-CGAGATGTGA
*
68794357 GAGCTAGTGTAAGA-CTTGTCT-GGACAT-GCATCGGCTACGAGATGT--
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-TACGAGATGTGA
* *
68794402 G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGTACGGATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAC-GAGATGTGA
* * *
68794450 GAGCTAGTGTAAGACCATTTTTAGGACATGGCATC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
68794485 AGCCTCGATG
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
43 9 0.09
44 7 0.07
45 21 0.20
46 20 0.19
47 6 0.06
48 14 0.13
49 1 0.01
50 27 0.26
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (49 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGAGATGTGA
Found at i:68794520 original size:99 final size:91
Alignment explanation
Indices: 68794313--68794529 Score: 249
Period size: 91 Copynumber: 2.3 Consensus size: 91
68794303 TATTATGAGC
**
68794313 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACTTGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAGACGAGAGCTAGTGTAAGACTTGTCT
*
68794378 GGACATGCATCGGCTACGAGATGTGT
66 GGACATGCATCGCCTACGAGATGTGT
* * *
68794404 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGGATATGTGAGAGCTAGTGTAAGACCATT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAGA--CGAGAGCTAGTGTAAGA-C-TT
* *
68794469 -TTTAGGACATGGCATCAGCCT-CGATGACGATGGT
62 GTCT-GGACAT-GCATC-GCCTACGA-GATG-T-GT
*
68794503 CAGTGTAAAACCATGTCTGGGACATGG
1 CAGTGTAAGACCATGTCTGGGACATGG
68794530 AGTTTACTCG
Statistics
Matches: 107, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
91 37 0.35
93 16 0.15
94 3 0.03
95 8 0.07
96 8 0.07
97 6 0.06
98 1 0.01
99 28 0.26
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (91 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAGACGAGAGCTAGTGTAAGACTTGTCT
GGACATGCATCGCCTACGAGATGTGT
Found at i:68799467 original size:14 final size:15
Alignment explanation
Indices: 68799440--68799472 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
68799430 CTGGGATATC
68799440 AACACATGAATTAAG
1 AACACATGAATTAAG
68799455 AACACAT-AATTAAG
1 AACACATGAATTAAG
68799469 AACA
1 AACA
68799473 AGTTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.58, C:0.15, G:0.09, T:0.18
Consensus pattern (15 bp):
AACACATGAATTAAG
Found at i:68810827 original size:31 final size:31
Alignment explanation
Indices: 68810789--68810860 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
68810779 AGCCAAAAAA
*
68810789 CCCACATGCCAATGTGAACTTCCCGTGTGGG
1 CCCACATGCCAATGTGAACTACCCGTGTGGG
*** * *
68810820 CCCACATGCTTGTGTGGACTACCCGTTTGGG
1 CCCACATGCCAATGTGAACTACCCGTGTGGG
*
68810851 CCTACATGCC
1 CCCACATGCC
68810861 CAACTTGGCC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.17, C:0.33, G:0.25, T:0.25
Consensus pattern (31 bp):
CCCACATGCCAATGTGAACTACCCGTGTGGG
Found at i:68812216 original size:55 final size:54
Alignment explanation
Indices: 68812121--68812270 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
68812111 CTACTTTGTT
* ** * *
68812121 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
68812175 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
68812230 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
68812271 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:68812233 original size:27 final size:27
Alignment explanation
Indices: 68812093--68812270 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
68812083 TAAATTGTAC
68812093 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
68812120 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
68812146 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
68812174 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
68812202 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
68812229 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
68812256 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68812271 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:68812234 original size:82 final size:81
Alignment explanation
Indices: 68812094--68812249 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
68812084 AAATTGTACA
* * * *
68812094 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
68812159 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
68812175 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
68812238 TGTGCGAGTTGA
63 TGTGCGAATTGA
68812250 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:68819431 original size:55 final size:54
Alignment explanation
Indices: 68819336--68819485 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
68819326 CTACTTTGTT
* ** * *
68819336 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
68819390 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
68819445 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
68819486 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:68819448 original size:27 final size:27
Alignment explanation
Indices: 68819308--68819485 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
68819298 TAAATTGTAC
68819308 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
68819335 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
68819361 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
68819389 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
68819417 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
68819444 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
68819471 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68819486 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:68819449 original size:82 final size:81
Alignment explanation
Indices: 68819309--68819464 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
68819299 AAATTGTACA
* * * *
68819309 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
68819374 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
68819390 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
68819453 TGTGCGAGTTGA
63 TGTGCGAATTGA
68819465 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:68830360 original size:49 final size:49
Alignment explanation
Indices: 68830307--68830537 Score: 286
Period size: 49 Copynumber: 4.7 Consensus size: 49
68830297 TTGGTACGCA
*
68830307 TAGTAGCCTGCACTTAGTACTAAACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
** * *
68830356 TAGTAGCCTGCACTTAGTACTACACACT-TGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACA-TGTGACC-AATTATCCGGTACACG
* * * * * *
68830406 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
* * *
68830457 TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
68830506 TAGTAGCCTGCACTTAGTACTACACA-GTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
68830538 TCACAATAGA
Statistics
Matches: 152, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
48 5 0.03
49 65 0.43
50 46 0.30
51 36 0.24
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:68830470 original size:101 final size:97
Alignment explanation
Indices: 68830307--68830537 Score: 286
Period size: 101 Copynumber: 2.3 Consensus size: 97
68830297 TTGGTACGCA
* * *
68830307 TAGTAGCCTGCACTTAGTACTAAACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACA-GTGACCAATTATCCGGTACACATAATAGCCTGCACTTA
* *
68830372 GTACTACACACT-TGACCTAACCAT-CTGATACACG
65 GTACTACACA-TGCGACC-AACCATCCAG-TACACG
* * * *
68830406 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAATAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACA-GTGA-CCAA-TTATCCGGTACACATAATAGCCTGCACT
**
68830471 TAGTACTACACATGCGACCAATTATCCAGTACACG
63 TAGTACTACACATGCGACCAACCATCCAGTACACG
68830506 TAGTAGCCTGCACTTAGTACTACACAGTGACC
1 TAGTAGCCTGCACTTAGTACTACACAGTGACC
68830538 TCACAATAGA
Statistics
Matches: 114, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
98 1 0.01
99 32 0.28
100 39 0.34
101 42 0.37
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (97 bp):
TAGTAGCCTGCACTTAGTACTACACAGTGACCAATTATCCGGTACACATAATAGCCTGCACTTAG
TACTACACATGCGACCAACCATCCAGTACACG
Found at i:68834487 original size:20 final size:20
Alignment explanation
Indices: 68834462--68834529 Score: 127
Period size: 20 Copynumber: 3.4 Consensus size: 20
68834452 TAATGTACAT
68834462 GCCCGTGTGCTTTGGGACAC
1 GCCCGTGTGCTTTGGGACAC
68834482 GCCCGTGTGCTTTGGGACAC
1 GCCCGTGTGCTTTGGGACAC
68834502 GCCCGTGTGCTTTGGGACAC
1 GCCCGTGTGCTTTGGGACAC
*
68834522 ACCCGTGT
1 GCCCGTGT
68834530 CCCTTACCGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.10, C:0.31, G:0.34, T:0.25
Consensus pattern (20 bp):
GCCCGTGTGCTTTGGGACAC
Found at i:68836978 original size:39 final size:39
Alignment explanation
Indices: 68836924--68837049 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
68836914 TTCAGTGATG
* *
68836924 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGTAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
68836963 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
68837002 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
68837041 TATATCCGG
1 TATATCCGG
68837050 GCTAAAGTCT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:68837076 original size:39 final size:39
Alignment explanation
Indices: 68836924--68837076 Score: 121
Period size: 39 Copynumber: 3.9 Consensus size: 39
68836914 TTCAGTGATG
** * * * * *
68836924 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGTAT
1 TATATCCGGACTTAAAGTCCGCAAGCTATGAGCTGGAAA
* ** * * *
68836963 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAAGCTATGAGCTGGAAA
* * *
68837002 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCGCAAGCTATGAGCTGGAAA
*
68837041 TATATCCGGGC-TAAAGTCTCGCAAGCT-TCGAGCTGG
1 TATATCCGGACTTAAAGTC-CGCAAGCTAT-GAGCTGG
68837077 TATTATACCG
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 7 0.07
39 95 0.93
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAAGCTATGAGCTGGAAA
Found at i:68837076 original size:78 final size:78
Alignment explanation
Indices: 68836924--68837114 Score: 192
Period size: 78 Copynumber: 2.5 Consensus size: 78
68836914 TTCAGTGATG
* * * * ** *
68836924 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGTATTATATCCAGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCAGACTTAAAGTCCGCAAGC
*
68836989 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* *
68837002 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCGGGC-TAAAGTCTCGCAAG
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCAGACTTAAAGTC-CGCAAG
*
68837066 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
** **
68837080 TATA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGG
1 TATATCCGGACTTAAGGT-CCGCAGGCTATGTGCTGG
68837115 TAATTGGTTT
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
77 23 0.24
78 72 0.76
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCAGACTTAAAGTCCGCAAGC
TATGAGCTGGAAT
Found at i:68844901 original size:39 final size:40
Alignment explanation
Indices: 68844809--68844915 Score: 171
Period size: 40 Copynumber: 2.7 Consensus size: 40
68844799 TTCAGTGATG
68844809 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAAT
*
68844849 TATATCCGGACTTAGGGTCCGTAGGCTATGTGCTGG-AAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAAT
* * *
68844888 TATATCCGAACTTAAGGTCCGCAAGCTA
1 TATATCCGGACTTAGGGTCCGCAGGCTA
68844916 CATGCTAGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
39 27 0.44
40 35 0.56
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAAT
Found at i:68849048 original size:4 final size:4
Alignment explanation
Indices: 68849039--68849067 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
68849029 CACAGTCACG
68849039 ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
68849068 GTGTTATGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:68849206 original size:29 final size:28
Alignment explanation
Indices: 68849140--68849213 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
68849130 AAGTCTACAT
* * *
68849140 ACATGCATATGGCCCACTCGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
68849168 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
68849197 ACATTCATATGGCCCAT
1 ACATTCATATGGCCCAT
68849214 CTGGAAAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 20 0.50
29 20 0.50
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:68849467 original size:16 final size:16
Alignment explanation
Indices: 68849446--68849481 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
68849436 TTAGCTAGAC
68849446 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
68849462 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGACA
68849478 TTTC
1 TTTC
68849482 GGGATTTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:68858275 original size:42 final size:43
Alignment explanation
Indices: 68858166--68858278 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
68858156 ATGACATATT
* * * * *
68858166 CCAGATATGGTCTTACATGTAATCTCGTATTGATTCCAATAGC
1 CCAGATATGGTCTTACACGTAGTCTCATATCGATGCCAATAGC
* ** *
68858209 CCAGCTATGGTCTTACACAAAGTCTTATATCGATGCC-AT-GTC
1 CCAGATATGGTCTTACACGTAGTCTCATATCGATGCCAATAG-C
68858251 CCAGATATGGTCTTACACGTAGTCTCAT
1 CCAGATATGGTCTTACACGTAGTCTCAT
68858279 TAACCCTATG
Statistics
Matches: 56, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.02
42 27 0.48
43 28 0.50
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.33
Consensus pattern (43 bp):
CCAGATATGGTCTTACACGTAGTCTCATATCGATGCCAATAGC
Found at i:68861117 original size:68 final size:63
Alignment explanation
Indices: 68860970--68861149 Score: 157
Period size: 68 Copynumber: 2.8 Consensus size: 63
68860960 ACATAGTTTG
* *
68860970 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCTATGTGACCTAGCCAATTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCAATATATCTCGTA
** * *
68861033 GCTCTCTTGT-CTACATGGTTTACACAT-AGTATCACCCATGTGACCTAGCTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGC--CA--AT-ATATC
*
68861096 TTGTA
59 TCGTA
* ** * ** *
68861101 GCTCTCTTGTACACATGATGTGCACTCAGCACCATACGTGTGACCTAGC
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGC
68861150 TACATACTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 41 0.44
64 1 0.01
65 2 0.02
67 3 0.03
68 44 0.47
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCAATATATCTCGTA
Found at i:68861840 original size:30 final size:30
Alignment explanation
Indices: 68861806--68861866 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68861796 TCCTTAACTC
68861806 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
68861836 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
68861866 A
1 A
68861867 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:68868447 original size:27 final size:27
Alignment explanation
Indices: 68868290--68868682 Score: 374
Period size: 27 Copynumber: 14.7 Consensus size: 27
68868280 TAATAAAGAG
* *
68868290 AAATTA-TCGAAATACCC-CTAGTTTATA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
*
68868317 AAATTACTGAAATACCTTC-AGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* *
68868344 AAATTACAGAAATACCCTCGATTTGCA
1 AAATTACTGAAATACCCTCGATTTGTA
*
68868371 AAATTACTG-AATCACCCTTGATTTGTA
1 AAATTACTGAAAT-ACCCTCGATTTGTA
* *
68868398 AAATTACCGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
68868425 AAATTACCGAAATACCTTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
68868451 AAATTACTGAAATAACCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
68868478 AAATTACTAAAATACCAC-CGATTTGTG
1 AAATTACTGAAATACC-CTCGATTTGTA
* *
68868505 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
68868532 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
68868559 CAA-TACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
68868585 AAATTATTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
68868612 AAATTA-TGAAACACCCCCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
68868638 AAACTA-TCGAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
68868665 ATATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
68868683 TGTAGTGTAA
Statistics
Matches: 309, Mismatches: 45, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
26 69 0.22
27 232 0.75
28 8 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:68868509 original size:107 final size:107
Alignment explanation
Indices: 68868311--68868682 Score: 393
Period size: 107 Copynumber: 3.5 Consensus size: 107
68868301 ATACCCCTAG
* * * *
68868311 TTTATAAAATTACTGAAATACCTTC-AGTT-TGTAAAATTACAGAAATACCCTCGATTTGCAAAA
1 TTTATAAAATTACCGAAATACCTTCGA-TTGTGT-AAATTACTGAAATACCCTCAATTTGTAAAA
* * * **
68868374 TTACTGAATCACCCTTGATTTGTAAAATTACCGAAATACCCTTGA
64 TTACTAAAT-ACCCTCGATTTGTAAAATTACCGAAACACCCCCGA
* *
68868419 TTTGTAAAATTACCGAAATACCTTCGATTGTG-AAATTACTGAAATAACCTCAATTTGTAAAATT
1 TTTATAAAATTACCGAAATACCTTCGATTGTGTAAATTACTGAAATACCCTCAATTTGTAAAATT
* *
68868483 ACTAAAATACCAC-CGATTTGTGAAATTACCGAAACACCCTCGA
66 ACT-AAATACC-CTCGATTTGTAAAATTACCGAAACACCCCCGA
* * * *
68868526 TTTGTAAAATTACCAAAACACCCTCGATT-TGTACAA-TACTGAAATACCCTCAATTTGTAAAAT
1 TTTATAAAATTACCGAAATACCTTCGATTGTGTA-AATTACTGAAATACCCTCAATTTGTAAAAT
* * *
68868589 TATTGAAATACCCTCAATTTGTAAAATTA-TGAAACACCCCCGA
65 TACT-AAATACCCTCGATTTGTAAAATTACCGAAACACCCCCGA
* * *
68868632 TTTATAAAACTATCGAAATACCCTT-G-TAGTGTAATATTACTGAAATACCCT
1 TTTATAAAATTACCGAAATA-CCTTCGATTGTGTAA-ATTACTGAAATACCCT
68868683 TGTAGTGTAA
Statistics
Matches: 225, Mismatches: 28, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
105 2 0.01
106 36 0.16
107 153 0.68
108 31 0.14
109 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (107 bp):
TTTATAAAATTACCGAAATACCTTCGATTGTGTAAATTACTGAAATACCCTCAATTTGTAAAATT
ACTAAATACCCTCGATTTGTAAAATTACCGAAACACCCCCGA
Found at i:68868557 original size:134 final size:133
Alignment explanation
Indices: 68868297--68868634 Score: 398
Period size: 134 Copynumber: 2.5 Consensus size: 133
68868287 GAGAAATTAT
* * *
68868297 CGAAATACCC-CTAGTTTATAAAATTACTGAAAT-ACCTTCAGTTTGTAAAATTAC-AGAAATAC
1 CGAAATACCCTC-AATTTGTAAAATTACTGAAATAACC-TCAATTTGTAAAATTACTA-AAATAC
* * * * * *
68868359 CCTCGATTTGCAAAATTACTGAATCACCCTTGATTTGTAAAATTACCGAAATACCCTTGATTTGT
63 CC-CGATTTGCAAAATTACCGAAACACCCTCGATTTGTAAAATTACCAAAACACCCTCGATTTGT
68868424 AAAATTAC
127 AAAA-TAC
* * *
68868432 CGAAATACCTTCGA-TTGTGAAATTACTGAAATAACCTCAATTTGTAAAATTACTAAAATACCAC
1 CGAAATACCCTCAATTTGTAAAATTACTGAAATAACCTCAATTTGTAAAATTACTAAAATACC-C
** *
68868496 CGATTTGTGAAATTACCGAAACACCCTCGATTTGTAAAATTACCAAAACACCCTCGATTTGTACA
65 CGATTTGCAAAATTACCGAAACACCCTCGATTTGTAAAATTACCAAAACACCCTCGATTTGTAAA
68868561 ATAC
130 ATAC
* * * * *
68868565 TGAAATACCCTCAATTTGTAAAATTATTGAAATACCCTCAATTTGTAAAATTA-TGAAACACCCC
1 CGAAATACCCTCAATTTGTAAAATTACTGAAATAACCTCAATTTGTAAAATTACTAAAATA-CCC
68868629 CGATTT
65 CGATTT
68868635 ATAAAACTAT
Statistics
Matches: 174, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
133 26 0.15
134 133 0.76
135 14 0.08
136 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (133 bp):
CGAAATACCCTCAATTTGTAAAATTACTGAAATAACCTCAATTTGTAAAATTACTAAAATACCCC
GATTTGCAAAATTACCGAAACACCCTCGATTTGTAAAATTACCAAAACACCCTCGATTTGTAAAA
TAC
Found at i:68868665 original size:80 final size:80
Alignment explanation
Indices: 68868315--68868682 Score: 377
Period size: 80 Copynumber: 4.6 Consensus size: 80
68868305 CCCTAGTTTA
* * * *
68868315 TAAAATTACTGAAATACCTTCAGTTTGTAAAATTACAGAAATACCCTCGATTTGCAAAATTACTG
1 TAAAATTACTGAAATACCCTGA-TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTG
* *
68868380 AATCACCCTTGATTTG
65 AAACACCCTCGATTTG
* * *
68868396 TAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAATACCTTCGA-TTGTGAAATTACTG
1 TAAAATTACTGAAATACCC-TGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTG
* * *
68868460 AAATAACCTCAATTTG
65 AAACACCCTCGATTTG
* * * * **
68868476 TAAAATTACTAAAATACCACCGATTTGTGAAATTACCGAAACACCCTCGATTTGTAAAATTACCA
1 TAAAATTACTGAAATACC-CTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTG
68868541 AAACACCCTCGATTTG
65 AAACACCCTCGATTTG
* * ** *
68868557 TACAA-TACTGAAATACCCTCAATTTGTAAAATTATTGAAATACCCTCAATTTGTAAAATTA-TG
1 TAAAATTACTGAAATACCCT-GATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTG
* *
68868620 AAACACCCCCGATTTA
65 AAACACCCTCGATTTG
* * * *
68868636 TAAAACTA-TCGAAATACCCTTG-TAGTGTAATATTACTGAAATACCCT
1 TAAAATTACT-GAAATACCC-TGAT-TTGTAAAATTACCGAAATACCCT
68868683 TGTAGTGTAA
Statistics
Matches: 237, Mismatches: 42, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
79 21 0.09
80 142 0.60
81 72 0.30
82 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (80 bp):
TAAAATTACTGAAATACCCTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACTGA
AACACCCTCGATTTG
Found at i:68868706 original size:27 final size:27
Alignment explanation
Indices: 68868645--68868725 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
68868635 ATAAAACTAT
* *
68868645 CGAAATACCCTTGTAGTGTAATATTAC
1 CGAAATACCCTTGTAGTGTAAAATGAC
*
68868672 TGAAATACCCTTGTAGTGTAAAATGAC
1 CGAAATACCCTTGTAGTGTAAAATGAC
* * * *
68868699 CGACATACCCCTATAGGGTAAAATGAC
1 CGAAATACCCTTGTAGTGTAAAATGAC
68868726 TATTTTGCCC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (27 bp):
CGAAATACCCTTGTAGTGTAAAATGAC
Found at i:68879492 original size:19 final size:18
Alignment explanation
Indices: 68879463--68879509 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
68879453 AATTATTATT
*
68879463 TAATT-AATTTTAATTAAA
1 TAATTAAATTTTAAAT-AA
68879481 TAATTAAATTTTTAAATAA
1 TAATTAAA-TTTTAAATAA
68879500 TAATTAAATT
1 TAATTAAATT
68879510 AATTAGTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 7 0.27
19 12 0.46
20 7 0.27
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAATTAAATTTTAAATAA
Found at i:68879632 original size:17 final size:17
Alignment explanation
Indices: 68879612--68879647 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
68879602 TAGAATTGAG
68879612 TTGAGAAAATAATTTAA
1 TTGAGAAAATAATTTAA
* *
68879629 TTGAGAGATTAATTTAA
1 TTGAGAAAATAATTTAA
68879646 TT
1 TT
68879648 AATTAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (17 bp):
TTGAGAAAATAATTTAA
Found at i:68883081 original size:13 final size:13
Alignment explanation
Indices: 68883063--68883102 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
68883053 GCTCGACAGG
68883063 GACACGCCTGTGT
1 GACACGCCTGTGT
68883076 GACACGCCTGTGT
1 GACACGCCTGTGT
*
68883089 GACACGCCCGTGT
1 GACACGCCTGTGT
68883102 G
1 G
68883103 CGATTGCTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.20
Consensus pattern (13 bp):
GACACGCCTGTGT
Found at i:68885170 original size:16 final size:16
Alignment explanation
Indices: 68885149--68885185 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
68885139 AGGATGCAAT
*
68885149 AAAAATAAAATTAAAG
1 AAAAATAAAATAAAAG
*
68885165 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAG
68885181 AAAAA
1 AAAAA
68885186 AGTAAGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:68889423 original size:64 final size:63
Alignment explanation
Indices: 68889344--68889527 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 63
68889334 AGACATTATG
* * *
68889344 ATGTAGCTAGGTCGCATGGTTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGG-TGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
68889408 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATG-GTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
68889473 AA
62 AA
* * *
68889475 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCAT-GGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
68889528 CGAACTATAA
Statistics
Matches: 99, Mismatches: 14, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 24 0.24
65 1 0.01
66 20 0.20
67 34 0.34
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:68893151 original size:42 final size:46
Alignment explanation
Indices: 68893051--68893151 Score: 129
Period size: 48 Copynumber: 2.2 Consensus size: 46
68893041 CCTATGCAAG
* *
68893051 TGTAAGACCATATCTAGGATATGACATCGATATCGGTATGTGATTTCA
1 TGTAAGACCATATCTAGGATATG--ATCGATATCGATATGAGATTTCA
*
68893099 TGTAAGACCATATCTAGGATATG-TCG-T-T-GATATGAGATTTTA
1 TGTAAGACCATATCTAGGATATGATCGATATCGATATGAGATTTCA
68893141 TGTAAGACCAT
1 TGTAAGACCAT
68893152 GTCTGGGACA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
42 22 0.44
43 1 0.02
44 1 0.02
45 3 0.06
48 23 0.46
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.35
Consensus pattern (46 bp):
TGTAAGACCATATCTAGGATATGATCGATATCGATATGAGATTTCA
Found at i:68898875 original size:29 final size:29
Alignment explanation
Indices: 68898830--68899035 Score: 193
Period size: 29 Copynumber: 7.1 Consensus size: 29
68898820 TGTGCTAAAT
* *
68898830 GATGGTCGTAACCATCCCTTTCCATATTC
1 GATGGTCGTCACCATCCCTTTTCATATTC
*
68898859 GAGGGTCGTCACCATCCCTTTTCATATTC
1 GATGGTCGTCACCATCCCTTTTCATATTC
* ** *
68898888 GATGGCCGAAACCATTCCTTTTGTCA-A-TC
1 GATGGTCGTCACCA-TCCCTTT-TCATATTC
68898917 GATGGTCGTCACCATCCCTTTTCATAGTT-
1 GATGGTCGTCACCATCCCTTTTCATA-TTC
* **
68898946 GATGGTCATCACCATCCCTTTTCATAACC
1 GATGGTCGTCACCATCCCTTTTCATATTC
** *** * * *
68898975 GATATTCAAAACTATCCCTTTTCGTGTTC
1 GATGGTCGTCACCATCCCTTTTCATATTC
*
68899004 GATGGTCGTCACCATCCCTTTTCATAGTC
1 GATGGTCGTCACCATCCCTTTTCATATTC
68899033 GAT
1 GAT
68899036 AATCGAAACT
Statistics
Matches: 138, Mismatches: 33, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
27 3 0.02
28 7 0.05
29 117 0.85
30 8 0.06
31 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (29 bp):
GATGGTCGTCACCATCCCTTTTCATATTC
Found at i:68898937 original size:87 final size:87
Alignment explanation
Indices: 68898830--68899034 Score: 243
Period size: 87 Copynumber: 2.4 Consensus size: 87
68898820 TGTGCTAAAT
* * * ** *
68898830 GATGGTCGTAACCATCCCTTTCCATATTCGAGGGTCGTCACCATCCCTTTTCATATTCGATGGCC
1 GATGGTCGTCACCATCCCTTTTCATATTCGAGGGTCATCACCATCCCTTTTCATAACCGATAGCC
* *
68898895 GAAACCATTCCTTTT-GTCAATC
66 AAAACCATCCCTTTTCGT-AATC
* **
68898917 GATGGTCGTCACCATCCCTTTTCATAGTT-GATGGTCATCACCATCCCTTTTCATAACCGATATT
1 GATGGTCGTCACCATCCCTTTTCATA-TTCGAGGGTCATCACCATCCCTTTTCATAACCGATAGC
* **
68898981 CAAAACTATCCCTTTTCGTGTTC
65 CAAAACCATCCCTTTTCGTAATC
*
68899004 GATGGTCGTCACCATCCCTTTTCATAGTCGA
1 GATGGTCGTCACCATCCCTTTTCATATTCGA
68899035 TAATCGAAAC
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
86 1 0.01
87 95 0.95
88 4 0.04
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (87 bp):
GATGGTCGTCACCATCCCTTTTCATATTCGAGGGTCATCACCATCCCTTTTCATAACCGATAGCC
AAAACCATCCCTTTTCGTAATC
Found at i:68898992 original size:58 final size:58
Alignment explanation
Indices: 68898930--68899055 Score: 182
Period size: 58 Copynumber: 2.2 Consensus size: 58
68898920 GGTCGTCACC
*
68898930 ATCCCTTTTCATAGTT-GATGGTCATCACCATCCCTTTTCATAACCGATATTCAAAACT
1 ATCCCTTTTCAT-GTTCGATGGTCATCACCATCCCTTTTCATAACCGATAATCAAAACT
* * ** *
68898988 ATCCCTTTTCGTGTTCGATGGTCGTCACCATCCCTTTTCATAGTCGATAATCGAAACT
1 ATCCCTTTTCATGTTCGATGGTCATCACCATCCCTTTTCATAACCGATAATCAAAACT
68899046 ATCCCTTTTC
1 ATCCCTTTTC
68899056 TTTAATCGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 3 0.05
58 58 0.95
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (58 bp):
ATCCCTTTTCATGTTCGATGGTCATCACCATCCCTTTTCATAACCGATAATCAAAACT
Found at i:68899049 original size:29 final size:29
Alignment explanation
Indices: 68898959--68899055 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
68898949 GGTCATCACC
** * *
68898959 ATCCCTTTTCATAACCGATATTCAAAACT
1 ATCCCTTTTCATAGTCGATAATCGAAACT
* ** ** *
68898988 ATCCCTTTTCGT-GTTCGATGGTCGTCACC
1 ATCCCTTTTCATAG-TCGATAATCGAAACT
68899017 ATCCCTTTTCATAGTCGATAATCGAAACT
1 ATCCCTTTTCATAGTCGATAATCGAAACT
68899046 ATCCCTTTTC
1 ATCCCTTTTC
68899056 TTTAATCGAT
Statistics
Matches: 51, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
29 50 0.98
30 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAGTCGATAATCGAAACT
Found at i:68913189 original size:48 final size:48
Alignment explanation
Indices: 68913136--68913326 Score: 265
Period size: 48 Copynumber: 4.0 Consensus size: 48
68913126 AAATCTTGTA
* * * *
68913136 TAAGACCATATCTGGGATTTGGCATCGGCATCAATATGAGATCCCTTG
1 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCATG
* * * * *
68913184 TAAGACCATATTTGGGATATGACATAGGCATCGAGATGAGATCCCGTG
1 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCATG
*
68913232 TAAGACCATATCTGGGATATGGCATTGGCATCGACATGAGATCCCATG
1 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCATG
* * *
68913280 TAAGACCATATCTGGGATATGGAATTGGAATCGATATGAGGTCCCAT
1 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCAT
68913327 ATAAAACTAT
Statistics
Matches: 127, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 127 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (48 bp):
TAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCATG
Done.