Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 211 of 316
Found at i:68913344 original size:96 final size:96
Alignment explanation
Indices: 68913134--68913353 Score: 262
Period size: 96 Copynumber: 2.3 Consensus size: 96
68913124 TGAAATCTTG
* * * * *
68913134 TATAAGACCATATCTGGGATTTGGCATCGGCATCAATATGAGATCCCTTGTAAGACCATATTTGG
1 TATAAAACCATATCTGGGATATGGCATCGGCATCAACATGAGATCCCATGTAAGACCATATCTGG
* *
68913199 GATATGACATAGGCATCGAGATGAGATCCCG
66 GATATGACATAGGAATCGAGATGAGATCCCA
* * * *
68913230 TGTAAGACCATATCTGGGATATGGCATTGGCATCGACATGAGATCCCATGTAAGACCATATCTGG
1 TATAAAACCATATCTGGGATATGGCATCGGCATCAACATGAGATCCCATGTAAGACCATATCTGG
* * *
68913295 GATATGGA-ATTGGAATCGATATGAGGTCCCA
66 GATAT-GACATAGGAATCGAGATGAGATCCCA
* * * *
68913326 TATAAAACTATTTTTGGGACATGGCATC
1 TATAAAACCATATCTGGGATATGGCATC
68913354 AGCACTGTTA
Statistics
Matches: 104, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
96 102 0.98
97 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (96 bp):
TATAAAACCATATCTGGGATATGGCATCGGCATCAACATGAGATCCCATGTAAGACCATATCTGG
GATATGACATAGGAATCGAGATGAGATCCCA
Found at i:68913367 original size:96 final size:96
Alignment explanation
Indices: 68913134--68913401 Score: 252
Period size: 96 Copynumber: 2.8 Consensus size: 96
68913124 TGAAATCTTG
* ** * * * *
68913134 TATAAGACCATATCTGGGATTTGGCATCGGCATCAATATGAGATCCCTTGTAAGACCATATTTGG
1 TATAAAACCATATCTGGGACATGGCATCAGCATCGATATGAGATCCCATGTAAGACCATATCTGG
* *
68913199 GATATGACATAGGCATCGAGATGAGATCCCG
66 GATATGACATAGGAATCGAGATGAGATCCCA
* * * ** *
68913230 TGTAAGACCATATCTGGGATATGGCATTGGCATCGACATGAGATCCCATGTAAGACCATATCTGG
1 TATAAAACCATATCTGGGACATGGCATCAGCATCGATATGAGATCCCATGTAAGACCATATCTGG
* * *
68913295 GATATGGA-ATTGGAATCGATATGAGGTCCCA
66 GATAT-GACATAGGAATCGAGATGAGATCCCA
* * * * ** * *
68913326 TATAAAACTATTTTTGGGACATGGCATCAGCA-CTGTTATGAGATTTCGTGTAAGACCATAGCTG
1 TATAAAACCATATCTGGGACATGGCATCAGCATC-GATATGAGATCCCATGTAAGACCATATCTG
*
68913390 GGCTATTGACAT
65 GGATA-TGACAT
68913402 TGATGTGTGA
Statistics
Matches: 141, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
95 1 0.01
96 135 0.96
97 5 0.04
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (96 bp):
TATAAAACCATATCTGGGACATGGCATCAGCATCGATATGAGATCCCATGTAAGACCATATCTGG
GATATGACATAGGAATCGAGATGAGATCCCA
Found at i:68917877 original size:30 final size:30
Alignment explanation
Indices: 68917836--68917904 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
68917826 CACACGGGTA
*
68917836 GACACACGGGTGTGTATCTAGGCCGTGCGT
1 GACACATGGGTGTGTATCTAGGCCGTGCGT
68917866 GACACATGGGTGTGTATCTAGGCCGTGCGT
1 GACACATGGGTGTGTATCTAGGCCGTGCGT
68917896 GACACATGG
1 GACACATGG
68917905 TCAGTCCACA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.19, C:0.22, G:0.36, T:0.23
Consensus pattern (30 bp):
GACACATGGGTGTGTATCTAGGCCGTGCGT
Found at i:68928838 original size:40 final size:40
Alignment explanation
Indices: 68928787--68929049 Score: 352
Period size: 40 Copynumber: 6.6 Consensus size: 40
68928777 TTGAATGCTG
* * * * *
68928787 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAA
* *
68928827 TCCGGATTAAGTTCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
68928867 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
68928907 TCCGGGTTAAGTCCCGAAGGCATACGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
68928947 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * **
68928987 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* *
68929026 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68929050 TGAACGAGGA
Statistics
Matches: 204, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 35 0.17
40 161 0.79
41 8 0.04
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:68936511 original size:40 final size:40
Alignment explanation
Indices: 68936460--68936722 Score: 343
Period size: 40 Copynumber: 6.6 Consensus size: 40
68936450 TTGAATGCTG
* * * * *
68936460 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAA
* **
68936500 TCCGGATTAAGTTTCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
68936540 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
68936580 TCCGGGTTAAGTCCCGAAGGCATACGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
68936620 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * **
68936660 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* *
68936699 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68936723 TGAACGAGGA
Statistics
Matches: 202, Mismatches: 19, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
39 35 0.17
40 159 0.79
41 8 0.04
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:68940684 original size:27 final size:27
Alignment explanation
Indices: 68940653--68940830 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
68940643 TAAATTGTAC
68940653 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68940680 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
68940706 ATGCACTAAGTGTGCGAATTGACTATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68940734 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68940762 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68940789 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68940816 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68940831 GACTCAATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68940821 original size:82 final size:81
Alignment explanation
Indices: 68940650--68940830 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
68940640 GATTAAATTG
* *
68940650 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68940715 GTGTGCGAATTGACTA
66 GTGTGCGAATTGACTA
* * ** *
68940731 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
68940795 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACTA
* *
68940813 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68940831 GACTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACTA
Found at i:68944016 original size:40 final size:39
Alignment explanation
Indices: 68943932--68944116 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
68943922 TCGAATGATG
* * * * *
68943932 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
68943972 TCCGGATTAAGATCTGAAGGAATTTGTGTGAGTTACTAAT
1 TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
68944012 TCCGGGTTAAGCCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
68944051 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
68944092 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGT-CCGAAGGCATTTG
68944117 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
39 32 0.27
40 76 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68952137 original size:79 final size:81
Alignment explanation
Indices: 68952001--68952183 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
68951991 TCGAATGATG
* *
68952001 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
68952065 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
68952080 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
68952142 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
68952160 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68952184 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:68952199 original size:40 final size:40
Alignment explanation
Indices: 68952002--68952185 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
68951992 CGAATGATGT
* * * *
68952002 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
68952042 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
68952082 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68952120 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68952161 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
68952186 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:68952207 original size:79 final size:79
Alignment explanation
Indices: 68952054--68952208 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
68952044 GGACTAAGAT
* **
68952054 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
68952119 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
68952133 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
68952196 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
68952209 ATTCGAAGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:68964518 original size:59 final size:59
Alignment explanation
Indices: 68964444--68964557 Score: 201
Period size: 59 Copynumber: 1.9 Consensus size: 59
68964434 GCAATCAGAC
*
68964444 GGAGCGGCATAGGAAGGGAGTCATATCCATTGGCCCTTATATGACTCACCTAGCAGGGT
1 GGAGCGGCATAGGAAGGGAGTCATATCCATTGGCCCTTATATGACCCACCTAGCAGGGT
* *
68964503 GGAGCGGCATGGGAAGGGAGTCATATCCATTGGCCCTTATATGACCCGCCTAGCA
1 GGAGCGGCATAGGAAGGGAGTCATATCCATTGGCCCTTATATGACCCACCTAGCA
68964558 CGGTATTTGG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.25, C:0.24, G:0.31, T:0.21
Consensus pattern (59 bp):
GGAGCGGCATAGGAAGGGAGTCATATCCATTGGCCCTTATATGACCCACCTAGCAGGGT
Found at i:68969984 original size:40 final size:40
Alignment explanation
Indices: 68969894--68970114 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
68969884 ACCCAAGTAT
* ** * *
68969894 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
68969932 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
68969972 CTTTGGGACTTAGCCCGGATATATTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*** * * *
68970012 CTTCGGTTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
68970052 CTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
68970093 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
68970115 CATTCGAATA
Statistics
Matches: 146, Mismatches: 32, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
38 11 0.08
39 16 0.11
40 89 0.61
41 27 0.18
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:68990177 original size:21 final size:22
Alignment explanation
Indices: 68990138--68990178 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
68990128 TTGAATTGGT
68990138 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
68990160 CACACGGGTGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
68990179 GTGTTTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:69002889 original size:39 final size:39
Alignment explanation
Indices: 69002835--69002924 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
69002825 GCATGATACT
69002835 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* *
69002874 TGGAAACATATCCGGACTTGAGGTCCGTAGGCTATGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
69002913 TGGAAATATATC
1 TGGAAACATATC
69002925 TGGGCTTAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:69019672 original size:39 final size:39
Alignment explanation
Indices: 69019626--69019704 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
69019616 CTAGCCAGGC
* * *
69019626 TAAATTCAGACCCTAATCGGATTACCCATCTGGGCTAAA
1 TAAATTCAAACCCTAACCGGATTACCCATCCGGGCTAAA
*
69019665 TAAATTCAAACCCTAACCGGATTACCCTTCCGGGCTAAA
1 TAAATTCAAACCCTAACCGGATTACCCATCCGGGCTAAA
69019704 T
1 T
69019705 CCATAATGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (39 bp):
TAAATTCAAACCCTAACCGGATTACCCATCCGGGCTAAA
Found at i:69020692 original size:11 final size:11
Alignment explanation
Indices: 69020678--69020702 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
69020668 TCATTTTTTC
69020678 CATTTTTATTT
1 CATTTTTATTT
69020689 CATTTTTATTT
1 CATTTTTATTT
69020700 CAT
1 CAT
69020703 ACAAATTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (11 bp):
CATTTTTATTT
Found at i:69035964 original size:15 final size:16
Alignment explanation
Indices: 69035944--69035973 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69035934 TGGTGCCTTG
69035944 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
69035959 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
69035974 AACATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:69049663 original size:29 final size:29
Alignment explanation
Indices: 69049612--69049934 Score: 170
Period size: 29 Copynumber: 11.2 Consensus size: 29
69049602 TGTGCTAATT
* * * * *
69049612 ATGGTCATAACCACCCCTTTTCATATTCT
1 ATGGTCGTCACCATCCCTTTTCATAATCG
* *
69049641 ATTGTCGTTACCATCCCTTTTCATTAATCG
1 ATGGTCGTCACCATCCCTTTTCA-TAATCG
* *
69049671 ATGGTCGTCACCATCCCTTTCCAT-AGCTG
1 ATGGTCGTCACCATCCCTTTTCATAATC-G
* * * *
69049700 ATGGTCGTCACTAT-CCATTTCATAGTCA
1 ATGGTCGTCACCATCCCTTTTCATAATCG
* * ** * *
69049728 ATAGTTGAAACTATCCCTTTTCAT-ATACA
1 ATGGTCGTCACCATCCCTTTTCATAAT-CG
* * * * *
69049757 ATGGTTGTCACTATCCTTTTTCATAGTTG
1 ATGGTCGTCACCATCCCTTTTCATAATCG
* * *
69049786 ATGGTCATCACCATCCCTTTTCATATTTG
1 ATGGTCGTCACCATCCCTTTTCATAATCG
* * * * *
69049815 ATGGTCATCGCCA-ACC-TTTCATAGTTG
1 ATGGTCGTCACCATCCCTTTTCATAATCG
* * * * * *
69049842 ATTGTCATCACCATCCATTTTTATAGTTG
1 ATGGTCGTCACCATCCCTTTTCATAATCG
* *
69049871 ATGGTCGTCACCATTCTTTTTCATAATCG
1 ATGGTCGTCACCATCCCTTTTCATAATCG
* ** * * *
69049900 ATAGTCGAAACCATCCCTTTTTAAAATTG
1 ATGGTCGTCACCATCCCTTTTCATAATCG
69049929 ATGGTC
1 ATGGTC
69049935 AAATAACCCC
Statistics
Matches: 228, Mismatches: 58, Indels: 16
0.75 0.19 0.05
Matches are distributed among these distances:
27 21 0.09
28 23 0.10
29 159 0.70
30 25 0.11
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (29 bp):
ATGGTCGTCACCATCCCTTTTCATAATCG
Found at i:69049921 original size:58 final size:58
Alignment explanation
Indices: 69049621--69049934 Score: 201
Period size: 58 Copynumber: 5.4 Consensus size: 58
69049611 TATGGTCATA
* * * * * * *
69049621 ACCACCCCTTTTCATA-TTCTATTGTCGTTACCATCCCTTTTCATTAATCGATGGTCGTC
1 ACCATCCCTTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCA-TAGTCGATAGTCGAC
* * * * * * *
69049680 ACCATCCCTTTCCATAGCTGATGGTCGTCACTAT-CCATTTCATAGTCAATAGTTGAA
1 ACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAC
* ** * * * * *
69049737 ACTATCCCTTTTCATA-TACAATGGTTGTCACTATCCTTTTTCATAGTTGATGGTC-ATC
1 ACCATCCCTTTTCATAGT-TGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGA-C
* * * * * *
69049795 ACCATCCCTTTTCATATTTGATGGTCATCGCCA-ACC-TTTCATAGTTGATTGTC-ATC
1 ACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGA-C
* * * * * *
69049851 ACCATCCATTTTTATAGTTGATGGTCGTCACCATTCTTTTTCATAATCGATAGTCGAA
1 ACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAC
* * *
69049909 ACCATCCCTTTTTAAAATTGATGGTC
1 ACCATCCCTTTTCATAGTTGATGGTC
69049935 AAATAACCCC
Statistics
Matches: 196, Mismatches: 51, Indels: 17
0.74 0.19 0.06
Matches are distributed among these distances:
56 47 0.24
57 39 0.20
58 82 0.42
59 27 0.14
60 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.39
Consensus pattern (58 bp):
ACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAC
Found at i:69062861 original size:29 final size:29
Alignment explanation
Indices: 69062818--69062967 Score: 144
Period size: 29 Copynumber: 5.1 Consensus size: 29
69062808 AGTGTGATAA
* *
69062818 CGATGGTCATAACCA-CCTCTTTTCATATT
1 CGATGGTCGTCACCATCC-CTTTTCATATT
69062847 CGATGGTCGTCACCATCCCTTTTCATTAATT
1 CGATGGTCGTCACCATCCCTTTTCA-T-ATT
* * *
69062878 -GATGATCGTCACCTTCCCTTTTCATAGT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* ** * *
69062906 CGATAGTCGAAACTATCCCATTTCAT-TT
1 CGATGGTCGTCACCATCCCTTTTCATATT
*
69062934 ACGATGGTCGTCACCATCCCTTTTCATAAT
1 -CGATGGTCGTCACCATCCCTTTTCATATT
69062964 CGAT
1 CGAT
69062968 ACTCAAAACT
Statistics
Matches: 96, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
28 3 0.03
29 64 0.67
30 26 0.27
31 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.37
Consensus pattern (29 bp):
CGATGGTCGTCACCATCCCTTTTCATATT
Found at i:69062967 original size:58 final size:58
Alignment explanation
Indices: 69062815--69062999 Score: 176
Period size: 58 Copynumber: 3.2 Consensus size: 58
69062805 CAAAGTGTGA
* * * * ** * *
69062815 TAACGATGGTCATAACCA-CCTCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCAT
1 TAACGATGGTCGTCACCATCC-CTTTTCATAATCGATAGTCGAAACTATCCCATTTCAT
* * * *
69062873 TAATTGATGATCGTCACCTTCCCTTTTCATAGTCGATAGTCGAAACTATCCCATTTCAT
1 TAA-CGATGGTCGTCACCATCCCTTTTCATAATCGATAGTCGAAACTATCCCATTTCAT
* * * * *
69062932 TTACGATGGTCGTCACCATCCCTTTTCATAATCGATACTCAAAACTATCCC-TTTTAA
1 TAACGATGGTCGTCACCATCCCTTTTCATAATCGATAGTCGAAACTATCCCATTTCAT
69062989 TAATCGATGGT
1 TAA-CGATGGT
69063000 GAAAACCATC
Statistics
Matches: 103, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
57 6 0.06
58 52 0.50
59 43 0.42
60 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.36
Consensus pattern (58 bp):
TAACGATGGTCGTCACCATCCCTTTTCATAATCGATAGTCGAAACTATCCCATTTCAT
Found at i:69063004 original size:29 final size:29
Alignment explanation
Indices: 69062946--69063015 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
69062936 GATGGTCGTC
*
69062946 ACCATCCCTTTTCATAATCGATACTCAAA
1 ACCATCCCTTTTAATAATCGATACTCAAA
* ** *
69062975 ACTATCCCTTTTAATAATCGATGGTGAAA
1 ACCATCCCTTTTAATAATCGATACTCAAA
*
69063004 ACCATCCTTTTT
1 ACCATCCCTTTT
69063016 CATTGATCGA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (29 bp):
ACCATCCCTTTTAATAATCGATACTCAAA
Found at i:69063008 original size:58 final size:58
Alignment explanation
Indices: 69062892--69063027 Score: 141
Period size: 58 Copynumber: 2.3 Consensus size: 58
69062882 ATCGTCACCT
* * * * * **
69062892 TCCCTTTTCATAGTCGATAGTCGAAACTATCCCATTTCATTTACGATGGTCGTCACCA
1 TCCCTTTTCATAATCGATACTCAAAACTATCCCATTTAATATACGATGGTCGAAACCA
*
69062950 TCCCTTTTCATAATCGATACTCAAAACTATCCCTTTTAATA-ATCGATGGT-GAAAACCA
1 TCCCTTTTCATAATCGATACTCAAAACTATCCCATTTAATATA-CGATGGTCG-AAACCA
* *
69063008 TCCTTTTTCATTGATCGATA
1 TCCCTTTTCA-TAATCGATA
69063028 ACCATCAATA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
57 2 0.03
58 55 0.85
59 8 0.12
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (58 bp):
TCCCTTTTCATAATCGATACTCAAAACTATCCCATTTAATATACGATGGTCGAAACCA
Found at i:69065494 original size:46 final size:46
Alignment explanation
Indices: 69065441--69065566 Score: 200
Period size: 46 Copynumber: 2.7 Consensus size: 46
69065431 TTGGGCATCT
*
69065441 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCT-C
69065487 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTC
* * *
69065533 GAGCCCGTTGAGTTGAGTCCGAATTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69065567 GGGATTACAT
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
46 74 0.99
47 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTC
Found at i:69065916 original size:27 final size:27
Alignment explanation
Indices: 69065878--69065932 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
69065868 TGCTATTTGC
69065878 ATGTGAGCTTACTAAGCATTTATGCTT
1 ATGTGAGCTTACTAAGCATTTATGCTT
69065905 ATGTGAGCTTACTAAGCATTTATGCTT
1 ATGTGAGCTTACTAAGCATTTATGCTT
69065932 A
1 A
69065933 CTCTCTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (27 bp):
ATGTGAGCTTACTAAGCATTTATGCTT
Found at i:69067914 original size:29 final size:29
Alignment explanation
Indices: 69067882--69067941 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
69067872 GTTGTTTTAC
69067882 AAATTCTGTGGGATAAGTAGTTGCTTGCT
1 AAATTCTGTGGGATAAGTAGTTGCTTGCT
69067911 AAATTCTGTGGGATAAGTAGTTGCTTGCT
1 AAATTCTGTGGGATAAGTAGTTGCTTGCT
69067940 AA
1 AA
69067942 GTTAAGTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.37
Consensus pattern (29 bp):
AAATTCTGTGGGATAAGTAGTTGCTTGCT
Found at i:69069466 original size:42 final size:42
Alignment explanation
Indices: 69069405--69069568 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
69069395 TTAGAGTTAC
* * *
69069405 TGAGACTAT-GTGTACGACCATATTTGGGTTATGGCATCAATA
1 TGAGACT-TCGTGTAAGACCATATCTGGGATATGGCATCAATA
*
69069447 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATA
* * * * *
69069489 TGAGACTTCGTGTAAGACCATAGCTGAGCTATTAGCATCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATA-TGGCATCAATA
* * * *
69069532 CGAGA-TCCAATGTAAGACCATATCTTGGATATGGCAT
1 TGAGACTTC-GTGTAAGACCATATCTGGGATATGGCAT
69069569 TGGTATGGTA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 1 0.01
42 71 0.69
43 31 0.30
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:69086023 original size:46 final size:47
Alignment explanation
Indices: 69085973--69086099 Score: 147
Period size: 47 Copynumber: 2.7 Consensus size: 47
69085963 TTGAGCATCT
69085973 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAGATCC
* * *
69086019 GAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G-ATCC
69086066 GAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
69086100 GCGGGTTACA
Statistics
Matches: 68, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 26 0.38
47 29 0.43
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAGATCC
Found at i:69091199 original size:40 final size:40
Alignment explanation
Indices: 69091091--69091231 Score: 149
Period size: 40 Copynumber: 3.4 Consensus size: 40
69091081 GCTATAAAAT
* * *
69091091 ATTGCACACTTAGTGCCATCATATTCAACCGAAACTATCTCAA
1 ATTGCACACTTAGTGCCA-CATA-T-AGCCGAAGCTATTTCAA
* * *
69091134 TATTGCACACTTAGTGCCACATATAGTCGAAGCTCTTT-TA
1 -ATTGCACACTTAGTGCCACATATAGCCGAAGCTATTTCAA
* **
69091174 ATTCGCACACTTAGTGCTATTTATAGCCGAAGCTATTTCAA
1 ATT-GCACACTTAGTGCCACATATAGCCGAAGCTATTTCAA
69091215 ATTGCACACTTAGTGCC
1 ATTGCACACTTAGTGCC
69091232 GAACATAGTC
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
39 3 0.04
40 43 0.52
41 13 0.16
42 1 0.01
43 4 0.05
44 18 0.22
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (40 bp):
ATTGCACACTTAGTGCCACATATAGCCGAAGCTATTTCAA
Found at i:69097879 original size:15 final size:15
Alignment explanation
Indices: 69097840--69097919 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
69097830 GTATCTTGGG
*
69097840 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
69097855 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
69097870 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
69097885 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
69097900 TTTCTTTATTC-GGC
1 TTTCTTTATTCTGGA
69097914 TTTCTT
1 TTTCTT
69097920 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.20, G:0.14, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:69097909 original size:30 final size:30
Alignment explanation
Indices: 69097831--69097918 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
69097821 CATAGTATCG
* * *
69097831 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
69097861 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
69097891 TATCTTGGATTTCTTTATT-CGGCTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
69097919 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.19, G:0.16, T:0.55
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:69100348 original size:46 final size:46
Alignment explanation
Indices: 69100292--69100417 Score: 189
Period size: 46 Copynumber: 2.7 Consensus size: 46
69100282 TGGTTGAGCA
* *
69100292 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* **
69100338 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
69100384 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69100418 GGGGCGGGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:69103463 original size:23 final size:23
Alignment explanation
Indices: 69103433--69103521 Score: 85
Period size: 23 Copynumber: 3.9 Consensus size: 23
69103423 ACTTTACTAT
*
69103433 TTTCAGCTCATTGGAGCTTACCG
1 TTTCAGCTCATTAGAGCTTACCG
* **
69103456 TTTCAGCT-AGTATGAGCTTAGTG
1 TTTCAGCTCATTA-GAGCTTACCG
69103479 TTT-AGCTCGA-TAGAGCTTACCG
1 TTTCAGCTC-ATTAGAGCTTACCG
* *
69103501 TTTTAGCTCAATAGAGCTTAC
1 TTTCAGCTCATTAGAGCTTAC
69103522 TGTTCATTAG
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
22 18 0.33
23 36 0.65
24 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (23 bp):
TTTCAGCTCATTAGAGCTTACCG
Found at i:69103547 original size:26 final size:25
Alignment explanation
Indices: 69103480--69103554 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 25
69103470 AGCTTAGTGT
* * *
69103480 TTAGCTCGATAGAGCTTACCGTT--
1 TTAGCTCAAAAGAGCTTACTGTTCA
*
69103503 TTAGCTCAATAGAGCTTACTGTTCA
1 TTAGCTCAAAAGAGCTTACTGTTCA
*
69103528 TTAGCTCAAGAAGAGCTTACTGATCA
1 TTAGCTCAA-AAGAGCTTACTGTTCA
69103554 T
1 T
69103555 GGCTCGAAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
23 21 0.47
25 9 0.20
26 15 0.33
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (25 bp):
TTAGCTCAAAAGAGCTTACTGTTCA
Found at i:69103746 original size:20 final size:20
Alignment explanation
Indices: 69103723--69103782 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
69103713 TGTTATTATT
69103723 GATGAACTACTATTTATACG
1 GATGAACTACTATTTATACG
* *
69103743 GATGAACTACTAGTTATATG
1 GATGAACTACTATTTATACG
* *
69103763 AATGAATTAC-AGTTTATACG
1 GATGAACTACTA-TTTATACG
69103783 AGTAGAAATG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (20 bp):
GATGAACTACTATTTATACG
Found at i:69103768 original size:40 final size:40
Alignment explanation
Indices: 69103694--69103782 Score: 103
Period size: 40 Copynumber: 2.2 Consensus size: 40
69103684 TAAGATATGT
* *
69103694 GTTTATATGGATGAATTACTGTTATTATTGATGAACTACTA
1 GTTTATACGGATGAACTACTGTTATTATTGATGAACTAC-A
*
69103735 -TTTATACGGATGAACTACTAGTTA-TA-TGAATGAATTACA
1 GTTTATACGGATGAACTACT-GTTATTATTG-ATGAACTACA
69103774 GTTTATACG
1 GTTTATACG
69103783 AGTAGAAATG
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
39 3 0.07
40 35 0.83
41 4 0.10
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (40 bp):
GTTTATACGGATGAACTACTGTTATTATTGATGAACTACA
Found at i:69122322 original size:40 final size:40
Alignment explanation
Indices: 69122278--69122408 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
69122268 AGACTAAGAT
69122278 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
69122318 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* *
69122358 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
69122398 CCGAAGGCATT
1 CCGAAGGCATT
69122409 GTATGAGTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 81 0.99
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
Found at i:69122429 original size:39 final size:38
Alignment explanation
Indices: 69122278--69122445 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 38
69122268 AGACTAAGAT
* *
69122278 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCA-TTGTGCGAGTTACTAA-ACCGGGTTAAGTC
* * *
69122318 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAA-ACCGGGTTAAGTC
*
69122358 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATT-GTGCGAGTTACT-AAA-CCGGGTTAAGTC
** * *
69122398 CCGAAGGCATTGTATGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTA-AACCGGGTTAAGTC
69122437 CCGAAGGCA
1 CCGAAGGCA
69122446 CTTGAACGAG
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
39 31 0.28
40 78 0.71
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGAAGGCATTGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:69125141 original size:40 final size:40
Alignment explanation
Indices: 69124925--69125129 Score: 302
Period size: 40 Copynumber: 5.1 Consensus size: 40
69124915 AAAAGATTAC
* *
69124925 GAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTACCGAA
1 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
*
69124965 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAG
1 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
*
69125005 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAG
1 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
* **
69125045 GAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAA
1 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
* * * * *
69125085 GAGCATTCGTGCTGGTGTTATATCTGGGCTAGGTCTCGAA
1 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
69125125 GAGCA
1 GAGCA
69125130 ATCATGCTGG
Statistics
Matches: 150, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 150 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
Found at i:69128936 original size:47 final size:47
Alignment explanation
Indices: 69128884--69129197 Score: 538
Period size: 47 Copynumber: 6.7 Consensus size: 47
69128874 GCTAATGCGA
*
69128884 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
69128931 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
69128978 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
69129025 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
69129072 TGATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* * * * * *
69129119 TGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* *
69129166 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
69129198 TCCCGGAGGG
Statistics
Matches: 254, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 254 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:69129372 original size:37 final size:37
Alignment explanation
Indices: 69129319--69129394 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
69129309 AGCTCTAAAT
* * *
69129319 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
*
69129356 ACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
69129393 AC
1 AC
69129395 TTCGTAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
Found at i:69131578 original size:50 final size:49
Alignment explanation
Indices: 69131519--69131742 Score: 209
Period size: 50 Copynumber: 4.5 Consensus size: 49
69131509 AATACACGTC
* * *
69131519 TGTAGTACTAAGTGCAGGCTACTACGTGTACCATATTGTTAAGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCACATG
* * * * *
69131569 TGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-A-TGACTTCGATCACGTT
1 TGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG--TT-GGTCACATG
* * * * *
69131620 TGTAGTACTAAGTGCAGACTACTACGTGTATCAGATGGTGAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGT-TGGTCACATG
* * ** *
69131670 TTTAGTTCTAAGTGCAGGCTACTACGTGTACTGGATTGTTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCACATG
*
69131719 TGTAGTACTAAGTACAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
69131743 TGCGTATCAG
Statistics
Matches: 139, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
49 30 0.22
50 72 0.52
51 36 0.26
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCACATG
Found at i:69131701 original size:101 final size:101
Alignment explanation
Indices: 69131513--69131701 Score: 261
Period size: 101 Copynumber: 1.9 Consensus size: 101
69131503 ATTGTGAATA
* * * * *
69131513 CACGTCTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATTGTTAAGTCGCATGTGTAGTACT
1 CACGTCTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTGAAGTCACATGTGTAGTACT
*
69131578 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
66 AAGTGCAGGCTACTACGCGTACTCAATGACTTCGAT
* * * * * *
69131614 CACGTTTGTAGTACTAAGTGCAGACTACTACGTGTATCAGATGGTGAGGTCACGTGTTTAGTTCT
1 CACGTCTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTGAAGTCACATGTGTAGTACT
*
69131679 AAGTGCAGGCTACTACGTGTACT
66 AAGTGCAGGCTACTACGCGTACT
69131702 GGATTGTTGG
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (101 bp):
CACGTCTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTGAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACTCAATGACTTCGAT
Found at i:69139109 original size:31 final size:31
Alignment explanation
Indices: 69139071--69139149 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
69139061 TTTAACAGTT
69139071 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
69139102 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
69139133 ATTGGGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
69139150 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:69139219 original size:42 final size:42
Alignment explanation
Indices: 69139173--69139264 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
69139163 TGGCCCTTAG
* ** *
69139173 GCCCATTTCAATATCA-CATGTAATGTCAATGTATGTATGCAA
1 GCCCATTTCAATAT-AGCATGAAATACCAATGAATGTATGCAA
69139215 GCCCATTTCAATATAGCATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATAGCATGAAATACCAATGAATGTATGCAA
69139257 GCCCATTT
1 GCCCATTT
69139265 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 44 0.98
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATAGCATGAAATACCAATGAATGTATGCAA
Found at i:69139456 original size:26 final size:26
Alignment explanation
Indices: 69139410--69139559 Score: 203
Period size: 26 Copynumber: 5.8 Consensus size: 26
69139400 CTCTTTTGAT
*
69139410 AACTGGGGCA-AATCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
69139435 AACTGGGGTATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
69139461 AACTGGAGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
69139487 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
69139513 AATTAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
69139539 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
69139560 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 17, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
25 9 0.08
26 98 0.92
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:69139480 original size:52 final size:51
Alignment explanation
Indices: 69139410--69139559 Score: 230
Period size: 52 Copynumber: 2.9 Consensus size: 51
69139400 CTCTTTTGAT
* *
69139410 AACTGGGGCA-AATCCCTTTTCAATAAACTGGGGTATAAGCCCTTTTCGGTA
1 AACT-GGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
*
69139461 AACTGGAGCATAAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGG-GCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
*
69139513 AATTAGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AACT-GGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
69139560 GCACTTCCTC
Statistics
Matches: 91, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
50 2 0.02
51 7 0.08
52 80 0.88
53 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (51 bp):
AACTGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:69140272 original size:26 final size:27
Alignment explanation
Indices: 69140215--69140300 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
69140205 TATTCGTCAT
* * *
69140215 TTTACCATATAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
69140242 TTTACCCTACAGGGGCTTTA-GGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
* *
69140268 TTTACCTTACAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
69140295 TTTACC
1 TTTACC
69140301 TAATAGGGGT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 24 0.46
27 27 0.52
28 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:69140308 original size:27 final size:27
Alignment explanation
Indices: 69140232--69140309 Score: 97
Period size: 26 Copynumber: 2.9 Consensus size: 27
69140222 TATAGGGGTA
*
69140232 TTACGGTCACTTTACCCT-ACAGGGGCT
1 TTACGGTCTCTTTA-CCTAACAGGGGCT
*
69140259 TTA-GGTCTCTTTACCTTACAGGGGCT
1 TTACGGTCTCTTTACCTAACAGGGGCT
* *
69140285 TTACGGTCTTTTTACCTAATAGGGG
1 TTACGGTCTCTTTACCTAACAGGGG
69140310 TATTTTAGCC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
25 3 0.07
26 21 0.47
27 21 0.47
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
TTACGGTCTCTTTACCTAACAGGGGCT
Found at i:69140384 original size:27 final size:27
Alignment explanation
Indices: 69140331--69140676 Score: 203
Period size: 27 Copynumber: 12.8 Consensus size: 27
69140321 TTTCATCCTA
* * * *
69140331 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* **
69140358 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * * *
69140385 CAATGGTATTTCCA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-C
** * * ** *
69140414 CAAGGGTATTTCGGGAACTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * * *
69140441 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
** * *
69140468 TGAGGGTATTTCAGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* *
69140495 C-AGTAGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTAGTAATTTTACAAAC
* * * *
69140522 TATGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
** *
69140549 TGAGGGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* *
69140576 CAAGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * ** *
69140602 CTAGGGTATTTTGGTAATTTTACTGAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * **
69140629 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
**
69140656 TGAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
69140677 GTAAATCGAG
Statistics
Matches: 251, Mismatches: 61, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
26 24 0.10
27 198 0.79
28 17 0.07
29 12 0.05
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAC
Found at i:69140540 original size:81 final size:80
Alignment explanation
Indices: 69140444--69140648 Score: 295
Period size: 81 Copynumber: 2.5 Consensus size: 80
69140434 TGTAAATTAG
*
69140444 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACC-AGTAGTATTTTG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAAG-AGTATTTTA
*
69140508 GTAATTTTACAAACTA
65 GCAATTTTACAAACTA
* *
69140524 TGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTA
1 -GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAAGAGTATTTTA
*
69140589 GCAATTTTACAGACTA
65 GCAATTTTACAAACTA
** * **
69140605 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTT
69140649 TGTAAACTGA
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
80 39 0.35
81 72 0.64
82 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAAGAGTATTTTAG
CAATTTTACAAACTA
Found at i:69140681 original size:27 final size:27
Alignment explanation
Indices: 69140444--69140676 Score: 240
Period size: 27 Copynumber: 8.7 Consensus size: 27
69140434 TGTAAATTAG
*
69140444 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTGA
** * *
69140471 GGGTATTTCAGTAATTTCACAAAC-CA
1 GGGTATTTTGGTAATTTTACAAACTGA
*
69140497 GTAGTATTTTGGTAATTTTACAAACT-A
1 G-GGTATTTTGGTAATTTTACAAACTGA
*
69140524 TGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAACTGA
** **
69140552 GGGTATTTCAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTGA
* * *
69140579 GGGTATTTTAGCAATTTTACAGACT-A
1 GGGTATTTTGGTAATTTTACAAACTGA
**
69140605 GGGTATTTTGGTAATTTTACTGA-TCGA
1 GGGTATTTTGGTAATTTTACAAACT-GA
**
69140632 GGGTATTTTGGTAATTTTGTAAACTGA
1 GGGTATTTTGGTAATTTTACAAACTGA
*
69140659 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
69140677 GTAAATCGAG
Statistics
Matches: 171, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.01
26 23 0.13
27 144 0.84
28 3 0.02
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTGA
Found at i:69140687 original size:27 final size:27
Alignment explanation
Indices: 69140444--69140744 Score: 189
Period size: 27 Copynumber: 11.2 Consensus size: 27
69140434 TGTAAATTAG
* * *
69140444 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTAGTAATTTTATAAATCGA
* * * *
69140471 GGGTATTTCAGTAATTTCACAAA-CCA
1 GGGTATTTTAGTAATTTTATAAATCGA
* * * *
69140497 GTAGTATTTTGGTAATTTTACAAA-CTA
1 G-GGTATTTTAGTAATTTTATAAATCGA
* * *
69140524 TGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTAGTAATTTTATAAATCGA
* * * *
69140552 GGGTATTTCAGTAATTTTACAAACCAA
1 GGGTATTTTAGTAATTTTATAAATCGA
* * * *
69140579 GGGTATTTTAGCAATTTTACAGA-CTA
1 GGGTATTTTAGTAATTTTATAAATCGA
* *
69140605 GGGTATTTTGGTAATTTTACT-GATCGA
1 GGGTATTTTAGTAATTTTA-TAAATCGA
* *
69140632 GGGTATTTTGGTAATTTTGTAAA-CTGA
1 GGGTATTTTAGTAATTTTATAAATC-GA
*
69140659 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
* *** * * *
69140686 GGTTAAAATAGTAATTCTGTAAATCAA
1 GGGTATTTTAGTAATTTTATAAATCGA
*** *
69140713 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
69140740 GGGTA
1 GGGTA
69140745 AAACGGTAAT
Statistics
Matches: 228, Mismatches: 38, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
26 25 0.11
27 200 0.88
28 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTATAAATCGA
Found at i:69141642 original size:45 final size:45
Alignment explanation
Indices: 69141587--69141687 Score: 157
Period size: 45 Copynumber: 2.2 Consensus size: 45
69141577 GCTAGGATCG
*
69141587 AGGCCCGAATAGTATCTCACCGGCATTATAGCCTACTAGGCCCAA
1 AGGCCCGAATAGTATCTCACCGGCATAATAGCCTACTAGGCCCAA
* * *
69141632 AGGCCCGAATAGTGTCTCACCGGCATAATAGCCTGCTAGGCTCAA
1 AGGCCCGAATAGTATCTCACCGGCATAATAGCCTACTAGGCCCAA
*
69141677 AGGCTCGAATA
1 AGGCCCGAATA
69141688 TAATACCAGC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (45 bp):
AGGCCCGAATAGTATCTCACCGGCATAATAGCCTACTAGGCCCAA
Found at i:69141736 original size:38 final size:38
Alignment explanation
Indices: 69141685--69141915 Score: 302
Period size: 38 Copynumber: 6.1 Consensus size: 38
69141675 AAAGGCTCGA
* * *
69141685 ATATAATACCAGCACTAGGCTTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
69141723 ATATAATACCAGCACGAAGCTTGCGGGAATTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* **
69141761 ATATATTACCAGCATAAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
69141799 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
69141837 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * ** *
69141875 ATATAATTCCAGCA-TATAGCCTGCGGTCTTTAAGCCGG
1 ATATAATACCAGCACGA-AGCCTGCGGGATTTAACCCGG
69141913 ATA
1 ATA
69141916 CAAATATCAT
Statistics
Matches: 174, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
37 1 0.01
38 173 0.99
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:69141887 original size:114 final size:114
Alignment explanation
Indices: 69141685--69141915 Score: 338
Period size: 114 Copynumber: 2.0 Consensus size: 114
69141675 AAAGGCTCGA
* * * *
69141685 ATATAATACCAGCACTAGGCTTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCTTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
69141750 AATTAACCCGGATATATTACCAGCATAAAGCCTGCGGGATTTAACCCGG
66 AATTAACCCGGATATATTACCAGCATAAAGCCTGCGGGATTTAACCCGG
* * *
69141799 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
* * ** *
69141864 ATTTAACCCGGATATAATT-CCAGCATATAGCCTGCGGTCTTTAAGCCGG
66 AATTAACCCGGATAT-ATTACCAGCATAAAGCCTGCGGGATTTAACCCGG
69141913 ATA
1 ATA
69141916 CAAATATCAT
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
114 101 0.97
115 3 0.03
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (114 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
AATTAACCCGGATATATTACCAGCATAAAGCCTGCGGGATTTAACCCGG
Found at i:69142293 original size:43 final size:44
Alignment explanation
Indices: 69142185--69142319 Score: 184
Period size: 43 Copynumber: 3.1 Consensus size: 44
69142175 ACATAACATT
*
69142185 TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAA-GCCCGAAT-A
* *
69142231 T-ATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCCG-ATA
1 TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGCCCGAATA
* * *
69142273 TCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATA
1 TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGCCCGAATA
69142317 TCA
1 TCA
69142320 CATTTCGATA
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
42 2 0.03
43 35 0.44
44 10 0.13
45 31 0.39
46 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (44 bp):
TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGCCCGAATA
Found at i:69149392 original size:16 final size:16
Alignment explanation
Indices: 69149371--69149403 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
69149361 TGGTAAATCA
*
69149371 TGAAATGCTGAAAAGC
1 TGAAATGCTAAAAAGC
69149387 TGAAATGCTAAAAAGC
1 TGAAATGCTAAAAAGC
69149403 T
1 T
69149404 AAAAGTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.21
Consensus pattern (16 bp):
TGAAATGCTAAAAAGC
Found at i:69149660 original size:29 final size:29
Alignment explanation
Indices: 69149618--69149742 Score: 189
Period size: 29 Copynumber: 4.3 Consensus size: 29
69149608 GAAAGCATCT
*
69149618 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATCGGCC
69149647 ATATGAATGTGATTTGGGCCTAATCGGCC
1 ATATGAATGTGATTTGGGCCTAATCGGCC
69149676 ATATGAATGTGATTTGGGCCTAATCGGCC
1 ATATGAATGTGATTTGGGCCTAATCGGCC
* * * *
69149705 ATATGAATGAGA-TTAGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATCGGCC
*
69149733 ATATGCATGT
1 ATATGAATGT
69149743 ATGTAGACTT
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 21 0.24
29 68 0.76
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATCGGCC
Found at i:69156145 original size:40 final size:40
Alignment explanation
Indices: 69156090--69156224 Score: 252
Period size: 40 Copynumber: 3.4 Consensus size: 40
69156080 TATGTGCATA
69156090 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
69156130 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
69156170 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
69156210 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
69156225 GTTACATCTG
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:69156248 original size:80 final size:80
Alignment explanation
Indices: 69156090--69156248 Score: 219
Period size: 80 Copynumber: 2.0 Consensus size: 80
69156080 TATGTGCATA
*
69156090 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCG
* ** *
69156155 GGTTAAGTCCCGAAG
66 AGCCAAATCCCGAAG
* * * * *
69156170 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTACATCTG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCG
*
69156235 AGCCAAATTCCGAA
66 AGCCAAATCCCGAA
69156249 AGTATTTATG
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCG
AGCCAAATCCCGAAG
Found at i:69165110 original size:29 final size:29
Alignment explanation
Indices: 69165071--69165149 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
69165061 CTTAATAATT
*
69165071 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
69165101 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
69165130 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69165150 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:69177366 original size:13 final size:13
Alignment explanation
Indices: 69177348--69177372 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69177338 CCGAAACTAG
69177348 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
69177361 AAAGAAAAAAAA
1 AAAGAAAAAAAA
69177373 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:69178548 original size:39 final size:40
Alignment explanation
Indices: 69178448--69178671 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
69178438 TTGAATGATG
* *
69178448 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
69178487 ACCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
69178528 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
69178567 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
69178606 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
69178645 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
69178672 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
39 75 0.46
40 74 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:69178596 original size:78 final size:80
Alignment explanation
Indices: 69178448--69178671 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
69178438 TTGAATGATG
* * * * *
69178448 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATACCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
69178511 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
69178528 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
69178589 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
69178606 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
69178671 G
66 G
69178672 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 16
0.83 0.07 0.11
Matches are distributed among these distances:
78 37 0.29
79 54 0.43
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:69178685 original size:40 final size:39
Alignment explanation
Indices: 69178449--69178671 Score: 226
Period size: 40 Copynumber: 5.6 Consensus size: 39
69178439 TGAATGATGT
* * *
69178449 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* *
69178489 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
69178529 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-A
69178568 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* *
69178606 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAA
*
69178647 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
69178672 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 11, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
39 74 0.45
40 77 0.47
41 12 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:69178693 original size:79 final size:79
Alignment explanation
Indices: 69178448--69178704 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
69178438 TTGAATGATG
* * * * *
69178448 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATACCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
69178510 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
69178528 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
69178592 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
69178606 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
69178669 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
69178686 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
69178705 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 37 0.24
79 67 0.44
80 47 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:69181415 original size:16 final size:16
Alignment explanation
Indices: 69181394--69181436 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
69181384 GTAGATCGGC
* *
69181394 AAAAGCCGAAATGCCG
1 AAAAGCTGAAATGCCA
*
69181410 AAAAGCTAAAATGCCA
1 AAAAGCTGAAATGCCA
69181426 AAAAGCTGAAA
1 AAAAGCTGAAA
69181437 GTTTGGCTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (16 bp):
AAAAGCTGAAATGCCA
Found at i:69182925 original size:19 final size:18
Alignment explanation
Indices: 69182903--69182938 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
69182893 GAATTGGCCT
69182903 AATGGGCTAGAATGGGCTA
1 AATGGGCTAG-ATGGGCTA
*
69182922 AATGGGCTCGATGGGCT
1 AATGGGCTAGATGGGCT
69182939 GTTGCGCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.25, C:0.14, G:0.39, T:0.22
Consensus pattern (18 bp):
AATGGGCTAGATGGGCTA
Found at i:69183048 original size:29 final size:27
Alignment explanation
Indices: 69183007--69183123 Score: 85
Period size: 28 Copynumber: 4.1 Consensus size: 27
69182997 GTGAGCATGA
* *
69183007 ATATAATGTGATTAAGGCCGGATGGGCC
1 ATATAATGAGATT-AGGCCGAATGGGCC
*
69183035 ATATAAATGAGATTAGGCCTAATGGGCC
1 ATAT-AATGAGATTAGGCCGAATGGGCC
* * * *
69183063 ATATGAATGTGAATTGGGCCTG-ATGAGCT
1 ATAT-AATGAG-ATTAGGCC-GAATGGGCC
*
69183092 ATATGAATGAGATTGGGCC-AAGTGGGCC
1 ATAT-AATGAGATTAGGCCGAA-TGGGCC
69183120 ATAT
1 ATAT
69183124 GCATGTATGT
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
27 1 0.01
28 41 0.57
29 30 0.42
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (27 bp):
ATATAATGAGATTAGGCCGAATGGGCC
Found at i:69183052 original size:28 final size:28
Alignment explanation
Indices: 69183028--69183124 Score: 106
Period size: 28 Copynumber: 3.4 Consensus size: 28
69183018 TTAAGGCCGG
*
69183028 ATGGGCCATATAAATGAGATTAGGCCTA
1 ATGGGCCATATGAATGAGATTAGGCCTA
* * *
69183056 ATGGGCCATATGAATGTGAATTGGGCCTG
1 ATGGGCCATATGAATGAG-ATTAGGCCTA
* * *
69183085 ATGAGCTATATGAATGAGATTGGGCC-A
1 ATGGGCCATATGAATGAGATTAGGCCTA
69183112 AGTGGGCCATATG
1 A-TGGGCCATATG
69183125 CATGTATGTA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 1 0.02
28 33 0.58
29 23 0.40
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (28 bp):
ATGGGCCATATGAATGAGATTAGGCCTA
Found at i:69186999 original size:15 final size:16
Alignment explanation
Indices: 69186970--69186999 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69186960 CAAAAGTGTC
69186970 GAAATGCCGAAAAACT
1 GAAATGCCGAAAAACT
69186986 GAAATGCC-AAAAAC
1 GAAATGCCGAAAAAC
69187000 CCGAAAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.53, C:0.20, G:0.17, T:0.10
Consensus pattern (16 bp):
GAAATGCCGAAAAACT
Found at i:69188594 original size:69 final size:70
Alignment explanation
Indices: 69188462--69188594 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
69188452 TAGTTTATTA
* * * * * *
69188462 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATCATTGGCTCTCCAAATTAGGACAAAATCATGGTA
69188527 CTTAG
66 CTTAG
69188532 CTAATTAATATGCTGCTGTAATACT-TAAATCATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATCATTGGCTCTCCAAATTAGGACAAAATCATGGT
69188595 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 34 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATCATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:69190032 original size:47 final size:47
Alignment explanation
Indices: 69189978--69190621 Score: 1056
Period size: 47 Copynumber: 13.6 Consensus size: 47
69189968 TATTTGAATA
69189978 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69190025 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TGTGATG
* *
69190072 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69190119 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69190168 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69190215 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69190264 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69190311 AATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69190358 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69190405 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69190454 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69190501 AATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
69190548 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69190595 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69190622 TCCCGAAGGG
Statistics
Matches: 562, Mismatches: 27, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 426 0.76
48 1 0.00
49 134 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69190174 original size:143 final size:141
Alignment explanation
Indices: 69189978--69190621 Score: 1056
Period size: 143 Copynumber: 4.5 Consensus size: 141
69189968 TATTTGAATA
69189978 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
69190043 TGTGATAAGGCCGAATGGCC-ATTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 TGTGATAAGGCCGAATGGCCGA-TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
69190107 GCCAATGTGATG
130 GCCAATGTGATG
*
69190119 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
69190184 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
*
69190249 ATGGCCGATGTGATG
127 ATGGCCAATGTGATG
* *
69190264 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTACATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
69190329 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
69190394 CCAATGTGATG
131 CCAATGTGATG
69190405 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
69190470 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
69190535 GGCCGATGTGATG
129 GGCCAATGTGATG
* * * * * * *
69190548 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
69190613 TGTGATAAG
66 TGTGATAAG
69190622 TCCCGAAGGG
Statistics
Matches: 474, Mismatches: 22, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
141 112 0.24
143 316 0.67
144 1 0.00
145 45 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:69190332 original size:190 final size:190
Alignment explanation
Indices: 69189978--69190621 Score: 1109
Period size: 190 Copynumber: 3.4 Consensus size: 190
69189968 TATTTGAATA
* *
69189978 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
69190041 TATGTGATAAGGCCGAATGGCC-ATTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
66 TATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* *
69190105 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATG
130 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69190168 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
69190233 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
69190298 AGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69190358 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
69190423 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
69190488 GGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
69190548 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
69190612 -ATGTGATAAG
66 TATGTGATAAG
69190622 TCCCGAAGGG
Statistics
Matches: 436, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
188 10 0.02
189 1 0.00
190 336 0.77
192 88 0.20
193 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (190 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69191641 original size:28 final size:29
Alignment explanation
Indices: 69191580--69191647 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 29
69191570 GGGGTGTTAC
* *
69191580 ATGGGCTATATGAATGTGAATTGGGCCTA
1 ATGGGCTATATAAATGAGAATTGGGCCTA
69191609 ATGGGCTATATAAATGAG-ATTGGGCC-A
1 ATGGGCTATATAAATGAGAATTGGGCCTA
*
69191636 AGTGGGCCATAT
1 A-TGGGCTATAT
69191648 GCATGTATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.06
28 17 0.49
29 16 0.46
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (29 bp):
ATGGGCTATATAAATGAGAATTGGGCCTA
Found at i:69192461 original size:47 final size:47
Alignment explanation
Indices: 69192407--69193068 Score: 935
Period size: 47 Copynumber: 14.6 Consensus size: 47
69192397 TATTTGAATA
69192407 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69192454 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
69192501 AATGTGAAAGTGTATATATGTTATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69192548 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69192597 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69192644 AATGTGAAAGTG--TATA--T-ATAA-G-C-AAT----GATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69192679 AATGTGAAA--G--TATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69192721 AATGTGAAAGTGTA-ATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69192767 AATGTGAAAGTGTATATATGTGATAAGGCC-AATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69192812 AATGTGAAAGTGTATATATGT-ATAAGG-C-AATGG-CGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69192855 AATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69192901 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
69192948 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
69192995 GATGTGAAAGTGTATAAATGTGAT-AGAGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATG
* *
69193042 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69193069 TCCCGAAGGG
Statistics
Matches: 574, Mismatches: 17, Indels: 47
0.90 0.03 0.07
Matches are distributed among these distances:
33 5 0.01
35 18 0.03
36 4 0.01
37 1 0.00
38 1 0.00
39 6 0.01
40 1 0.00
41 1 0.00
42 23 0.04
43 36 0.06
44 14 0.02
45 57 0.10
46 72 0.13
47 289 0.50
48 2 0.00
49 44 0.08
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69192697 original size:143 final size:139
Alignment explanation
Indices: 69192407--69192662 Score: 440
Period size: 143 Copynumber: 1.8 Consensus size: 139
69192397 TATTTGAATA
69192407 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
** *
69192472 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTTATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGCAATAAGGACGAATGG
*
69192537 CCAATGTGAT
131 -CAAAGTGAT
69192547 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 -AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
69192612 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
63 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
69192663 AAGCAATGAT
Statistics
Matches: 113, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
141 12 0.11
143 101 0.89
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (139 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGCAATAAGGACGAATGG
CAAAGTGAT
Found at i:69194539 original size:40 final size:40
Alignment explanation
Indices: 69194484--69195040 Score: 830
Period size: 40 Copynumber: 14.0 Consensus size: 40
69194474 TTGAGAGTGA
*
69194484 TATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
69194524 TATATCCGGGCTAAGTCCCGAAGAGCATTCGAGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
69194564 TATATCCGGGCTAAGTCCCGAGGATCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
69194604 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
69194644 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
69194684 TATATCCGGGCTAAGTCCCGAAGAGCATTCGAGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
69194724 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
69194764 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
69194804 TATATCCGGGCTAAGTCCCGAAGAGCATTCGAGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
69194844 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
69194884 TATATCAGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
69194924 TATATCCGGGCTAAGTCCCGAAGAGCATTCGAGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
69194964 TATATCTGGGCTAGGTCCCGAAGAGCATTCGAGTTGGTG-
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
69195003 T-TATCCGGGCTAAGTCTCGAAGAGCATTCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
69195041 ATGTGTATTC
Statistics
Matches: 468, Mismatches: 49, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
38 31 0.07
39 1 0.00
40 436 0.93
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:69197469 original size:69 final size:70
Alignment explanation
Indices: 69197337--69197469 Score: 196
Period size: 69 Copynumber: 1.9 Consensus size: 70
69197327 TAGTTTATTA
* * * * * * *
69197337 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTATAATACTGTAAATCATTGGCTCTCCAAATTAGGACAAAATCATGGTA
69197402 CTTAG
66 CTTAG
69197407 CTAATTAATATGCTGCTATAATACT-TAAATCATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTATAATACTGTAAATCATTGGCTCTCCAAATTAGGACAAAATCATGGT
69197470 GTTATGTGCT
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
69 34 0.61
70 22 0.39
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTATAATACTGTAAATCATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:69198910 original size:47 final size:47
Alignment explanation
Indices: 69198856--69199499 Score: 1063
Period size: 47 Copynumber: 13.6 Consensus size: 47
69198846 TATTTGAATA
69198856 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69198903 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69198950 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69198997 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69199046 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69199093 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69199142 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69199189 AATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69199236 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69199283 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69199332 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69199379 AATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
69199426 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69199473 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69199500 TCCCGAAGGG
Statistics
Matches: 563, Mismatches: 28, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 429 0.76
49 134 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69198948 original size:22 final size:22
Alignment explanation
Indices: 69198920--69198995 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
69198910 AAGTGTATAT
69198920 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
69198942 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
69198966 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
69198989 ATGTGAT
1 ATGTGAT
69198996 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:69199052 original size:143 final size:141
Alignment explanation
Indices: 69198856--69199499 Score: 1063
Period size: 143 Copynumber: 4.5 Consensus size: 141
69198846 TATTTGAATA
69198856 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
69198921 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
69198986 CCAATGTGATG
131 CCAATGTGATG
*
69198997 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
69199062 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
*
69199127 ATGGCCGATGTGATG
127 ATGGCCAATGTGATG
* *
69199142 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTACATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
69199207 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
69199272 CCAATGTGATG
131 CCAATGTGATG
69199283 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
69199348 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
69199413 GGCCGATGTGATG
129 GGCCAATGTGATG
* * * * * * *
69199426 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
69199491 TGTGATAAG
66 TGTGATAAG
69199500 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 22, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
141 112 0.24
143 318 0.67
145 45 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:69199210 original size:190 final size:190
Alignment explanation
Indices: 69198856--69199499 Score: 1116
Period size: 190 Copynumber: 3.4 Consensus size: 190
69198846 TATTTGAATA
* *
69198856 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
69198919 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
69198984 GGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69199046 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
69199111 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
69199176 AGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69199236 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
69199301 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
69199366 GGCCGATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
69199426 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
69199490 -ATGTGATAAG
66 TATGTGATAAG
69199500 TCCCGAAGGG
Statistics
Matches: 436, Mismatches: 16, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
188 10 0.02
189 1 0.00
190 336 0.77
192 89 0.20
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (190 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69200519 original size:28 final size:29
Alignment explanation
Indices: 69200458--69200525 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 29
69200448 GGGGTGTTAC
* *
69200458 ATGGGCTATATGAATGTGAATTGGGCCTA
1 ATGGGCTATATAAATGAGAATTGGGCCTA
69200487 ATGGGCTATATAAATGAG-ATTGGGCC-A
1 ATGGGCTATATAAATGAGAATTGGGCCTA
*
69200514 AGTGGGCCATAT
1 A-TGGGCTATAT
69200526 GCATGTATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.06
28 17 0.49
29 16 0.46
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (29 bp):
ATGGGCTATATAAATGAGAATTGGGCCTA
Found at i:69201639 original size:18 final size:19
Alignment explanation
Indices: 69201603--69201640 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
69201593 TGAATTGGCC
69201603 AAATGGGCCAGAGTGGGCT
1 AAATGGGCCAGAGTGGGCT
*
69201622 AAATGGGCCCGA-TGGGCT
1 AAATGGGCCAGAGTGGGCT
69201640 A
1 A
69201641 TCGTGCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.26, C:0.18, G:0.39, T:0.16
Consensus pattern (19 bp):
AAATGGGCCAGAGTGGGCT
Found at i:69204442 original size:18 final size:20
Alignment explanation
Indices: 69204410--69204457 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 20
69204400 AATAGTGGGT
69204410 CAAGGTGGTGCTCAGC-CA-C
1 CAAGG-GGTGCTCAGCGCAGC
*
69204429 CAAGGGGTGGTCAGCTGCAGC
1 CAAGGGGTGCTCAGC-GCAGC
69204450 CAAGGGGT
1 CAAGGGGT
69204458 CGTGGGCAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 9 0.36
19 5 0.20
20 2 0.08
21 9 0.36
ACGTcount: A:0.21, C:0.25, G:0.40, T:0.15
Consensus pattern (20 bp):
CAAGGGGTGCTCAGCGCAGC
Found at i:69214386 original size:43 final size:43
Alignment explanation
Indices: 69214334--69214450 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
69214324 GGACATCAGT
* * *
69214334 ATCG-TATTTGATTTCACGAAAGACTC-TGTCTAG-GACAGTGGC
1 ATCGATATTTGATTACACGAAAGAC-CACGTCT-GCGACACTGGC
* * *
69214376 ATCGATATTTGATTACATGTAAGACCACGTCTGCGACCCTGGC
1 ATCGATATTTGATTACACGAAAGACCACGTCTGCGACACTGGC
* *
69214419 ATCGATATTTGATTACATGTAAGACCACGTCT
1 ATCGATATTTGATTACACGAAAGACCACGTCT
69214451 AGGACTTTGG
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 6 0.09
43 60 0.91
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (43 bp):
ATCGATATTTGATTACACGAAAGACCACGTCTGCGACACTGGC
Found at i:69214451 original size:86 final size:87
Alignment explanation
Indices: 69214250--69214455 Score: 215
Period size: 86 Copynumber: 2.4 Consensus size: 87
69214240 ATAGGATTCT
* * * * *
69214250 GATATGTGATTTCGTGTAAGACCACATCTAGGACATTGGCGTCGATTCTAGATTTACATGTAAGA
1 GATATTTGATTTCATGTAAGACCACGTCTAGGACAGTGGCATCGATTCTAGATTTACATGTAAGA
* * *
69214315 CCATGTCTGGGACATCAGTATC
66 CCACGTCTGCGACATCAGCATC
* * * *
69214337 G-TATTTGATTTCACGAAAGACTC-TGTCTAGGACAGTGGCATCGATAT-TTGA-TTACATGTAA
1 GATATTTGATTTCATGTAAGAC-CACGTCTAGGACAGTGGCATCGAT-TCTAGATTTACATGTAA
* *
69214398 GACCACGTCTGCGAC-CCTGGCATC
64 GACCACGTCTGCGACATC-AGCATC
*
69214422 GATATTTGATTACATGTAAGACCACGTCTAGGAC
1 GATATTTGATTTCATGTAAGACCACGTCTAGGAC
69214456 TTTGGCGTTG
Statistics
Matches: 96, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
84 1 0.01
85 29 0.30
86 63 0.66
87 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (87 bp):
GATATTTGATTTCATGTAAGACCACGTCTAGGACAGTGGCATCGATTCTAGATTTACATGTAAGA
CCACGTCTGCGACATCAGCATC
Found at i:69215568 original size:13 final size:13
Alignment explanation
Indices: 69215550--69215584 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
69215540 CAGTGTGAGG
69215550 CACACGGCCTGTT
1 CACACGGCCTGTT
69215563 CACACGGCCTGTT
1 CACACGGCCTGTT
69215576 CACACGGCC
1 CACACGGCC
69215585 GTGTGACATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.17, C:0.43, G:0.23, T:0.17
Consensus pattern (13 bp):
CACACGGCCTGTT
Found at i:69216953 original size:47 final size:47
Alignment explanation
Indices: 69216900--69217025 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
69216890 ACAATTGATA
* * * *
69216900 AGTACCTATACCACGGCTCGTAACCAAATCAAGGTAACTTATCCCGG
1 AGTACCTATACCATGGCCCGTAACCAAATCAAAGTAACTCATCCCGG
* * * *
69216947 AGTACCTATACCATGGCCCGTATCCAAATCAAAGTAACTCCTCTCTG
1 AGTACCTATACCATGGCCCGTAACCAAATCAAAGTAACTCATCCCGG
* *
69216994 AATACCTATAGCATGGCCCGTAACCAAATCAA
1 AGTACCTATACCATGGCCCGTAACCAAATCAA
69217026 TGTATTATTC
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.22
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGTAACCAAATCAAAGTAACTCATCCCGG
Found at i:69217607 original size:14 final size:15
Alignment explanation
Indices: 69217590--69217618 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69217580 ATTTCAACCC
69217590 TTCA-ATTTATAAAT
1 TTCACATTTATAAAT
69217604 TTCACATTTATAAAT
1 TTCACATTTATAAAT
69217619 CACTTTACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (15 bp):
TTCACATTTATAAAT
Found at i:69220198 original size:48 final size:48
Alignment explanation
Indices: 69220157--69220474 Score: 483
Period size: 48 Copynumber: 6.6 Consensus size: 48
69220147 ATATTAGTGT
* * * * *
69220157 CGATACCATGTCCCAAACATGGTCTTATACTGGCACACATATCAACGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC
***
69220205 CGATGCCATGTTTTAGACATGGTCTTACACTGGCTCACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC
* *
69220253 CGATGTCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC
* *
69220301 TGTTGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC
* * *
69220349 CGATGTCATGTCCCTGACATGGCCTTACACTGGCTCACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC
* *
69220397 CGATGCCATGTCCCAGACATGGTCTTGCACTGGCTCACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC
69220445 CGATGCCATGTCCCAGACATGGTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
69220475 GGGACCTTAT
Statistics
Matches: 244, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 244 1.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGC
Found at i:69239136 original size:17 final size:17
Alignment explanation
Indices: 69239109--69239146 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
69239099 CTAGTGCTCA
69239109 TTATCGTATT-ACACTT
1 TTATCGTATTAACACTT
*
69239125 TTATCTGTATTAACAGTT
1 TTATC-GTATTAACACTT
69239143 TTAT
1 TTAT
69239147 GCATCAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 5 0.26
18 9 0.47
ACGTcount: A:0.26, C:0.13, G:0.08, T:0.53
Consensus pattern (17 bp):
TTATCGTATTAACACTT
Found at i:69242304 original size:29 final size:29
Alignment explanation
Indices: 69242241--69242308 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
69242231 TAATCAACCG
69242241 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
69242270 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
69242299 CGCACACTTA
1 CGCACACTTA
69242309 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:69242422 original size:174 final size:174
Alignment explanation
Indices: 69242130--69242457 Score: 575
Period size: 174 Copynumber: 1.9 Consensus size: 174
69242120 AACTCAAGGT
* * *
69242130 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTATCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
69242195 GAAAATATATATTGGGTTCGTACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
69242260 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
69242304 ACTTACCTTTTCCGCTATCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTATCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
69242369 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCATGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
69242434 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
69242458 TGTACAATTT
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTATCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:69242450 original size:29 final size:30
Alignment explanation
Indices: 69242416--69242488 Score: 107
Period size: 29 Copynumber: 2.5 Consensus size: 30
69242406 AATCAACCAT
*
69242416 GCACACTTAGTGCCATGTAC-TTTAAACTC
1 GCACACTTAGTGCCATGTACATTTAAACCC
69242445 GCACACTTAGTG-C-TGTACAATTTAAACCC
1 GCACACTTAGTGCCATGTAC-ATTTAAACCC
69242474 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
69242489 ATCTCATGAC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 32 0.82
30 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (30 bp):
GCACACTTAGTGCCATGTACATTTAAACCC
Found at i:69250393 original size:29 final size:29
Alignment explanation
Indices: 69250330--69250397 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
69250320 TAATCAACCG
69250330 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
69250359 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
69250388 CGCACACTTA
1 CGCACACTTA
69250398 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:69250510 original size:174 final size:174
Alignment explanation
Indices: 69250219--69250546 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
69250209 AACTCAAGGT
* *
69250219 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
69250284 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
69250349 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
69250393 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
69250458 GAAAATATATATTGGGTTTGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
69250523 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
69250547 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:69250538 original size:29 final size:30
Alignment explanation
Indices: 69250499--69250577 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
69250489 CTTAATAATC
69250499 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
69250529 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
69250558 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69250578 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:69259802 original size:23 final size:23
Alignment explanation
Indices: 69259776--69259822 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
69259766 ATTAGAAAGA
*
69259776 AAGGCTCTAAGGGAATTTTTGTC
1 AAGGCCCTAAGGGAATTTTTGTC
*
69259799 AAGGCCCTAAGGGTATTTTTGTC
1 AAGGCCCTAAGGGAATTTTTGTC
69259822 A
1 A
69259823 TTTGGTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (23 bp):
AAGGCCCTAAGGGAATTTTTGTC
Found at i:69260851 original size:48 final size:47
Alignment explanation
Indices: 69260703--69260930 Score: 200
Period size: 48 Copynumber: 4.9 Consensus size: 47
69260693 GGTTATGTAC
* *
69260703 GATCCTATGTAAGACCATGTCTGGGACATGGCTTTGGCATC-AATAT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATAT
** * *
69260749 GTAATTTCATGTAAGACCATAG-CTGGG-C-T---ATCGGCATCGAAATGT
1 G--ATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCG-AATAT
* *
69260794 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACCTAC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-ATAT
* * ** *
69260842 GATCCCATGTAAGACTATGTTTGGGGTATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-ATAT
* ** *
69260890 GATCCCATGTAAGACCATATCCAGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
69260931 CTACCATATG
Statistics
Matches: 144, Mismatches: 26, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
42 1 0.01
43 27 0.19
44 1 0.01
45 6 0.04
46 2 0.01
47 2 0.01
48 104 0.72
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (47 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATAT
Found at i:69272783 original size:21 final size:21
Alignment explanation
Indices: 69272759--69272800 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
69272749 TGAAAATATC
*
69272759 TCAAAATAATGCACAGGTAAT
1 TCAAAATAATCCACAGGTAAT
*
69272780 TCAAAATAATCCACTGGTAAT
1 TCAAAATAATCCACAGGTAAT
69272801 CATACATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (21 bp):
TCAAAATAATCCACAGGTAAT
Found at i:69274456 original size:39 final size:40
Alignment explanation
Indices: 69274356--69274540 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
69274346 TCGAATGATG
* * *
69274356 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT
* * * * *
69274395 ATCTGGACTAAGATCTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
*
69274436 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
69274475 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
69274514 AACCGGGCCATGACCCGAAGGCATTTG
1 -TCCGGGCTAAGACCCGAAGGCATTTG
69274541 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:69274562 original size:79 final size:79
Alignment explanation
Indices: 69274411--69274573 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
69274401 ACTAAGATCT
* * **
69274411 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCCAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
69274476 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
69274490 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCCATGACCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCCAAG-CCCGAAGGCATTTGAACGAGTTA-CTA
* *
69274553 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
69274569 GAAGG
1 GAAGG
69274574 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 25 0.35
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCCAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:69281544 original size:40 final size:39
Alignment explanation
Indices: 69281460--69281644 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
69281450 TCGAATGATG
* * * *
69281460 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
69281500 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
69281540 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
69281579 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
69281620 -CCGGGCTATGACCTGAAGGCATTTG
1 TCCGGGCTAAGTCC-GAAGGCATTTG
69281645 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 37 0.30
40 77 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69281596 original size:79 final size:81
Alignment explanation
Indices: 69281460--69281644 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
69281450 TCGAATGATG
* *
69281460 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
69281524 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
69281539 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
69281601 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
69281619 ACCGGGCTATGACCTGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
69281645 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 32 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:69281666 original size:79 final size:79
Alignment explanation
Indices: 69281513--69281677 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
69281503 GGACTAAGAT
* **
69281513 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
69281578 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
69281592 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCTGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
69281655 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
69281671 CCGAAGG
1 CCGAAGG
69281678 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:69286512 original size:36 final size:36
Alignment explanation
Indices: 69286472--69286578 Score: 196
Period size: 36 Copynumber: 3.0 Consensus size: 36
69286462 TATGTAGGCC
*
69286472 CACATATCCCCTTAACTCCCTCCTACAATCCTTCCT
1 CACATATCTCCTTAACTCCCTCCTACAATCCTTCCT
*
69286508 CACATATCTCCTTAACTCCCTCCTGCAATCCTTCCT
1 CACATATCTCCTTAACTCCCTCCTACAATCCTTCCT
69286544 CACATATCTCCTTAACTCCCTCCTACAATCCTTCC
1 CACATATCTCCTTAACTCCCTCCTACAATCCTTCC
69286579 ATGACCAATT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 68 1.00
ACGTcount: A:0.21, C:0.46, G:0.01, T:0.32
Consensus pattern (36 bp):
CACATATCTCCTTAACTCCCTCCTACAATCCTTCCT
Found at i:69292707 original size:40 final size:40
Alignment explanation
Indices: 69292662--69292856 Score: 227
Period size: 40 Copynumber: 4.9 Consensus size: 40
69292652 GGATATAGCT
* * *
69292662 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
69292702 ACTCGCACAATTGCCTTTGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
69292742 ACTCACACAAATGCCTTCGGGACTTAGCCTGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
* *
69292782 ACTCGCACAAATGCCTTCGGGACTT-GCCCGG-AACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
69292821 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
69292857 CATCCAAATA
Statistics
Matches: 133, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 31 0.23
40 99 0.74
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:69296844 original size:30 final size:30
Alignment explanation
Indices: 69296810--69296868 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
69296800 CCTTAACTAA
69296810 AACTTTGGAAAAATTACAATTTTGCCCCTC
1 AACTTTGGAAAAATTACAATTTTGCCCCTC
* * * * *
69296840 AACTTTTGCATATTTACACTTTTGCCCCT
1 AACTTTGGAAAAATTACAATTTTGCCCCT
69296869 AGGCTCGGGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39
Consensus pattern (30 bp):
AACTTTGGAAAAATTACAATTTTGCCCCTC
Found at i:69304866 original size:23 final size:23
Alignment explanation
Indices: 69304840--69304889 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
69304830 ACCTCATGCA
69304840 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
69304863 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
69304886 ATGC
1 ATGC
69304890 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:69304981 original size:27 final size:26
Alignment explanation
Indices: 69304951--69305040 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 26
69304941 AGGTATTACA
* *
69304951 GTCATTTTACCCTACAGGGGCATTTCG
1 GTCATTTTACCCTA-AGGGGTATTTTG
*
69304978 GTCATTCTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTA-AGGGGTATTTTG
* * *
69305005 GTCTTTTTAGCCTAATAGGGTATTTTG
1 GTCATTTTACCCTAA-GGGGTATTTTG
69305032 GTCATTTTA
1 GTCATTTTA
69305041 TCACATAAGG
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.02
27 52 0.98
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (26 bp):
GTCATTTTACCCTAAGGGGTATTTTG
Found at i:69308664 original size:47 final size:47
Alignment explanation
Indices: 69308586--69309095 Score: 777
Period size: 47 Copynumber: 10.6 Consensus size: 47
69308576 CCCTTCGGGA
* * * * * *
69308586 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
69308633 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69308680 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69308727 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69308776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
69308823 CTTTTCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69308874 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69308921 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69308970 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69309017 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69309066 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
69309096 TCAAATATAC
Statistics
Matches: 427, Mismatches: 26, Indels: 20
0.90 0.05 0.04
Matches are distributed among these distances:
47 247 0.58
49 136 0.32
51 44 0.10
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69308783 original size:96 final size:96
Alignment explanation
Indices: 69308586--69309095 Score: 853
Period size: 96 Copynumber: 5.3 Consensus size: 96
69308576 CCCTTCGGGA
* * * * * * * *
69308586 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
69308649 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
69308680 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
69308745 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
69308776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTTCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAT
69308841 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATTGGCCATTCGGC
69308874 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
69308939 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
69308970 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
69309035 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
69309066 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
69309096 TCAAATATAC
Statistics
Matches: 399, Mismatches: 13, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
94 47 0.12
96 260 0.65
98 92 0.23
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:69308911 original size:194 final size:192
Alignment explanation
Indices: 69308586--69309095 Score: 853
Period size: 194 Copynumber: 2.7 Consensus size: 192
69308576 CCCTTCGGGA
* * * * * * * *
69308586 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
69308649 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
69308714 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69308776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTTTCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAT
69308841 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
* *
69308906 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
129 CATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69308970 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
69309035 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCAT
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCAT
69309096 TCAAATATAC
Statistics
Matches: 301, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
190 47 0.16
192 71 0.24
194 183 0.61
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (192 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69311418 original size:85 final size:85
Alignment explanation
Indices: 69311289--69311467 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
69311279 TATTTTATTG
*
69311289 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
69311354 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
69311374 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
69311439 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
69311459 CCCATGCTC
1 CCCATGCTC
69311468 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:69324512 original size:43 final size:43
Alignment explanation
Indices: 69324446--69324592 Score: 215
Period size: 43 Copynumber: 3.4 Consensus size: 43
69324436 ACATATCATT
* *
69324446 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* * *
69324489 TCATCGGCATGAAGCCTGATAGGCACGAAGGCCCAAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
69324532 TCACCGGTACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
69324575 TCACCGGCACT-AAGCCTG
1 TCACCGGCA-TGAAGCCTG
69324593 TAATAGCCCA
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 91 1.00
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.14
Consensus pattern (43 bp):
TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Done.