Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 214 of 316
Found at i:70063653 original size:19 final size:19
Alignment explanation
Indices: 70063629--70063672 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
70063619 TAGGGACTAA
* *
70063629 AATGAAAGTTGTAAAATTT
1 AATGAAAATTCTAAAATTT
70063648 AATGAAAAATTCTAAAATTT
1 AATG-AAAATTCTAAAATTT
70063668 -ATGAA
1 AATGAA
70063673 TGCATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 7 0.32
20 13 0.59
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.34
Consensus pattern (19 bp):
AATGAAAATTCTAAAATTT
Found at i:70065937 original size:29 final size:30
Alignment explanation
Indices: 70065904--70065961 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
70065894 AAATCAATTT
*
70065904 TCAA-GCCTAAGGGTAAAATGGTCATTTTG
1 TCAAGGCCTAAGGGCAAAATGGTCATTTTG
*
70065933 TCAAGGTCTAAGGGCAAAATGGTCATTTT
1 TCAAGGCCTAAGGGCAAAATGGTCATTTT
70065962 ACCAAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (30 bp):
TCAAGGCCTAAGGGCAAAATGGTCATTTTG
Found at i:70066435 original size:46 final size:46
Alignment explanation
Indices: 70066359--70066475 Score: 130
Period size: 46 Copynumber: 2.5 Consensus size: 46
70066349 GATGAGTTCT
* * *
70066359 AGTGTAAGACATGTTTGGGACATGTATCGGCCT-CGATACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGAT-AGCC
* * **
70066405 AGTGTAAGACATGTCTGGGACATGCGTCGGCTACGAGATGATAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGCC
70066451 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
70066476 GCTTCGACTT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
45 2 0.03
46 43 0.70
47 16 0.26
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGCC
Found at i:70066490 original size:47 final size:47
Alignment explanation
Indices: 70066399--70066520 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 47
70066389 CCTCGATACG
*
70066399 TAAGCCAGTGTAAGA-CATGTCTGGGACATGCGTCGGCTACGAGATGA
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGCGTCGACTACGAGAT-A
** * *
70066446 T-AGTTAGTGTAAGACCATGTCTGGGACATGGCTTCGACT-TGAGATA
1 TAAGCCAGTGTAAGACCATGTCTGGGACAT-GCGTCGACTACGAGATA
* *
70066492 TAAGCCAGTGGAAGACCGTGTCTGGGACA
1 TAAGCCAGTGTAAGACCATGTCTGGGACA
70066521 CAGCATTGGC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
46 13 0.21
47 43 0.68
48 7 0.11
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
TAAGCCAGTGTAAGACCATGTCTGGGACATGCGTCGACTACGAGATA
Found at i:70069940 original size:21 final size:21
Alignment explanation
Indices: 70069907--70069955 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
70069897 TATAGTGAGT
* *
70069907 ATATCATATCATATCATGTGC
1 ATATTATAACATATCATGTGC
*
70069928 ATCTTATAACATATCATGTGC
1 ATATTATAACATATCATGTGC
70069949 ATATTAT
1 ATATTAT
70069956 GTCACATCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (21 bp):
ATATTATAACATATCATGTGC
Found at i:70069964 original size:21 final size:21
Alignment explanation
Indices: 70069919--70069967 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
70069909 ATCATATCAT
* *
70069919 ATCATGTGCATCTTATAACAT
1 ATCATGTGCATATTATAACAC
**
70069940 ATCATGTGCATATTATGTCAC
1 ATCATGTGCATATTATAACAC
70069961 ATCATGT
1 ATCATGT
70069968 ATCACAATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (21 bp):
ATCATGTGCATATTATAACAC
Found at i:70077937 original size:25 final size:25
Alignment explanation
Indices: 70077909--70077961 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
70077899 GCCTAGCCTC
70077909 TTTTAAT-AACTGGGGCAAAGCCCAT
1 TTTTAATAAACTGGGGCAAAGCCC-T
**
70077934 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
70077959 TTT
1 TTT
70077962 CTCACTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:70078036 original size:21 final size:21
Alignment explanation
Indices: 70078009--70078069 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
70077999 TATAATGAGT
70078009 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
70078030 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
70078051 ATATTAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
70078070 ATAACAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:70078063 original size:10 final size:11
Alignment explanation
Indices: 70077995--70078069 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
70077985 ACCCAACCCA
*
70077995 TGCATATAATG
1 TGCATATCATG
* *
70078006 AGTATATCAT-
1 TGCATATCATG
*
70078016 AGCATATCATG
1 TGCATATCATG
*
70078027 TGCATCTCAT-
1 TGCATATCATG
**
70078037 AACATATCATG
1 TGCATATCATG
*
70078048 TGCATATTATG
1 TGCATATCATG
70078059 T-CATATCATG
1 TGCATATCATG
70078069 T
1 T
70078070 ATAACAATAT
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
10 25 0.51
11 24 0.49
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (11 bp):
TGCATATCATG
Found at i:70080429 original size:29 final size:30
Alignment explanation
Indices: 70080382--70080449 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
70080372 TGGCCCAAGA
* *
70080382 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
70080412 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
70080442 GAAAATAT
1 GTAAATAT
70080450 TTTAAGGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:70082867 original size:46 final size:46
Alignment explanation
Indices: 70082815--70082996 Score: 242
Period size: 46 Copynumber: 4.0 Consensus size: 46
70082805 AGTGTGCTCT
70082815 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG-AAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-C
* *
70082861 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
70082907 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
70082953 ATGACA-GAAAATGAGTATGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
70082997 TCATGTCAAA
Statistics
Matches: 122, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
45 1 0.01
46 119 0.98
47 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:70082982 original size:92 final size:92
Alignment explanation
Indices: 70082816--70082996 Score: 267
Period size: 92 Copynumber: 2.0 Consensus size: 92
70082806 GTGTGCTCTC
* * *
70082816 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAGCCTGATATGAAATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAGCATGACATGAAATGAGTAAGA
* * *
70082881 CTATGGTTGAAAGATACTATGGCAACT
66 CCATAGTTGAAAGACACTATGGCAACT
*
70082908 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-CATGACA-GAAAATGAGTAT
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG-AAGCATGACATG-AAATGAGTAA
70082971 GACCATAGTTGAAAGACACTATGGCA
64 GACCATAGTTGAAAGACACTATGGCA
70082997 TCATGTCAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
91 1 0.01
92 77 0.96
93 2 0.03
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (92 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAGCATGACATGAAATGAGTAAGA
CCATAGTTGAAAGACACTATGGCAACT
Found at i:70091069 original size:34 final size:33
Alignment explanation
Indices: 70091023--70091119 Score: 124
Period size: 34 Copynumber: 2.9 Consensus size: 33
70091013 TTGAACGGTC
*
70091023 TGGGCCTAAGCCCATATCAGTCACAATATCAGTG
1 TGGGCCTTAGCCCATATCAGT-ACAATATCAGTG
*
70091057 TGGGCCTTAGCCCA-ATACAGTAACAGTATCAGTG
1 TGGGCCTTAGCCCATAT-CAGT-ACAATATCAGTG
* *
70091091 TAGGCCTTAGCCCATTTCAGTACAATATC
1 TGGGCCTTAGCCCATATCAGTACAATATC
70091120 CAAAATGCAT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
33 9 0.16
34 45 0.82
35 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (33 bp):
TGGGCCTTAGCCCATATCAGTACAATATCAGTG
Found at i:70108442 original size:29 final size:31
Alignment explanation
Indices: 70108401--70108459 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
70108391 TTTAATCTAA
*
70108401 TATCTCCATATTT-ATCTATTATAATAAATAT
1 TATCTCCATATTTCATCCATTA-AATAAATAT
70108432 TATCT-CA-ATTTCATCCATTAAATAAATA
1 TATCTCCATATTTCATCCATTAAATAAATA
70108460 GATACACATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 12 0.46
30 9 0.35
31 5 0.19
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (31 bp):
TATCTCCATATTTCATCCATTAAATAAATAT
Found at i:70117116 original size:413 final size:413
Alignment explanation
Indices: 70116349--70117170 Score: 1644
Period size: 413 Copynumber: 2.0 Consensus size: 413
70116339 TTTGAAATCC
70116349 TCGTAGCTCGGTTTACCTGTTTCTACCAATATTTTGAGCTAGGGTTTATATTTAAAAATTTACCC
1 TCGTAGCTCGGTTTACCTGTTTCTACCAATATTTTGAGCTAGGGTTTATATTTAAAAATTTACCC
70116414 ATGAATGATATGCACAAATTTTGATGTTTTATGGTAGAATATGAAGCTTGAGATTGTGTTAAACA
66 ATGAATGATATGCACAAATTTTGATGTTTTATGGTAGAATATGAAGCTTGAGATTGTGTTAAACA
70116479 ACTTTTGCGAAGTGATTTTACGTAAAAATGACTAAAATGACATAATCAGTGAAAATACCTAATGT
131 ACTTTTGCGAAGTGATTTTACGTAAAAATGACTAAAATGACATAATCAGTGAAAATACCTAATGT
70116544 TCATAAGTACATGTTAGAGTGAGAATTGGAGGTTGTTGTAGAAGGGAAAAATGATCAGCATATCA
196 TCATAAGTACATGTTAGAGTGAGAATTGGAGGTTGTTGTAGAAGGGAAAAATGATCAGCATATCA
70116609 TAAAACATAAGAAAATAGAATGAAGTTTAGTTTACGAGATTTGGGGAAAAGTGTAAATATGTGAA
261 TAAAACATAAGAAAATAGAATGAAGTTTAGTTTACGAGATTTGGGGAAAAGTGTAAATATGTGAA
70116674 AGTTTAGGGGCAAAATTGTAATTTTTCCAAAAATGATTTTGTGTTGATTTGAATAATTTGAGTCC
326 AGTTTAGGGGCAAAATTGTAATTTTTCCAAAAATGATTTTGTGTTGATTTGAATAATTTGAGTCC
70116739 TAATTAGGCTATATTTGAATAAA
391 TAATTAGGCTATATTTGAATAAA
70116762 TCGTAGCTCGGTTTACCTGTTTCTACCAATATTTTGAGCTAGGGTTTATATTTAAAAATTTACCC
1 TCGTAGCTCGGTTTACCTGTTTCTACCAATATTTTGAGCTAGGGTTTATATTTAAAAATTTACCC
70116827 ATGAATGATATGCACAAATTTTGATGTTTTATGGTAGAATATGAAGCTTGAGATTGTGTTAAACA
66 ATGAATGATATGCACAAATTTTGATGTTTTATGGTAGAATATGAAGCTTGAGATTGTGTTAAACA
70116892 ACTTTTGCGAAGTGATTTTACGTAAAAATGACTAAAATGACATAATCAGTGAAAATACCTAATGT
131 ACTTTTGCGAAGTGATTTTACGTAAAAATGACTAAAATGACATAATCAGTGAAAATACCTAATGT
70116957 TCATAAGTACATGTTAGAGTGAGAATTGGAGGTTGTTGTAGAAGGGAAAAATGATCAGCATATCA
196 TCATAAGTACATGTTAGAGTGAGAATTGGAGGTTGTTGTAGAAGGGAAAAATGATCAGCATATCA
70117022 TAAAACATAAGAAAATAGAATGAAGTTTAGTTTACGAGATTTGGGGAAAAGTGTAAATATGTGAA
261 TAAAACATAAGAAAATAGAATGAAGTTTAGTTTACGAGATTTGGGGAAAAGTGTAAATATGTGAA
70117087 AGTTTAGGGGCAAAATTGTAATTTTTCCAAAAATGATTTTGTGTTGATTTGAATAATTTGAGTCC
326 AGTTTAGGGGCAAAATTGTAATTTTTCCAAAAATGATTTTGTGTTGATTTGAATAATTTGAGTCC
70117152 TAATTAGGCTATATTTGAA
391 TAATTAGGCTATATTTGAA
70117171 ATCATAGAGC
Statistics
Matches: 409, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
413 409 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (413 bp):
TCGTAGCTCGGTTTACCTGTTTCTACCAATATTTTGAGCTAGGGTTTATATTTAAAAATTTACCC
ATGAATGATATGCACAAATTTTGATGTTTTATGGTAGAATATGAAGCTTGAGATTGTGTTAAACA
ACTTTTGCGAAGTGATTTTACGTAAAAATGACTAAAATGACATAATCAGTGAAAATACCTAATGT
TCATAAGTACATGTTAGAGTGAGAATTGGAGGTTGTTGTAGAAGGGAAAAATGATCAGCATATCA
TAAAACATAAGAAAATAGAATGAAGTTTAGTTTACGAGATTTGGGGAAAAGTGTAAATATGTGAA
AGTTTAGGGGCAAAATTGTAATTTTTCCAAAAATGATTTTGTGTTGATTTGAATAATTTGAGTCC
TAATTAGGCTATATTTGAATAAA
Found at i:70125409 original size:47 final size:47
Alignment explanation
Indices: 70125340--70125463 Score: 212
Period size: 47 Copynumber: 2.6 Consensus size: 47
70125330 ATGGTTGAGT
*
70125340 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGACA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGACA
* *
70125387 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGACA
*
70125434 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
70125464 CTTATGGATG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGACA
Found at i:70128913 original size:27 final size:27
Alignment explanation
Indices: 70128818--70128923 Score: 95
Period size: 28 Copynumber: 3.8 Consensus size: 27
70128808 CTTTTACAAT
* * *
70128818 GATCGCCACAAATGCTTCATTTAACAGA
1 GATCACCACAAAGGTTTC-TTTAACAGA
**
70128846 GATCACCACAAAAACTTTCTTTAACAGA
1 GATCACCAC-AAAGGTTTCTTTAACAGA
* * *
70128874 GACCACCATAAAGGTTTCTTTTACAGA
1 GATCACCACAAAGGTTTCTTTAACAGA
*
70128901 GATCGCCACAAAGGCGTTTCTTT
1 GATCACCACAAA-G-GTTTCTTT
70128924 CTATAAGATT
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
27 24 0.38
28 25 0.40
29 14 0.22
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (27 bp):
GATCACCACAAAGGTTTCTTTAACAGA
Found at i:70131262 original size:42 final size:43
Alignment explanation
Indices: 70131195--70131294 Score: 105
Period size: 42 Copynumber: 2.3 Consensus size: 43
70131185 GATTTGTGAT
* * *
70131195 TTACGTGTAAGACCATGTCTAGGACA-TAGGCATC-GTATATGA
1 TTACATGTAAGACCATATCTAGGACAGT-GGCATCAATATATGA
** * * *
70131237 TTTTATGTAAGACCCTATCTGGGACAGTGGCATCAATATTTGA
1 TTACATGTAAGACCATATCTAGGACAGTGGCATCAATATATGA
70131280 TTACATGTAAGACCA
1 TTACATGTAAGACCA
70131295 CGTCTGGGAC
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
42 26 0.58
43 19 0.42
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCATATCTAGGACAGTGGCATCAATATATGA
Found at i:70131311 original size:43 final size:42
Alignment explanation
Indices: 70131158--70131312 Score: 134
Period size: 43 Copynumber: 3.6 Consensus size: 42
70131148 TGTTATCATA
* * *
70131158 TAAGACCACGTCTGGAACGTTGGCATCGAT-TTGTGATTTACGTG
1 TAAGACCACGTCTGGGACATTGGCATC-ATATT-TGA-TTACATG
* * * * * **
70131202 TAAGACCATGTCTAGGACATAGGCATCGTATATGATTTTATG
1 TAAGACCACGTCTGGGACATTGGCATCATATTTGATTACATG
* *
70131244 TAAGACC-CTATCTGGGACAGTGGCATCAATATTTGATTACATG
1 TAAGACCAC-GTCTGGGACATTGGCATC-ATATTTGATTACATG
*
70131287 TAAGACCACGTCTGGGACTTTGGCAT
1 TAAGACCACGTCTGGGACATTGGCAT
70131313 TTTACGAGTT
Statistics
Matches: 85, Mismatches: 22, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
42 25 0.29
43 36 0.42
44 24 0.28
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACATTGGCATCATATTTGATTACATG
Found at i:70131816 original size:33 final size:33
Alignment explanation
Indices: 70131779--70131845 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
70131769 ATAAATAGAC
70131779 ATAGTTTGATTGGTGATGTAATGAATATGTGCA
1 ATAGTTTGATTGGTGATGTAATGAATATGTGCA
70131812 ATAGTTTGATTGGTGATGTAATGAATATGTGCA
1 ATAGTTTGATTGGTGATGTAATGAATATGTGCA
70131845 A
1 A
70131846 GCTTGACTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.03, G:0.27, T:0.39
Consensus pattern (33 bp):
ATAGTTTGATTGGTGATGTAATGAATATGTGCA
Found at i:70137511 original size:52 final size:50
Alignment explanation
Indices: 70137415--70137546 Score: 138
Period size: 52 Copynumber: 2.6 Consensus size: 50
70137405 ATTGTGAGAA
* * ** **
70137415 CACATGTGTAGTACTATGTGGAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACATGTGCAAAATGG--TTAGGT
* * *
70137467 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTGCCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACATGTGCAAAATGGTTAGGT
* * *
70137517 CGCATGTGTATTACTAAGTGTAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
70137547 TGCGTACCCG
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 32 0.48
52 35 0.52
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACATGTGCAAAATGGTTAGGT
Found at i:70137628 original size:51 final size:51
Alignment explanation
Indices: 70137514--70137652 Score: 143
Period size: 51 Copynumber: 2.7 Consensus size: 51
70137504 CAGATGGTTA
** * * *** *
70137514 GGTCGCATGTGTATTACTAAGTGTAGGCTACTATGCGTACCCGATATCTTC
1 GGTCGCATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTC
* * *
70137565 GATCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTT
1 GGTCGCATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTC
* * * *
70137616 GGTCGCAAGTGTGGTACTATGTGAAGGCCACTTTGTG
1 GGTCGCATGTGTGGTACTAAGTGTAGGCCACTATGTG
70137653 AAGAAGGTGG
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (51 bp):
GGTCGCATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAAAGATAGCTTC
Found at i:70141486 original size:20 final size:20
Alignment explanation
Indices: 70141463--70141507 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
70141453 AAGGACTACA
* *
70141463 ATGAACATTTGTAAAATTTG
1 ATGAAAATTTCTAAAATTTG
* *
70141483 ATGAAAATTTCTGAAATTTT
1 ATGAAAATTTCTAAAATTTG
70141503 ATGAA
1 ATGAA
70141508 TACATGTGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGAAAATTTCTAAAATTTG
Found at i:70153247 original size:29 final size:28
Alignment explanation
Indices: 70153189--70153253 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
70153179 GTGTATAAGT
** *
70153189 CTAAATTGTAAAAGGAGATTTTGACAGA
1 CTAAATTGTAAAAAAAGATTTTGAAAGA
70153217 CTAAATTGTAGAAAAAAGATTTT-AAAGGA
1 CTAAATTGTA-AAAAAAGATTTTGAAA-GA
70153246 CTTAAATT
1 C-TAAATT
70153254 AGACTAAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 12 0.39
29 13 0.42
30 6 0.19
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (28 bp):
CTAAATTGTAAAAAAAGATTTTGAAAGA
Found at i:70155430 original size:51 final size:51
Alignment explanation
Indices: 70155354--70155593 Score: 306
Period size: 51 Copynumber: 4.8 Consensus size: 51
70155344 TGAGGTTGCA
*
70155354 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
*
70155405 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
* * * * ** * *
70155456 TGTGTAGTACTAACTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
* * * * * * *
70155506 TGTGTAGTACTAAGTTCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
70155555 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
70155594 GCTTTGGCTA
Statistics
Matches: 168, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 40 0.24
50 44 0.26
51 84 0.50
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
Found at i:70155530 original size:101 final size:100
Alignment explanation
Indices: 70155352--70155593 Score: 306
Period size: 101 Copynumber: 2.4 Consensus size: 100
70155342 TGTGAGGTTG
* * *
70155352 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACGTGTGTAGTACTA
*
70155417 AGTGCAGGCTACTATGCGTACCCGATAACTTCGATCA
66 AGTGCAGGCTACTACGCGTACCCGATAA-TT-GATCA
* * * * ** *
70155454 CGTGTGTAGTACTAACTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACGTGTGTAGTACTA
* * * * *
70155518 AGTTCAGGCTACTACGTGTACCGGATAATTGGTCG
66 AGTGCAGGCTACTACGCGTACCCGATAATTGATCA
*
70155553 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
70155594 GCTTTGGCTA
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
99 38 0.32
100 2 0.02
101 44 0.37
102 34 0.29
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (100 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACGTGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCCGATAATTGATCA
Found at i:70160170 original size:39 final size:39
Alignment explanation
Indices: 70160115--70160277 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
70160105 ATTTTATGTG
* *
70160115 TATCCGGACTTGGGGTCCTCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
70160154 TATCCGGACCTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
70160193 TATCCGGACTTAGGGTCCGTAGGCTATGTACTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
70160232 TATCCGGACTTAAGGTCAGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
70160271 TGTCCGG
1 TATCCGG
70160278 GCTAAAGTCC
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:70160293 original size:39 final size:39
Alignment explanation
Indices: 70160115--70160347 Score: 222
Period size: 39 Copynumber: 6.0 Consensus size: 39
70160105 ATTTTATGTG
** *
70160115 TATCCGGACTTGGGGTCCTCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
70160154 TATCCGGACCTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
70160193 TATCCGGACTTAGGGTCCGTAGGCTATGTACTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
70160232 TATCCGGACTTAAGGTCAGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
70160271 TGTCCGGGC-TAAAGTCCCGCAGGCT-TCGAGCTGGTATTA
1 TATCCGGACTTAAGGT-CCGCAGGCTAT-GTGCTGGAATTA
** **
70160310 TA-CCGGGTTTAAATTACCGCAGGCT-TGTGCTGGTAATT
1 TATCCGGACTTAAGGT-CCGCAGGCTATGTGCTGG-AATT
70160348 GGTTTCAAGT
Statistics
Matches: 164, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
38 16 0.10
39 148 0.90
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:70162393 original size:43 final size:43
Alignment explanation
Indices: 70162346--70162483 Score: 133
Period size: 43 Copynumber: 3.2 Consensus size: 43
70162336 TCTCAAATGT
*
70162346 GGTCTTACATATAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATATAATCAAATATCGATGCCACTATCCCAGACAG
* * * * *
70162389 GGTCTTACACAAAATCAAATA-CGATGTCGA-TATCCTAGACAT
1 GGTCTTACATATAATCAAATATCGATG-CCACTATCCCAGACAG
*
70162431 GGTCTTACATGTAAATCATAAT-TCGATGCCAAC-ATCCCAGAC-G
1 GGTCTTACATAT-AATCA-AATATCGATGCC-ACTATCCCAGACAG
70162474 TGGTCTTACA
1 -GGTCTTACA
70162484 CAAGAACACA
Statistics
Matches: 76, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
42 23 0.30
43 27 0.36
44 26 0.34
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACATATAATCAAATATCGATGCCACTATCCCAGACAG
Found at i:70162478 original size:44 final size:42
Alignment explanation
Indices: 70162344--70162483 Score: 133
Period size: 44 Copynumber: 3.3 Consensus size: 42
70162334 TGTCTCAAAT
*
70162344 GTGGTCTTACATAT-AATCAAATATCGATGCCACTGTCCCAGAC
1 GTGGTCTTACATATAAATCAAAT-TCGATGCCAC-ATCCCAGAC
* * * * *
70162387 AG-GGTCTTACACA-AAATCAAATACGATGTCGATATCCTAGAC
1 -GTGGTCTTACATATAAATCAAATTCGATG-CCACATCCCAGAC
* *
70162429 ATGGTCTTACATGTAAATCATAATTCGATGCCAACATCCCAGAC
1 GTGGTCTTACATATAAATCA-AATTCGATGCC-ACATCCCAGAC
70162473 GTGGTCTTACA
1 GTGGTCTTACA
70162484 CAAGAACACA
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
42 21 0.28
43 27 0.36
44 28 0.37
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
GTGGTCTTACATATAAATCAAATTCGATGCCACATCCCAGAC
Found at i:70171604 original size:42 final size:41
Alignment explanation
Indices: 70171543--70171660 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 41
70171533 TACTATACCA
* * **
70171543 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATA-GCCAGATATGGTCTTACACGTAATCTAATATCG
*
70171585 ATGCCAATAGCCAGCTATGGTCTTACACG-AAGTCTAATATCG
1 ATGCC-ATAGCCAGATATGGTCTTACACGTAA-TCTAATATCG
*
70171627 ATGCCATATCCAAGATATGGTCTTACACGTAATC
1 ATGCCATAGCC-AGATATGGTCTTACACGTAATC
70171661 CTAGTAATCC
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
41 7 0.11
42 53 0.82
43 5 0.08
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (41 bp):
ATGCCATAGCCAGATATGGTCTTACACGTAATCTAATATCG
Found at i:70172544 original size:17 final size:17
Alignment explanation
Indices: 70172502--70172535 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
70172492 GTCATTGCCA
70172502 TAAAACTTTCACTAAGG
1 TAAAACTTTCACTAAGG
70172519 TAAAACTTTCACTAAGG
1 TAAAACTTTCACTAAGG
70172536 CTATACTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (17 bp):
TAAAACTTTCACTAAGG
Found at i:70175656 original size:47 final size:46
Alignment explanation
Indices: 70175581--70175794 Score: 213
Period size: 46 Copynumber: 4.6 Consensus size: 46
70175571 AGGCTATTGT
* *
70175581 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTT-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GACGA
* * *
70175627 GAGCAAGTGTAAGACCATGTCTGGTACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGACGA
* *
70175675 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACG-A
* * * * *
70175722 -TGCTAGTATAAGACATGTCTGAGACATGCATCGG-C-T-ACAAGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGA
* *
70175764 TGTGTTAGTGTAAGACCATGTCTGGGACATG
1 -GAGCTAGTGTAAGA-CATGTCTGGGACATG
70175795 ATATTGGCCT
Statistics
Matches: 143, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 11 0.08
45 15 0.10
46 60 0.42
47 27 0.19
48 25 0.17
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGA
Found at i:70178999 original size:40 final size:40
Alignment explanation
Indices: 70178955--70179143 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
70178945 GCTACTTGCT
70178955 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
70178995 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
70179035 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* ** * *
70179075 CAATTGCCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
70179115 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
70179144 CATCTGAATA
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 2 0.01
40 132 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:70185927 original size:40 final size:40
Alignment explanation
Indices: 70185883--70186071 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
70185873 GCTACTTGCT
70185883 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
70185923 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
**
70185963 CAAATGCCTTCGGGACTTAGCCTAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* ** * *
70186003 CAATTGCCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
70186043 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
70186072 CATCTGAATA
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 131 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:70194488 original size:6 final size:6
Alignment explanation
Indices: 70194472--70194501 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
70194462 TCATCTATTA
70194472 AGAATTC AGAATC AGAATC AGAATC AGAAT
1 AGAA-TC AGAATC AGAATC AGAATC AGAAT
70194502 TACACTGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:70199406 original size:14 final size:11
Alignment explanation
Indices: 70199370--70199397 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
70199360 AATATCATAT
70199370 AACCATAAATA
1 AACCATAAATA
70199381 AACCATAAATA
1 AACCATAAATA
70199392 AACCAT
1 AACCAT
70199398 TTCAAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.61, C:0.21, G:0.00, T:0.18
Consensus pattern (11 bp):
AACCATAAATA
Found at i:70201954 original size:40 final size:40
Alignment explanation
Indices: 70201860--70202004 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
70201850 TACTTGAAAG
*
70201860 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
70201901 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
70201941 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
70201981 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
70202005 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:70203645 original size:27 final size:27
Alignment explanation
Indices: 70203615--70203792 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70203605 ATATTGAGTC
* * * *
70203615 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70203642 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70203669 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70203697 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70203724 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70203751 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70203778 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70203793 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70203754 original size:82 final size:81
Alignment explanation
Indices: 70203636--70203791 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70203626 TGCTATATAA
* *
70203636 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70203701 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70203718 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70203782 CACTTAGTGC
65 CACTTAGTGC
70203792 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70207911 original size:42 final size:43
Alignment explanation
Indices: 70207795--70207911 Score: 166
Period size: 43 Copynumber: 2.7 Consensus size: 43
70207785 TACCAATGTT
*
70207795 ATATCCCAGATATGGTCTTACACGTAATCTCGTATCGATGCCA
1 ATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCA
* * * *
70207838 ATAGCCCAAATATGGTCTTACGCG-AATTCTCATATCGATGGC-
1 ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCGATGCCA
70207880 ATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATATCCCAGATATGGTCTTACACGTAATCTCA
70207912 GTAACCTTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
42 28 0.44
43 36 0.56
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCA
Found at i:70209366 original size:30 final size:31
Alignment explanation
Indices: 70209332--70209390 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
70209322 GTATATACTC
*
70209332 AAAATTTG-AGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGGA-TAATAGTGAAAATATGA
70209362 AAAATTTGAAGGGATAATAGTGAAAATAT
1 AAAATTTGAAGGGATAATAGTGAAAATAT
70209391 TTTAAGGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGGATAATAGTGAAAATATGA
Found at i:70209397 original size:24 final size:22
Alignment explanation
Indices: 70209355--70209398 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
70209345 TTAAAGTGTA
70209355 AATATGAAAAATTTGAAGGGAT
1 AATATGAAAAATTTGAAGGGAT
*
70209377 AATAGTGAAAATATTTTAAGGG
1 AATA-TGAAAA-ATTTGAAGGG
70209399 TGGAAGGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.30
Consensus pattern (22 bp):
AATATGAAAAATTTGAAGGGAT
Found at i:70209677 original size:11 final size:11
Alignment explanation
Indices: 70209661--70209685 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
70209651 ATATGATATT
70209661 TTATTATTTTA
1 TTATTATTTTA
70209672 TTATTATTTTA
1 TTATTATTTTA
70209683 TTA
1 TTA
70209686 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:70209977 original size:56 final size:56
Alignment explanation
Indices: 70209916--70210028 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
70209906 AAGGAATAGA
70209916 AGCTGGAGGAGAGAGAAAATCAAATTAAAGATTGAAATCAATGGAACAAGGTAAGT
1 AGCTGGAGGAGAGAGAAAATCAAATTAAAGATTGAAATCAATGGAACAAGGTAAGT
70209972 AGCTGGAGGAGAGAGAAAATCAAATTAAAGATTGAAATCAATGGAACAAGGTAAGT
1 AGCTGGAGGAGAGAGAAAATCAAATTAAAGATTGAAATCAATGGAACAAGGTAAGT
70210028 A
1 A
70210029 CATCAATATT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.49, C:0.07, G:0.27, T:0.18
Consensus pattern (56 bp):
AGCTGGAGGAGAGAGAAAATCAAATTAAAGATTGAAATCAATGGAACAAGGTAAGT
Found at i:70221939 original size:15 final size:15
Alignment explanation
Indices: 70221888--70221956 Score: 54
Period size: 15 Copynumber: 4.6 Consensus size: 15
70221878 CAAGAAAATC
70221888 GAATAAAGAAAT-CA
1 GAATAAAGAAATCCA
* *
70221902 AAGATAGAA-AAACCCA
1 GA-ATA-AAGAAATCCA
*
70221918 AAATAAAGAAATCCA
1 GAATAAAGAAATCCA
70221933 GAATAAA-AAGATCCA
1 GAATAAAGAA-ATCCA
*
70221948 GGATAAAGA
1 GAATAAAGA
70221957 TACCCAAGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
14 5 0.11
15 32 0.73
16 7 0.16
ACGTcount: A:0.62, C:0.12, G:0.14, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:70226286 original size:14 final size:14
Alignment explanation
Indices: 70226267--70226297 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
70226257 CCACTGATTA
70226267 CCTTATTGCCAATC
1 CCTTATTGCCAATC
70226281 CCTTATTGCCAATC
1 CCTTATTGCCAATC
70226295 CCT
1 CCT
70226298 AGAGTTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.39, G:0.06, T:0.35
Consensus pattern (14 bp):
CCTTATTGCCAATC
Found at i:70226327 original size:6 final size:6
Alignment explanation
Indices: 70226316--70226350 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
70226306 GAATACAAAG
*
70226316 TTGAAA TTGAAA TTAAAA TTGAAA TTGAAA -TGAAA
1 TTGAAA TTGAAA TTGAAA TTGAAA TTGAAA TTGAAA
70226351 AAATAACCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.31
Consensus pattern (6 bp):
TTGAAA
Found at i:70226337 original size:18 final size:18
Alignment explanation
Indices: 70226316--70226351 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70226306 GAATACAAAG
*
70226316 TTGAAATTGAAATTAAAA
1 TTGAAATTGAAATGAAAA
70226334 TTGAAATTGAAATGAAAA
1 TTGAAATTGAAATGAAAA
70226352 AATAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.31
Consensus pattern (18 bp):
TTGAAATTGAAATGAAAA
Found at i:70227050 original size:25 final size:25
Alignment explanation
Indices: 70227016--70227071 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
70227006 CTTACCAGTA
70227016 AAGAATTGAAGCTAAATTGGCGTTC
1 AAGAATTGAAGCTAAATTGGCGTTC
70227041 AAGAATTGAAGCTAAATTGGCGTTC
1 AAGAATTGAAGCTAAATTGGCGTTC
70227066 AAGAAT
1 AAGAAT
70227072 GAATGGTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (25 bp):
AAGAATTGAAGCTAAATTGGCGTTC
Found at i:70228623 original size:23 final size:22
Alignment explanation
Indices: 70228596--70228646 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
70228586 CTAAATTTTT
*
70228596 AAATTCGAAAAGTAAAAGGATTA
1 AAATTCG-AAAGTAAAAGGATGA
* *
70228619 AAATTTTGAAAGTAAAAGTATGA
1 AAA-TTCGAAAGTAAAAGGATGA
70228642 AAATT
1 AAATT
70228647 AAATTCCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 2 0.08
23 19 0.79
24 3 0.12
ACGTcount: A:0.55, C:0.02, G:0.16, T:0.27
Consensus pattern (22 bp):
AAATTCGAAAGTAAAAGGATGA
Found at i:70228931 original size:27 final size:27
Alignment explanation
Indices: 70228828--70228940 Score: 68
Period size: 28 Copynumber: 4.0 Consensus size: 27
70228818 AAGCCCCTAC
* *
70228828 TTTTATTAAAAATTATAAAAAATTTAAAA
1 TTTTAATAAAAATTA-AAAATA-TTAAAA
* ** *
70228857 --TAAATAAAAGCTATAAATATTATTAAA
1 TTTTAATAAAAATTAAAAATATTA--AAA
**
70228884 TTTTAATAAAAATTTTCAAATATTAAAA
1 TTTTAATAAAAA-TTAAAAATATTAAAA
* *
70228912 TTTTATTAAAAATTAAAAATTATAAAAA
1 TTTTAATAAAAATTAAAAA-TATTAAAA
70228940 T
1 T
70228941 CGTAAAAAAT
Statistics
Matches: 63, Mismatches: 15, Indels: 13
0.69 0.16 0.14
Matches are distributed among these distances:
25 3 0.05
26 4 0.06
27 17 0.27
28 22 0.35
29 8 0.13
30 9 0.14
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.40
Consensus pattern (27 bp):
TTTTAATAAAAATTAAAAATATTAAAA
Found at i:70228969 original size:64 final size:63
Alignment explanation
Indices: 70228901--70229020 Score: 156
Period size: 64 Copynumber: 1.9 Consensus size: 63
70228891 AAAAATTTTC
*
70228901 AAATATTAAAATTTTATTAAA-AATTAAAAATTATA-AAAATCGTAAA-AAATTATAAAATATAT
1 AAATA-TAAAATTTTA-TAAACAATAAAAAATTATACAAAAT-GTAAAGAAA-TATAAAATATAT
70228963 AG
62 AG
*
70228965 AAATATAAAATTTTATAAAGCCATAAAAAATTATACAAAATGTAAAGAAATATAAA
1 AAATATAAAATTTTATAAA-CAATAAAAAATTATACAAAATGTAAAGAAATATAAA
70229021 TTTCGTAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
62 4 0.08
63 10 0.20
64 28 0.56
65 8 0.16
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (63 bp):
AAATATAAAATTTTATAAACAATAAAAAATTATACAAAATGTAAAGAAATATAAAATATATAG
Found at i:70228973 original size:27 final size:27
Alignment explanation
Indices: 70228919--70228983 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
70228909 AAATTTTATT
*
70228919 AAAAATTA-AAAATTATAAAAATCGTA
1 AAAAATTATAAAATTATAAAAATCATA
*
70228945 AAAAATTATAAAATATATAGAAAT-ATA
1 AAAAATTATAAAAT-TATAAAAATCATA
**
70228972 AAATTTTATAAA
1 AAAAATTATAAA
70228984 GCCATAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.24
27 17 0.52
28 8 0.24
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (27 bp):
AAAAATTATAAAATTATAAAAATCATA
Found at i:70229352 original size:11 final size:11
Alignment explanation
Indices: 70229338--70229379 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
70229328 TGTTTTTTAT
70229338 TATTTTGTTGC
1 TATTTTGTTGC
*
70229349 TATTTTCTTGC
1 TATTTTGTTGC
* *
70229360 TATTTTTTTAC
1 TATTTTGTTGC
70229371 TATTTTGTT
1 TATTTTGTT
70229380 ACCATTTCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.12, C:0.10, G:0.10, T:0.69
Consensus pattern (11 bp):
TATTTTGTTGC
Found at i:70229381 original size:11 final size:10
Alignment explanation
Indices: 70229320--70229386 Score: 53
Period size: 11 Copynumber: 6.3 Consensus size: 10
70229310 GTTCTTTTTC
*
70229320 TTTTTTACTG
1 TTTTTTACTA
*
70229330 TTTTTTATTA
1 TTTTTTACTA
*
70229340 TTTTGTTGCTA
1 TTTT-TTACTA
*
70229351 TTTTCTTGCTA
1 TTTT-TTACTA
70229362 TTTTTTTACTA
1 -TTTTTTACTA
*
70229373 TTTTGTTACCA
1 TTTT-TTACTA
70229384 TTT
1 TTT
70229387 CACAATTATG
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
10 16 0.34
11 27 0.57
12 4 0.09
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.69
Consensus pattern (10 bp):
TTTTTTACTA
Found at i:70229386 original size:22 final size:21
Alignment explanation
Indices: 70229320--70229386 Score: 62
Period size: 22 Copynumber: 3.1 Consensus size: 21
70229310 GTTCTTTTTC
* *
70229320 TTTTTTACTGTTTTTTATTAT
1 TTTTTTACTATTTTTTACTAT
* * *
70229341 TTTGTTGCTATTTTCTTGCTAT
1 TTTTTTACTATTTT-TTACTAT
*
70229363 TTTTTTACTATTTTGTTACCAT
1 TTTTTTACTATTTT-TTACTAT
70229385 TT
1 TT
70229387 CACAATTATG
Statistics
Matches: 35, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
21 11 0.31
22 24 0.69
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.69
Consensus pattern (21 bp):
TTTTTTACTATTTTTTACTAT
Found at i:70229857 original size:31 final size:31
Alignment explanation
Indices: 70229793--70229861 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
70229783 AGGAGTTGAT
***
70229793 AATTTTTTTATGATTTTTATAAAATTTTATA
1 AATTTTTTTATGATTTTTATAAAAAAATATA
70229824 AATTTTTTTATGATTTTTATAAAAAAA-ATTA
1 AATTTTTTTATGATTTTTATAAAAAAATA-TA
70229855 AATTTTT
1 AATTTTT
70229862 AATAAATTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 1 0.03
31 33 0.97
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (31 bp):
AATTTTTTTATGATTTTTATAAAAAAATATA
Found at i:70230136 original size:86 final size:85
Alignment explanation
Indices: 70229990--70230146 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 85
70229980 TTTGATGGTC
* *
70229990 TTTTTGATCCATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAAAAGTAGGGGCTTAATTGTT
1 TTTTTGATCCATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAAAAGTAGGGACTTAATT-TC
70230055 TTTTTAAGAAGTTTGAGGGCT
65 TTTTTAAGAAGTTTGAGGGCT
* * ** *
70230076 TTTTTGATGCATTTTGAAAGTTTAAGTACTTAATTGAGT-ATAAAAAAA-TGAGGGATTTAATTT
1 TTTTTGATCCATTTTGAAAGTTCAAGTACCCAATTGAGTGA-AAAAAAAGT-AGGGACTTAATTT
70230139 CTTTTTAA
64 CTTTTTAA
70230147 AAATTTTTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 10 0.16
86 52 0.84
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (85 bp):
TTTTTGATCCATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAAAAGTAGGGACTTAATTTCT
TTTTAAGAAGTTTGAGGGCT
Found at i:70235507 original size:94 final size:95
Alignment explanation
Indices: 70235362--70235574 Score: 286
Period size: 94 Copynumber: 2.3 Consensus size: 95
70235352 TCACCCATGT
* * *
70235362 TAAGTCTCACTCTACGTGTTCCTTTAAGAACATGAGCTTTTGTGAGCCTCACTTTGCGTGCTCCT
1 TAAGTCTCACTCTACGTGTTCCTTTAAGAACATGAGCTTTTGCGAGCCTCACTCTACGTGCTCCT
* *
70235427 CGTA-AGCATGGGATTTTGTGAGTTTTGTGA
66 CG-AGAGCATGGGATTTTGTAAGATTTGTGA
** *
70235457 TAAGTCTCACTCTGTGTGTTCCTTTGA-AACATGAGCTTTTGCGAGCCTCACTCTACGTGCTCCT
1 TAAGTCTCACTCTACGTGTTCCTTTAAGAACATGAGCTTTTGCGAGCCTCACTCTACGTGCTCCT
* *
70235521 TGAGAGCATGGGCTTTTGTAAGATTTGTGA
66 CGAGAGCATGGGATTTTGTAAGATTTGTGA
* * *
70235551 TATGTCTCATTCTACGTGCTCCTT
1 TAAGTCTCACTCTACGTGTTCCTT
70235575 ATGAGTTAGG
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
93 1 0.01
94 77 0.75
95 24 0.24
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (95 bp):
TAAGTCTCACTCTACGTGTTCCTTTAAGAACATGAGCTTTTGCGAGCCTCACTCTACGTGCTCCT
CGAGAGCATGGGATTTTGTAAGATTTGTGA
Found at i:70245466 original size:92 final size:93
Alignment explanation
Indices: 70245342--70245512 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
70245332 TGCCCATAAG
70245342 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70245407 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGAATGCCTAGTTACATCTCA
* *
70245435 CGAACTCGGACTC-ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70245499 ACGAGTTCGAATGC
66 ACGAGTTCGAATGC
70245513 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 62 0.83
93 13 0.17
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGAATGCCTAGTTACATCTCA
Found at i:70245507 original size:46 final size:46
Alignment explanation
Indices: 70245335--70245507 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
70245325 TGTAACCTGC
* *
70245335 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
70245381 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70245431 -C-TCA-CGAACTCGGACTC-ACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70245473 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
70245508 AATGCTCAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
45 12 0.11
46 64 0.59
47 12 0.11
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70248556 original size:96 final size:96
Alignment explanation
Indices: 70248387--70248624 Score: 354
Period size: 96 Copynumber: 2.5 Consensus size: 96
70248377 GGTTATGTGT
** *
70248387 GAGCCAGTGTAAGACCCA-GTTTGGAATGTGGTATC-AGCATTGTTATCTGAGCCAGTGTAAGAC
1 GAGCCAGTGTAAGA-CCATGTTTGGAACATGGCATCGA-CATTGTTATCTGAGCCAGTGTAAGAC
* *
70248450 CATGCTTGGGACATGGCATCGACCTCAATATGC
64 CATGCCTGGGACATGACATCGACCTCAATATGC
*
70248483 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGTGAGCCAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATCTGAGCCAGTGTAAGACCA
*
70248548 TGCCTGGGACATGACATCGGCCTCAATATGC
66 TGCCTGGGACATGACATCGACCTCAATATGC
* * *
70248579 GAGCTAGTGTAAGGCCATGTTTGGAACATGGCATCGGCATTGTTAT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTAT
70248625 TGTAACATCC
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
95 3 0.02
96 126 0.97
97 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (96 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATCTGAGCCAGTGTAAGACCA
TGCCTGGGACATGACATCGACCTCAATATGC
Found at i:70248616 original size:48 final size:48
Alignment explanation
Indices: 70248435--70248614 Score: 234
Period size: 48 Copynumber: 3.8 Consensus size: 48
70248425 ATTGTTATCT
*
70248435 GAGCCAGTGTAAGACCATGCTTGGGACATGGCATCGACCTCAATATGC
1 GAGCCAGTGTAAGACCATGCTTGGAACATGGCATCGACCTCAATATGC
* * *** *
70248483 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGT
1 GAGCCAGTGTAAGACCATGCTTGGAACATGGCATCGACCTCAATATGC
* * * *
70248531 GAGCCAGTGTAAGACCATGCCTGGGACATGACATCGGCCTCAATATGC
1 GAGCCAGTGTAAGACCATGCTTGGAACATGGCATCGACCTCAATATGC
* * *
70248579 GAGCTAGTGTAAGGCCATGTTTGGAACATGGCATCG
1 GAGCCAGTGTAAGACCATGCTTGGAACATGGCATCG
70248615 GCATTGTTAT
Statistics
Matches: 109, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 109 1.00
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGCTTGGAACATGGCATCGACCTCAATATGC
Found at i:70250235 original size:50 final size:50
Alignment explanation
Indices: 70250166--70250413 Score: 302
Period size: 50 Copynumber: 4.9 Consensus size: 50
70250156 TAAGACGGTT
* *
70250166 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * *
70250216 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
70250266 CTTCGATCACGTGTGTAGTACTAAGTGCCA-GCTACTACGTGTATCC-GATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTG-CAGGCTACTACGTGTA-CCAGATTG
* *
70250317 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCCACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * *
70250367 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
70250414 GAGCTTCAGT
Statistics
Matches: 167, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
49 4 0.02
50 122 0.73
51 37 0.22
52 4 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:70250302 original size:101 final size:100
Alignment explanation
Indices: 70250166--70250402 Score: 289
Period size: 101 Copynumber: 2.4 Consensus size: 100
70250156 TAAGACGGTT
* * * *
70250166 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTA-CCAGATTGTTAGGTCGCATGTG
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCC-GATGGTTAGGTCACATGTG
* * *
70250230 TAGTACTAAGTGCAGGCTACTATGCGTACCTGATAG
65 TAGTACTAAGTGCAGGCCACTACGCGTACCAGATAG
* * **
70250266 CTTCGATCACGTGTGTAGTACTAAGTGCCA-GCTACTACGTGTATCCGATGGTTAGGTCATGTGT
1 -TTAGATCACGTGTGTAGTACTAAGTG-CAGGCTACTACATGTATCCGATGGTTAGGTCACATGT
* *
70250330 GTAGTACTAAGTGCAGGCCACTACGTGTACCAGATTG
64 GTAGTACTAAGTGCAGGCCACTACGCGTACCAGATAG
* * *
70250367 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTA
70250403 TGCGTACCAG
Statistics
Matches: 116, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
99 2 0.02
100 29 0.25
101 82 0.71
102 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCCGATGGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCCACTACGCGTACCAGATAG
Found at i:70252762 original size:16 final size:16
Alignment explanation
Indices: 70252741--70252772 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
70252731 TGGGTCTATG
70252741 CTTATGATGTATAAAT
1 CTTATGATGTATAAAT
*
70252757 CTTATGATTTATAAAT
1 CTTATGATGTATAAAT
70252773 ATGTATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (16 bp):
CTTATGATGTATAAAT
Found at i:70254304 original size:74 final size:74
Alignment explanation
Indices: 70254183--70254327 Score: 272
Period size: 74 Copynumber: 2.0 Consensus size: 74
70254173 CTAGCACACG
70254183 GGCGTGCGACTTGGCCGTGTGACCCTATTTCGTTGCTGACATCATAAACAGAGAGTTACACGGGC
1 GGCGTGCGACTTGGCCGTGTGACCCTATTTCGTTGCTGACATCATAAACAGAGAGTTACACGGGC
70254248 TGAGGACAT
66 TGAGGACAT
* *
70254257 GGCGTGTGACTTGGCCGTGTGACCCTATTTCGTTGCTGACATCATAAACAGAGAGTTACATGGGC
1 GGCGTGCGACTTGGCCGTGTGACCCTATTTCGTTGCTGACATCATAAACAGAGAGTTACACGGGC
70254322 TGAGGA
66 TGAGGA
70254328 TACGGGCGTG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (74 bp):
GGCGTGCGACTTGGCCGTGTGACCCTATTTCGTTGCTGACATCATAAACAGAGAGTTACACGGGC
TGAGGACAT
Found at i:70256208 original size:26 final size:26
Alignment explanation
Indices: 70256179--70256286 Score: 139
Period size: 26 Copynumber: 4.2 Consensus size: 26
70256169 TGGTACAAAT
* *
70256179 TGATAACGAGTTAGGTAAATGTTCTA
1 TGATAATGAGTTAGGTAAATGTTCCA
* *
70256205 TGATAATGAATTAGGTAAATATTCCA
1 TGATAATGAGTTAGGTAAATGTTCCA
70256231 TGATAAT-AGGTTAGGTAAATGTTCCA
1 TGATAATGA-GTTAGGTAAATGTTCCA
*
70256257 TGATAATTG-TTTAGGTAAATGTTCCA
1 TGATAA-TGAGTTAGGTAAATGTTCCA
70256283 TGAT
1 TGAT
70256287 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
25 1 0.01
26 70 0.97
27 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.37
Consensus pattern (26 bp):
TGATAATGAGTTAGGTAAATGTTCCA
Found at i:70256244 original size:52 final size:52
Alignment explanation
Indices: 70256188--70256286 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
70256178 TTGATAACGA
*
70256188 GTTAGGTAAATGTTCTATGATAA-TGAATTAGGTAAATATTCCATGATAATAG
1 GTTAGGTAAATGTTCCATGATAATTG-ATTAGGTAAATATTCCATGATAATAG
* *
70256240 GTTAGGTAAATGTTCCATGATAATTGTTTAGGTAAATGTTCCATGAT
1 GTTAGGTAAATGTTCCATGATAATTGATTAGGTAAATATTCCATGAT
70256287 GGGCATTTCA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 41 0.95
53 2 0.05
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.38
Consensus pattern (52 bp):
GTTAGGTAAATGTTCCATGATAATTGATTAGGTAAATATTCCATGATAATAG
Found at i:70257473 original size:8 final size:8
Alignment explanation
Indices: 70257460--70257496 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
70257450 CTAGATTGGC
70257460 AAAAGCCG
1 AAAAGCCG
70257468 AAAAGCCG
1 AAAAGCCG
70257476 AAAAGCCG
1 AAAAGCCG
*
70257484 AAATGCCG
1 AAAAGCCG
70257492 AAAAG
1 AAAAG
70257497 TCGGTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:70257953 original size:27 final size:27
Alignment explanation
Indices: 70257913--70258071 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
70257903 AGGAAGCGTC
*
70257913 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
70257940 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
70257967 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
70257994 CTGGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
70258021 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
70258048 CTGGTGACTTTGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
70258072 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
26 10 0.09
27 103 0.88
28 4 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:70257995 original size:54 final size:53
Alignment explanation
Indices: 70257913--70258071 Score: 230
Period size: 54 Copynumber: 3.0 Consensus size: 53
70257903 AGGAAGCGTC
70257913 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
70257967 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * * *
70258021 CTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTTGTCACA-ATATCTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTGGCTCTGCCACATATATCTG
70258072 GCAGCCTCGC
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 13 0.14
54 83 0.86
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:70260611 original size:27 final size:27
Alignment explanation
Indices: 70260578--70260671 Score: 152
Period size: 27 Copynumber: 3.5 Consensus size: 27
70260568 AGGATTATAT
70260578 CATGGCAAAGTGATAAAGTGTGCCAAA
1 CATGGCAAAGTGATAAAGTGTGCCAAA
*
70260605 TATGGCAAAGTGATAAAGTGTGCCAAA
1 CATGGCAAAGTGATAAAGTGTGCCAAA
* * *
70260632 GATGGCAAGGTGATAAAGTGTGCCAGA
1 CATGGCAAAGTGATAAAGTGTGCCAAA
70260659 CATGGCAAAGTGA
1 CATGGCAAAGTGA
70260672 CAAGTGATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.38, C:0.13, G:0.30, T:0.19
Consensus pattern (27 bp):
CATGGCAAAGTGATAAAGTGTGCCAAA
Found at i:70260730 original size:44 final size:44
Alignment explanation
Indices: 70260674--70260779 Score: 167
Period size: 44 Copynumber: 2.4 Consensus size: 44
70260664 CAAAGTGACA
* *
70260674 AGTGATAAGTGATAAGTGGTAGCTTTAGCCACAGTTATCTGATC
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCCACACTTATCTGATC
* *
70260718 TGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCCACACTTATCTGATC
*
70260762 AGTGACAAGTGACAAGTG
1 AGTGACAAGTGATAAGTG
70260780 ATAAATATGA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (44 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCCACACTTATCTGATC
Found at i:70260897 original size:34 final size:34
Alignment explanation
Indices: 70260874--70260964 Score: 103
Period size: 34 Copynumber: 2.7 Consensus size: 34
70260864 TGATCCATGG
*
70260874 CAAAG-TGTGAAATGTAGGTATGGTATTTCCATA
1 CAAAGCTGTGAAATGTAGGTATGGTATATCCATA
** *
70260907 CCGAGCTGTGAAATGTAGGTATGGTATTTCCATA
1 CAAAGCTGTGAAATGTAGGTATGGTATATCCATA
** * *
70260941 CCGAGTTGTGAAACGTAGGTATGG
1 CAAAGCTGTGAAATGTAGGTATGG
70260965 CGTCGTCCAT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 3 0.06
34 50 0.94
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.31
Consensus pattern (34 bp):
CAAAGCTGTGAAATGTAGGTATGGTATATCCATA
Found at i:70261044 original size:35 final size:35
Alignment explanation
Indices: 70260881--70261108 Score: 228
Period size: 35 Copynumber: 6.6 Consensus size: 35
70260871 TGGCAAAGTG
* *
70260881 TGAAATGTAGGTATGGTA-TTTCCATACCGAGCTG
1 TGAAATGTAGGTATGGTATTTTCCATACCGAGTTA
*
70260915 TGAAATGTAGGTATGGTA-TTTCCATACCGAGTTG
1 TGAAATGTAGGTATGGTATTTTCCATACCGAGTTA
* ** ** ** *
70260949 TGAAACGTAGGTATGGCGTCGTCCATAGTGAGCTA
1 TGAAATGTAGGTATGGTATTTTCCATACCGAGTTA
* * * ** *
70260984 TGATACGTAGGTATGGCATCGTCCATACTGAGTTA
1 TGAAATGTAGGTATGGTATTTTCCATACCGAGTTA
* * *
70261019 TGACATATAGGTATGGTATTTTCCATACCGAG-CA
1 TGAAATGTAGGTATGGTATTTTCCATACCGAGTTA
* * *
70261053 TGAAATTTAGGTATGGTGTTTTCCATACCGAGTTG
1 TGAAATGTAGGTATGGTATTTTCCATACCGAGTTA
70261088 TGAAATGTAGGTATGGTATTT
1 TGAAATGTAGGTATGGTATTT
70261109 CTATAAGGAA
Statistics
Matches: 163, Mismatches: 29, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
34 78 0.48
35 85 0.52
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (35 bp):
TGAAATGTAGGTATGGTATTTTCCATACCGAGTTA
Found at i:70261098 original size:104 final size:103
Alignment explanation
Indices: 70260879--70261103 Score: 245
Period size: 104 Copynumber: 2.2 Consensus size: 103
70260869 CATGGCAAAG
* * * *
70260879 TGTGAAATGTAGGTATGGTATTTCCATACCGAGCTGTGAAATGTAGGTATGGTATTTCCATACCG
1 TGTGAAATGTAGGTATGGCATGTCCATACCGAGCTATGAAATATAGGTATGGTATTTCCATACCG
** **
70260944 AGTTGTGAAACGTAGGTATGGCGTCGTCCATAGTGAGC
66 AGTCATGAAACGTAGGTATGGCGTCGTCCATACCGAGC
* * * * * *
70260982 TATGATACGTAGGTATGGCATCGTCCATACTGAGTTATGACATATAGGTATGGTATTTTCCATAC
1 TGTGAAATGTAGGTATGGCAT-GTCCATACCGAGCTATGAAATATAGGTATGGTA-TTTCCATAC
** * ** *
70261047 CGAG-CATGAAATTTAGGTATGGTGTTTTCCATACCGAGT
64 CGAGTCATGAAACGTAGGTATGGCGTCGTCCATACCGAGC
70261086 TGTGAAATGTAGGTATGG
1 TGTGAAATGTAGGTATGG
70261104 TATTTCTATA
Statistics
Matches: 97, Mismatches: 23, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
103 17 0.18
104 67 0.69
105 13 0.13
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (103 bp):
TGTGAAATGTAGGTATGGCATGTCCATACCGAGCTATGAAATATAGGTATGGTATTTCCATACCG
AGTCATGAAACGTAGGTATGGCGTCGTCCATACCGAGC
Found at i:70262364 original size:45 final size:45
Alignment explanation
Indices: 70262300--70262562 Score: 360
Period size: 45 Copynumber: 6.0 Consensus size: 45
70262290 ATATTGTACA
* *
70262300 ATACTATTCGGGCCTTTGAGCCTAGTAGACTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
70262345 ATACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
70262390 ATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
70262435 ATAGTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
70262480 ATATTATTCGGG-C-TTGAGCCTAGCAGGC-AAAATGCCGGTGA-
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
** * * *
70262521 ATGA--ATTCGGGTTTTTAAACCTAGCAGGTTA-AATGCCGGTGA
1 AT-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
70262563 TTTGATAAGA
Statistics
Matches: 202, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
40 7 0.03
41 2 0.01
42 36 0.18
43 16 0.08
44 1 0.00
45 140 0.69
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:70264659 original size:48 final size:47
Alignment explanation
Indices: 70264560--70264728 Score: 243
Period size: 48 Copynumber: 3.6 Consensus size: 47
70264550 CATATTGCTC
70264560 ATTAGCCATTCGGA-TTTACCACATATA-TATCTCATACATATTTCAT
1 ATTAGCCATTC-GACTTTACCACATATACTATCTCATACATATTTCAT
* *
70264606 GTTAGCCATTCGATTTTACCACATATACGTATCTCATACATATTTCAT
1 ATTAGCCATTCGACTTTACCACATATAC-TATCTCATACATATTTCAT
* *
70264654 ATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
1 ATTAGCCATTCGACTTTACCACATATAC-TATCTCATACATATTTCAT
* *
70264702 AATAGCCATTCGGCTTTACCACATATA
1 ATTAGCCATTCGACTTTACCACATATA
70264729 TATATTTATC
Statistics
Matches: 113, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
45 2 0.02
46 23 0.20
48 88 0.78
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (47 bp):
ATTAGCCATTCGACTTTACCACATATACTATCTCATACATATTTCAT
Found at i:70268180 original size:37 final size:37
Alignment explanation
Indices: 70268121--70268229 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
70268111 AGCTCAGATG
*
70268121 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
* *
70268158 AAATCTCCACACGCAGTCATCGGGTCTTACCAGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
* * *
70268195 TAATCTCCACGCGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
70268230 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:70268430 original size:48 final size:48
Alignment explanation
Indices: 70268376--70268768 Score: 642
Period size: 48 Copynumber: 8.1 Consensus size: 48
70268366 ACACATTTCC
* * *
70268376 TACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
70268424 TACATATTTCACACTAGCCATTCGGCTTAACCACATATACATATCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-T-CA
*
70268474 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
70268522 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
70268570 TACATGTTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
70268618 TACATGTTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70268666 TACATGTTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70268714 TCCATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70268762 TATATAT
1 TACATAT
70268769 ATTTATCTTG
Statistics
Matches: 327, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 282 0.86
49 2 0.01
50 43 0.13
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:70271177 original size:135 final size:135
Alignment explanation
Indices: 70270931--70271204 Score: 390
Period size: 135 Copynumber: 2.0 Consensus size: 135
70270921 AAAAATGATC
* * *
70270931 AAATTAATGCATGAAACTTTCACACATGCATTTACTCACATTATAAACACGGAATATAACTTTTA
1 AAATTAATGCATGAAACTTTCACACATGCATTTACTCACATCATAAACACAGAATATAACTTTCA
**
70270996 ATTTCTTATAGGACTCGGTTTCGTGGTCCCGAAACCACTTTCCGACTACGGTCA-ATTTAGGGCT
66 ATTTCTTATAAAACTCGGTTTCGTGGTCCCGAAACCACTTTCCGACTACGGTCAGA-TTAGGGCT
70271060 GTCACA
130 GTCACA
* * * * * *
70271066 AAATTAATGCTTGAAATTTTTACACATGCATTTACTCACCTCATGAACATAGAATATAACTTTCA
1 AAATTAATGCATGAAACTTTCACACATGCATTTACTCACATCATAAACACAGAATATAACTTTCA
* * *
70271131 ATTAT-TTATAAAACTCGGTTTCGTGGTCCCGAAACCACTTTTCGACTAGGGTCAGATTAGGGGT
66 ATT-TCTTATAAAACTCGGTTTCGTGGTCCCGAAACCACTTTCCGACTACGGTCAGATTAGGGCT
70271195 GTCACA
130 GTCACA
70271201 AAAT
1 AAAT
70271205 GTGTATGTAC
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
135 121 0.98
136 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (135 bp):
AAATTAATGCATGAAACTTTCACACATGCATTTACTCACATCATAAACACAGAATATAACTTTCA
ATTTCTTATAAAACTCGGTTTCGTGGTCCCGAAACCACTTTCCGACTACGGTCAGATTAGGGCTG
TCACA
Found at i:70279652 original size:47 final size:49
Alignment explanation
Indices: 70279591--70279712 Score: 144
Period size: 48 Copynumber: 2.6 Consensus size: 49
70279581 CCGATGCTAC
* * *
70279591 GTCCCAGACATGGTCTTACACTGGCTCATC-CAT-GAAGTTGATGCCAT
1 GTCCCAGACATGGTCTTACACTGGCTCATCAAATAGAAGCTGACGCCAT
* * *
70279638 GTCCCAAACATGGTCTTACACT-G-ACATCGAAATAGAGGCTGACGCCAT
1 GTCCCAGACATGGTCTTACACTGGCTCATC-AAATAGAAGCTGACGCCAT
*
70279686 GTCCCAGACATGGTCTTACACAGGCTC
1 GTCCCAGACATGGTCTTACACTGGCTC
70279713 TCACATCTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
45 4 0.07
46 1 0.02
47 23 0.38
48 31 0.51
49 1 0.02
50 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (49 bp):
GTCCCAGACATGGTCTTACACTGGCTCATCAAATAGAAGCTGACGCCAT
Found at i:70287480 original size:50 final size:49
Alignment explanation
Indices: 70287361--70287495 Score: 173
Period size: 49 Copynumber: 2.7 Consensus size: 49
70287351 CATCCATCAA
*
70287361 GTCGATGACATGTCCCAGACATGGTCTTACATTGACTATCAAAATAGCG
1 GTCGATGCCATGTCCCAGACATGGTCTTACATTGACTATCAAAATAGCG
* * * * * **
70287410 GCCGATGCCATGTCCTAGACATGGTCTTACATTGCCTCTC-ACATCTCCG
1 GTCGATGCCATGTCCCAGACATGGTCTTACATTGACTATCAAAAT-AGCG
70287459 CGTCGATGCCATGTCCCAGACATGGTCTTACATTGAC
1 -GTCGATGCCATGTCCCAGACATGGTCTTACATTGAC
70287496 GCATCTCATA
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
48 3 0.04
49 37 0.51
50 33 0.45
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACATTGACTATCAAAATAGCG
Found at i:70287488 original size:99 final size:96
Alignment explanation
Indices: 70287315--70287495 Score: 265
Period size: 96 Copynumber: 1.9 Consensus size: 96
70287305 GGGTGTAATA
* *
70287315 CCGATGCCACGTCTTAGACATGGTCTTACATTGGCTCATCCATCAAGTCGATGACATGTCCCAGA
1 CCGATGCCACGTCCTAGACATGGTCTTACATTGCCTCATCCATCAAGTCGATGACATGTCCCAGA
70287380 CATGGTCTTACATTGACTATCAAAATAGCGG
66 CATGGTCTTACATTGACTATCAAAATAGCGG
* ** *
70287411 CCGATGCCATGTCCTAGACATGGTCTTACATTGCCTC-TCACATCTCCGCGTCGATGCCATGTCC
1 CCGATGCCACGTCCTAGACATGGTCTTACATTGCCTCATC-CA--T-CAAGTCGATGACATGTCC
70287475 CAGACATGGTCTTACATTGAC
62 CAGACATGGTCTTACATTGAC
70287496 GCATCTCATA
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
95 2 0.03
96 36 0.48
98 1 0.01
99 36 0.48
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (96 bp):
CCGATGCCACGTCCTAGACATGGTCTTACATTGCCTCATCCATCAAGTCGATGACATGTCCCAGA
CATGGTCTTACATTGACTATCAAAATAGCGG
Found at i:70287507 original size:99 final size:93
Alignment explanation
Indices: 70287311--70287537 Score: 248
Period size: 96 Copynumber: 2.4 Consensus size: 93
70287301 CATAGGGTGT
* * *
70287311 AATA-CCGATGCCACGTCTTAGACATGGTCTTACATTGGCTCATCCATCAAGTCGATGACATGTC
1 AATAGCCGATGCCATGTCCTAGACATGGTCTTACATTGCCTCATCCATCAAGTCGATGACATGTC
*
70287375 CCAGACATGGTCTTACATTGACTATCAA
66 CCAGACATGGTCTTACATTGACCATCAA
**
70287403 AATAGCGGCCGATGCCATGTCCTAGACATGGTCTTACATTGCCTC-TCACATCTCCGCGTCGATG
1 AATA---GCCGATGCCATGTCCTAGACATGGTCTTACATTGCCTCATC-CA--T-CAAGTCGATG
* *
70287467 CCATGTCCCAGACATGGTCTTACATTGACGCATC-T
59 ACATGTCCCAGACATGGTCTTACATTGAC-CATCAA
* * *
70287502 CATAGCCGATG-CATGTCCCAGAGAT-GTCTTACATTG
1 AATAGCCGATGCCATGTCCTAGACATGGTCTTACATTG
70287538 GCTTACATCT
Statistics
Matches: 115, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
92 4 0.03
94 11 0.10
95 14 0.12
96 43 0.37
98 1 0.01
99 39 0.34
100 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (93 bp):
AATAGCCGATGCCATGTCCTAGACATGGTCTTACATTGCCTCATCCATCAAGTCGATGACATGTC
CCAGACATGGTCTTACATTGACCATCAA
Found at i:70289618 original size:18 final size:19
Alignment explanation
Indices: 70289590--70289628 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
70289580 AATTGATTTT
70289590 TTTTATCAAAAATCA-AATA
1 TTTTATCAAAAA-CAGAATA
70289609 TTTT-TCAAAAACAGAATA
1 TTTTATCAAAAACAGAATA
70289627 TT
1 TT
70289629 CTTAATCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 13 0.68
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.03, T:0.38
Consensus pattern (19 bp):
TTTTATCAAAAACAGAATA
Found at i:70290972 original size:22 final size:22
Alignment explanation
Indices: 70290944--70290987 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
70290934 GAGGACACAC
*
70290944 GGCCTAATAACACACCCATGTA
1 GGCCTAACAACACACCCATGTA
**
70290966 GGCCTAACAACATGCCCATGTA
1 GGCCTAACAACACACCCATGTA
70290988 CTAAGTTGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.18
Consensus pattern (22 bp):
GGCCTAACAACACACCCATGTA
Found at i:70291916 original size:57 final size:58
Alignment explanation
Indices: 70291822--70291964 Score: 168
Period size: 57 Copynumber: 2.5 Consensus size: 58
70291812 TATCAAATAA
* * *
70291822 CAGGATTACTTGTCCAAGCTAAAT-CTTGTTTCCAACATATGCTCATA-AAAGCTTA-AT
1 CAGGATTACCTGTCCAGGCTAAATCCTTCTTT-CAACATATGCTCA-AGAAAGCTTATAT
**
70291879 CAGGATTACCTGTCCAGGCTAAATCCTATCTTT-AACATATGCTCAAGAGGGCTTATAT
1 CAGGATTACCTGTCCAGGCTAAATCCT-TCTTTCAACATATGCTCAAGAAAGCTTATAT
* *
70291937 CAGGATTACCAGTCTAGGCTAAATCCTT
1 CAGGATTACCTGTCCAGGCTAAATCCTT
70291965 TCTGTAGTGA
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
56 1 0.01
57 41 0.55
58 29 0.39
59 4 0.05
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (58 bp):
CAGGATTACCTGTCCAGGCTAAATCCTTCTTTCAACATATGCTCAAGAAAGCTTATAT
Found at i:70291960 original size:58 final size:57
Alignment explanation
Indices: 70291855--70291963 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 57
70291845 TCTTGTTTCC
*
70291855 AACATATGCTCATAAAAGCTTAATCAGGATTACCTGTCCAGGCTAAATCCTATCTTT
1 AACATATGCTCATAAAAGCTTAATCAGGATTACCAGTCCAGGCTAAATCCTATCTTT
** *
70291912 AACATATGCTCA-AGAGGGCTTATATCAGGATTACCAGTCTAGGCTAAATCCT
1 AACATATGCTCATA-AAAGCTTA-ATCAGGATTACCAGTCCAGGCTAAATCCT
70291964 TTCTGTAGTG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
56 1 0.02
57 18 0.39
58 27 0.59
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (57 bp):
AACATATGCTCATAAAAGCTTAATCAGGATTACCAGTCCAGGCTAAATCCTATCTTT
Found at i:70309529 original size:28 final size:28
Alignment explanation
Indices: 70309489--70309642 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
70309479 TAAATTGTAC
70309489 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
70309517 AGCACTAAGTGTGCGAATTTGATTAGGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70309545 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70309573 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70309601 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
**
70309628 AGCACCGAGTGTGCG
1 AGCACTAAGTGTGCG
70309643 GACTTAATAT
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
27 23 0.19
28 96 0.81
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:70312204 original size:9 final size:9
Alignment explanation
Indices: 70312190--70312248 Score: 84
Period size: 9 Copynumber: 6.6 Consensus size: 9
70312180 TTTATACAAA
70312190 TAATTCGGT
1 TAATTCGGT
70312199 TAATTCGGT
1 TAATTCGGT
* *
70312208 TAATTTGGG
1 TAATTCGGT
70312217 TAATTCAGG-
1 TAATTC-GGT
70312226 TAATTCGGT
1 TAATTCGGT
70312235 TAATTCGGT
1 TAATTCGGT
70312244 TAATT
1 TAATT
70312249 TTGTACTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
8 2 0.04
9 41 0.91
10 2 0.04
ACGTcount: A:0.25, C:0.08, G:0.22, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:70315848 original size:18 final size:18
Alignment explanation
Indices: 70315822--70315856 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70315812 ATGATTTGCC
*
70315822 AAACTATTTTCATGCTTG
1 AAACCATTTTCATGCTTG
*
70315840 AAACCATTTTGATGCTT
1 AAACCATTTTCATGCTT
70315857 CTTATTTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (18 bp):
AAACCATTTTCATGCTTG
Found at i:70319092 original size:27 final size:27
Alignment explanation
Indices: 70319031--70319107 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
70319021 CTCATATCTG
* * * *
70319031 TAGGCTAGCATTACTGAAATACCCTTG
1 TAGGGTAGAATTACTGAAATACCCCTA
* *
70319058 TAGAGTAGAATTACTGAAATGCCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
**
70319085 TAGGGTAGAATTACCAAAATACC
1 TAGGGTAGAATTACTGAAATACC
70319108 ATTGGTTTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCCTA
Found at i:70319123 original size:27 final size:27
Alignment explanation
Indices: 70319093--70319216 Score: 176
Period size: 27 Copynumber: 4.6 Consensus size: 27
70319083 TATAGGGTAG
** *
70319093 AATTACCAAAATACCATTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
70319120 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
70319147 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * *
70319174 AATTACCAAAATACCTCTGATTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
**
70319201 AATTACTGAAATACCC
1 AATTACCAAAATACCC
70319217 TCGACCTGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:70319124 original size:54 final size:54
Alignment explanation
Indices: 70319074--70319194 Score: 145
Period size: 54 Copynumber: 2.2 Consensus size: 54
70319064 AGAATTACTG
* * *
70319074 AAATGCCCCT-ATAGGGTAGAATTACCAAAATACCATTGGTTTATAAAATTACCA
1 AAATACCCCTGAT-GGGTAAAATTACCAAAATACCACTGGTTTATAAAATTACCA
* ** * *
70319128 AAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCCTGATGGGTAAAATTACCAAAATACCACTGGTTTATAAAATTACCA
*
70319182 AAATACCTCTGAT
1 AAATACCCCTGAT
70319195 TTGTGAAATT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 55 0.98
55 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.29
Consensus pattern (54 bp):
AAATACCCCTGATGGGTAAAATTACCAAAATACCACTGGTTTATAAAATTACCA
Found at i:70319227 original size:54 final size:54
Alignment explanation
Indices: 70319117--70319232 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
70319107 CATTGGTTTA
* ***
70319117 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGACCTG
* * **
70319171 TAAAATTACCAAAATACCTCTGATTTGTGAAATTACTGAAATA-CCCTCGACCTG
1 TAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCT-GACCTG
70319225 TAAAATTA
1 TAAAATTA
70319233 TTGAAATACC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 4 0.08
54 49 0.92
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGACCTG
Found at i:70319230 original size:27 final size:27
Alignment explanation
Indices: 70319141--70319259 Score: 107
Period size: 27 Copynumber: 4.4 Consensus size: 27
70319131 TACCCCTGGT
** **
70319141 TTGTAAAATTACCAAAATACCC-CTGGT
1 TTGTAAAATTACTGAAATACCCTC-GAC
** *
70319168 TTGTAAAATTACCAAAATA-CCTCTGAT
1 TTGTAAAATTACTGAAATACCCTC-GAC
*
70319195 TTGTGAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
* * *
70319222 CTGTAAAATTATTGAAATACCTTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
70319249 TTGTAAAATTA
1 TTGTAAAATTA
70319260 TCGTTTTACC
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.03
27 74 0.93
28 4 0.05
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAC
Found at i:70319269 original size:27 final size:27
Alignment explanation
Indices: 70319252--70319567 Score: 337
Period size: 27 Copynumber: 11.7 Consensus size: 27
70319242 CTTCGACTTG
* *
70319252 TAAAATTATCGTTTTACCCTTGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
* * *
70319279 TAGAATTACCATTTTACCCTTGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
* * * *
70319306 TAGAATTATCATTTTACCCTTGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
* * * *
70319333 CAGAATTACTGTTTTACCCTCAATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
* * *
70319360 CAAAATTATCATTTTACCCTCGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
* *
70319387 CAAAATTACCGTTTTACCTTCGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
* *
70319414 CAGAATTACCGTTTTACCCTCGA-TTA
1 TAAAATTACCGTTTTACCCTCGATTTA
* * ** *
70319440 CAGAATTACTATTTTACCCTCAATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
*
70319467 TAAAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
* * *
70319494 CAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
* *
70319521 TAGAATTATCGTTTTACCCTCGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTA
*
70319548 TAAAATTACCATTTTACCCT
1 TAAAATTACCGTTTTACCCT
70319568 TAGGGTGTTA
Statistics
Matches: 251, Mismatches: 37, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
26 23 0.09
27 228 0.91
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
TAAAATTACCGTTTTACCCTCGATTTA
Found at i:70319313 original size:54 final size:54
Alignment explanation
Indices: 70319255--70319567 Score: 394
Period size: 54 Copynumber: 5.8 Consensus size: 54
70319245 CGACTTGTAA
* * * *
70319255 AATTATCGTTTTACCCTTGATTTATAGAATTACCATTTTACCCTTGATTTATAG
1 AATTATCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
* ** * * *
70319309 AATTATCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCAATTTACAA
1 AATTATCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
* * * *
70319363 AATTATCATTTTACCCTCGATTTACAAAATTACCGTTTTACCTTCGATTTACAG
1 AATTATCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
* * * * *
70319417 AATTACCGTTTTACCCTCGA-TTACAGAATTACTATTTTACCCTCAATTTATAA
1 AATTATCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
* **
70319470 AATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAG
1 AATTATCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
* * *
70319524 AATTATCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCT
1 AATTATCATTTTACCCTCGATTTACAGAATTACCATTTTACCCT
70319568 TAGGGTGTTA
Statistics
Matches: 225, Mismatches: 33, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
53 45 0.20
54 180 0.80
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (54 bp):
AATTATCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
Found at i:70319566 original size:81 final size:81
Alignment explanation
Indices: 70319262--70319567 Score: 445
Period size: 81 Copynumber: 3.8 Consensus size: 81
70319252 TAAAATTATC
* * * * * * *
70319262 GTTTTACCCTTGATTTATAGAATTACCATTTTACCCTTGATTTATAGAATTATCATTTTACCCTT
1 GTTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTC
70319327 GATTTACAGAATTACT
66 GATTTACAGAATTACT
* * * * *
70319343 GTTTTACCCTCAATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCGTTTTACCTTC
1 GTTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTC
*
70319408 GATTTACAGAATTACC
66 GATTTACAGAATTACT
*
70319424 GTTTTACCCTCGA-TTACAGAATTA-CTATTTTACCCTCAATTTATAAAATTACCATTTTACCCT
1 GTTTTACCCTCGATTTACAGAATTATC-ATTTTACCCTCGATTTATAAAATTACCATTTTACCCT
70319487 CGATTTACAGAATTACT
65 CGATTTACAGAATTACT
* *
70319504 GTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCT
1 GTTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAAAATTACCATTTTACCCT
70319568 TAGGGTGTTA
Statistics
Matches: 199, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
79 1 0.01
80 72 0.36
81 125 0.63
82 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.42
Consensus pattern (81 bp):
GTTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTC
GATTTACAGAATTACT
Found at i:70319847 original size:27 final size:26
Alignment explanation
Indices: 70319803--70319854 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70319793 CTCGCTGCAA
70319803 TCTGGTGACCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* * *
70319830 TCTGGTGACTTTGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
70319855 GCAGTCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:70319934 original size:27 final size:26
Alignment explanation
Indices: 70319893--70319952 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
70319883 CCACATATAT
* *
70319893 ATATCTGCTCTGGTGGCCTAGCCACA
1 ATATCTGATCTGGTGACCTAGCCACA
* * *
70319919 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTG-ATCTGGTGACCTAGCCACA
70319946 ATATCTG
1 ATATCTG
70319953 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
ATATCTGATCTGGTGACCTAGCCACA
Found at i:70320113 original size:31 final size:31
Alignment explanation
Indices: 70320075--70320180 Score: 101
Period size: 31 Copynumber: 3.4 Consensus size: 31
70320065 ATTCACATTC
70320075 TGATTTTGATTCTGTTACCTGATACTGATTT
1 TGATTTTGATTCTGTTACCTGATACTGATTT
* *
70320106 TGATTTTGATTCTAATT--CTG-TCACCTAATTT
1 TGATTTTGATTCT-GTTACCTGAT-A-CTGATTT
* * * *
70320137 TGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTTTGATTCTGTTACCTGATACTGATTT
*
70320168 TCATTTTGATTCT
1 TGATTTTGATTCT
70320181 AGTTCTGATA
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
29 1 0.02
30 5 0.08
31 47 0.80
32 5 0.08
33 1 0.02
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (31 bp):
TGATTTTGATTCTGTTACCTGATACTGATTT
Found at i:70320142 original size:25 final size:25
Alignment explanation
Indices: 70320108--70320168 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
70320098 ACTGATTTTG
70320108 ATTTTGATTCTAATTCTGTCACCTA
1 ATTTTGATTCTAATTCTGTCACCTA
* *
70320133 ATTTTGATTCTGATTCTGTCACCTG
1 ATTTTGATTCTAATTCTGTCACCTA
*
70320158 ATTCTGATTCT
1 ATTTTGATTCT
70320169 CATTTTGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (25 bp):
ATTTTGATTCTAATTCTGTCACCTA
Found at i:70321930 original size:16 final size:16
Alignment explanation
Indices: 70321909--70321940 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
70321899 ATTGTAACAC
*
70321909 CCCAAAAATCTTGAAA
1 CCCAAAAATCCTGAAA
70321925 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
70321941 TCCTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CCCAAAAATCCTGAAA
Found at i:70323220 original size:8 final size:8
Alignment explanation
Indices: 70323207--70323277 Score: 142
Period size: 8 Copynumber: 8.9 Consensus size: 8
70323197 ATCAGCAAAA
70323207 GCCGAAAT
1 GCCGAAAT
70323215 GCCGAAAT
1 GCCGAAAT
70323223 GCCGAAAT
1 GCCGAAAT
70323231 GCCGAAAT
1 GCCGAAAT
70323239 GCCGAAAT
1 GCCGAAAT
70323247 GCCGAAAT
1 GCCGAAAT
70323255 GCCGAAAT
1 GCCGAAAT
70323263 GCCGAAAT
1 GCCGAAAT
70323271 GCCGAAA
1 GCCGAAA
70323278 AGCCAAAAGT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 63 1.00
ACGTcount: A:0.38, C:0.25, G:0.25, T:0.11
Consensus pattern (8 bp):
GCCGAAAT
Found at i:70323532 original size:28 final size:28
Alignment explanation
Indices: 70323496--70323553 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
70323486 GAATATGAAT
* *
70323496 GTGACTGGGCCTAATGGGCCATATATAG
1 GTGACTGGGCCTAATGGGCCAAATACAG
* *
70323524 GTGATTGGGCTTAATGGGCCAAATACAG
1 GTGACTGGGCCTAATGGGCCAAATACAG
70323552 GT
1 GT
70323554 ATGTGAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (28 bp):
GTGACTGGGCCTAATGGGCCAAATACAG
Found at i:70325186 original size:48 final size:48
Alignment explanation
Indices: 70325099--70325196 Score: 108
Period size: 48 Copynumber: 2.0 Consensus size: 48
70325089 GGTCTACATA
* * *
70325099 CCGATGCCATATCCCAGATATGGTCTTATACAAAGCCTCATGTCGGTG
1 CCGATGCCATATCCCAGACATGGTCTTATACAAAGCCTCATATCGATG
* * * **
70325147 CCGATGCCATGTCCTAGACATGGTCTTTTAC-GGGACCTCATATCGATG
1 CCGATGCCATATCCCAGACATGGTCTTATACAAAG-CCTCATATCGATG
70325195 CC
1 CC
70325197 ATGTCCCAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
47 1 0.02
48 40 0.98
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (48 bp):
CCGATGCCATATCCCAGACATGGTCTTATACAAAGCCTCATATCGATG
Found at i:70325290 original size:48 final size:47
Alignment explanation
Indices: 70325237--70325407 Score: 157
Period size: 48 Copynumber: 3.6 Consensus size: 47
70325227 CATATCAACA
*
70325237 CCATATCCCAGATATGGTCTTACA-TGAAATCACATACCGAGGCCGATG
1 CCATATCCCAGATATGGTCTTACACTG-AATCACATACC-ACGCCGATG
* * *
70325285 CCATATCCCAGATATGGTCTTACACTGGCA-CACATATCAATGCCGATG
1 CCATATCCCAGATATGGTCTTACACT-GAATCACATA-CCACGCCGATG
* ** * ** * * *
70325333 CCATGTCCTGGACATGGTCTTACACTGGCTCTCATATCCACACTGATG
1 CCATATCCCAGATATGGTCTTACACTGAATCACATA-CCACGCCGATG
*
70325381 CCATGTCCCAGATATGGTCTTACACTG
1 CCATATCCCAGATATGGTCTTACACTG
70325408 GCTCTCATGA
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
47 1 0.01
48 97 0.95
49 3 0.03
50 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (47 bp):
CCATATCCCAGATATGGTCTTACACTGAATCACATACCACGCCGATG
Found at i:70325408 original size:48 final size:48
Alignment explanation
Indices: 70325279--70325415 Score: 184
Period size: 48 Copynumber: 2.9 Consensus size: 48
70325269 CATACCGAGG
* * * **
70325279 CCGATGCCATATCCCAGATATGGTCTTACACTGGCACACATATCAATG
1 CCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATATCAACA
** * *
70325327 CCGATGCCATGTCCTGGACATGGTCTTACACTGGCTCTCATATCCACA
1 CCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATATCAACA
*
70325375 CTGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCAT
1 CCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCAT
70325416 GAATCGTGGT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATATCAACA
Found at i:70328599 original size:37 final size:37
Alignment explanation
Indices: 70328540--70328648 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
70328530 AGCTCAGACG
* * *
70328540 AAATCTCCACACGAAGTTATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
70328577 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
70328614 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
70328649 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:70328913 original size:47 final size:47
Alignment explanation
Indices: 70328859--70328976 Score: 218
Period size: 47 Copynumber: 2.5 Consensus size: 47
70328849 TTTCACCTTA
70328859 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTG
*
70328906 GCCATTCGGCCTTAACACATATATGCATGTTCATATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTG
*
70328953 GCCATTCGGCCTTATCGCATATAT
1 GCCATTCGGCCTTATCACATATAT
70328977 ACACATAAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCACATTG
Found at i:70332210 original size:14 final size:14
Alignment explanation
Indices: 70332191--70332238 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
70332181 GTGTGCCTAA
70332191 TTCTCTGTTTCCTT
1 TTCTCTGTTTCCTT
* *
70332205 TTCTCT-TGTCCTAA
1 TTCTCTGTTTCCT-T
70332219 TTCTCTGTTTCCTT
1 TTCTCTGTTTCCTT
70332233 TTCTCT
1 TTCTCT
70332239 TGTGTTTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 5 0.18
14 18 0.64
15 5 0.18
ACGTcount: A:0.04, C:0.29, G:0.06, T:0.60
Consensus pattern (14 bp):
TTCTCTGTTTCCTT
Found at i:70332218 original size:28 final size:28
Alignment explanation
Indices: 70332186--70332241 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
70332176 TCCTTGTGTG
70332186 CCTAATTCTCTGTTTCCTTTTCTCTTGT
1 CCTAATTCTCTGTTTCCTTTTCTCTTGT
70332214 CCTAATTCTCTGTTTCCTTTTCTCTTGT
1 CCTAATTCTCTGTTTCCTTTTCTCTTGT
70332242 GTTTCTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.07, C:0.29, G:0.07, T:0.57
Consensus pattern (28 bp):
CCTAATTCTCTGTTTCCTTTTCTCTTGT
Found at i:70333431 original size:27 final size:27
Alignment explanation
Indices: 70333393--70333496 Score: 163
Period size: 27 Copynumber: 3.9 Consensus size: 27
70333383 GACCTTGGTT
70333393 TGTAAAATTACCAAAATACCCCTGTAG
1 TGTAAAATTACCAAAATACCCCTGTAG
* *
70333420 TGTAAAATTACCGAAATACCCCTATAG
1 TGTAAAATTACCAAAATACCCCTGTAG
* *
70333447 TGTAAAATTACTAAAATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCCTGTAG
*
70333474 TGTAAAATTACCGAAATACCCCT
1 TGTAAAATTACCAAAATACCCCT
70333497 ATAGGGCAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTGTAG
Found at i:70333457 original size:54 final size:54
Alignment explanation
Indices: 70333393--70333500 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
70333383 GACCTTGGTT
70333393 TGTAAAATTACCAAAATACCCCTGTAGTGTAAAATTACCGAAATACCCCTATAG
1 TGTAAAATTACCAAAATACCCCTGTAGTGTAAAATTACCGAAATACCCCTATAG
* *
70333447 TGTAAAATTACTAAAATACCCTTGTAGTGTAAAATTACCGAAATACCCCTATAG
1 TGTAAAATTACCAAAATACCCCTGTAGTGTAAAATTACCGAAATACCCCTATAG
70333501 GGCAAAATGA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (54 bp):
TGTAAAATTACCAAAATACCCCTGTAGTGTAAAATTACCGAAATACCCCTATAG
Found at i:70333508 original size:54 final size:54
Alignment explanation
Indices: 70333396--70333513 Score: 191
Period size: 54 Copynumber: 2.2 Consensus size: 54
70333386 CTTGGTTTGT
* * *
70333396 AAAATTACCAAAATACCCCTGTAGTGTAAAATTACCGAAATACCCCTATAGTGT
1 AAAATTACTAAAATACCCCTGTAGTGTAAAATTACCGAAATACCCCTATAGGGC
*
70333450 AAAATTACTAAAATACCCTTGTAGTGTAAAATTACCGAAATACCCCTATAGGGC
1 AAAATTACTAAAATACCCCTGTAGTGTAAAATTACCGAAATACCCCTATAGGGC
*
70333504 AAAATGACTA
1 AAAATTACTA
70333514 TTTTGCCCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.25
Consensus pattern (54 bp):
AAAATTACTAAAATACCCCTGTAGTGTAAAATTACCGAAATACCCCTATAGGGC
Found at i:70343116 original size:27 final size:26
Alignment explanation
Indices: 70343086--70343220 Score: 112
Period size: 27 Copynumber: 5.0 Consensus size: 26
70343076 AAAACCCTAA
70343086 TTTGTAAAATTATCGAAATACCCCTG
1 TTTGTAAAATTATCGAAATACCCCTG
* *
70343112 ATTTGTAAAATTA-CCAACATACCCCCG
1 -TTTGTAAAATTATCGAA-ATACCCCTG
*
70343139 TTCTGTAAAATTAGT-AAAATACCCCTG
1 TT-TGTAAAATTA-TCGAAATACCCCTG
* * * *
70343166 TACTATAAAATTACCGAAATACCCTTG
1 T-TTGTAAAATTATCGAAATACCCCTG
* * *
70343193 TAGTGTAAAATTTTTGAAATACCCCTG
1 T-TTGTAAAATTATCGAAATACCCCTG
70343220 T
1 T
70343221 ATGGAAAAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
26 5 0.06
27 80 0.92
28 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (26 bp):
TTTGTAAAATTATCGAAATACCCCTG
Done.