Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 215 of 316
Found at i:70343230 original size:54 final size:54
Alignment explanation
Indices: 70343088--70343230 Score: 132
Period size: 54 Copynumber: 2.6 Consensus size: 54
70343078 AACCCTAATT
* * * *
70343088 TGTAAAATTATCGAAATACCCCTG-ATTTGTAAAATTACCAACATACCCCCGTTC
1 TGTAAAATTATTGAAATACCCCTGTA-CTGAAAAATTACCAACATACCCCCGTAC
* * ** *
70343142 TGTAAAATTAGTAAAATACCCCTGTACT-ATAAAATTACCGAA-ATACCCTTGTAG
1 TGTAAAATTATTGAAATACCCCTGTACTGA-AAAATTACC-AACATACCCCCGTAC
*
70343196 TGTAAAATTTTTGAAATACCCCTGTA-TGGAAAAAT
1 TGTAAAATTATTGAAATACCCCTGTACT-GAAAAAT
70343231 GACTGTTTTG
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
53 1 0.01
54 67 0.93
55 4 0.06
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (54 bp):
TGTAAAATTATTGAAATACCCCTGTACTGAAAAATTACCAACATACCCCCGTAC
Found at i:70343763 original size:32 final size:32
Alignment explanation
Indices: 70343721--70343783 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
70343711 CCCATGGTTG
*
70343721 TGTGCCGATCATATTACAGCTACTGATGGCTT
1 TGTGCCGATCAAATTACAGCTACTGATGGCTT
* *
70343753 TGTGTCGATCAAATTACCGCTACTGATGGCT
1 TGTGCCGATCAAATTACAGCTACTGATGGCT
70343784 GTAACTCGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (32 bp):
TGTGCCGATCAAATTACAGCTACTGATGGCTT
Found at i:70346803 original size:13 final size:13
Alignment explanation
Indices: 70346785--70346809 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70346775 TGTTTCTTTC
70346785 TCTTTTCTTCCTT
1 TCTTTTCTTCCTT
70346798 TCTTTTCTTCCT
1 TCTTTTCTTCCT
70346810 CAATTTTTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (13 bp):
TCTTTTCTTCCTT
Found at i:70351373 original size:21 final size:21
Alignment explanation
Indices: 70351349--70351394 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
70351339 TGAATCGGTT
70351349 TTTCATTCATTCAATCACGTA
1 TTTCATTCATTCAATCACGTA
70351370 TTTCATTCATTCAATCACGTA
1 TTTCATTCATTCAATCACGTA
70351391 TTTC
1 TTTC
70351395 TTAGAATGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.24, G:0.04, T:0.46
Consensus pattern (21 bp):
TTTCATTCATTCAATCACGTA
Found at i:70351569 original size:42 final size:42
Alignment explanation
Indices: 70351500--70351619 Score: 116
Period size: 44 Copynumber: 2.8 Consensus size: 42
70351490 TAATCAAATG
* * * * *
70351500 TCGATGCCACTGTCCCAAACAGGGTCTTACACGAA-GTCAAA
1 TCGATACCAATGTCCCAGACATGGTCTTACACGAATCTCAAA
* *
70351541 TACGATATCGATGTCCCAGACATGGTCTTACACGTAAATCTCAAA
1 T-CGATACCAATGTCCCAGACATGGTCTTACACG--AATCTCAAA
* **
70351586 TCGATGCCAACATCCCAGACATGGTCTTACACGA
1 TCGATACCAATGTCCCAGACATGGTCTTACACGA
70351620 TAACTCATAT
Statistics
Matches: 63, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
41 1 0.02
42 27 0.43
44 29 0.46
45 6 0.10
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
TCGATACCAATGTCCCAGACATGGTCTTACACGAATCTCAAA
Found at i:70358479 original size:46 final size:46
Alignment explanation
Indices: 70358429--70358554 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
70358419 TGGTTGAGCA
* *
70358429 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
70358475 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
70358521 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70358555 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:70360304 original size:43 final size:43
Alignment explanation
Indices: 70360163--70360324 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 43
70360153 CGCATCCACA
* * * * ** *
70360163 ATGAACTCGGACCACTCAACGAGCTTAG-GTGCTCGCATCCATA
1 ATGAACTTGGACCACTCAACGAGCTCAGAATGCT-ACATATATC
* *
70360206 ATGAACTCGGACCACTCAACGAGCTC-GAATGCTACATATCTC
1 ATGAACTTGGACCACTCAACGAGCTCAGAATGCTACATATATC
* * *
70360248 ACGAACTTGGACCACTCAACAAGTTCAGAAT-CT-CATACATATC
1 ATGAACTTGGACCACTCAACGAGCTCAGAATGCTACAT--ATATC
*
70360291 ATGAACTTGGACCACTCAACGAGCTCAGATTGCT
1 ATGAACTTGGACCACTCAACGAGCTCAGAATGCT
70360325 TAATTCCTAG
Statistics
Matches: 98, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
41 3 0.03
42 29 0.30
43 64 0.65
44 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
ATGAACTTGGACCACTCAACGAGCTCAGAATGCTACATATATC
Found at i:70362032 original size:17 final size:17
Alignment explanation
Indices: 70362010--70362044 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
70362000 GTTCAACTGA
70362010 TGATAATCAATATACAT
1 TGATAATCAATATACAT
70362027 TGATAATCAATATACAT
1 TGATAATCAATATACAT
70362044 T
1 T
70362045 CTCATCGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (17 bp):
TGATAATCAATATACAT
Found at i:70371046 original size:72 final size:72
Alignment explanation
Indices: 70370929--70371070 Score: 230
Period size: 72 Copynumber: 2.0 Consensus size: 72
70370919 AAGTTCTTCA
* * *
70370929 TCAATCAACTAGTCGCTACCCTAGTAGGATCTTCCACTAGCATAACGAGTAAACAAGAATTACTA
1 TCAATCAACTAGTCGCTACCCTAATAGGATCTTCCACTAACATAACAAGTAAACAAGAATTACTA
70370994 ATCTTTG
66 ATCTTTG
* * *
70371001 TCAATCAACTAGTCGCTACCCTAATAGGATCTTCGACTAACATAACAAGTAAGCAAGAATTACTT
1 TCAATCAACTAGTCGCTACCCTAATAGGATCTTCCACTAACATAACAAGTAAACAAGAATTACTA
70371066 ATCTT
66 ATCTT
70371071 CTGACCTCAC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (72 bp):
TCAATCAACTAGTCGCTACCCTAATAGGATCTTCCACTAACATAACAAGTAAACAAGAATTACTA
ATCTTTG
Found at i:70371291 original size:13 final size:13
Alignment explanation
Indices: 70371273--70371297 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70371263 TATGTGATAT
70371273 GTGTGAAAATTTC
1 GTGTGAAAATTTC
70371286 GTGTGAAAATTT
1 GTGTGAAAATTT
70371298 TATTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:70372553 original size:43 final size:43
Alignment explanation
Indices: 70372381--70372553 Score: 115
Period size: 43 Copynumber: 4.0 Consensus size: 43
70372371 ACATAGGATT
* * * *
70372381 TCGATATGTGATTTCATGTAAAACCACATCTGGGACGTTGGCA
1 TCGATATTTGATTACATGTAAGACCTCATCTGGGACGTTGGCA
* * * *
70372424 TCGAT-TTGAGATTTACGA-GTAAGACCAT-GTCTGGGACATTAGCA
1 TCGATATT-TGA-TTAC-ATGTAAGACC-TCATCTGGGACGTTGGCA
* * * * * * *
70372468 TCG-TATATGGTTTCGTGTAAGACC-CTGTCTGGGATAG-CGGCA
1 TCGATATTTGATTACATGTAAGACCTC-ATCTGGGA-CGTTGGCA
70372510 TCGATATTTGATTACATGTAAGACCTCATCTGGGACGTTGGCA
1 TCGATATTTGATTACATGTAAGACCTCATCTGGGACGTTGGCA
70372553 T
1 T
70372554 TGTATGAGTT
Statistics
Matches: 94, Mismatches: 24, Indels: 24
0.66 0.17 0.17
Matches are distributed among these distances:
42 27 0.29
43 38 0.40
44 28 0.30
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCTCATCTGGGACGTTGGCA
Found at i:70376949 original size:25 final size:25
Alignment explanation
Indices: 70376921--70376970 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
70376911 GAATTGAATA
70376921 TAGCATGGAATGATTTATTACGAGC
1 TAGCATGGAATGATTTATTACGAGC
70376946 TAGCATGGAATGATTTATTACGAGC
1 TAGCATGGAATGATTTATTACGAGC
70376971 ATGAATCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (25 bp):
TAGCATGGAATGATTTATTACGAGC
Found at i:70377178 original size:42 final size:43
Alignment explanation
Indices: 70377105--70377209 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 43
70377095 GATTTGAGAT
* *
70377105 TTACGTGTAAGACCATGTCTGAGACATTGGCATAG-TATATGA
1 TTACATGTAAGACCATGTCTGAGACAGTGGCATAGATATATGA
* * * * * *
70377147 TTTCATGTAAGACCCTGTTTGGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGAGACAGTGGCATAGATATATGA
*
70377190 TTACATGTAAGACCACGTCT
1 TTACATGTAAGACCATGTCT
70377210 TGGATGTTGG
Statistics
Matches: 50, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 28 0.56
43 22 0.44
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGAGACAGTGGCATAGATATATGA
Found at i:70377221 original size:43 final size:43
Alignment explanation
Indices: 70377066--70377222 Score: 119
Period size: 43 Copynumber: 3.7 Consensus size: 43
70377056 TGAAATTTCG
* * * * *
70377066 TGTAACACCACGTCTGGGACGTTGGCAACGAT-TTGAGATTTACG
1 TGTAAGACCACGTCTTGGACGTTGGCATCGATATT-TGA-TTACA
* * * * *
70377110 TGTAAGACCATGTC-TGAGACATTGGCATAG-TATATGATTTCA
1 TGTAAGACCACGTCTTG-GACGTTGGCATCGATATTTGATTACA
70377152 TGTAAGACC-CTGT-TTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTT-GGAC-GTTGGCATCGATATTTGATTACA
*
70377195 TGTAAGACCACGTCTTGGATGTTGGCAT
1 TGTAAGACCACGTCTTGGACGTTGGCAT
70377223 TGTATGAGCT
Statistics
Matches: 87, Mismatches: 16, Indels: 21
0.70 0.13 0.17
Matches are distributed among these distances:
42 26 0.30
43 35 0.40
44 26 0.30
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTTGGACGTTGGCATCGATATTTGATTACA
Found at i:70379646 original size:12 final size:12
Alignment explanation
Indices: 70379629--70379658 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
70379619 CACAGATTTG
70379629 ACACGGCCTAGT
1 ACACGGCCTAGT
70379641 ACACGGCCTAGT
1 ACACGGCCTAGT
*
70379653 ATACGG
1 ACACGG
70379659 GCATGTATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.17
Consensus pattern (12 bp):
ACACGGCCTAGT
Found at i:70380005 original size:41 final size:41
Alignment explanation
Indices: 70379960--70380084 Score: 95
Period size: 41 Copynumber: 3.1 Consensus size: 41
70379950 AAGGTCAATA
70379960 AAAGACTCAATGTGCACATTTTATTGGATGTAAGGAAAACT
1 AAAGACTCAATGTGCACATTTTATTGGATGTAAGGAAAACT
** * **
70380001 AAAGA---AACT-T--ACACCTTATTCAGCCAT-TAAGGTCAA-T
1 AAAGACTCAA-TGTGCACATTTTATT--G-GATGTAAGGAAAACT
*
70380038 AAAAGACTCAATGTGCACATTTTATTGGATGTAAGTAAAACT
1 -AAAGACTCAATGTGCACATTTTATTGGATGTAAGGAAAACT
70380080 AAAGA
1 AAAGA
70380085 AACTTACTTA
Statistics
Matches: 60, Mismatches: 11, Indels: 26
0.62 0.11 0.27
Matches are distributed among these distances:
36 8 0.13
37 1 0.02
38 16 0.27
39 3 0.05
40 3 0.05
41 20 0.33
42 1 0.02
43 8 0.13
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (41 bp):
AAAGACTCAATGTGCACATTTTATTGGATGTAAGGAAAACT
Found at i:70380066 original size:79 final size:79
Alignment explanation
Indices: 70379935--70380091 Score: 296
Period size: 79 Copynumber: 2.0 Consensus size: 79
70379925 CTCTTTTTGG
*
70379935 CCTTATTCAGCCCTTAAGGTCAATAAAAGACTCAATGTGCACATTTTATTGGATGTAAGGAAAAC
1 CCTTATTCAGCCATTAAGGTCAATAAAAGACTCAATGTGCACATTTTATTGGATGTAAGGAAAAC
70380000 TAAAGAAACTTACA
66 TAAAGAAACTTACA
*
70380014 CCTTATTCAGCCATTAAGGTCAATAAAAGACTCAATGTGCACATTTTATTGGATGTAAGTAAAAC
1 CCTTATTCAGCCATTAAGGTCAATAAAAGACTCAATGTGCACATTTTATTGGATGTAAGGAAAAC
70380079 TAAAGAAACTTAC
66 TAAAGAAACTTAC
70380092 TTAAAACATA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 76 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (79 bp):
CCTTATTCAGCCATTAAGGTCAATAAAAGACTCAATGTGCACATTTTATTGGATGTAAGGAAAAC
TAAAGAAACTTACA
Found at i:70381710 original size:18 final size:18
Alignment explanation
Indices: 70381683--70381718 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70381673 TAGAAAGTAT
*
70381683 AAACAGAATGCAACATAC
1 AAACAAAATGCAACATAC
70381701 AAACAAAATGCAACATAC
1 AAACAAAATGCAACATAC
70381719 TAAAATCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.22, G:0.08, T:0.11
Consensus pattern (18 bp):
AAACAAAATGCAACATAC
Found at i:70384605 original size:39 final size:38
Alignment explanation
Indices: 70384525--70384798 Score: 314
Period size: 39 Copynumber: 7.0 Consensus size: 38
70384515 AAATCGAATC
* * *
70384525 ACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAAT
1 ACCAGCACAAAGCCTTCGGGAC-TT-AGCCCGGATATAAT
*
70384565 ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
1 ACCAGCACAAAGCCTTCGGGAC-TTAGCCCGGATATAAT
* * * *
70384604 ACCAGCACGAATGCCTTCGGTACTTAGCCTGGATATAAC
1 ACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAAT
* *
70384643 GCCGGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
1 ACCAGCACAAA-GCCTTCGGGACTTAGCCCGGATATAAT
* ** *
70384682 ACCAGTACGAATTCCTTCGGGACTTAGCTCGGATATAAT
1 ACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAAT
**
70384721 ACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAAT
1 ACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAAT
* *
70384760 ACCAGCACAAATTCCTTCGGGACTTAACCCGGATATAAT
1 ACCAGCACAAA-GCCTTCGGGACTTAGCCCGGATATAAT
70384799 TCTTCATTAT
Statistics
Matches: 207, Mismatches: 23, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
38 4 0.02
39 167 0.81
40 36 0.17
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (38 bp):
ACCAGCACAAAGCCTTCGGGACTTAGCCCGGATATAAT
Found at i:70384685 original size:78 final size:78
Alignment explanation
Indices: 70384541--70384798 Score: 365
Period size: 78 Copynumber: 3.3 Consensus size: 78
70384531 ACAAAGCATG
*
70384541 CGGGACTTTAAGCCCGGATATAATACCAGCACAAA-GCCTGCGGGACTTTAGCCCGGATATAATA
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACAAATGCCTTCGGGAC-TTAGCCCGGATATAATA
*
70384605 CCAGCACGAATGCCTT
63 CCAGCACGAATTCCTT
* * ** *
70384621 CGGTACTTAGCCTGGATATAACGCCGGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
1 CGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
*
70384686 GTACGAATTCCTT
66 GCACGAATTCCTT
* * *
70384699 CGGGACTTAGCTCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAATACCA
1 CGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
*
70384764 GCACAAATTCCTT
66 GCACGAATTCCTT
*
70384777 CGGGACTTAACCCGGATATAAT
1 CGGGACTTAGCCCGGATATAAT
70384799 TCTTCATTAT
Statistics
Matches: 157, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
78 140 0.89
79 12 0.08
80 5 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (78 bp):
CGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
GCACGAATTCCTT
Found at i:70384757 original size:117 final size:117
Alignment explanation
Indices: 70384524--70384798 Score: 365
Period size: 117 Copynumber: 2.3 Consensus size: 117
70384514 CAAATCGAAT
* * *
70384524 CACCACCACAAA-GCATGCGGGACTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACT
1 CACCAGCACAAATGCCTTCGGGAC-TT-AGCCCGGATATAATACCAGCACAAAGCCTGCGGGACT
* *
70384588 TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGTACTTAGCCTGGATATAA
64 TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
* * * ** *
70384642 CGCCGGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGTACGAATTCCTTCGGGAC-T
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCAC-AAAGCCTGCGGGACTT
* *
70384706 TAGCTCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAA
65 TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
* * *
70384759 TACCAGCACAAATTCCTTCGGGACTTAACCCGGATATAAT
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
70384799 TCTTCATTAT
Statistics
Matches: 137, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
117 106 0.77
118 22 0.16
119 9 0.07
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (117 bp):
CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACTTT
AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
Found at i:70386999 original size:48 final size:48
Alignment explanation
Indices: 70386947--70387045 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 48
70386937 AAGTTTGAGT
*
70386947 TTAGGAACCTTTAACCTTAAGTATATAGTCAAGGTTCATTTGAATTTC
1 TTAGGAACCCTTAACCTTAAGTATATAGTCAAGGTTCATTTGAATTTC
70386995 TTAGGAACCCTTAACCTTAAGTATATAGTCAAGGTTCATTTGAATTTC
1 TTAGGAACCCTTAACCTTAAGTATATAGTCAAGGTTCATTTGAATTTC
70387043 TTA
1 TTA
70387046 CTTGCCCACG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (48 bp):
TTAGGAACCCTTAACCTTAAGTATATAGTCAAGGTTCATTTGAATTTC
Found at i:70393642 original size:19 final size:19
Alignment explanation
Indices: 70393618--70393655 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
70393608 GTTCAGTGAT
70393618 GGAAGAGGTAAAAACTTTA
1 GGAAGAGGTAAAAACTTTA
* *
70393637 GGAAGAGTTAGAAACTTTA
1 GGAAGAGGTAAAAACTTTA
70393656 ATTTTTATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.26, T:0.24
Consensus pattern (19 bp):
GGAAGAGGTAAAAACTTTA
Found at i:70397070 original size:79 final size:79
Alignment explanation
Indices: 70396939--70397116 Score: 297
Period size: 79 Copynumber: 2.3 Consensus size: 79
70396929 AACCCAAGTA
*
70396939 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATA
1 CCTTC-GGATCTTAGTCCGG-TATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATA
70397002 GTAACTAGCACAAATG
64 GTAACTAGCACAAATG
* *
70397018 CCTTCGGATCTTAGTCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGATCTTAGTCCGGTATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
70397083 AACTAGCACAAATG
66 AACTAGCACAAATG
70397097 CCTTCGGATCTTAGTCCGGT
1 CCTTCGGATCTTAGTCCGGT
70397117 TATCATCCGA
Statistics
Matches: 94, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
78 4 0.04
79 86 0.91
80 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGATCTTAGTCCGGTATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
AACTAGCACAAATG
Found at i:70397110 original size:40 final size:41
Alignment explanation
Indices: 70396939--70397115 Score: 260
Period size: 40 Copynumber: 4.5 Consensus size: 41
70396929 AACCCAAGTA
* *
70396939 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
70396978 CCTTCGGGA-CTTAGCCCAGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
70397018 CCTTC-GGATCTTAGTCCGG-TATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
70397057 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
70397097 CCTTC-GGATCTTAGTCCGG
1 CCTTCGGGATCTTAGCCCGG
70397116 TTATCATCCG
Statistics
Matches: 125, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
39 53 0.42
40 72 0.58
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (41 bp):
CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:70405152 original size:38 final size:39
Alignment explanation
Indices: 70405055--70405228 Score: 262
Period size: 40 Copynumber: 4.4 Consensus size: 39
70405045 CAAACCAGTA
* * *
70405055 CTTCGGATTTAG-CCGGATATAGCAACTTGCACAAATGC
1 CTTCGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
*
70405093 CTTCGAGACTTAGCCCAGATATAGTAACTAGCACAAATGC
1 CTTCG-GACTTAGCCCGGATATAGTAACTAGCACAAATGC
70405133 CTTCGG-CTTAGCCCGGATATAGTAACTAGCACAAATGC
1 CTTCGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
70405171 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
1 CTTC-GGACTTAGCCCGGATATAGTAACTAGCACAAATGC
*
70405211 CTTCGGATCTTAGTCCGG
1 CTTCGGA-CTTAGCCCGG
70405229 TTATCATCCG
Statistics
Matches: 125, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
38 40 0.32
39 12 0.10
40 73 0.58
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (39 bp):
CTTCGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
Found at i:70405184 original size:78 final size:77
Alignment explanation
Indices: 70405063--70405216 Score: 263
Period size: 78 Copynumber: 2.0 Consensus size: 77
70405053 TACTTCGGAT
*
70405063 TTAGCCGGATATAGCAACTTGCACAAATGCCTTCGAGACTTAGCCCAGATATAGTAACTAGCACA
1 TTAGCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCAGATATAGTAACTAGCACA
70405128 AATGCCTTCGGC
66 AATGCCTTCGGC
* * *
70405140 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC
1 TTAG-CCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCAGATATAGTAACTAGCAC
70405205 AAATGCCTTCGG
65 AAATGCCTTCGG
70405217 ATCTTAGTCC
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
77 4 0.06
78 68 0.94
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (77 bp):
TTAGCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCAGATATAGTAACTAGCACA
AATGCCTTCGGC
Found at i:70433531 original size:27 final size:27
Alignment explanation
Indices: 70433466--70433562 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
70433456 CCAAAAAAAC
** *
70433466 TCGCACACTTAGTGCCGGCATGGTCAAT
1 TCGCACACTTAGTG-CAACATAGTCAAT
* * *
70433494 TCGCACACTTAGTGCATCATATTCATT
1 TCGCACACTTAGTGCAACATAGTCAAT
70433521 TCGCACACTTAGTGCAACATAGTCAAAT
1 TCGCACACTTAGTGCAACATAGTC-AAT
70433549 T-GCACACTTAGTGC
1 TCGCACACTTAGTGC
70433563 TGTACAATTC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 43 0.72
28 17 0.28
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (27 bp):
TCGCACACTTAGTGCAACATAGTCAAT
Found at i:70437838 original size:44 final size:44
Alignment explanation
Indices: 70437687--70437889 Score: 222
Period size: 44 Copynumber: 4.7 Consensus size: 44
70437677 AGCTCGTTCA
* *
70437687 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AAT-CAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATACCAA-ATCG
**
70437730 ATGCC-ACTGTCCCAGACAG-GGTCTTACAC--AAA-ATTAAATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAATACCAAAT-CG
* * *
70437772 ATGTCAACGTCCTAGACATGGTCTTACACGTAAATACCAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATACCAAATCG
*
70437816 ATGCCAACGTCCCAGACGTGGTCTTACACATAAATACCAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATACCAAATCG
* * *
70437860 ATGCCAACGTCCTAGACATAGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
70437890 ATTTCACATA
Statistics
Matches: 134, Mismatches: 16, Indels: 19
0.79 0.09 0.11
Matches are distributed among these distances:
41 2 0.01
42 30 0.22
43 25 0.19
44 72 0.54
45 5 0.04
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATACCAAATCG
Found at i:70437839 original size:86 final size:86
Alignment explanation
Indices: 70437687--70437889 Score: 254
Period size: 86 Copynumber: 2.3 Consensus size: 86
70437677 AGCTCGTTCA
* * *
70437687 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCTAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
*
70437752 CTTACACA-AAAT-TAAATACG
66 CTTACACATAAATACAAAT-CG
* *
70437772 ATGTCAACGTCCTAGACATGGTCTTACACGTAAATACCAA-ATCGATGCCAAC-GTCCCAGAC-G
1 ATGCCAACGTCCTAGACATGGTCTTACACGT-AAT-CAAATATCGATGCC-ACTGTCCCAGACAG
70437834 TGGTCTTACACATAAATACCAAATCG
63 -GGTCTTACACATAAATA-CAAATCG
*
70437860 ATGCCAACGTCCTAGACATAGTCTTACACG
1 ATGCCAACGTCCTAGACATGGTCTTACACG
70437890 ATTTCACATA
Statistics
Matches: 103, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
85 28 0.27
86 32 0.31
87 9 0.09
88 30 0.29
89 4 0.04
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (86 bp):
ATGCCAACGTCCTAGACATGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
CTTACACATAAATACAAATCG
Found at i:70441065 original size:40 final size:39
Alignment explanation
Indices: 70440981--70441165 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
70440971 TTGAATGATG
* * * * *
70440981 TCCGGGCTAATTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-GAGTTACTAAA
* * *
70441021 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
70441061 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70441100 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
70441141 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
70441166 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 35 0.28
40 76 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70441187 original size:79 final size:79
Alignment explanation
Indices: 70441034--70441198 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
70441024 GGACTAAGAT
* * **
70441034 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
70441099 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
70441113 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
70441176 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70441192 CCGAAGG
1 CCGAAGG
70441199 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70443142 original size:23 final size:23
Alignment explanation
Indices: 70443108--70443181 Score: 89
Period size: 23 Copynumber: 3.2 Consensus size: 23
70443098 CTCCTGAGCT
70443108 GCTG-AACAGTAAGCTCTATTGA
1 GCTGAAACAGTAAGCTCTATTGA
**
70443130 GCTGAAACAGTAAGCTCTATCAA
1 GCTGAAACAGTAAGCTCTATTGA
*
70443153 GCTGAAAATAGTAAGCTCT-TTCGA
1 GCTG-AAACAGTAAGCTCTATT-GA
70443177 GCTGA
1 GCTGA
70443182 TATATTGGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
22 4 0.09
23 22 0.50
24 18 0.41
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (23 bp):
GCTGAAACAGTAAGCTCTATTGA
Found at i:70443170 original size:24 final size:24
Alignment explanation
Indices: 70443112--70443181 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
70443102 TGAGCTGCTG
*
70443112 AACAGTAAGCTCTATTGAGCTG-A
1 AACAGTAAGCTCTATCGAGCTGAA
*
70443135 AACAGTAAGCTCTATCAAGCTGAA
1 AACAGTAAGCTCTATCGAGCTGAA
* *
70443159 AATAGTAAGCTCTTTCGAGCTGA
1 AACAGTAAGCTCTATCGAGCTGA
70443182 TATATTGGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 20 0.49
24 21 0.51
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (24 bp):
AACAGTAAGCTCTATCGAGCTGAA
Found at i:70445429 original size:21 final size:21
Alignment explanation
Indices: 70445405--70445446 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
70445395 TATATGCTTA
70445405 GTAAGTTCGTATAACAGGAAT
1 GTAAGTTCGTATAACAGGAAT
*
70445426 GTAAGTTCGTATAATAGGAAT
1 GTAAGTTCGTATAACAGGAAT
70445447 TAAAACTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (21 bp):
GTAAGTTCGTATAACAGGAAT
Found at i:70448771 original size:37 final size:35
Alignment explanation
Indices: 70448720--70448790 Score: 90
Period size: 37 Copynumber: 2.0 Consensus size: 35
70448710 TCAGATTAAA
*
70448720 TAATATTATTTTAATAGT-TTAATATTAAATTTAATT
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATT
*
70448756 TAATACTTATCTTAATAGTATTTTATTAATTTAAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAAT
70448791 GCTAAAGTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.42
37 16 0.52
38 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (35 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATT
Found at i:70457137 original size:49 final size:50
Alignment explanation
Indices: 70457071--70457200 Score: 158
Period size: 49 Copynumber: 2.6 Consensus size: 50
70457061 ATTGAAGTTT
*
70457071 ATGACGTGTCCCAGACAGGTCTTACACTGACAT-TCATATATCGAG-GCCA
1 ATGACATGTCCCAGACAGGTCTTACACTGACATCTCATATATCG-GTGCCA
* * * * * *
70457120 ATGCCATGTCCCAGACAGGTCTTAGACTGGC-TCTCATCTATTGGTGTCA
1 ATGACATGTCCCAGACAGGTCTTACACTGACATCTCATATATCGGTGCCA
*
70457169 ATGACATGTCCCAGACAGGACTTACACTGACA
1 ATGACATGTCCCAGACAGGTCTTACACTGACA
70457201 CACAACAAGC
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
48 2 0.03
49 65 0.97
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (50 bp):
ATGACATGTCCCAGACAGGTCTTACACTGACATCTCATATATCGGTGCCA
Found at i:70458930 original size:48 final size:47
Alignment explanation
Indices: 70458871--70459140 Score: 270
Period size: 48 Copynumber: 5.6 Consensus size: 47
70458861 TATGTGTGCT
* *
70458871 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CACGATATGAGAGCC
* ***
70458919 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATTTAATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGAT-ATGAGAGCC
* * * * * * *
70458967 AGAGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CGATATGAGAGCC
* * * * * *
70459015 AGTGTAAGACCATGTTTGGGACATGACATCAGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CGATATGAGAGCC
* * * *
70459063 AGTGTAAGACTATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CACGATATGAGAGCC
* *
70459111 AGTGTAAGACCATATTTGGAACATGGCATC
1 AGTGTAAGACCATGTTTGGGACATGGCATC
70459141 AACAATTCAC
Statistics
Matches: 182, Mismatches: 37, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
47 3 0.02
48 177 0.97
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGATATGAGAGCC
Found at i:70459039 original size:96 final size:96
Alignment explanation
Indices: 70458874--70459141 Score: 333
Period size: 96 Copynumber: 2.8 Consensus size: 96
70458864 GTGTGCTAGT
* * *
70458874 GTAAGACCATGTCTGGGACATAGCATCGGCCA-CGATATGAGAGCCAGTGTAAGACCATGTTTGG
1 GTAAGACCATGTCTGGGACATGGCATC-GACATCGATATGTGAGCCAGTGTAAGACCATGTTTGG
* * *
70458938 AACATGGCATCGGCAATTTA-ATGAGAGCCAGA
65 AACATGGCATCAGC-ATTGAGACGAGAGCCAGA
* * * *
70458970 GTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCTAGTGTAAGACCATGTTTGGG
1 GTAAGACCATGTCTGGGACATGGCATCGACATCGATATGTGAGCCAGTGTAAGACCATGTTTGGA
* * *
70459035 ACATGACATCAGCATTGAGACGAGAGCTAGT
66 ACATGGCATCAGCATTGAGACGAGAGCCAGA
* * * * * *
70459066 GTAAGACTATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATATTTGGA
1 GTAAGACCATGTCTGGGACATGGCATCGACATCGATATGTGAGCCAGTGTAAGACCATGTTTGGA
70459131 ACATGGCATCA
66 ACATGGCATCA
70459142 ACAATTCACC
Statistics
Matches: 146, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
95 7 0.05
96 139 0.95
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (96 bp):
GTAAGACCATGTCTGGGACATGGCATCGACATCGATATGTGAGCCAGTGTAAGACCATGTTTGGA
ACATGGCATCAGCATTGAGACGAGAGCCAGA
Found at i:70459071 original size:144 final size:144
Alignment explanation
Indices: 70458858--70459140 Score: 374
Period size: 144 Copynumber: 2.0 Consensus size: 144
70458848 TGACATTTAG
* * *
70458858 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATAGCATCAGCCACGAGACGAGAGCCAGTG
** * *
70458923 TAAGACCATGTTTGGAACATGGCATCGGCAATTTA-ATGAGAGCCAGAGTAAGACCATGTCTGGG
66 TAAGACCATGTTTGGAACATGGCATCGGC-ATCGACATGAGAGCCAGAGTAAGACCATATCTGGA
70458987 ACATGGCATCGACAT
130 ACATGGCATCGACAT
* * *
70459002 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACAT-GACATCAG-CATTGAGACGAGAGCTAG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATAG-CATCAGCCA-CGAGACGAGAGCCAG
* * * * * *
70459065 TGTAAGACTATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATATTTGG
64 TGTAAGACCATGTTTGGAACATGGCATCGGCATCGACATGAGAGCCAGAGTAAGACCATATCTGG
70459130 AACATGGCATC
129 AACATGGCATC
70459141 AACAATTCAC
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
143 5 0.04
144 115 0.96
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (144 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATAGCATCAGCCACGAGACGAGAGCCAGTG
TAAGACCATGTTTGGAACATGGCATCGGCATCGACATGAGAGCCAGAGTAAGACCATATCTGGAA
CATGGCATCGACAT
Found at i:70464707 original size:40 final size:40
Alignment explanation
Indices: 70464654--70465009 Score: 541
Period size: 40 Copynumber: 8.9 Consensus size: 40
70464644 GAATACACAT
*
70464654 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
70464694 CACCAGTACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
70464734 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
70464774 CACCAACACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
70464814 CACCAGCATGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * **
70464854 CTCTAGCACGAATGCTCTTCGGGACTTAGCCCCAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
70464894 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* **
70464934 CTCTTGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
70464974 CACCAGCACGTATGCTCTTCGGGACTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
70465010 CATCGGCGAG
Statistics
Matches: 282, Mismatches: 34, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 282 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:70471832 original size:21 final size:21
Alignment explanation
Indices: 70471784--70471833 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
70471774 TTTTCACTCA
*
70471784 TTTTTCACCCAAATTGAGAGT
1 TTTTTCTCCCAAATTGAGAGT
*
70471805 TTTTTCTCCCGAATTGAGAGT
1 TTTTTCTCCCAAATTGAGAGT
70471826 TTTTTCTC
1 TTTTTCTC
70471834 TCTTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (21 bp):
TTTTTCTCCCAAATTGAGAGT
Found at i:70475765 original size:28 final size:28
Alignment explanation
Indices: 70475702--70475852 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
70475692 ATATTAAGTC
*
70475702 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
70475729 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
70475757 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70475785 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70475813 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
70475842 CGCACACTTAG
1 CGCACACTTAG
70475853 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 75 0.66
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70478155 original size:26 final size:26
Alignment explanation
Indices: 70478126--70478179 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
70478116 TAATAAATGA
70478126 TAGTTAATTAGTCATAAATGAGGTGT
1 TAGTTAATTAGTCATAAATGAGGTGT
70478152 TAGTTAATTAGTCATAAATGAGGTGT
1 TAGTTAATTAGTCATAAATGAGGTGT
70478178 TA
1 TA
70478180 TAAGGTTGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (26 bp):
TAGTTAATTAGTCATAAATGAGGTGT
Found at i:70479950 original size:25 final size:25
Alignment explanation
Indices: 70479917--70479970 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 25
70479907 ATTAAACTAG
*
70479917 TTTTCTTT-ATTTTTTTAAATATTTA
1 TTTTATTTAATTTTTTTAAA-ATTTA
*
70479942 TTTTATTTACATTTTTTTATAATTTA
1 TTTTATTTA-ATTTTTTTAAAATTTA
70479968 TTT
1 TTT
70479971 GATCGAATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 7 0.28
26 8 0.32
27 10 0.40
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (25 bp):
TTTTATTTAATTTTTTTAAAATTTA
Found at i:70483904 original size:6 final size:6
Alignment explanation
Indices: 70483890--70483925 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
70483880 CCAAAATCTG
*
70483890 CTATTC CTATGC CTATGC CTATGC CTATGC CTATGC
1 CTATGC CTATGC CTATGC CTATGC CTATGC CTATGC
70483926 ATTTGACCGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.33, G:0.14, T:0.36
Consensus pattern (6 bp):
CTATGC
Found at i:70492667 original size:39 final size:39
Alignment explanation
Indices: 70492613--70492690 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
70492603 CATCTCCTTA
70492613 AGTATTTTAGACTTGAAAGGATGAAAAATCAACATCGAC
1 AGTATTTTAGACTTGAAAGGATGAAAAATCAACATCGAC
*
70492652 AGTATTTTAGACTTGAAAGGATGCAAAATCAACATCGAC
1 AGTATTTTAGACTTGAAAGGATGAAAAATCAACATCGAC
70492691 TCGAGCGGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (39 bp):
AGTATTTTAGACTTGAAAGGATGAAAAATCAACATCGAC
Found at i:70493808 original size:21 final size:21
Alignment explanation
Indices: 70493766--70493808 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
70493756 TTTGCTATTT
* *
70493766 TCATTTTTGTTAGTTTCGGAG
1 TCATTTTTGTTAGTGTCAGAG
*
70493787 TCATTTTTGTTCGTGTCAGAG
1 TCATTTTTGTTAGTGTCAGAG
70493808 T
1 T
70493809 TGAAAGAGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.12, G:0.23, T:0.51
Consensus pattern (21 bp):
TCATTTTTGTTAGTGTCAGAG
Found at i:70494182 original size:3 final size:3
Alignment explanation
Indices: 70494176--70494209 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
70494166 CAGCAACAGC
*
70494176 AGA AGA AGA AGA AAA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
70494210 TTCAACCAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:70515531 original size:40 final size:40
Alignment explanation
Indices: 70515487--70515624 Score: 145
Period size: 40 Copynumber: 3.5 Consensus size: 40
70515477 GATATAGCTC
* *
70515487 CTCGTTCAAATGCCTTCGGGACATAGCCCAG-TTATAGTAA
1 CTCGTACAAATGCCTTCGGGACATAACCCAGATT-TAGTAA
* *
70515527 CTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTAA
1 CTCGTACAAATGCCTTCGGGACATAACCCAGATTTAGTAA
* * * * * * *
70515567 CTCGCACAAATGCCTTCGAG-CTTAGCCCGGAATTAGTAT
1 CTCGTACAAATGCCTTCGGGACATAACCCAGATTTAGTAA
*
70515606 CTCGCACAAATGCCTTCGG
1 CTCGTACAAATGCCTTCGG
70515625 ATCTTAGTCC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.39
40 51 0.59
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CTCGTACAAATGCCTTCGGGACATAACCCAGATTTAGTAA
Found at i:70515610 original size:39 final size:39
Alignment explanation
Indices: 70515521--70515677 Score: 156
Period size: 40 Copynumber: 3.9 Consensus size: 39
70515511 AGCCCAGTTA
* * * *
70515521 TAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGAG-CTTAGCCCGGAAT
70515561 TAGTAACTCGCACAAATGCCTTCGAGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGAGCTTAGCCCGGAAT
* * *
70515600 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG-AT
1 TAGTAACTCGCACAAATGCCTTC-GAGCTTAGCCCGGAAT
* * * *
70515639 ATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -TAGTAAC-TCGCACAAATGCCTTCGAG-CTTAGCCCGGA
70515678 CATCATTCAA
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
39 36 0.37
40 54 0.55
41 8 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGAGCTTAGCCCGGAAT
Found at i:70515637 original size:79 final size:80
Alignment explanation
Indices: 70515521--70515677 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 80
70515511 AGCCCAGTTA
* * *
70515521 TAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCG
70515585 AG-CTTAGCCCGGAAT
65 AGACTTAGCCCGGAAT
* ** * *
70515600 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCG
*
70515664 GGACTTAGCCCGGA
65 AGACTTAGCCCGGA
70515678 CATCATTCAA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 44 0.67
80 19 0.29
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGA
GACTTAGCCCGGAAT
Found at i:70523590 original size:79 final size:80
Alignment explanation
Indices: 70523488--70523672 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 80
70523478 GCTCTTCGTT
* *
70523488 CAAATGCCTTCGGGACATAGCCCGGTTAA-AGTAACTCGCACAAATGCCTTCGGCA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGG--AATAGTAACTCGCACAAAAGCCTTCGG-ATCTTAACCC
* *
70523551 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
70523568 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAAAGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAAAGCCTTCGGATCTTAACCCGG
* *
70523632 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
70523648 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70523673 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
77 2 0.02
78 1 0.01
79 55 0.60
80 33 0.36
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAAAGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:70523672 original size:40 final size:40
Alignment explanation
Indices: 70523488--70523672 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
70523478 GCTCTTCGTT
* * *
70523488 CAAATGCCTTCGGGACATAGCCCGGTTAAAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
70523528 CAAATGCCTTCGGCACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
70523568 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
70523607 CAAAAGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
70523648 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70523673 CATCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:70527976 original size:39 final size:39
Alignment explanation
Indices: 70527855--70528156 Score: 355
Period size: 39 Copynumber: 7.6 Consensus size: 39
70527845 GCTCCTCGTT
* *
70527855 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
70527895 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
70527935 CAAATGCCTTCGGGCTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
70527974 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
70528013 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
70528052 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAATTAGTATCTCGCA
* * *
70528092 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
70528133 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
70528157 CATCATTCAA
Statistics
Matches: 238, Mismatches: 17, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
39 129 0.54
40 99 0.42
41 10 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:70535343 original size:44 final size:44
Alignment explanation
Indices: 70535268--70535467 Score: 278
Period size: 44 Copynumber: 4.5 Consensus size: 44
70535258 TTGGCATTTC
* ** *
70535268 GCCTGCTAGGCTCGAA-GCTCGATATCATTTCACTGGTATTATA
1 GCCTGCTAGGCTCGAAGGCCCGATATCATTTCACCAGCATTATA
* *
70535311 GCCTGCTAGGCTCAAAGGCACGATATCATTTCACCAGCATTATA
1 GCCTGCTAGGCTCGAAGGCCCGATATCATTTCACCAGCATTATA
* *
70535355 GCCTACTAGGCTCGAAGGCCCGAATAGT-ATCTCACCAGCATTATA
1 GCCTGCTAGGCTCGAAGGCCCG-ATA-TCATTTCACCAGCATTATA
* *
70535400 GCCTGCTAGGCTCAAAGGCCCGATATCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGGCCCGATATCATTTCACCAGCATTATA
70535444 GCCTGCTAGGCTCGAAGGCCCGAT
1 GCCTGCTAGGCTCGAAGGCCCGAT
70535468 TAGTACCGTA
Statistics
Matches: 139, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
43 16 0.12
44 83 0.60
45 39 0.28
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (44 bp):
GCCTGCTAGGCTCGAAGGCCCGATATCATTTCACCAGCATTATA
Found at i:70535409 original size:89 final size:89
Alignment explanation
Indices: 70535305--70535472 Score: 300
Period size: 89 Copynumber: 1.9 Consensus size: 89
70535295 TTTCACTGGT
70535305 ATTATAGCCTGCTAGGCTCAAAGGCACGATATCATTTCACCAGCATTATAGCCTACTAGGCTCGA
1 ATTATAGCCTGCTAGGCTCAAAGGCACGATATCATTTCACCAGCATTATAGCCTACTAGGCTCGA
70535370 AGGCCCGAATAGTATCTCACCAGC
66 AGGCCCGAATAGTATCTCACCAGC
* * *
70535394 ATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCTCGA
1 ATTATAGCCTGCTAGGCTCAAAGGCACGATATCATTTCACCAGCATTATAGCCTACTAGGCTCGA
*
70535459 AGGCCCGATTAGTA
66 AGGCCCGAATAGTA
70535473 CCGTACGATA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 75 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (89 bp):
ATTATAGCCTGCTAGGCTCAAAGGCACGATATCATTTCACCAGCATTATAGCCTACTAGGCTCGA
AGGCCCGAATAGTATCTCACCAGC
Found at i:70543869 original size:48 final size:48
Alignment explanation
Indices: 70543802--70544242 Score: 684
Period size: 48 Copynumber: 9.1 Consensus size: 48
70543792 ACACATCTCC
70543802 TACATATTGCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
1 TACATA-T-CTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
* *
70543852 TACATATCTCATACATATTTCACATTAGCCATTCGGCATTACCACATA
1 TACATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
* * **
70543900 TACATATCTCATACACATTTCACATTAGCCATTCGGCTTTACTGCATA
1 TACATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
* *
70543948 TATATATCTCATACCTATTTCATATTAGCCATTCGGCTTTACCACATA
1 TACATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
* **
70543996 TACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACTGCATA
1 TACATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
* *
70544044 TATATATCTCATACATATTTCATATTAGCCATTTGGCTTTACCACATA
1 TACATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
* *
70544092 TATATATCTCATACATATTTCATATTAGCCATTTGGCTTTACCACATA
1 TACATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
* *
70544140 TATATACCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
1 TACATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
* *
70544188 TACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACA
1 TACATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
*
70544236 TATATAT
1 TACATAT
70544243 ATTTATCTTG
Statistics
Matches: 362, Mismatches: 29, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 355 0.98
49 1 0.00
50 6 0.02
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (48 bp):
TACATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATA
Found at i:70547225 original size:45 final size:44
Alignment explanation
Indices: 70547162--70547277 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 44
70547152 AAACTCGAAT
* * *
70547162 TCATC-CATCGGCATTATAGCCTACTAGGCTCGAAGGCCCGAATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCG-ATA
70547206 GT-ATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATA
1 -TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATA
* *
70547250 TCATTTCACCAGCATTATAGCCTGCTAG
1 TCATCTCACCGGCATTATAGCCTGCTAG
70547278 TGTAACGCCC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
43 1 0.02
44 30 0.47
45 33 0.52
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (44 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATA
Found at i:70551116 original size:29 final size:29
Alignment explanation
Indices: 70551074--70551147 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
70551064 GTTGTGAGAT
* * *
70551074 TGGCACTAAATGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
70551103 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
70551132 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70551148 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:70554383 original size:20 final size:20
Alignment explanation
Indices: 70554360--70554406 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
70554350 GGGTTAAGAT
*
70554360 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
70554380 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
70554400 TGAGCTG
1 TGAGCTG
70554407 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:70556131 original size:48 final size:48
Alignment explanation
Indices: 70556076--70556181 Score: 130
Period size: 48 Copynumber: 2.2 Consensus size: 48
70556066 TTGTCTTTTC
*
70556076 TTTCTTTTTC-A-AT-TTTCTCTTTTTCCTTACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCGATATCTTTCTCTTTTT-C--ACATCCTTT-TTCAATCTCAA
*
70556124 TTTCTTTTTCGATCTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCGATATCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
70556172 TTTCTTTTTC
1 TTTCTTTTTC
70556182 CATGACACTC
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
48 34 0.65
49 5 0.10
50 2 0.04
51 11 0.21
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCGATATCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:70556178 original size:18 final size:18
Alignment explanation
Indices: 70556113--70556181 Score: 53
Period size: 18 Copynumber: 4.2 Consensus size: 18
70556103 TACACTTTTG
70556113 TTCAATCTCAATTTCTTT
1 TTCAATCTCAATTTCTTT
* *
70556131 TTCGATCTC--TTTCTCT
1 TTCAATCTCAATTTCTTT
*
70556147 TT---T-TCACA-TCCTTT
1 TTCAATCTCA-ATTTCTTT
70556161 TTCAATCTCAATTTCTTT
1 TTCAATCTCAATTTCTTT
70556179 TTC
1 TTC
70556182 CATGACACTC
Statistics
Matches: 38, Mismatches: 5, Indels: 16
0.64 0.08 0.27
Matches are distributed among these distances:
12 2 0.05
13 1 0.03
14 6 0.16
16 8 0.21
17 2 0.05
18 19 0.50
ACGTcount: A:0.16, C:0.26, G:0.01, T:0.57
Consensus pattern (18 bp):
TTCAATCTCAATTTCTTT
Found at i:70558770 original size:20 final size:20
Alignment explanation
Indices: 70558747--70558793 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
70558737 GGGTTAAGAT
*
70558747 TGAGCTGACTTGAGCTTGAG
1 TGAGCTGACTTGAGCTCGAG
*
70558767 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGACTTGAGCTCGAG
70558787 TGAGCTG
1 TGAGCTG
70558794 GAAACGAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.19, C:0.15, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGACTTGAGCTCGAG
Found at i:70572743 original size:23 final size:23
Alignment explanation
Indices: 70572713--70572761 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
70572703 AAAGATTGAA
70572713 GTATGTTTAACAACTTTTCCTAG
1 GTATGTTTAACAACTTTTCCTAG
70572736 GTATGTTTAACAACTTTTCCTAG
1 GTATGTTTAACAACTTTTCCTAG
70572759 GTA
1 GTA
70572762 ATTTTTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (23 bp):
GTATGTTTAACAACTTTTCCTAG
Found at i:70573514 original size:44 final size:43
Alignment explanation
Indices: 70573443--70573558 Score: 126
Period size: 44 Copynumber: 2.7 Consensus size: 43
70573433 ATTTTGAAAT
* * *
70573443 TCGACCTCATTGAGTTGGTCCGGGTTCATGATATGTATGAGGCA
1 TCGACCTCATTGAGTTGGTCCGAGTTCATGATAGGTACGA-GCA
* * *
70573487 TCGAGCTCATTGAGTTGGTCCGAGTTCATTATGGGTACGAGCA
1 TCGACCTCATTGAGTTGGTCCGAGTTCATGATAGGTACGAGCA
* * *
70573530 TCCGATCTCGTTGAGTT-GTCCAAGTTCAT
1 T-CGACCTCATTGAGTTGGTCCGAGTTCAT
70573559 TATGGATGTG
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
43 15 0.24
44 47 0.76
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (43 bp):
TCGACCTCATTGAGTTGGTCCGAGTTCATGATAGGTACGAGCA
Found at i:70574881 original size:46 final size:48
Alignment explanation
Indices: 70574750--70575160 Score: 231
Period size: 46 Copynumber: 8.7 Consensus size: 48
70574740 TTTGTGTGCT
* * * *
70574750 AGTGTAAGA-CATGTCTAGGACAT-GCATCAG-TATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-T-AGATGTAGAGCC
* *
70574796 AGTGTAAGA-CATGTCCGGGACAT-GCATGGGCCTCA-AGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CT-ATAGATGTAGAGCC
*
70574842 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGT---GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTAT-AGATGTAGAGCC
* * * **
70574886 AGTGTAAGACCATTTCTGGGACATGGCATCGG-TACGAATATGTGAGAGAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA--TAGATGT-AGAGCC
* * * * *
70574936 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCA-A-TTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CT-ATAGATGT-AGAGCC
* * **
70574985 AGTGTAAGATCATGTCTCGGACATGGCATCAACT-T-GATGGATA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATAGAT-G-TAGAGCC
* * * * *
70575032 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCT-CA-ATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTATAGATGT--AGAGCC
* * *
70575081 AGTGTAAGACCATGTCTCGGACAAGGCATCGACT-T-GATGGATA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATAGAT-G-TAGAGCC
70575128 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
70575161 ATTATACCCT
Statistics
Matches: 289, Mismatches: 47, Indels: 57
0.74 0.12 0.15
Matches are distributed among these distances:
44 12 0.04
45 17 0.06
46 80 0.28
47 65 0.22
48 14 0.05
49 66 0.23
50 33 0.11
52 1 0.00
53 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATAGATGTAGAGCC
Found at i:70574999 original size:49 final size:49
Alignment explanation
Indices: 70574796--70575160 Score: 282
Period size: 49 Copynumber: 7.7 Consensus size: 49
70574786 GACGAGAGCT
* * ** * *
70574796 AGTGTAAGA-CATGTCCGGGACAT-GCATGGGCCTCAAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATTTGGATAGTC
*
70574842 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CT--A--TGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATTTG-GAT-AGTC
* * *
70574886 AGTGTAAGACCATTTCTGGGACATGGCATCGG--TACGAATATGTGAGAGAT-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-C-AATTTG-GATAG-TC
* *
70574936 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATTTGGATAGTC
* * ** ** *
70574985 AGTGTAAGATCATGTCTCGGACATGGCATC-AACTTGA--TGGATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATTTGGAT-AGTC
* *
70575032 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATTTGGATAGTC
* * * ** *
70575081 AGTGTAAGACCATGTCTCGGACAAGGCATC-GACTTGA--TGGATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATTTGGAT-AGTC
70575128 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
70575161 ATTATACCCT
Statistics
Matches: 255, Mismatches: 43, Indels: 40
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.01
42 1 0.00
43 1 0.00
44 11 0.04
45 16 0.06
46 43 0.17
47 61 0.24
48 12 0.05
49 62 0.24
50 39 0.15
51 6 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATTTGGATAGTC
Found at i:70575047 original size:47 final size:47
Alignment explanation
Indices: 70574836--70575158 Score: 221
Period size: 47 Copynumber: 6.8 Consensus size: 47
70574826 CCTCAAGATG
* *
70574836 TAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-T-ATGAGA
1 TAAGCCAGTGTAAGACCATGTCTCGGACATGGCATCGACTTGATG-GA
** * * * *
70574880 TGTGTCAGTGTAAGACCATTTCTGGGACATGGCATCGGTACGAAT-ATGTGA
1 TAAGCCAGTGTAAGACCATGTCTCGGACATGGCATC-G-AC--TTGATG-GA
* ** * * * ** *
70574931 -GAGATAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTTGA
1 TAAGCCAGTGTAAGACCATGTCTCGGACATGGCATC-GACTTGA--TGGA
* * *
70574980 T-AGTCAGTGTAAGATCATGTCTCGGACATGGCATCAACTTGATGGA
1 TAAGCCAGTGTAAGACCATGTCTCGGACATGGCATCGACTTGATGGA
* * * ** *
70575026 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTCGA
1 TAAGCCAGTGTAAGACCATGTCTCGGACATGGCATC-GACTTGA--TGGA
* *
70575076 T-AGTCAGTGTAAGACCATGTCTCGGACAAGGCATCGACTTGATGGA
1 TAAGCCAGTGTAAGACCATGTCTCGGACATGGCATCGACTTGATGGA
*
70575122 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TAAGCCAGTGTAAGACCATGTCTCGGACATGGCATCG
70575159 GCATTATACC
Statistics
Matches: 218, Mismatches: 45, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
44 12 0.06
45 13 0.06
46 13 0.06
47 63 0.29
48 12 0.06
49 62 0.28
50 37 0.17
51 6 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
TAAGCCAGTGTAAGACCATGTCTCGGACATGGCATCGACTTGATGGA
Found at i:70575050 original size:96 final size:96
Alignment explanation
Indices: 70574936--70575160 Score: 405
Period size: 96 Copynumber: 2.3 Consensus size: 96
70574926 TGTGAGAGAT
* *
70574936 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTTGATAGTCAGTGTAAGATCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTCGATAGTCAGTGTAAGACCATGTC
*
70575001 TCGGACATGGCATCAACTTGATGGATAAGCC
66 TCGGACAAGGCATCAACTTGATGGATAAGCC
70575032 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTCGATAGTCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTCGATAGTCAGTGTAAGACCATGTC
*
70575097 TCGGACAAGGCATCGACTTGATGGATAAGCC
66 TCGGACAAGGCATCAACTTGATGGATAAGCC
*
70575128 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCGTCGGC
70575161 ATTATACCCT
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 124 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTCGATAGTCAGTGTAAGACCATGTC
TCGGACAAGGCATCAACTTGATGGATAAGCC
Found at i:70575050 original size:146 final size:140
Alignment explanation
Indices: 70574789--70575063 Score: 329
Period size: 146 Copynumber: 1.9 Consensus size: 140
70574779 GTATTGAGAC
* *
70574789 GAGAGCTAGTGTAAGACATGTCCGGGACATGCATGGGCCTCAAGATGTAAGCCAGTGTAAGACAT
1 GAGAGATAGTGTAAGACATGTCCGGGACATGCATCGGCCTCAAGATGTAAGCCAGTGTAAGACAT
* ** ** * *
70574854 GTCTGGGACATGCATCGGCTATGAGATGTGTCAGTGTAAGACCATTTCTGGGACATGGCATCGGT
66 GTCTCGGACATGCATCAACTATGAGATAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGT
70574919 ACGAATATGT
131 ACGAATATGT
* * * * *
70574929 GAGAGATAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAA-TTTTGATAGTCAGTGTAAG
1 GAGAGATAGTGTAAGA-CATGTCCGGGACAT-GCATCGGCCTCAAGATGT-A-AGCCAGTGTAAG
70574993 ATCATGTCTCGGACATGGCATCAACT-TGATGGATAAGCCAGTGTAAGACCATGTCTGGGACATG
62 A-CATGTCTCGGACAT-GCATCAACTATGA--GATAAGCCAGTGTAAGACCATGTCTGGGACATG
*
70575057 GCGTCGG
123 GCATCGG
70575064 CCTCAATTTC
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
140 15 0.13
141 15 0.13
142 12 0.11
143 12 0.11
144 16 0.14
145 7 0.06
146 35 0.31
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (140 bp):
GAGAGATAGTGTAAGACATGTCCGGGACATGCATCGGCCTCAAGATGTAAGCCAGTGTAAGACAT
GTCTCGGACATGCATCAACTATGAGATAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGT
ACGAATATGT
Found at i:70583189 original size:55 final size:55
Alignment explanation
Indices: 70583092--70583202 Score: 132
Period size: 55 Copynumber: 2.0 Consensus size: 55
70583082 CAAGCCTGCC
* **
70583092 AAAACAACACGGGCGTACCACACGCCCGTGTGGAAAAACCATGGGTGAACCTGTT
1 AAAACAACACGGGCGTACCACACGCCCGTGTCGAAAAACCATGGCCGAACCTGTT
* * * * ** *
70583147 AAAACAACACGGGTGTGCGACACGCCCGTGTCTAGCACCCATGGCCGAACCTGTT
1 AAAACAACACGGGCGTACCACACGCCCGTGTCGAAAAACCATGGCCGAACCTGTT
70583202 A
1 A
70583203 GATTGACACA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.15
Consensus pattern (55 bp):
AAAACAACACGGGCGTACCACACGCCCGTGTCGAAAAACCATGGCCGAACCTGTT
Found at i:70584954 original size:119 final size:120
Alignment explanation
Indices: 70584772--70584994 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
70584762 TCCTCGTTCA
* *
70584772 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
70584837 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
70584892 AATGCCTTCAGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCAGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
70584954 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
70584995 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.74
120 19 0.21
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:70584994 original size:40 final size:40
Alignment explanation
Indices: 70584770--70584994 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
70584760 GCTCCTCGTT
* *
70584770 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
70584810 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
70584850 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
70584890 CCAATGCCTTCAGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
70584929 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
70584970 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70584995 CATCATTCAA
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 118 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:70591873 original size:40 final size:40
Alignment explanation
Indices: 70591773--70591944 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
70591763 GCTCCTCGTT
* * *
70591773 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
70591813 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
70591852 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
70591892 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
70591932 CAAATGCCTTCGG
1 CAAATGCCTTCGG
70591945 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:70593579 original size:40 final size:40
Alignment explanation
Indices: 70593530--70593789 Score: 421
Period size: 40 Copynumber: 6.5 Consensus size: 40
70593520 GGGCTGTCAC
*
70593530 AGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTA
1 AGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTA
70593570 AGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTA
1 AGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTA
70593610 AGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTA
1 AGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTA
* *
70593650 AAACCCGAAGGCATTTGTGCGAGTTGATAAATCCGGGCTA
1 AGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTA
* * *
70593690 AGACCCGAAGGCAATTATGCAAGTTGATATATCCGGGCTA
1 AGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTA
* * * *
70593730 AGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTA
1 AGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTA
*
70593770 AGACCCGAAGGCAATTGTGC
1 AGACCCGAAGGCATTTGTGC
70593790 TTGCGGTTAT
Statistics
Matches: 203, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 203 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (40 bp):
AGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTA
Found at i:70610432 original size:20 final size:19
Alignment explanation
Indices: 70610387--70610432 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
70610377 GGTTTGTTCA
*
70610387 CAATACTAACAGCTTGTTG
1 CAATACTAACAGCTTATTG
*
70610406 CAATACTAACAGTTTATCTG
1 CAATACTAACAGCTTAT-TG
*
70610426 CATTACT
1 CAATACT
70610433 GGTGGCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (19 bp):
CAATACTAACAGCTTATTG
Found at i:70610502 original size:40 final size:40
Alignment explanation
Indices: 70610442--70610536 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
70610432 TGGTGGCTTT
* * ** * *
70610442 TCCACATTATTGGCAGCTTGTCTGTAACACTAGTGACTTG
1 TCCACATTACTGGCAACTTGTCTACAACACTAGTGACCTA
* * *
70610482 TCCACATTACTGGTAACTTGTCTACAACACTGGTGGCCTA
1 TCCACATTACTGGCAACTTGTCTACAACACTAGTGACCTA
70610522 TCCACATTACTGGCA
1 TCCACATTACTGGCA
70610537 GTTTCTCTGC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (40 bp):
TCCACATTACTGGCAACTTGTCTACAACACTAGTGACCTA
Found at i:70610513 original size:20 final size:20
Alignment explanation
Indices: 70610467--70610515 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
70610457 GCTTGTCTGT
* *
70610467 AACACTAGTGACTTGTCCAC
1 AACACTGGTAACTTGTCCAC
** *
70610487 ATTACTGGTAACTTGTCTAC
1 AACACTGGTAACTTGTCCAC
70610507 AACACTGGT
1 AACACTGGT
70610516 GGCCTATCCA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (20 bp):
AACACTGGTAACTTGTCCAC
Found at i:70615586 original size:31 final size:31
Alignment explanation
Indices: 70615549--70615608 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
70615539 TTCGTGTGAG
70615549 GGGGCTAGAGTGGTCCAAGATATCATTCAAA
1 GGGGCTAGAGTGGTCCAAGATATCATTCAAA
70615580 GGGGCTAGAGTGGTCCAAGATATCATTCA
1 GGGGCTAGAGTGGTCCAAGATATCATTCA
70615609 GGAATATGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (31 bp):
GGGGCTAGAGTGGTCCAAGATATCATTCAAA
Found at i:70616197 original size:330 final size:332
Alignment explanation
Indices: 70615578--70616271 Score: 1182
Period size: 330 Copynumber: 2.1 Consensus size: 332
70615568 ATATCATTCA
70615578 AAGGGGCTAGAGTGGTCCAAGATATCATTCAGGAATATGAGATGGTCTCAAGACAGCGAGTGAAT
1 AAGGGGCTAGAGTGGTCCAAGATATCATTCAGGAATATGAGATGGTCTCAAGACAGCGAGTGAAT
* *
70615643 TTCAACAAGTCCCTTATCTATTTCGAGGTTAATGTAAATTCAAATGTGAAAGCAGAGATTATCAA
66 TTCAACAAGTCCCTTATCTATTTCAAGGCTAATGTAAATTCAAATGTGAAAGCAGAGATTATCAA
*
70615708 TTTGTTAAGAGTTCACGAAGGGCTACCAATCTTGAGAAGTACCTTGTACTGCCTAAGATGATGGG
131 TTTGTTAAGAGTTCACGAAGGGCTACCAATCTTGAGAAGTACCTTGGACTGCCTAAGATGATGGG
* *
70615773 TAGAAGGAAAACATGGGCTTTTGCCAATTTTGCTAATAGGTTCAAGATGATGGGCACAACTATTG
196 TAGAAAGAAAACATGGGCTTTTGCCAATTTTGCTAATAGATTCAAGATGATGGGCACAACTATTG
*
70615838 GTAGAGAGAGATTTGCTATTAATCATCTATTTTTTGCATATGATTGCATCCTTTAAGGCGATGCT
261 GTAGAGAGAGATTTGCTATTAATCATCTATTTTTTGCATATGATTGCATCCTTTAAGGCAATGCT
70615903 TCGTGTG
326 TCGTGTG
* * *
70615910 AGGGGGCTAGAGT-GTACAAGATATCATTC-GAGAATATGATATGGTCTCAAGACAGCGAGTGAA
1 AAGGGGCTAGAGTGGTCCAAGATATCATTCAG-GAATATGAGATGGTCTCAAGACAGCGAGTGAA
*
70615973 TTTCGACAAGTCCCTTATCTATTTCAAGGCTAATGT-AATTCAAATGTGAAAGCAGAGATTATCA
65 TTTCAACAAGTCCCTTATCTATTTCAAGGCTAATGTAAATTCAAATGTGAAAGCAGAGATTATCA
* *
70616037 ATTTGTTAAGAGTTCACG-AGTGGCTACCAATCTTGAGAAGTACCTTGGACTGCCTATGATGGTG
130 ATTTGTTAAGAGTTCACGAAG-GGCTACCAATCTTGAGAAGTACCTTGGACTGCCTAAGATGATG
* *
70616101 GGTAGAAAGAAAACATGGGCTTTTGCCAATTTTGCTGATAGATTCAAGATGATGGGCGCAACTAT
194 GGTAGAAAGAAAACATGGGCTTTTGCCAATTTTGCTAATAGATTCAAGATGATGGGCACAACTAT
*
70616166 TGGTA-AGGGGAGATTTGCTATTAATCATCTATTTTTTGCATATGATTGCATCCTTTAAGGCAAT
259 TGGTAGA-GAGAGATTTGCTATTAATCATCTATTTTTTGCATATGATTGCATCCTTTAAGGCAAT
70616230 GCTTCGTGTG
323 GCTTCGTGTG
*
70616240 AAGGGGCTAGAGTGGTCCAGGATATCATTCAG
1 AAGGGGCTAGAGTGGTCCAAGATATCATTCAG
70616272 AGGGGCTAGA
Statistics
Matches: 339, Mismatches: 18, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
329 3 0.01
330 230 0.68
331 93 0.27
332 13 0.04
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (332 bp):
AAGGGGCTAGAGTGGTCCAAGATATCATTCAGGAATATGAGATGGTCTCAAGACAGCGAGTGAAT
TTCAACAAGTCCCTTATCTATTTCAAGGCTAATGTAAATTCAAATGTGAAAGCAGAGATTATCAA
TTTGTTAAGAGTTCACGAAGGGCTACCAATCTTGAGAAGTACCTTGGACTGCCTAAGATGATGGG
TAGAAAGAAAACATGGGCTTTTGCCAATTTTGCTAATAGATTCAAGATGATGGGCACAACTATTG
GTAGAGAGAGATTTGCTATTAATCATCTATTTTTTGCATATGATTGCATCCTTTAAGGCAATGCT
TCGTGTG
Found at i:70616279 original size:31 final size:31
Alignment explanation
Indices: 70616241--70616300 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
70616231 CTTCGTGTGA
*
70616241 AGGGGCTAGAGTGGTCCAGGATATCATTCAG
1 AGGGGCTAGAGTGGTCCAAGATATCATTCAG
*
70616272 AGGGGCTAGAGTGGTTCAAGATATCATTC
1 AGGGGCTAGAGTGGTCCAAGATATCATTC
70616301 GAGAATATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (31 bp):
AGGGGCTAGAGTGGTCCAAGATATCATTCAG
Found at i:70620666 original size:30 final size:30
Alignment explanation
Indices: 70620606--70620666 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
70620596 GATGGAATGA
* * **
70620606 GAGTAAAAGTTTTGGGGGGAAAGTGGAAAG
1 GAGTAAAAGTTTTGAGGGAAAAGTAAAAAG
70620636 GAGTAAAAGTTTTGAGGGAAAAGTAAAAAG
1 GAGTAAAAGTTTTGAGGGAAAAGTAAAAAG
70620666 G
1 G
70620667 TTTGGGAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.43, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
GAGTAAAAGTTTTGAGGGAAAAGTAAAAAG
Found at i:70620722 original size:9 final size:9
Alignment explanation
Indices: 70620708--70620744 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
70620698 TATAGTTTGA
70620708 TATTCGAAT
1 TATTCGAAT
70620717 TATTCGAAT
1 TATTCGAAT
*
70620726 TATTCGAGT
1 TATTCGAAT
70620735 TATTCGAAT
1 TATTCGAAT
70620744 T
1 T
70620745 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:70622500 original size:22 final size:22
Alignment explanation
Indices: 70622472--70622516 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
70622462 ATCAAGACTG
70622472 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
70622494 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
70622516 T
1 T
70622517 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:70631572 original size:37 final size:37
Alignment explanation
Indices: 70631513--70631619 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
70631503 AGCTCAGATG
** *
70631513 AAATCTCCACACAAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
70631550 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
70631587 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
70631620 AAATATATTT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:70631822 original size:48 final size:48
Alignment explanation
Indices: 70631768--70632352 Score: 965
Period size: 48 Copynumber: 12.1 Consensus size: 48
70631758 ACACATCGCC
* *
70631768 TACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70631816 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
70631866 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTC--A
* * *
70631916 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70631964 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
70632012 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
70632060 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
70632108 TACATATTTCACATTAGCTATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
70632156 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTGA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
70632204 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
70632252 TACATATTTCATACTAGCCATTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
70632300 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
70632348 TACAT
1 TACAT
70632353 CAATTTCAGC
Statistics
Matches: 510, Mismatches: 23, Indels: 8
0.94 0.04 0.01
Matches are distributed among these distances:
48 420 0.82
49 1 0.00
50 88 0.17
51 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:70644936 original size:21 final size:22
Alignment explanation
Indices: 70644875--70644941 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 22
70644865 GGACCAGTAG
*
70644875 ATTTTTACTGTTTTTGGTTTGTT
1 ATTTTTA-TGCTTTTGGTTTGTT
*
70644898 ATTTTTATTCTTTT-GTTTGTT
1 ATTTTTATGCTTTTGGTTTGTT
* *
70644919 -TTATTT-TGGTTTTGGTTTTTT
1 ATT-TTTATGCTTTTGGTTTGTT
70644940 AT
1 AT
70644942 GGGCCCAGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
20 7 0.19
21 16 0.44
22 6 0.17
23 7 0.19
ACGTcount: A:0.09, C:0.03, G:0.15, T:0.73
Consensus pattern (22 bp):
ATTTTTATGCTTTTGGTTTGTT
Found at i:70645863 original size:11 final size:11
Alignment explanation
Indices: 70645849--70645913 Score: 60
Period size: 11 Copynumber: 5.8 Consensus size: 11
70645839 ATTACTAGTG
*
70645849 TATTTCTTTTA
1 TATTTATTTTA
*
70645860 TATTTATTTATC
1 TATTTATTT-TA
*
70645872 TATTCATTTTA
1 TATTTATTTTA
*
70645883 TGTTTATTTTA
1 TATTTATTTTA
70645894 T-TTTATTTTA
1 TATTTATTTTA
*
70645904 CCATTTATTT
1 -TATTTATTT
70645914 AACTATATCC
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
10 9 0.20
11 19 0.43
12 16 0.36
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.69
Consensus pattern (11 bp):
TATTTATTTTA
Found at i:70646088 original size:23 final size:23
Alignment explanation
Indices: 70646050--70646108 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
70646040 TCATTATTTT
* *
70646050 CTATTATTGTTATTATCAATACA
1 CTATTATTATTCTTATCAATACA
* **
70646073 CTATTATTATTCTTATTAATGTA
1 CTATTATTATTCTTATCAATACA
*
70646096 TTATTATTATTCT
1 CTATTATTATTCT
70646109 CTACATTATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.03, T:0.56
Consensus pattern (23 bp):
CTATTATTATTCTTATCAATACA
Found at i:70646156 original size:3 final size:3
Alignment explanation
Indices: 70645994--70646138 Score: 75
Period size: 3 Copynumber: 48.3 Consensus size: 3
70645984 ATTTTTATCG
* * * *
70645994 TAT TAT TAT TAT CAT TAT TCCT TAG T-T TAT TAT TAT TAT TAC T-T
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
70646038 TAT CAT TAT TTT CTAT TAT TGT TAT TAT CAA TA- CAC TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
70646083 TCT TAT TAAT GTAT TAT TAT TAT TCT CTA- CAT TAT TAT TAT TA- TAT
1 TAT TAT T-AT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
*
70646129 TAT TAC TAT T
1 TAT TAT TAT T
70646139 GCTATCATCA
Statistics
Matches: 104, Mismatches: 28, Indels: 20
0.68 0.18 0.13
Matches are distributed among these distances:
2 6 0.06
3 88 0.85
4 9 0.09
5 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:70646624 original size:15 final size:15
Alignment explanation
Indices: 70646601--70646630 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70646591 TATATATTAC
*
70646601 TTATTTTAAAATTTT
1 TTATCTTAAAATTTT
70646616 TTATCTTAAAATTTT
1 TTATCTTAAAATTTT
70646631 ACTTTGGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
TTATCTTAAAATTTT
Found at i:70646814 original size:27 final size:26
Alignment explanation
Indices: 70646772--70646842 Score: 65
Period size: 28 Copynumber: 2.6 Consensus size: 26
70646762 TACTTTGTGA
70646772 ATTATTTATCTT-AATTT-ATTTAACAT
1 ATTATTTAT-TTAAATTTGATTT-ACAT
* *
70646798 ATTATTTATTTGAAATTTGCTTTATAT
1 ATTATTTATTT-AAATTTGATTTACAT
70646825 ATTATTTTATTTCAAATT
1 ATTA-TTTATTT-AAATT
70646843 GTTTTATATG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
25 2 0.05
26 9 0.24
27 12 0.32
28 15 0.39
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (26 bp):
ATTATTTATTTAAATTTGATTTACAT
Found at i:70646848 original size:27 final size:28
Alignment explanation
Indices: 70646796--70646857 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
70646786 TTTATTTAAC
*
70646796 ATATTA-TTTATTTGAAATTTGCTTTAT
1 ATATTATTTTATTTCAAATTTGCTTTAT
*
70646823 ATATTATTTTATTTCAAA-TTGTTTTAT
1 ATATTATTTTATTTCAAATTTGCTTTAT
*
70646850 ATGTTATT
1 ATATTATT
70646858 CATGTTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 21 0.68
28 10 0.32
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.61
Consensus pattern (28 bp):
ATATTATTTTATTTCAAATTTGCTTTAT
Found at i:70647094 original size:18 final size:18
Alignment explanation
Indices: 70647071--70647131 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
70647061 ATTTATCTTC
70647071 ATATTGTGACATTCATTA
1 ATATTGTGACATTCATTA
* ** *
70647089 ATATTGTTATTTATC-TTC
1 ATATTGTGACAT-TCATTA
70647107 ATATTGTGACATTCATTA
1 ATATTGTGACATTCATTA
70647125 ATATTGT
1 ATATTGT
70647132 ATCTAATTCG
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
17 2 0.06
18 29 0.88
19 2 0.06
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.51
Consensus pattern (18 bp):
ATATTGTGACATTCATTA
Found at i:70647100 original size:36 final size:36
Alignment explanation
Indices: 70647059--70647131 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
70647049 GTACTAGAAA
70647059 TTATTTATCTTCATATTGTGACATTCATTAATATTG
1 TTATTTATCTTCATATTGTGACATTCATTAATATTG
70647095 TTATTTATCTTCATATTGTGACATTCATTAATATTG
1 TTATTTATCTTCATATTGTGACATTCATTAATATTG
70647131 T
1 T
70647132 ATCTAATTCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.53
Consensus pattern (36 bp):
TTATTTATCTTCATATTGTGACATTCATTAATATTG
Found at i:70648465 original size:27 final size:26
Alignment explanation
Indices: 70648414--70648466 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
70648404 CAAATAAAAC
* *
70648414 AAATTGAAACTAATGATATATATATG
1 AAATTGAAACTAATGATACAAATATG
70648440 AAATTGAAAACCTAAT-ATACAAATATG
1 AAATTG-AAA-CTAATGATACAAATATG
70648467 CTAATTTGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 6 0.26
27 12 0.52
28 5 0.22
ACGTcount: A:0.53, C:0.08, G:0.09, T:0.30
Consensus pattern (26 bp):
AAATTGAAACTAATGATACAAATATG
Found at i:70648797 original size:3 final size:3
Alignment explanation
Indices: 70648789--70648834 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
70648779 GAATTAAAAT
* *
70648789 TAA TAA TAA CAA -AA TAA TAA TAA TAA TAA TAGC T-A TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
70648833 TA
1 TA
70648835 GGAGGATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
2 3 0.08
3 33 0.89
4 1 0.03
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:70650307 original size:12 final size:12
Alignment explanation
Indices: 70650279--70650317 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
70650269 GCCTCTACAC
*
70650279 ATTGTTATCATT
1 ATTGTTATTATT
* *
70650291 GTTGTTCTTATT
1 ATTGTTATTATT
70650303 ATTGTTATTATT
1 ATTGTTATTATT
70650315 ATT
1 ATT
70650318 TTTGTGTCAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.21, C:0.05, G:0.10, T:0.64
Consensus pattern (12 bp):
ATTGTTATTATT
Found at i:70654605 original size:177 final size:177
Alignment explanation
Indices: 70654304--70655036 Score: 863
Period size: 176 Copynumber: 4.1 Consensus size: 177
70654294 AATTACATGA
* *
70654304 GGAGATAAGATCTTCAATCTTCAGTCTGCTTTTTTGCTACCTCAGGAAGATAAGACTATCA-TCT
1 GGAGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGAC-ATCATTCT
* * ** *
70654368 TCAA-CTGGCTCTCGTGCTACCTCAGAGAGATAAAGTCAGTGGCTAAAATCTGTTCCATTGCCGA
65 TCAACCT-GCTCTCTTGCTACCTCAGAGAGATAAGGTTGGTGG-TAAAATCTGCTCCATTGCCGA
* * * * *
70654432 TACATGGAGATAAGATTCGCCATCTTT-GATCCGCTCCGCTACTA-TTTAG
128 TACATGGAGATAAGATTCACCAT-TTTCGATCTGCTCCACTACAACTTCAG
* * *
70654481 GGAGATAAGATTTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTATCA-TCT
1 GGAGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGAC-ATCATTCT
* * * * * * *
70654545 TCAACCTACTCTTTTGCTACCTTAGATAGATAAGGCTGGTGGCTTAAATCTGCCCCATTGCCGAT
65 TCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTTGGTGG-TAAAATCTGCTCCATTGCCGAT
* * * * *
70654610 ACATGGAGATAAGATT-AGCCATCTGCGAAAATCTACTCCGCTGCAACTTCAG
129 ACATGGAGATAAGATTCA-CCATTTTCG---ATCTGCTCCACTACAACTTCAG
* * *
70654662 GGAGACAAAATCTTCAAT-TCTCAATCTGCTTTCTTGCTACCTCAGAAAGATAAGACA-CATTCT
1 GGAGATAAGATCTTCAATCT-TCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACATCATTCT
* * * *
70654725 TCAACTTGCTCTCTTGCTACCTTAGAGAGATGAGATTGGTGGTAAAATCTGCTCCATTGCCGATA
65 TCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTTGGTGGTAAAATCTGCTCCATTGCCGATA
* *
70654790 CATGTAGATAAGATTCACCATTTTCGATCTGCTCCACTGCAACTTCAG
130 CATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTACAACTTCAG
* * * * * *
70654838 GGAGATAAGATTTTTAATCTTTAGTTTACTTTCTTGCTACCTTAGAAAGATAAGAC-TCATTCTT
1 GGAGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACATCATTCTT
* * * *
70654902 CAACCTGCTCTCTTACAACCTCAGAGAGATGAGGTTGGTGGTAAAATCTGCTCCATTTCCGATAC
66 CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTTGGTGGTAAAATCTGCTCCATTGCCGATAC
* * *
70654967 ATGGAGATAAGATTCACCATTTTCGATTTGCTCTACTACAACTTCAT
131 ATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTACAACTTCAG
70655014 GGAGATAAGATCTTCAATCTTCA
1 GGAGATAAGATCTTCAATCTTCA
70655037 CCAATGTCGC
Statistics
Matches: 478, Mismatches: 66, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
176 194 0.41
177 133 0.28
178 2 0.00
179 44 0.09
180 53 0.11
181 52 0.11
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (177 bp):
GGAGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACATCATTCTT
CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTTGGTGGTAAAATCTGCTCCATTGCCGATAC
ATGGAGATAAGATTCACCATTTTCGATCTGCTCCACTACAACTTCAG
Found at i:70660085 original size:612 final size:612
Alignment explanation
Indices: 70658922--70660085 Score: 2247
Period size: 612 Copynumber: 1.9 Consensus size: 612
70658912 TAACAGAACG
70658922 TGTAACACCCCGAACCCGATACCGTCGCCGGAGTCGAACACGAGGTGTTAACAGACTTCAAACCA
1 TGTAACACCCCGAACCCGATACCGTCGCCGGAGTCGAACACGAGGTGTTAACAGACTTCAAACCA
70658987 CTTATTCGACATTTCCCAGACAAGCTGCCGATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
66 CTTATTCGACATTTCCCAGACAAGCTGCCGATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
70659052 AGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATATGCCCATATCC
131 AGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATATGCCCATATCC
* *
70659117 ATAATTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGT
196 ATAATTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTAAAAGTATCCCATGT
70659182 TACAGGGATCGACTACACTGACCCTTGCGCATTACGAATTGGATATCTCCCTGCACAGAGCTTCA
261 TACAGGGATCGACTACACTGACCCTTGCGCATTACGAATTGGATATCTCCCTGCACAGAGCTTCA
*
70659247 ATACTGATGTTGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTGTACATATATGGCATGA
326 ATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTGTACATATATGGCATGA
**
70659312 CTCCTAATTATCTCTGGTTAATTTATAATAAATCTCCAAAGTCGGAACAGGGAATCCAGAAACCG
391 CAACTAATTATCTCTGGTTAATTTATAATAAATCTCCAAAGTCGGAACAGGGAATCCAGAAACCG
*
70659377 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTGTCCATATGATCTTTTCGTTA
456 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTATCCATATGATCTTTTCGTTA
70659442 CTTCTATATGAAAATAGACTCATCGAGCTTCGCCTACATACGTGCTATGGTAGTCCTAGAACCGA
521 CTTCTATATGAAAATAGACTCATCGAGCTTCGCCTACATACGTGCTATGGTAGTCCTAGAACCGA
70659507 CTAAACCTGACTCTGATACCAATTAAA
586 CTAAACCTGACTCTGATACCAATTAAA
70659534 TGTAACACCCCGAACCCGATACCGTCGCCGGAGTCGAACACGAGGTGTTAACAGACTTCAAACCA
1 TGTAACACCCCGAACCCGATACCGTCGCCGGAGTCGAACACGAGGTGTTAACAGACTTCAAACCA
*
70659599 CTTATTCGACATTTCCTAGACAAGCTGCCGATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
66 CTTATTCGACATTTCCCAGACAAGCTGCCGATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
*
70659664 AGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATATGCCCATCTCC
131 AGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATATGCCCATATCC
*
70659729 ATAATTTTTTCTAGAATTTTTGGTCTGGCCAATTAGTACAGTTTATTAGTAAAAGTATCCCATGT
196 ATAATTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTAAAAGTATCCCATGT
70659794 TACAGGGATCGACTACACTGACCCTTGCGCATTACGAATTGGATATCTCCCTGCACAGAGCTTCA
261 TACAGGGATCGACTACACTGACCCTTGCGCATTACGAATTGGATATCTCCCTGCACAGAGCTTCA
70659859 ATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTGTACATATATGGCATGA
326 ATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTGTACATATATGGCATGA
70659924 CAACTAATTATCTCTGGTTAATTTATAATAAATCTCCAAAGTCGGAACAGGGAATCCAGAAACCG
391 CAACTAATTATCTCTGGTTAATTTATAATAAATCTCCAAAGTCGGAACAGGGAATCCAGAAACCG
70659989 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTATCCATATGATCTTTTCGTTA
456 TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTATCCATATGATCTTTTCGTTA
70660054 CTTCTATATGAAAATAGACTCATCGAGCTTCG
521 CTTCTATATGAAAATAGACTCATCGAGCTTCG
70660086 AATACATAAT
Statistics
Matches: 543, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
612 543 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (612 bp):
TGTAACACCCCGAACCCGATACCGTCGCCGGAGTCGAACACGAGGTGTTAACAGACTTCAAACCA
CTTATTCGACATTTCCCAGACAAGCTGCCGATCTGCGTACTAGTCGCTTTAAAAATCATATCTTG
AGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATATGCCCATATCC
ATAATTTTTTCTAGAATTTTTGGTCAGGCCAATTAGTACAGTTTATTAGTAAAAGTATCCCATGT
TACAGGGATCGACTACACTGACCCTTGCGCATTACGAATTGGATATCTCCCTGCACAGAGCTTCA
ATACTGATGTCGTTTGTTTCTATAGAAACTAGACTCAGAGAGGAATCTGTACATATATGGCATGA
CAACTAATTATCTCTGGTTAATTTATAATAAATCTCCAAAGTCGGAACAGGGAATCCAGAAACCG
TTCTGGCCCTGTCTCACGAGAACCTGAATATCTCTTAACATACTATCCATATGATCTTTTCGTTA
CTTCTATATGAAAATAGACTCATCGAGCTTCGCCTACATACGTGCTATGGTAGTCCTAGAACCGA
CTAAACCTGACTCTGATACCAATTAAA
Found at i:70661137 original size:28 final size:28
Alignment explanation
Indices: 70661074--70661279 Score: 281
Period size: 28 Copynumber: 7.4 Consensus size: 28
70661064 ATAATAAGTC
* *
70661074 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70661101 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70661129 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70661157 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70661185 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
70661213 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
* * * *
70661240 CGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAA-TCAAACT
70661269 CGCACACTTAG
1 CGCACACTTAG
70661280 CACCAATCTC
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
27 43 0.26
28 108 0.66
29 13 0.08
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:70668319 original size:28 final size:28
Alignment explanation
Indices: 70668256--70668461 Score: 272
Period size: 28 Copynumber: 7.4 Consensus size: 28
70668246 ATAATAAGTC
* *
70668256 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70668283 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
70668311 CGCACACTTAGTGCCACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70668339 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
70668367 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
70668395 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
* * * *
70668422 CGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAA-TCAAACT
70668451 CGCACACTTAG
1 CGCACACTTAG
70668462 CGCCAATCTC
Statistics
Matches: 162, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
27 43 0.27
28 106 0.65
29 13 0.08
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:70670835 original size:40 final size:40
Alignment explanation
Indices: 70670791--70670876 Score: 172
Period size: 40 Copynumber: 2.1 Consensus size: 40
70670781 TATACAAAGA
70670791 ATGAATGAATTTGGTAATTATTGTTTTGTGTGATATGTTT
1 ATGAATGAATTTGGTAATTATTGTTTTGTGTGATATGTTT
70670831 ATGAATGAATTTGGTAATTATTGTTTTGTGTGATATGTTT
1 ATGAATGAATTTGGTAATTATTGTTTTGTGTGATATGTTT
70670871 ATGAAT
1 ATGAAT
70670877 AAAAGAATGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (40 bp):
ATGAATGAATTTGGTAATTATTGTTTTGTGTGATATGTTT
Found at i:70684241 original size:19 final size:19
Alignment explanation
Indices: 70684217--70684260 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
70684207 TTTTACATAT
*
70684217 TTACAAATTAGTCCTTAAA
1 TTACAAATTAATCCTTAAA
*
70684236 TTACAATTTAATCCTTAAA
1 TTACAAATTAATCCTTAAA
*
70684255 TCACAA
1 TTACAA
70684261 TTTCATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.36
Consensus pattern (19 bp):
TTACAAATTAATCCTTAAA
Found at i:70684585 original size:18 final size:17
Alignment explanation
Indices: 70684562--70684595 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
70684552 TATGATATTT
70684562 TTTTAATTATTTATCATC
1 TTTTAATTATTT-TCATC
70684580 TTTTAATTATTTTCAT
1 TTTTAATTATTTTCAT
70684596 TTCCAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAATTATTTTCATC
Found at i:70695398 original size:25 final size:25
Alignment explanation
Indices: 70695352--70695400 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
70695342 CTTTATTATT
*
70695352 ATCATTATGAAGAATTACGTGATTA
1 ATCATTATCAAGAATTACGTGATTA
* * *
70695377 ATCATTATCATGAGTTATGTGATT
1 ATCATTATCAAGAATTACGTGATT
70695401 GGTCTTCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (25 bp):
ATCATTATCAAGAATTACGTGATTA
Found at i:70702942 original size:20 final size:20
Alignment explanation
Indices: 70702917--70702955 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
70702907 TTAAAAGCTA
*
70702917 AAATATAAAAATTAAAAATT
1 AAATATAAAAATAAAAAATT
*
70702937 AAATATAAATATAAAAAAT
1 AAATATAAAAATAAAAAAT
70702956 GGACAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAATATAAAAATAAAAAATT
Found at i:70710540 original size:38 final size:38
Alignment explanation
Indices: 70710484--70710591 Score: 162
Period size: 38 Copynumber: 2.8 Consensus size: 38
70710474 TAATACACTG
* *
70710484 GCACGAAGCCTACTAGGCACAGAGCCCGAATATCACCA
1 GCACAAAGCCTGCTAGGCACAGAGCCCGAATATCACCA
* **
70710522 GCACAAAGCCTGCTAGGCACAAAGCAGGAATATCACCA
1 GCACAAAGCCTGCTAGGCACAGAGCCCGAATATCACCA
*
70710560 GCACAAAGCCTGCTAGGGACAGAGCCCGAATA
1 GCACAAAGCCTGCTAGGCACAGAGCCCGAATA
70710592 ACATTACGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.36, C:0.31, G:0.23, T:0.10
Consensus pattern (38 bp):
GCACAAAGCCTGCTAGGCACAGAGCCCGAATATCACCA
Found at i:70715266 original size:40 final size:40
Alignment explanation
Indices: 70715204--70715450 Score: 226
Period size: 40 Copynumber: 6.2 Consensus size: 40
70715194 CGGATGATAA
* *
70715204 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGT-GCTAATAT
* *
70715244 CTGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGCTAATAT
* * *
70715284 CCGGGCTAAGTCCCGAAGGCGTTTGTGC--GAGCTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGCTA--ATAT
* * *
70715324 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGCTAATAT
* *
70715362 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGCTAATAT
* *
70715403 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-GCTAATAT
70715443 CC-GGCTAA
1 CCGGGCTAA
70715451 ACTCCGAAGG
Statistics
Matches: 172, Mismatches: 22, Indels: 27
0.78 0.10 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 38 0.22
40 122 0.71
41 5 0.03
42 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGCTAATAT
Found at i:70715460 original size:79 final size:79
Alignment explanation
Indices: 70715246--70715450 Score: 261
Period size: 79 Copynumber: 2.6 Consensus size: 79
70715236 GGCTAATTCT
*
70715246 GGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * ** *
70715311 CGAGCTATTATGTCT
65 CAAGCTACTATAACC
* *
70715326 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
70715390 CAAGTTACTATAACC
65 CAAGCTACTATAACC
* * *
70715405 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATATCCGGGCTAA
70715451 ACTCCGAAGG
Statistics
Matches: 109, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 72 0.66
80 36 0.33
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTATAACC
Found at i:70732272 original size:40 final size:40
Alignment explanation
Indices: 70732211--70732456 Score: 233
Period size: 40 Copynumber: 6.2 Consensus size: 40
70732201 GGATGATAAT
* *
70732211 CGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-TC
1 CGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATATC
* *
70732251 TGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATC
* *
70732291 CGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATGTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATATC
* *
70732331 TGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTATAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT-C
* * *
70732370 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATC
* *
70732410 CGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATATC
70732450 C-GGCTAA
1 CGGGCTAA
70732457 ACTCCGAAGG
Statistics
Matches: 173, Mismatches: 20, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 38 0.22
40 125 0.72
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATATC
Found at i:70732415 original size:79 final size:80
Alignment explanation
Indices: 70732252--70732433 Score: 276
Period size: 79 Copynumber: 2.3 Consensus size: 80
70732242 GGCTAATTCT
*
70732252 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * ** *
70732317 CGAGCTATTATGTCT
66 CAAGCTACTATAACC
* *
70732332 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
70732396 CAAGTTACTATAACC
66 CAAGCTACTATAACC
70732411 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
70732434 AGCTAGTGGC
Statistics
Matches: 93, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 58 0.62
80 35 0.38
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACTATAACC
Found at i:70732466 original size:79 final size:79
Alignment explanation
Indices: 70732252--70732456 Score: 270
Period size: 79 Copynumber: 2.6 Consensus size: 79
70732242 GGCTAATTCT
*
70732252 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * ** *
70732317 CGAGCTATTATGTCT
65 CAAGCTACTATAACC
*
70732332 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
70732396 CAAGTTACTATAACC
65 CAAGCTACTATAACC
* * *
70732411 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
70732457 ACTCCGAAGG
Statistics
Matches: 110, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 72 0.65
80 37 0.34
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTATAACC
Found at i:70736980 original size:145 final size:147
Alignment explanation
Indices: 70736753--70737051 Score: 469
Period size: 145 Copynumber: 2.0 Consensus size: 147
70736743 AGTTTAATAC
* *
70736753 AAGGTTGGTTTCTTCTCATCTCTACAAGACTTTTTTAAGATTGTCCTAACATTCTTGAAATGAAC
1 AAGGTTGGTTTCTTCGCATCTCTACAAGACTTTTTTAAGATTGTCCTAAAATTCTTGAAATGAAC
*
70736818 TTCATATACTGAAAAATCATCCATAAATACATCCAAGCCTTCTTCTAACATGTCAGCAAAAATAG
66 TCCATATACTGAAAAATCATCCATAAATACATCCAAGCCTTCTTCTAACATGTCAGCAAAAATAG
70736883 CCGTCATACATCTCATA
131 CCGTCATACATCTCATA
* *
70736900 AAGGTTGGTTTC-TCGCATCTCTGCAAGAC-TTTTTAAGATTTTCC-AAAATTCTTGAAATGAAT
1 AAGGTTGGTTTCTTCGCATCTCTACAAGACTTTTTTAAGATTGTCCTAAAATTCTTGAAATGAA-
* * * *
70736962 CTCCTTATACTGAGAAATCATCCATAAATACATCCAAGCCTTCTTCTAGCATGTCAGTAAAAATA
65 CTCCATATACTGAAAAATCATCCATAAATACATCCAAGCCTTCTTCTAACATGTCAGCAAAAATA
*
70737027 GTCGTCATACATCTCATA
130 GCCGTCATACATCTCATA
*
70737045 GAGGTTG
1 AAGGTTG
70737052 TCGGGGCATT
Statistics
Matches: 140, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
144 16 0.11
145 97 0.69
146 15 0.11
147 12 0.09
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (147 bp):
AAGGTTGGTTTCTTCGCATCTCTACAAGACTTTTTTAAGATTGTCCTAAAATTCTTGAAATGAAC
TCCATATACTGAAAAATCATCCATAAATACATCCAAGCCTTCTTCTAACATGTCAGCAAAAATAG
CCGTCATACATCTCATA
Found at i:70741259 original size:8 final size:8
Alignment explanation
Indices: 70741246--70741274 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
70741236 CCCTGCTTTT
70741246 AAAATTTA
1 AAAATTTA
70741254 AAAATTTA
1 AAAATTTA
70741262 AAAATTTA
1 AAAATTTA
70741270 AAAAT
1 AAAAT
70741275 ATTTTATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
AAAATTTA
Found at i:70741713 original size:21 final size:19
Alignment explanation
Indices: 70741687--70741725 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
70741677 ATCTTTCTCA
70741687 TTTATAAATTTAAATAATTTG
1 TTTATAAA-TT-AATAATTTG
*
70741708 TTTATATATTAATAATTT
1 TTTATAAATTAATAATTT
70741726 ATTTTATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 2 0.12
21 7 0.41
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
TTTATAAATTAATAATTTG
Found at i:70741974 original size:21 final size:21
Alignment explanation
Indices: 70741950--70741991 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
70741940 TTAATACCAA
70741950 CATAGAATTT-AAAAGAGTAAT
1 CATA-AATTTCAAAAGAGTAAT
*
70741971 CATAATTTTCAAAAGAGTAAT
1 CATAAATTTCAAAAGAGTAAT
70741992 TAATTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.31
Consensus pattern (21 bp):
CATAAATTTCAAAAGAGTAAT
Found at i:70742166 original size:26 final size:28
Alignment explanation
Indices: 70742133--70742185 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
70742123 ACTTTCATGA
70742133 ATAAAAAT-TAT-AGGACTTATTTAACT
1 ATAAAAATATATAAGGACTTATTTAACT
70742159 ATAAAAATACTATAAGGACTTATTTAA
1 ATAAAAATA-TATAAGGACTTATTTAA
70742186 ATAAAGTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 8 0.33
28 3 0.12
29 13 0.54
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.36
Consensus pattern (28 bp):
ATAAAAATATATAAGGACTTATTTAACT
Found at i:70760762 original size:25 final size:25
Alignment explanation
Indices: 70760728--70760797 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
70760718 CTCTTTTAAT
*
70760728 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
70760753 AATTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
* *
70760778 AACTGGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
70760798 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGGTA
Done.