Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 216 of 316
Found at i:70761055 original size:27 final size:27
Alignment explanation
Indices: 70761025--70761162 Score: 177
Period size: 27 Copynumber: 5.1 Consensus size: 27
70761015 CAAGAGAATC
*
70761025 TCGGTAATTCTACCCTACAGGGTTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
70761052 TCGGTATTTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
** *
70761079 TTAGTAATTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * * *
70761106 TCGATAATTCTACCCTACAGAGTTATA
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
70761133 TCAGTAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
70761160 TCG
1 TCG
70761163 ATATTTTACA
Statistics
Matches: 91, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:70761066 original size:54 final size:53
Alignment explanation
Indices: 70761004--70761168 Score: 181
Period size: 54 Copynumber: 3.1 Consensus size: 53
70760994 AAAAATGGTA
* * * * *
70761004 ATTT-TACCCCACAAGAGAATCTCGGTAATTCTACCCTACAGGGTTATTTCGGT
1 ATTTCTACCCTACAAGAGTATATCAGTAATTCTACCCTACAGGG-TATTTCGAT
* * * *
70761057 ATTTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGAT
1 ATTTCTACCCTACAAGAGTATATCAGTAATTCTACCCTAC-AGGGTATTTCGAT
* *
70761111 AATTCTACCCTAC-AGAGTTATATCAGTAATTCTACCCTATAGGGGTATTTCGAT
1 ATTTCTACCCTACAAGAG-TATATCAGTAATTCTACCCTACA-GGGTATTTCGAT
70761165 ATTT
1 ATTT
70761169 TACAAATCGA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
53 7 0.08
54 82 0.88
55 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (53 bp):
ATTTCTACCCTACAAGAGTATATCAGTAATTCTACCCTACAGGGTATTTCGAT
Found at i:70761144 original size:81 final size:81
Alignment explanation
Indices: 70761001--70761160 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 81
70760991 GGGAAAAATG
* * * * * *
70761001 GTAATTTTACCCCACAAGAGAATCTCGGTAATTCTACCCTACAGGGTTATTTCGGTATTTCTACC
1 GTAATTCTACCCCACAAGAGAATCTCGATAATTCTACCCTACAGAGTTATATCAGTAATTCTACC
70761066 CTACAGGGGTATTTTA
66 CTACAGGGGTATTTTA
* * * *
70761082 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGAGTTATATCAGTAATTCTACC
1 GTAATTCTACCCCACAAGAGAATCTCGATAATTCTACCCTACAGAGTTATATCAGTAATTCTACC
*
70761147 CTATAGGGGTATTT
66 CTACAGGGGTATTT
70761161 CGATATTTTA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCCACAAGAGAATCTCGATAATTCTACCCTACAGAGTTATATCAGTAATTCTACC
CTACAGGGGTATTTTA
Found at i:70761213 original size:27 final size:27
Alignment explanation
Indices: 70761155--70761306 Score: 121
Period size: 27 Copynumber: 5.7 Consensus size: 27
70761145 CCCTATAGGG
*
70761155 GTATTTCGAT-ATTTTACAAATC-GAGA
1 GTATTTCGATAATTTTACAAACCAG-GA
* * *
70761181 GCATTTCGATAATTTCACAAATCAGGA
1 GTATTTCGATAATTTTACAAACCAGGA
* * * *
70761208 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTCGATAATTTTACAAACCAGGA
* * *
70761235 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTCGATAATTTTACAAACCAGGA
* * *
70761262 GTATTT-TAGTAATTTTACAAACTAGGG
1 GTATTTCGA-TAATTTTACAAACCAGGA
* *
70761289 GTATTTTGGTAATTTTAC
1 GTATTTCGATAATTTTAC
70761307 TGATTGAAGG
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.08
27 97 0.91
28 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
GTATTTCGATAATTTTACAAACCAGGA
Found at i:70761276 original size:81 final size:81
Alignment explanation
Indices: 70761190--70761357 Score: 205
Period size: 81 Copynumber: 2.1 Consensus size: 81
70761180 AGCATTTCGA
* *
70761190 TAATTTCACAAA-TCAGGAGTATTTTGGTAATTTTACAAGCCAG-GGGTATTTTGGTAATTTTAC
1 TAATTTCACAAACT-AGGAGTATTTTGGTAATTTTAC-AGACAGAAGGTATTTTGGTAATTTTAC
* *
70761253 AAACCAGGGGTATTTTAG
64 AAACCAAGGGTATTTCAG
* * * ** **
70761271 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGATTGAAGGTATTTTGGTAATTTTGTAA
1 TAATTTCACAAACTAGGAGTATTTTGGTAATTTTACAGACAGAAGGTATTTTGGTAATTTTACAA
70761336 ACCAAGGGTATTTCAG
66 ACCAAGGGTATTTCAG
70761352 TAATTT
1 TAATTT
70761358 TGTAAATTGA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
80 2 0.03
81 71 0.96
82 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
TAATTTCACAAACTAGGAGTATTTTGGTAATTTTACAGACAGAAGGTATTTTGGTAATTTTACAA
ACCAAGGGTATTTCAG
Found at i:70761304 original size:54 final size:54
Alignment explanation
Indices: 70761190--70761306 Score: 180
Period size: 54 Copynumber: 2.2 Consensus size: 54
70761180 AGCATTTCGA
* * * *
70761190 TAATTTCACAAATCAGGAGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGAGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
* *
70761244 TAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGAGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
70761298 TAATTTTAC
1 TAATTTTAC
70761307 TGATTGAAGG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
TAATTTTACAAACCAGGAGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
Found at i:70761319 original size:54 final size:54
Alignment explanation
Indices: 70761190--70761358 Score: 171
Period size: 54 Copynumber: 3.1 Consensus size: 54
70761180 AGCATTTCGA
* * *
70761190 TAATTTCACAAATCAG-GAGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGG
1 TAATTTTACAAACCAGAG-GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
* * *
70761244 TAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
** ** ** * **
70761298 TAATTTTACTGA-TTGAAGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAG
1 TAATTTTACAAACCAG-AGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
70761352 TAATTTT
1 TAATTTT
70761359 GTAAATTGAG
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 94 0.98
55 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
TAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
Found at i:70761370 original size:27 final size:27
Alignment explanation
Indices: 70761287--70761660 Score: 84
Period size: 27 Copynumber: 13.9 Consensus size: 27
70761277 TACAAACTAG
* * *
70761287 GGGTATTTTGGTAATTTTACT-GATTGA
1 GGGTATTTCGGTAATTTT-GTAAATTGA
* * ***
70761314 AGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCGGTAATTTTGTAAATTGA
*
70761341 GGGTATTTCAGTAATTTTGTAAATTGA
1 GGGTATTTCGGTAATTTTGTAAATTGA
*** * *
70761368 GGGTAAAACGGTAATTCTATAAATTGA
1 GGGTATTTCGGTAATTTTGTAAATTGA
*** * * * *
70761395 GGGTAAAACGGTAATTCTATAAGTCGA
1 GGGTATTTCGGTAATTTTGTAAATTGA
** * * * *
70761422 GGGTAAAAT-AGTAATTCTATAAATCGA
1 GGGT-ATTTCGGTAATTTTGTAAATTGA
** * *
70761449 GGGTAAAAT-GGTAATTCTGTAAATCGA
1 GGGT-ATTTCGGTAATTTTGTAAATTGA
** * * * **
70761476 GGGTAAAAT-GATAATTCTATAAATCAA
1 GGGT-ATTTCGGTAATTTTGTAAATTGA
** * *
70761503 GGGTAAAAT-GGTAATTTTATAAATCGA
1 GGGT-ATTTCGGTAATTTTGTAAATTGA
**
70761530 GGGTAAAAT-GGTAATTTTGTAAATT-A
1 GGGT-ATTTCGGTAATTTTGTAAATTGA
*** * *
70761556 GGGGTAAAACGGTAATTCTATAAATTGA
1 -GGGTATTTCGGTAATTTTGTAAATTGA
*** *
70761584 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTATTTCGGTAATTTTGTAAATTGA
70761611 GGGTACTTT-GGTAA-TTT-TACAATTCGA
1 GGGTA-TTTCGGTAATTTTGTA-AATT-GA
* * *
70761638 GGGCATTTCAGTAATTTGGTAAA
1 GGGTATTTCGGTAATTTTGTAAA
70761661 CTAAAGTATT
Statistics
Matches: 290, Mismatches: 46, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
25 2 0.01
26 14 0.05
27 264 0.91
28 8 0.03
29 2 0.01
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.34
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTGTAAATTGA
Found at i:70761381 original size:81 final size:81
Alignment explanation
Indices: 70761234--70761383 Score: 185
Period size: 81 Copynumber: 1.9 Consensus size: 81
70761224 ACAAGCCAGG
* * ****
70761234 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTAAAACGGT
70761299 AATTTTACTGATTGAA
66 AATTTTACTGATTGAA
** ** *
70761315 GGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAA-TTGAGGGTAAAACGG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTACAAACTAG-GGGTAAAACGG
70761379 TAATT
65 TAATT
70761384 CTATAAATTG
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
80 2 0.04
81 55 0.96
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.41
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTACAAACTAGGGGTAAAACGGT
AATTTTACTGATTGAA
Found at i:70761626 original size:54 final size:54
Alignment explanation
Indices: 70761351--70761615 Score: 334
Period size: 54 Copynumber: 4.9 Consensus size: 54
70761341 GGGTATTTCA
* * * * * *
70761351 GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* *
70761405 GTAATTCTATAAGTCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* * *
70761459 GTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
* * * * *
70761513 GTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGA-GGGTAAAATG
* * * *
70761567 GTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
70761616 CTTTGGTAAT
Statistics
Matches: 185, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 183 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
Found at i:70761628 original size:81 final size:81
Alignment explanation
Indices: 70761351--70761615 Score: 379
Period size: 81 Copynumber: 3.3 Consensus size: 81
70761341 GGGTATTTCA
* * * *
70761351 GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTATA
1 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATA
* *
70761416 AGTCGAGGGTAAAATA
66 AATCGAGGGTAAAATG
* * * *
70761432 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATA
1 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATA
*
70761497 AATCAAGGGTAAAATG
66 AATCGAGGGTAAAATG
*
70761513 GTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATT-AGGGGTAAAACGGTAATTCTAT
1 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGA-GGGTAAAACGGTAATTCTAT
* *
70761577 AAATTGAGGGTAAAACG
65 AAATCGAGGGTAAAATG
*
70761594 GTAATTTTGTAAATCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
70761616 CTTTGGTAAT
Statistics
Matches: 163, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
80 1 0.01
81 162 0.99
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (81 bp):
GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:70776432 original size:27 final size:26
Alignment explanation
Indices: 70776384--70776443 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
70776374 GCGAGGCTGC
*
70776384 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
70776411 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
70776437 CAAATAT
1 CAGATAT
70776444 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70776532 original size:27 final size:26
Alignment explanation
Indices: 70776484--70776535 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70776474 GCGAGGCTGC
*
70776484 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
70776510 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
70776536 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70785680 original size:43 final size:42
Alignment explanation
Indices: 70785614--70785734 Score: 116
Period size: 42 Copynumber: 2.9 Consensus size: 42
70785604 AGCATATACA
** * *
70785614 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCAAACA-CG
* * ** * *
70785657 ATGCCACTATCCCAGACAAGGTCTTACACAAAATCAGATACG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCAAACACG
* * *
70785699 ATGCCAATGTCCCAGATATGGTCTTACATGATATCA
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCA
70785735 CATATCAGAA
Statistics
Matches: 61, Mismatches: 17, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
42 31 0.51
43 30 0.49
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAATATCCCAGACATGGTCTTACATGAAATCAAACACG
Found at i:70785714 original size:42 final size:42
Alignment explanation
Indices: 70785609--70785726 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 42
70785599 CGGAAAGCAT
* * * ***
70785609 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACAAAATCAA
* * * * *
70785651 ACATCGATGCCACTATCCCAGACAAGGTCTTACACAAAATCAG
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACAAAATCAA
*
70785694 ATACGATGCCAATGTCCCAGATATGGTCTTACA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACA
70785727 TGATATCACA
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
42 28 0.47
43 31 0.53
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACAAAATCAA
Found at i:70789788 original size:40 final size:40
Alignment explanation
Indices: 70789742--70789928 Score: 240
Period size: 39 Copynumber: 4.7 Consensus size: 40
70789732 ACTACTTGCT
70789742 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
70789782 CAAATGCCTTCGGGACTTAGCCCGGTTCA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * *
70789821 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
70789861 CAATTGCCTTCGGG-TTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
70789900 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
70789929 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 66 0.52
40 57 0.45
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:70789845 original size:79 final size:78
Alignment explanation
Indices: 70789742--70789928 Score: 252
Period size: 79 Copynumber: 2.4 Consensus size: 78
70789732 ACTACTTGCT
*
70789742 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAATAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
*
70789806 G-TTCAATAACTCGCA
64 GATT-AATAACTAGCA
* * * *
70789821 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGTTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCCGG-
* *
70789886 ATTAGTCACTAGCA
65 ATTAATAACTAGCA
70789900 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
70789929 CATCCGAATA
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
78 9 0.09
79 83 0.87
80 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
TTAATAACTAGCA
Found at i:70793032 original size:38 final size:38
Alignment explanation
Indices: 70792990--70793368 Score: 220
Period size: 38 Copynumber: 9.0 Consensus size: 38
70792980 TTTCAAATTA
70792990 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
70793028 ACATGTTTAACCGTGGAATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
70793069 GAATCAATATATGTAACCGTGGCATATGCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * **
70793113 ACATGTTTAACCGTGGTATATCCACTTAGCACCATATTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCA-CGT--T
* * * *
70793154 GAATCAATATATGTAATCGCGGCATATCCACTTAACACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
*
70793198 ACATGTTTAACCGT-GCTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGC-ATATCCACTTAGCACCACG-T--T
* * *
70793239 GAATCAATATATGTAACCGTGGCATATCCACTTTGTACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
70793283 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGCATATCCACTTAGCACCACGTT
** *
70793331 ACACATATAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
70793369 TTTTTCATTC
Statistics
Matches: 267, Mismatches: 37, Indels: 74
0.71 0.10 0.20
Matches are distributed among these distances:
37 2 0.01
38 112 0.42
39 3 0.01
40 8 0.03
41 6 0.02
42 5 0.02
43 3 0.01
44 6 0.02
45 9 0.03
46 5 0.02
47 74 0.28
48 34 0.13
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:70793104 original size:47 final size:47
Alignment explanation
Indices: 70793035--70793331 Score: 299
Period size: 47 Copynumber: 6.7 Consensus size: 47
70793025 GTTACATGTT
*
70793035 TAACCGTGGAATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
70793082 TAACCGTGGCATATGCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* **
70793120 TAACCGTGGTATATCCACTTAGCACCATATTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
70793167 TAATCGCGGCATATCCACTTAACACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
70793205 TAACCGT-GCTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGC-ATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
70793252 TAACCGTGGCATATCCACTTTGTACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* *
70793300 TAATCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA
70793332 CACATATAAC
Statistics
Matches: 202, Mismatches: 27, Indels: 41
0.75 0.10 0.15
Matches are distributed among these distances:
37 2 0.01
38 48 0.24
39 4 0.02
40 6 0.03
41 4 0.02
42 2 0.01
43 2 0.01
44 4 0.02
45 6 0.03
46 4 0.02
47 77 0.38
48 43 0.21
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:70793140 original size:85 final size:85
Alignment explanation
Indices: 70792997--70793288 Score: 494
Period size: 85 Copynumber: 3.4 Consensus size: 85
70792987 TTAACATGTA
*
70792997 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGAATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
70793062 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
70793082 TAACCGTGGCATATGCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
**
70793147 TATTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * * *
70793167 TAATCGCGGCATATCCACTTAACACCACGTTACATGTTTAACCGTGCTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
70793232 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* *
70793252 TAACCGTGGCATATCCACTTTGTACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
70793289 ATCAATATGT
Statistics
Matches: 191, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 191 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:70793314 original size:48 final size:48
Alignment explanation
Indices: 70793200--70793368 Score: 189
Period size: 48 Copynumber: 3.8 Consensus size: 48
70793190 ACCACGTTAC
* *
70793200 ATGTTTAACCGTGCTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
* * * * *
70793247 ATATGTAACCGTGGCATATCCACTTTGTACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
*
70793295 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAC----A-C-AT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
70793337 A----TAACCGTGGTATATCCACTTAGCACCACGTT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTT
70793369 TTTTTCATTC
Statistics
Matches: 108, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
38 30 0.28
42 3 0.03
43 1 0.01
44 1 0.01
47 31 0.29
48 42 0.39
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAAT
Found at i:70793326 original size:133 final size:132
Alignment explanation
Indices: 70793120--70793368 Score: 363
Period size: 133 Copynumber: 1.9 Consensus size: 132
70793110 GTTACATGTT
* *
70793120 TAACCGTGGTATATCCACTTAGCACCATATTAATGAATCAATATATGTAATCGCGGCATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAATCGCGGCATATCCAC
** *
70793185 TTAACACCACGTTACATGTTTAACCGTGCTATATCCACTTAGCACCACGTTAATGAATCAATATA
66 TTAACACCACGTTACACATATAACCGTGCTATATCCACTTAGCACCACGTTAATGAATCAATATA
70793250 TG
131 TG
* * * * * * *
70793252 TAACCGTGGCATATCCACTTTGTACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACATTA-ATGAATCAATATATGTAATCGCGGCATATCCA
* *
70793317 CTTAGCACCACGTTACACATATAACCGTGGTATATCCACTTAGCACCACGTT
65 CTTAACACCACGTTACACATATAACCGTGCTATATCCACTTAGCACCACGTT
70793369 TTTTTCATTC
Statistics
Matches: 102, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
132 27 0.26
133 75 0.74
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAATCGCGGCATATCCAC
TTAACACCACGTTACACATATAACCGTGCTATATCCACTTAGCACCACGTTAATGAATCAATATA
TG
Found at i:70798663 original size:42 final size:43
Alignment explanation
Indices: 70798564--70798684 Score: 138
Period size: 42 Copynumber: 2.8 Consensus size: 43
70798554 AGCATATACA
* * * *
70798564 ATGCCAACGTCCCAAAC-GTGGTCTTACATGTAATCAAACATGG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAACATGG
* * *
70798607 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAGATA-GG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAACATGG
* *
70798649 ATGCCAATGTCCCAGACATGGTCTTACACGATATCA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCA
70798685 CATATCGGAA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 35 0.52
43 31 0.46
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAACATGG
Found at i:70801161 original size:22 final size:22
Alignment explanation
Indices: 70801136--70801179 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
70801126 TAGTCATATA
70801136 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
70801158 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
70801180 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:70801239 original size:15 final size:15
Alignment explanation
Indices: 70801199--70801240 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
70801189 TTGTAATTTT
70801199 ATTTT-AATAATA-A
1 ATTTTAAATAATATA
* *
70801212 ATTTAAAACAATATA
1 ATTTTAAATAATATA
70801227 ATTTTAAATAATAT
1 ATTTTAAATAATAT
70801241 TATTCACATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 4 0.17
14 6 0.26
15 13 0.57
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTTTAAATAATATA
Found at i:70801805 original size:14 final size:14
Alignment explanation
Indices: 70801786--70801823 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
70801776 CCAGAAAAGT
70801786 AAATCATTTTCCAG
1 AAATCATTTTCCAG
70801800 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
70801814 AAGTCATTTT
1 AAATCATTTT
70801824 TAGTGAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:70802415 original size:26 final size:27
Alignment explanation
Indices: 70802377--70802434 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
70802367 AATATTAAAT
* *
70802377 TATTTATATAATTT-TATTTTATATTA
1 TATTTTTAAAATTTATATTTTATATTA
*
70802403 TATTTTTAAAATTTATATTTTCTATTA
1 TATTTTTAAAATTTATATTTTATATTA
70802430 T-TTTT
1 TATTTT
70802435 AAATGGTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 16 0.57
27 12 0.43
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (27 bp):
TATTTTTAAAATTTATATTTTATATTA
Found at i:70805336 original size:35 final size:35
Alignment explanation
Indices: 70805297--70805370 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
70805287 TAACCAAGTC
70805297 TTATACATATCATATTATAACCAACTCAAACCATG
1 TTATACATATCATATTATAACCAACTCAAACCATG
70805332 TTATACATATCATATTATAACCAACTCAAACCATG
1 TTATACATATCATATTATAACCAACTCAAACCATG
70805367 TTAT
1 TTAT
70805371 CATTTTACCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.42, C:0.22, G:0.03, T:0.34
Consensus pattern (35 bp):
TTATACATATCATATTATAACCAACTCAAACCATG
Found at i:70806254 original size:25 final size:25
Alignment explanation
Indices: 70806212--70806318 Score: 78
Period size: 25 Copynumber: 4.3 Consensus size: 25
70806202 GCCATTAACT
*
70806212 AGGAAGCTCCAA-ATAGCCATTTATC
1 AGGAAGCT-CAAGAGAGCCATTTATC
* *
70806237 AGGAAGTTCAAGCGAGCCA--TATC
1 AGGAAGCTCAAGAGAGCCATTTATC
* * * *
70806260 GGGAACCTCTAGAGAGCCATTAATC
1 AGGAAGCTCAAGAGAGCCATTTATC
*
70806285 AGGAAGCTCACAAAGAGCC-TTTAATC
1 AGGAAGCTCA-AGAGAGCCATTT-ATC
*
70806311 GGGAAGCT
1 AGGAAGCT
70806319 TTGAAGAGCC
Statistics
Matches: 62, Mismatches: 15, Indels: 9
0.72 0.17 0.10
Matches are distributed among these distances:
23 18 0.29
24 3 0.05
25 24 0.39
26 17 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (25 bp):
AGGAAGCTCAAGAGAGCCATTTATC
Found at i:70810009 original size:13 final size:14
Alignment explanation
Indices: 70809981--70810013 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
70809971 ACTATCAAAA
70809981 TTTTCAAAATTATT
1 TTTTCAAAATTATT
*
70809995 TTTTGAAAATT-TT
1 TTTTCAAAATTATT
70810008 TTTTCA
1 TTTTCA
70810014 CGACATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (14 bp):
TTTTCAAAATTATT
Found at i:70821575 original size:30 final size:29
Alignment explanation
Indices: 70821528--70821589 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 29
70821518 AGGTTCCATT
70821528 TCAATCATCCATCATGATAAACCTCATCA
1 TCAATCATCCATCATGATAAACCTCATCA
70821557 TCAATCATCCAGTCATGATAAACCTCATCA
1 TCAATCATCCA-TCATGATAAACCTCATCA
70821587 TCA
1 TCA
70821590 TATCTCATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.34
30 21 0.66
ACGTcount: A:0.37, C:0.31, G:0.05, T:0.27
Consensus pattern (29 bp):
TCAATCATCCATCATGATAAACCTCATCA
Found at i:70823224 original size:54 final size:54
Alignment explanation
Indices: 70823142--70823248 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
70823132 TGCCTGGTTC
70823142 AAATTTCTAACATGAACCCTAGCTTGAAATATGGGTAGAAATAGATAGAGCATA
1 AAATTTCTAACATGAACCCTAGCTTGAAATATGGGTAGAAATAGATAGAGCATA
*
70823196 AAATTTCTAACATGAACCCTAGCTTGAAATATGGGTAGAAATGGATAGAGCAT
1 AAATTTCTAACATGAACCCTAGCTTGAAATATGGGTAGAAATAGATAGAGCAT
70823249 GTTACGAGGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (54 bp):
AAATTTCTAACATGAACCCTAGCTTGAAATATGGGTAGAAATAGATAGAGCATA
Found at i:70824455 original size:47 final size:46
Alignment explanation
Indices: 70824393--70824602 Score: 215
Period size: 48 Copynumber: 4.5 Consensus size: 46
70824383 TTTGTATGCT
*
70824393 AGTGTAAGACCATGTTGGACATGGCATCGACATTGATTATGAGAGCC
1 AGTGTAAGACCATGTTGGACATGGCATCGGCATTGA-TATGAGAGCC
* ** * *
70824440 AGTGTAAGACCATGTTGGACATGGCATCTGTGTTGAT-TGTGAGTC
1 AGTGTAAGACCATGTTGGACATGGCATCGGCATTGATATGAGAGCC
* * * * *
70824485 AGTGTAAGACCATGTTGGACATGGCCTTGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTTGGACATGGCATCGGCATTGATATGAGAGCC
* * ** * *
70824531 AGTGTAAGGCCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCC
1 AGTGTAAGACCATGT-T-GGACATGGCATCGGCATTGATATGAGAGCC
70824579 AGTGTAAGACCATGTCTGGGACAT
1 AGTGTAAGACCATGT-T-GGACAT
70824603 AACATCAGTA
Statistics
Matches: 133, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
45 37 0.28
46 19 0.14
47 33 0.25
48 44 0.33
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACCATGTTGGACATGGCATCGGCATTGATATGAGAGCC
Found at i:70824583 original size:48 final size:46
Alignment explanation
Indices: 70824334--70824602 Score: 182
Period size: 48 Copynumber: 5.7 Consensus size: 46
70824324 ATTTGGGGTG
* * *
70824334 ACATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACA
1 ACATGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCCTCA
*** * * * *
70824382 TTTTGT-ATGCTAGTGTAAGACCATGTTGGACATGGCATCGACATTGA
1 ACATGTGA-GCCAGTGTAAGACCATGTTGGACATGGCATCGGC-CTCA
** * * ** **
70824429 TTATGAGAGCCAGTGTAAGACCATGTTGGACATGGCATCTGTGTTG
1 ACATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCCTCA
* * * * * **
70824475 A-TTGTGAGTCAGTGTAAGACCATGTTGGACATGGCCTTGGCATTG
1 ACATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCCTCA
* * * * *
70824520 AGACGAGAGCTAGTGTAAGGCCATGTCTGGGACATGGCATCGGCCTCA
1 ACATGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCCTCA
70824568 ACATGTGAGCCAGTGTAAGACCATGTCTGGGACAT
1 ACATGTGAGCCAGTGTAAGACCATGT-T-GGACAT
70824603 AACATCAGTA
Statistics
Matches: 173, Mismatches: 42, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
45 37 0.21
46 32 0.18
47 38 0.22
48 66 0.38
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (46 bp):
ACATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCCTCA
Found at i:70825867 original size:27 final size:25
Alignment explanation
Indices: 70825837--70825899 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 25
70825827 TAATTTTACC
70825837 AAAATATGAAATTGAGTTAAAATGAAT
1 AAAATATG-AATTGA-TTAAAATGAAT
70825864 AAAATATGAA-T--TTAAAATGAAT
1 AAAATATGAATTGATTAAAATGAAT
70825886 AAAATATGAATTGA
1 AAAATATGAATTGA
70825900 AATATCTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
22 21 0.64
23 1 0.03
25 1 0.03
26 2 0.06
27 8 0.24
ACGTcount: A:0.57, C:0.00, G:0.13, T:0.30
Consensus pattern (25 bp):
AAAATATGAATTGATTAAAATGAAT
Found at i:70825872 original size:11 final size:11
Alignment explanation
Indices: 70825858--70825896 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
70825848 TTGAGTTAAA
70825858 ATGAATAAAAT
1 ATGAATAAAAT
*
70825869 ATGAATTTAAA-
1 ATGAA-TAAAAT
70825880 ATGAATAAAAT
1 ATGAATAAAAT
70825891 ATGAAT
1 ATGAAT
70825897 TGAAATATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 4 0.17
11 16 0.67
12 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.31
Consensus pattern (11 bp):
ATGAATAAAAT
Found at i:70825896 original size:22 final size:22
Alignment explanation
Indices: 70825853--70825897 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
70825843 TGAAATTGAG
70825853 TTAAAATGAATAAAATATGAAT
1 TTAAAATGAATAAAATATGAAT
70825875 TTAAAATGAATAAAATATGAAT
1 TTAAAATGAATAAAATATGAAT
70825897 T
1 T
70825898 GAAATATCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (22 bp):
TTAAAATGAATAAAATATGAAT
Found at i:70826184 original size:40 final size:39
Alignment explanation
Indices: 70826107--70826192 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
70826097 TAACGACTTA
**
70826107 TCGGCTAAAATGGCACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
70826146 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
*
70826186 TTGGCTA
1 TCGGCTA
70826193 TATATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:70829850 original size:40 final size:40
Alignment explanation
Indices: 70829820--70830029 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
70829810 GGACTAAGAT
* * * **
70829820 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
70829860 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
70829900 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
70829940 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
70829980 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
70830019 CCGAAGGCATT
1 CCGAAGGCATT
70830030 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:70837812 original size:40 final size:40
Alignment explanation
Indices: 70837782--70837991 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
70837772 GGACTAAGAT
* * * **
70837782 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
70837822 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
70837862 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
70837902 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
70837942 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
70837981 CCGAAGGCATT
1 CCGAAGGCATT
70837992 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:70850798 original size:49 final size:49
Alignment explanation
Indices: 70850738--70850912 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 49
70850728 CTGGTATGCA
* *
70850738 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
* * * * * * *
70850787 TAGTAGCCTGCACTTAGTATTACACACGTGATCACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCAGGTACACG
* *
70850838 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
70850887 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
70850913 CGTGACCTCA
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 66 0.62
50 2 0.02
51 38 0.36
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
Found at i:70850847 original size:100 final size:100
Alignment explanation
Indices: 70850730--70850917 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
70850720 TAAGCTATCT
* * *
70850730 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCC
*
70850795 TGCACTTAGTATTACACACGTGATCACAGTTTTCA
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
*
70850830 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCC
70850895 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
70850918 CCTCACAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCA
Found at i:70855200 original size:25 final size:25
Alignment explanation
Indices: 70855172--70855223 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
70855162 ATGTTATATT
70855172 TGATTCATGAGTATATGTATATAAG
1 TGATTCATGAGTATATGTATATAAG
*
70855197 TGATTCATGTGTATATGTATATAAG
1 TGATTCATGAGTATATGTATATAAG
70855222 TG
1 TG
70855224 TTAATGTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.21, T:0.42
Consensus pattern (25 bp):
TGATTCATGAGTATATGTATATAAG
Found at i:70857353 original size:13 final size:13
Alignment explanation
Indices: 70857312--70857355 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
70857302 GGGGTAGGAT
70857312 TCTGTTTATCTG-A
1 TCTG-TTATCTGTA
*
70857325 TCTGTATATTTGTA
1 TCTGT-TATCTGTA
70857339 TCTGTTATCTGTA
1 TCTGTTATCTGTA
70857352 TCTG
1 TCTG
70857356 ATATGGACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 1 0.04
13 20 0.74
14 6 0.22
ACGTcount: A:0.16, C:0.14, G:0.16, T:0.55
Consensus pattern (13 bp):
TCTGTTATCTGTA
Found at i:70859005 original size:27 final size:27
Alignment explanation
Indices: 70858953--70859007 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
70858943 TATTGTTCTG
* *
70858953 GTGGCTTTGCCACGTATTCTGATATTA
1 GTGGCTATGCCACGTATTCCGATATTA
*
70858980 GTGGCTATGCCACGT-TTACCGCTATTA
1 GTGGCTATGCCACGTATT-CCGATATTA
70859007 G
1 G
70859008 CAACTTTGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACGTATTCCGATATTA
Found at i:70859056 original size:23 final size:23
Alignment explanation
Indices: 70859001--70859058 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
70858991 ACGTTTACCG
* *
70859001 CTATTAGCAACTTTGCTGCGTTA
1 CTATTAGCAGCTTTGCTGCATTA
*
70859024 CTATTAGCAGCTTTGTTGCATTA
1 CTATTAGCAGCTTTGCTGCATTA
70859047 CTATTAGCAGCT
1 CTATTAGCAGCT
70859059 ACACTGCGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCTGCATTA
Found at i:70870775 original size:9 final size:9
Alignment explanation
Indices: 70870761--70870798 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
70870751 TATGCTCTTC
70870761 TCTTTTTTT
1 TCTTTTTTT
70870770 TCTTTTTTT
1 TCTTTTTTT
*
70870779 TCTTTTAATT
1 TCTTTT-TTT
70870789 TCTTTTTTT
1 TCTTTTTTT
70870798 T
1 T
70870799 TCACGAGCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:70870778 original size:10 final size:10
Alignment explanation
Indices: 70870758--70870800 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
70870748 ACATATGCTC
70870758 TTCTCTTTTTT
1 TTCT-TTTTTT
70870769 TTC-TTTTTT
1 TTCTTTTTTT
**
70870778 TTCTTTTAAT
1 TTCTTTTTTT
70870788 TTCTTTTTTT
1 TTCTTTTTTT
70870798 TTC
1 TTC
70870801 ACGAGCATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 9 0.33
10 15 0.56
11 3 0.11
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:70872485 original size:48 final size:48
Alignment explanation
Indices: 70872409--70872539 Score: 163
Period size: 48 Copynumber: 2.7 Consensus size: 48
70872399 CATTGGGGAA
* **
70872409 TACATTGATTTGGCTTCGGGCCACGATATCGGCACATCAGGTGCAAGT
1 TACATTGATTTGGCTTCGGGCCATGATATCGGCACATCAGGAACAAGT
** * *
70872457 TACATTGATTTGGCTTCGGGCCATGATATCGAAACTTCGGGAACAAGT
1 TACATTGATTTGGCTTCGGGCCATGATATCGGCACATCAGGAACAAGT
* * * *
70872505 TACATTAATTTGGTTTCGAGCCATGATATTGGCAC
1 TACATTGATTTGGCTTCGGGCCATGATATCGGCAC
70872540 TTAGGGTGTG
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (48 bp):
TACATTGATTTGGCTTCGGGCCATGATATCGGCACATCAGGAACAAGT
Found at i:70877687 original size:34 final size:34
Alignment explanation
Indices: 70877623--70877688 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
70877613 CGTCGCTGAA
*
70877623 AATCACAAACTCTTTTCCCCACTCAGGTTGCACT
1 AATCACAAACTCTTTTCCCCACTCAAGTTGCACT
** *
70877657 AATCACAAACTCTTTTCCTGACTTAAGTTGCA
1 AATCACAAACTCTTTTCCCCACTCAAGTTGCA
70877689 TTAACACTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (34 bp):
AATCACAAACTCTTTTCCCCACTCAAGTTGCACT
Found at i:70887844 original size:15 final size:15
Alignment explanation
Indices: 70887826--70887855 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70887816 TTTCTGAGGA
*
70887826 TCAATCCTAATTCCC
1 TCAATCCTAAGTCCC
70887841 TCAATCCTAAGTCCC
1 TCAATCCTAAGTCCC
70887856 AGAAAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.40, G:0.03, T:0.30
Consensus pattern (15 bp):
TCAATCCTAAGTCCC
Found at i:70902447 original size:37 final size:37
Alignment explanation
Indices: 70902392--70902494 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
70902382 CGAATAGTCC
* *
70902392 CCACTCGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
70902429 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
70902466 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
70902495 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:70902693 original size:48 final size:48
Alignment explanation
Indices: 70902635--70903043 Score: 710
Period size: 48 Copynumber: 8.5 Consensus size: 48
70902625 ATATACACAC
* * *
70902635 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70902683 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70902731 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
70902779 ATCTCATACATATTTCACATTAGCCATACGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70902827 ATCTCATAGATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70902875 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70902923 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
70902971 ATCTCATATATATTTCACACTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70903019 ATCTCATACATATTTCACACTAGCC
1 ATCTCATACATATTTCACACTAGCC
70903044 GAAAGCTTTA
Statistics
Matches: 347, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 347 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:70907397 original size:40 final size:40
Alignment explanation
Indices: 70907346--70907574 Score: 395
Period size: 40 Copynumber: 5.7 Consensus size: 40
70907336 GCTACTTGCT
*
70907346 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
70907386 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
70907426 CAAATACCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
70907466 CAAATACCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
70907506 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
70907546 CAATTGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
70907575 CATCCGAATA
Statistics
Matches: 179, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:70909826 original size:40 final size:39
Alignment explanation
Indices: 70909655--70909864 Score: 325
Period size: 39 Copynumber: 5.3 Consensus size: 39
70909645 GAACTAAGAT
70909655 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
70909694 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
70909733 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
70909772 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
70909812 CCGAAGGCATTTGTGCG-GATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
70909852 CCGAAGGCATTTG
1 CCGAAGGCATTTG
70909865 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 115 0.72
40 45 0.28
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:70909878 original size:40 final size:39
Alignment explanation
Indices: 70909604--70909864 Score: 245
Period size: 39 Copynumber: 6.6 Consensus size: 39
70909594 TGAATGATGT
* * *
70909604 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
** *
70909643 CCGAACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
70909683 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
70909722 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-A
70909761 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* *
70909799 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGGATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTACTATAA
*
70909840 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70909865 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 12, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
39 129 0.64
40 60 0.30
41 11 0.05
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:70914315 original size:39 final size:40
Alignment explanation
Indices: 70914220--70914481 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
70914210 TTGAATGATG
*
70914220 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
70914258 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
70914299 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70914338 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
70914377 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70914416 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
70914455 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70914482 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:70918614 original size:40 final size:40
Alignment explanation
Indices: 70918570--70918797 Score: 332
Period size: 40 Copynumber: 5.7 Consensus size: 40
70918560 CTACTTGCTT
* * *
70918570 AAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGTAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
70918610 AAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* *
70918650 AAATACCTTCGGGACTTAGCCCGGTTATAGTAACTCACAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
70918690 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* * * * *
70918730 AATTGCCTTCGGGACTTAGCCCGG-AATTGGTCACTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCAC
70918770 AAATGCCTTCGGGACTTAGCCCGGTTAT
1 AAATGCCTTCGGGACTTAGCCCGGTTAT
70918798 CATCTGAATA
Statistics
Matches: 169, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 167 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:70921431 original size:46 final size:46
Alignment explanation
Indices: 70921211--70921432 Score: 211
Period size: 46 Copynumber: 4.7 Consensus size: 46
70921201 CACGTATCAA
** * *
70921211 GCCGATGCCATGTCTTAGACATGGTCTTACACTAGCTTTCACAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTTCACAATATG
* * * *
70921259 GCTGATGCATGTCCCAGACATGTCTTACACTAGC--ACACATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCACA-ATAT---G
*
70921307 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTTGTCTCAA-A--
1 GCCGATGCATGTCCCAGACATGTCTTACACTGG--CTT-TCACAATATG
* *
70921353 GCCGATGCATGTCCCAGACATGTCTTATACTGGCTTTCGCAATATG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCACAATATG
* *
70921399 GCGGATGCATGTCCCAGACATGTCTTCCACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
70921433 GCACATATCA
Statistics
Matches: 147, Mismatches: 15, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
43 5 0.03
44 8 0.05
45 3 0.02
46 76 0.52
47 12 0.08
48 38 0.26
50 1 0.01
52 1 0.01
53 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCACAATATG
Found at i:70928644 original size:33 final size:33
Alignment explanation
Indices: 70928599--70928665 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
70928589 AAATCATTGA
*
70928599 AAGAATAGGGCCAGTAGCATATCGGCTAACTTT
1 AAGAATAAGGCCAGTAGCATATCGGCTAACTTT
* *
70928632 AAGAATAAGGCCAGTAGTATATCGGCTAGCTTT
1 AAGAATAAGGCCAGTAGCATATCGGCTAACTTT
70928665 A
1 A
70928666 CTGTCAGAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (33 bp):
AAGAATAAGGCCAGTAGCATATCGGCTAACTTT
Found at i:70930202 original size:48 final size:48
Alignment explanation
Indices: 70930141--70930283 Score: 223
Period size: 48 Copynumber: 3.0 Consensus size: 48
70930131 CATTAGGGAA
* * *
70930141 TACATTGATTTGGCTTCGGGCCATGATATTGACACATCGGGTGCGAGT
1 TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGT
* * * *
70930189 TACATTAACTTGGCTTCGGTCCATGATATCGGCACTTAGGGTGCGAGT
1 TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGT
70930237 TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAG
1 TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAG
70930284 ACTCCCGACT
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (48 bp):
TACATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAGT
Found at i:70933906 original size:30 final size:30
Alignment explanation
Indices: 70933872--70933933 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
70933862 TCCTTAACTC
70933872 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
70933902 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
70933932 AA
1 AA
70933934 GCTCGGGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:70937656 original size:25 final size:25
Alignment explanation
Indices: 70937615--70937684 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
70937605 CTCTTTTAAT
* *
70937615 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
* * *
70937640 AAGTAGGGCAAAACCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
70937665 AACTAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
70937685 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:70938592 original size:27 final size:27
Alignment explanation
Indices: 70938492--70938575 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
70938482 GGGCATATTC
* * *
70938492 GTCATTTTACCATACA-GGGCTACTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
70938519 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
70938546 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
70938573 GTC
1 GTC
70938576 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 48 0.91
28 5 0.09
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:70938667 original size:27 final size:27
Alignment explanation
Indices: 70938615--70938973 Score: 246
Period size: 27 Copynumber: 13.3 Consensus size: 27
70938605 TTCATCCTAC
* * * *
70938615 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
** * *
70938642 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTATAAACT
* * * *
70938669 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTATAAACT
* * *
70938697 CAAGAGTATTTCT-GTAACTTTGTAAA-T
1 -AAGGGTATTT-TGGTAATTTTATAAACT
* *
70938724 CAGGGGTATTTTGGTAATTTTATAAATT
1 -AAGGGTATTTTGGTAATTTTATAAACT
* ** * *
70938752 GAGGGTATTTCAGTAATTTCACAAAC-
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
70938778 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTATAAACT
* *
70938806 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* * *
70938833 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTATAAACT
* * * * *
70938860 AGGGGTATTTTAGCAATTTTACAGACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
70938887 -AGGGTATTTTGGTAATTTTACTGATC-
1 AAGGGTATTTTGGTAATTTTA-TAAACT
*
70938913 GAGGGTATTTTGGTAATTTTATAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
70938940 AAGGGTATTTTAGTAATTTTGTAAA-T
1 AAGGGTATTTTGGTAATTTTATAAACT
70938966 CAAGGGTA
1 -AAGGGTA
70938974 AAATAGTAAT
Statistics
Matches: 266, Mismatches: 55, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
26 24 0.09
27 214 0.80
28 15 0.06
29 13 0.05
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTATAAACT
Found at i:70938821 original size:81 final size:80
Alignment explanation
Indices: 70938725--70938959 Score: 296
Period size: 81 Copynumber: 2.9 Consensus size: 80
70938715 TTTGTAAATC
** *
70938725 AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTTGGTAATTTTACAAACCAG-GGTATTTT
*
70938790 GGTAATTTTACAAACT
65 AGTAATTTTACAAACT
* *
70938806 AGGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 AGGGGTATTTTGGTAATTTTATAAATTGA-GGGTATTTTGGTAATTTTACAAACCA-GGGTATTT
* *
70938870 TAGCAATTTTACAGACT
64 TAGTAATTTTACAAACT
* * * *
70938887 A-GGGTATTTTGGTAATTTTACT-GATCGAGGGTATTTTGGTAATTTTATAAACTAAGGGTATTT
1 AGGGGTATTTTGGTAATTTTA-TAAATTGAGGGTATTTTGGTAATTTTACAAAC-CAGGGTATTT
70938950 TAGTAATTTT
64 TAGTAATTTT
70938960 GTAAATCAAG
Statistics
Matches: 134, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
80 61 0.46
81 72 0.54
82 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTA
GTAATTTTACAAACT
Found at i:70938980 original size:27 final size:27
Alignment explanation
Indices: 70938952--70939189 Score: 323
Period size: 27 Copynumber: 8.8 Consensus size: 27
70938942 GGGTATTTTA
* * *
70938952 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
70938979 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * **
70939006 ATAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
70939033 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
70939060 GTAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
70939087 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
70939114 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
70939141 GTAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
70939168 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
70939190 CTTTGGTAAT
Statistics
Matches: 193, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:70939200 original size:81 final size:81
Alignment explanation
Indices: 70938950--70939189 Score: 372
Period size: 81 Copynumber: 3.0 Consensus size: 81
70938940 AAGGGTATTT
* * ** * * **
70938950 TAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAATAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
70939015 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * *
70939031 CAATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
70939096 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
*
70939112 TGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
70939177 TAAATCGAGGGTA
66 TAAATCGAGGGTA
70939190 CTTTGGTAAT
Statistics
Matches: 144, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 144 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:70942562 original size:37 final size:37
Alignment explanation
Indices: 70942509--70942611 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
70942499 CGAATAGTCC
*
70942509 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
70942546 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
70942583 CCAGACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
70942612 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:70942822 original size:60 final size:55
Alignment explanation
Indices: 70942752--70942887 Score: 151
Period size: 48 Copynumber: 2.5 Consensus size: 55
70942742 ATATACACAC
* *
70942752 ATCTCCTACATATTTCACACTAGCCGAATCACTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACACTAGCC--AT---TAGCCATTCGGCTTTACCACATATACAT
70942812 ATCTCATACATATTT----C-A--CATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTAGCCATTCGGCTTTACCACATATACAT
*
70942860 ATCTCATACATATTTCACATTAGCCATT
1 ATCTCATACATATTTCACACTAGCCATT
70942888 CGGCTTTACC
Statistics
Matches: 66, Mismatches: 3, Indels: 19
0.75 0.03 0.22
Matches are distributed among these distances:
48 42 0.64
51 2 0.03
53 2 0.03
55 5 0.08
56 1 0.02
60 14 0.21
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (55 bp):
ATCTCATACATATTTCACACTAGCCATTAGCCATTCGGCTTTACCACATATACAT
Found at i:70942838 original size:48 final size:48
Alignment explanation
Indices: 70942784--70942900 Score: 225
Period size: 48 Copynumber: 2.4 Consensus size: 48
70942774 GCCGAATCAC
*
70942784 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
70942832 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
70942880 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
70942901 CACATATATA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:70950683 original size:79 final size:81
Alignment explanation
Indices: 70950572--70950756 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
70950562 GCTACTCGTT
* * * *
70950572 CAAATGCCTTCCGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTT-CGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
70950635 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
70950652 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
70950716 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
70950732 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
70950757 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 30 0.33
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:70950756 original size:40 final size:40
Alignment explanation
Indices: 70950553--70950756 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
70950543 CGGAATTTAA
** * *
70950553 CCGGATATAGCT-ACTCGTTCAAATGCCTTCCGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
70950593 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70950633 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70950672 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
70950712 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70950752 CCGGA
1 CCGGA
70950757 CATCATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70958620 original size:79 final size:82
Alignment explanation
Indices: 70958509--70958693 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
70958499 GCTACTCGTT
* * *
70958509 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
70958572 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
70958589 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
70958652 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
70958669 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70958694 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:70958693 original size:40 final size:40
Alignment explanation
Indices: 70958490--70958693 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
70958480 CGGAATTTAA
** *
70958490 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
70958530 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70958570 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70958609 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
70958649 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70958689 CCGGA
1 CCGGA
70958694 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70966491 original size:40 final size:40
Alignment explanation
Indices: 70966454--70966585 Score: 178
Period size: 40 Copynumber: 3.3 Consensus size: 40
70966444 GCTACTCGTT
* *
70966454 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
70966494 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
70966534 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
70966573 CAAATGCCTTCGG
1 CAAATGCCTTCGG
70966586 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
39 35 0.41
40 48 0.56
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:70966571 original size:79 final size:82
Alignment explanation
Indices: 70966454--70966638 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
70966444 GCTACTCGTT
* * *
70966454 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
70966517 GGATTTAGTAAC-TCGCA
65 GAATATAGTAACTTAGCA
* **
70966534 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
70966597 AATATGGTCACTTAGCA
66 AATATAGTAACTTAGCA
70966614 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70966639 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
AATATAGTAACTTAGCA
Found at i:70970007 original size:40 final size:40
Alignment explanation
Indices: 70969907--70970078 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
70969897 GCTCCCCGTT
* * *
70969907 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
70969947 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
70969986 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
70970026 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
70970066 CAAATGCCTTCGG
1 CAAATGCCTTCGG
70970079 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:70970115 original size:80 final size:80
Alignment explanation
Indices: 70969907--70970131 Score: 208
Period size: 80 Copynumber: 2.8 Consensus size: 80
70969897 GCTCCCCGTT
* * * * * * *
70969907 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CACAATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTATCT-AGCACAAAGCCTTCGGGACTTAACCCGG
70969971 -ATTTAATAACTCGCA
65 AATTTAATAACTCGCA
* * * *
70969986 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTATCTAGCACAAA-GCCTTCGGGACTTAACCCGG
* *
70970051 AATTT-GTATCTCGCA
65 AATTTAATAACTCGCA
** * * *
70970066 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCACAAAGCCTTTGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGT-ATC-TAGCACAAAGCCTTCGGGACTTAACCC
70970129 GGA
63 GGA
70970132 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
79 39 0.32
80 68 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTATCTAGCACAAAGCCTTCGGGACTTAACCCGGA
ATTTAATAACTCGCA
Found at i:70976340 original size:40 final size:40
Alignment explanation
Indices: 70976240--70976411 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
70976230 GCTCCCCGTT
* * *
70976240 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
70976280 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
70976319 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
70976359 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
70976399 CAAATGCCTTCGG
1 CAAATGCCTTCGG
70976412 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:70979136 original size:22 final size:24
Alignment explanation
Indices: 70979100--70979147 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
70979090 AATTCTATGC
70979100 TAAATTGATAAAGAT-TAA-TATA
1 TAAATTGATAAAGATATAATTATA
70979122 TAAATT-ATAATAGATATAATTATA
1 TAAATTGATAA-AGATATAATTATA
70979146 TA
1 TA
70979148 TTAAAGATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 3 0.13
24 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAATTGATAAAGATATAATTATA
Found at i:70988067 original size:17 final size:17
Alignment explanation
Indices: 70988047--70988120 Score: 85
Period size: 17 Copynumber: 4.4 Consensus size: 17
70988037 TTATGATGGA
70988047 GTATGAACTATTATTTT
1 GTATGAACTATTATTTT
* **
70988064 GTATGAATTATTATTCA
1 GTATGAACTATTATTTT
* *
70988081 GTATGAACTAATATTTC
1 GTATGAACTATTATTTT
*
70988098 ATATGAACTATTATTTT
1 GTATGAACTATTATTTT
*
70988115 GCATGA
1 GTATGA
70988121 GTTGTCATTT
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 45 1.00
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (17 bp):
GTATGAACTATTATTTT
Found at i:70988084 original size:34 final size:34
Alignment explanation
Indices: 70988046--70988112 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
70988036 GTTATGATGG
* ** *
70988046 AGTATGAACTATTATTTTGTATGAATTATTATTC
1 AGTATGAACTAATATTTCATATGAACTATTATTC
70988080 AGTATGAACTAATATTTCATATGAACTATTATT
1 AGTATGAACTAATATTTCATATGAACTATTATT
70988113 TTGCATGAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.46
Consensus pattern (34 bp):
AGTATGAACTAATATTTCATATGAACTATTATTC
Found at i:70988136 original size:51 final size:51
Alignment explanation
Indices: 70988048--70988156 Score: 128
Period size: 51 Copynumber: 2.1 Consensus size: 51
70988038 TATGATGGAG
* *
70988048 TATGAACTATTATTTTGTATGAATTATTATTCAGTATGAACTAATATTTCA
1 TATGAACTATTATTTTGCATGAATTATCATTCAGTATGAACTAATATTTCA
* * ** * ** *
70988099 TATGAACTATTATTTTGCATGAGTTGTCATTTGGTATGAATTGTTATTTTA
1 TATGAACTATTATTTTGCATGAATTATCATTCAGTATGAACTAATATTTCA
70988150 TATGAAC
1 TATGAAC
70988157 AGATGTTTGA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (51 bp):
TATGAACTATTATTTTGCATGAATTATCATTCAGTATGAACTAATATTTCA
Found at i:70998478 original size:54 final size:55
Alignment explanation
Indices: 70998400--70998537 Score: 170
Period size: 54 Copynumber: 2.5 Consensus size: 55
70998390 CGATATGGCC
* ** *
70998400 GTGGTCGAGCCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGTGGAAGAACA
1 GTGGTCGAACCTGTTAAAACAACACGGGCGTGCGACACGCCCGTGTGGAACAACA
* * * * *
70998455 GTGGT-GAACCTGTTAAAACAACACAGGCGTTCGACACGCCTGTGTGGAACACCT
1 GTGGTCGAACCTGTTAAAACAACACGGGCGTGCGACACGCCCGTGTGGAACAACA
**
70998509 GTGGTCGAACCTGTTAAATTAACACGGGC
1 GTGGTCGAACCTGTTAAAACAACACGGGC
70998538 ATAGGGCTTG
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
54 45 0.64
55 25 0.36
ACGTcount: A:0.28, C:0.26, G:0.29, T:0.17
Consensus pattern (55 bp):
GTGGTCGAACCTGTTAAAACAACACGGGCGTGCGACACGCCCGTGTGGAACAACA
Found at i:71016874 original size:33 final size:33
Alignment explanation
Indices: 71016832--71016903 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
71016822 AATGTGCTAC
71016832 AATAACATAAGAACCCATAAATACTAGATGGCA
1 AATAACATAAGAACCCATAAATACTAGATGGCA
71016865 AATAACATAAGAACCCATAAATACTAGATGGCA
1 AATAACATAAGAACCCATAAATACTAGATGGCA
71016898 AATAAC
1 AATAAC
71016904 CTTTTTGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18
Consensus pattern (33 bp):
AATAACATAAGAACCCATAAATACTAGATGGCA
Found at i:71020233 original size:23 final size:22
Alignment explanation
Indices: 71020207--71020282 Score: 84
Period size: 23 Copynumber: 3.4 Consensus size: 22
71020197 CTGATGGAGA
* *
71020207 GTAAGCTCTATTGACCTGAAATG
1 GTAAGCTCTATCGAGCTGAAA-G
71020230 GTAAGCTCTATCGAGCTGAACA-
1 GTAAGCTCTATCGAGCTGAA-AG
71020252 GTAAGCTC-ATACGAGCTGAAACG
1 GTAAGCTCTAT-CGAGCTGAAA-G
71020275 GTAAGCTC
1 GTAAGCTC
71020283 CAATGAGCTA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
21 3 0.06
22 17 0.36
23 26 0.55
24 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (22 bp):
GTAAGCTCTATCGAGCTGAAAG
Found at i:71020290 original size:23 final size:23
Alignment explanation
Indices: 71020206--71020306 Score: 73
Period size: 23 Copynumber: 4.4 Consensus size: 23
71020196 GCTGATGGAG
* * * *
71020206 AGTAAGCTCTATTGACCTGAAAT
1 AGTAAGCTCCAATGAGCTGAAAC
* *
71020229 GGTAAGCT-CTATCGAGCTG-AAC
1 AGTAAGCTCCAAT-GAGCTGAAAC
*
71020251 AGTAAGCT-CATACGAGCTGAAAC
1 AGTAAGCTCCA-ATGAGCTGAAAC
* *
71020274 GGTAAGCTCCAATGAGCTAAAAAC
1 AGTAAGCTCCAATGAGCT-GAAAC
71020298 AGTAAGCTC
1 AGTAAGCTC
71020307 TTACGAGCTA
Statistics
Matches: 60, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
22 17 0.28
23 29 0.48
24 14 0.23
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.22
Consensus pattern (23 bp):
AGTAAGCTCCAATGAGCTGAAAC
Found at i:71020291 original size:45 final size:46
Alignment explanation
Indices: 71020222--71020315 Score: 120
Period size: 47 Copynumber: 2.0 Consensus size: 46
71020212 CTCTATTGAC
* * *
71020222 CTGAAATGGTAAGCTCTATCGAGCT-GAACAGTAAGCTCATACGAG
1 CTGAAACGGTAAGCTCAATCGAGCTAAAACAGTAAGCTCATACGAG
*
71020267 CTGAAACGGTAAGCTCCAAT-GAGCTAAAAACAGTAAGCTCTTACGAG
1 CTGAAACGGTAAGCT-CAATCGAGCT-AAAACAGTAAGCTCATACGAG
71020314 CT
1 CT
71020316 AATATATATC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
45 19 0.45
46 3 0.07
47 20 0.48
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (46 bp):
CTGAAACGGTAAGCTCAATCGAGCTAAAACAGTAAGCTCATACGAG
Found at i:71020302 original size:24 final size:24
Alignment explanation
Indices: 71020230--71020317 Score: 78
Period size: 23 Copynumber: 3.8 Consensus size: 24
71020220 ACCTGAAATG
* *
71020230 GTAAGCTCTAT-CGAGCT-GAACA
1 GTAAGCTCCATACGAGCTAAAACA
* *
71020252 GTAAGCT-CATACGAGCTGAAACG
1 GTAAGCTCCATACGAGCTAAAACA
*
71020275 GTAAGCTCCA-ATGAGCTAAAAACA
1 GTAAGCTCCATACGAGCT-AAAACA
*
71020299 GTAAGCT-CTTACGAGCTAA
1 GTAAGCTCCATACGAGCTAA
71020318 TATATATCGG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
21 2 0.04
22 13 0.25
23 19 0.36
24 19 0.36
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (24 bp):
GTAAGCTCCATACGAGCTAAAACA
Found at i:71025604 original size:12 final size:12
Alignment explanation
Indices: 71025587--71025611 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71025577 TGACTCCATT
71025587 TCTCCATTTTCA
1 TCTCCATTTTCA
71025599 TCTCCATTTTCA
1 TCTCCATTTTCA
71025611 T
1 T
71025612 TTTGGAGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (12 bp):
TCTCCATTTTCA
Found at i:71025607 original size:63 final size:62
Alignment explanation
Indices: 71025540--71025660 Score: 181
Period size: 63 Copynumber: 1.9 Consensus size: 62
71025530 TTTTTCAGGT
* *
71025540 CATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGA-CTCCATTTCTCCATTTTCATCTC
1 CATTTTCATTTTGGAGAAAACCACAATCATTTCCAAAT-ATCCCCATTT-TCCATTTTCATCTC
* *
71025603 CATTTTCATTTTGGAGATAACCATAATCATTTCCAAATATCCCCATTTTCCATTTTCA
1 CATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATATCCCCATTTTCCATTTTCA
71025661 CCATTTCTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
62 11 0.21
63 42 0.79
ACGTcount: A:0.28, C:0.26, G:0.06, T:0.40
Consensus pattern (62 bp):
CATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATATCCCCATTTTCCATTTTCATCTC
Found at i:71061676 original size:40 final size:40
Alignment explanation
Indices: 71061602--71061823 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
71061592 AACCCAAGTA
* * *
71061602 CCTTCGAGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
71061641 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
71061681 CCTTCGGGACTTGGCCCGGATATAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
71061721 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
71061761 ACTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
71061801 CCTTTGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
71061824 CATTCGAATA
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 11 0.07
40 153 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:71069679 original size:22 final size:22
Alignment explanation
Indices: 71069654--71069697 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
71069644 ATAAAATTTA
71069654 AAAAAAAAAAAAGAATCAATTC
1 AAAAAAAAAAAAGAATCAATTC
* * *
71069676 AAAAATAATAAGGAATCAATTC
1 AAAAAAAAAAAAGAATCAATTC
71069698 GTTCTCAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.66, C:0.09, G:0.07, T:0.18
Consensus pattern (22 bp):
AAAAAAAAAAAAGAATCAATTC
Found at i:71070245 original size:13 final size:13
Alignment explanation
Indices: 71070226--71070255 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
71070216 TTTTCTAACA
71070226 ATATTTTTTAT-T
1 ATATTTTTTATAT
71070238 ATATTTTTTATAT
1 ATATTTTTTATAT
71070251 ATATT
1 ATATT
71070256 CAGACATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
ATATTTTTTATAT
Found at i:71077125 original size:30 final size:30
Alignment explanation
Indices: 71077078--71077134 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
71077068 GCATAATATT
*
71077078 TCTTTTTGAAAAGTTGAT-ATTCAAATTGAC
1 TCTTTTTGAAAAATTGATGA-TCAAATTGAC
71077108 TCTTTTT-AAAATATTGATGATCAAATT
1 TCTTTTTGAAAA-ATTGATGATCAAATT
71077135 TAACTAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 4 0.17
30 19 0.79
31 1 0.04
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.46
Consensus pattern (30 bp):
TCTTTTTGAAAAATTGATGATCAAATTGAC
Found at i:71078923 original size:5 final size:5
Alignment explanation
Indices: 71078913--71078941 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
71078903 ACTTTGTGTG
71078913 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
71078942 AACACAGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:71083389 original size:6 final size:6
Alignment explanation
Indices: 71083368--71083399 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
71083358 CCAATTTGTG
71083368 AAAAT- AAAAT- AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
71083400 ACACAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 10 0.38
6 16 0.62
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:71083731 original size:23 final size:23
Alignment explanation
Indices: 71083701--71083747 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
71083691 CGGGTCACTT
71083701 AATTCTAACACTTTGTCTTTGGC
1 AATTCTAACACTTTGTCTTTGGC
71083724 AATTCTAACACTTTGTCTTTGGC
1 AATTCTAACACTTTGTCTTTGGC
71083747 A
1 A
71083748 TTTAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (23 bp):
AATTCTAACACTTTGTCTTTGGC
Found at i:71084541 original size:20 final size:18
Alignment explanation
Indices: 71084516--71084565 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
71084506 TTTACCAATT
*
71084516 TTTTTATTTTCTTAAATTTA
1 TTTTTATTTTC--AAATCTA
71084536 TTTTTACATTTTCAAATCTA
1 TTTTT--ATTTTCAAATCTA
71084556 TTTTTATTTT
1 TTTTTATTTT
71084566 ATTTTATTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 5 0.19
20 16 0.59
22 6 0.22
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTATTTTCAAATCTA
Found at i:71084593 original size:30 final size:30
Alignment explanation
Indices: 71084520--71084598 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 30
71084510 CCAATTTTTT
*
71084520 TATTTTCTTAAATTTA-TTTTTACATTTTCA
1 TATTTTCTT-ATTTTATTTTTTACATTTTCA
* *
71084550 AATCTATTTTTATTTTATTTTATTACA-TTTCA
1 TAT-T-TTCTTATTTTATTTT-TTACATTTTCA
71084582 TATTTTCTTATTTTATT
1 TATTTTCTTATTTTATT
71084599 ATCTTAATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
30 14 0.35
31 7 0.17
32 14 0.35
33 5 0.12
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (30 bp):
TATTTTCTTATTTTATTTTTTACATTTTCA
Found at i:71088392 original size:15 final size:15
Alignment explanation
Indices: 71088367--71088424 Score: 98
Period size: 15 Copynumber: 3.8 Consensus size: 15
71088357 TCATATATAT
71088367 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
71088383 TATAAATTCAATCAA
1 TATAAATTCAATCAA
*
71088398 AATAAATTCAATCAA
1 TATAAATTCAATCAA
71088413 TATAAATTCAAT
1 TATAAATTCAAT
71088425 AAATTCATCG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
15 36 0.90
16 4 0.10
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:71089383 original size:31 final size:32
Alignment explanation
Indices: 71089325--71089388 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
71089315 CATACATTTG
*
71089325 TCATAATTTAATATATTTATTACATAAAAATC
1 TCATAATATAATATATTTATTACATAAAAATC
*
71089357 TCATAATATAAT-TATTTAATTA-ATAAATATC
1 TCATAATATAATATATTT-ATTACATAAAAATC
71089388 T
1 T
71089389 TATTTAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 14 0.48
32 15 0.52
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (32 bp):
TCATAATATAATATATTTATTACATAAAAATC
Found at i:71090173 original size:27 final size:27
Alignment explanation
Indices: 71090107--71090345 Score: 127
Period size: 27 Copynumber: 8.9 Consensus size: 27
71090097 CATCCTGGCT
* * * **
71090107 GACTACCCCGTATTTACTGTCCCAGTG
1 GACTAACCCGTGTTTACTATCCCAACG
* *
71090134 GACTACCCCGTGTTTACTATCCCAATG
1 GACTAACCCGTGTTTACTATCCCAACG
* * * * *
71090161 GACTAACCTGTGTTTAATGTCTCAACA
1 GACTAACCCGTGTTTACTATCCCAACG
* ** * * * *
71090188 GTCTAATTCGTGTTTACTGTCCTAGCA
1 GACTAACCCGTGTTTACTATCCCAACG
* ** * * ** *
71090215 GAGTAACCTATGTTTAATGTCCTGATG
1 GACTAACCCGTGTTTACTATCCCAACG
**
71090242 GACTAACCCGTGTTTACTATCCCAGTG
1 GACTAACCCGTGTTTACTATCCCAACG
* * * *
71090269 AACTAACCCGAGTTTACTATCTCGACG
1 GACTAACCCGTGTTTACTATCCCAACG
* * * * *
71090296 GGCTAATCCATGTTTAATATCCCGACG
1 GACTAACCCGTGTTTACTATCCCAACG
*
71090323 GACTAACCCATGTTTACTATCCC
1 GACTAACCCGTGTTTACTATCCC
71090346 GGTAGACTAT
Statistics
Matches: 159, Mismatches: 53, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (27 bp):
GACTAACCCGTGTTTACTATCCCAACG
Found at i:71092154 original size:25 final size:26
Alignment explanation
Indices: 71092126--71092183 Score: 91
Period size: 25 Copynumber: 2.3 Consensus size: 26
71092116 AGGTTTCACG
* *
71092126 TTATATGGCTCACATGAGCTTCCC-A
1 TTATATGGCTCAAAAGAGCTTCCCGA
71092151 TTATATGGCTCAAAAGAGCTTCCCGA
1 TTATATGGCTCAAAAGAGCTTCCCGA
71092177 TTATATG
1 TTATATG
71092184 CTTGTATGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 22 0.73
26 8 0.27
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (26 bp):
TTATATGGCTCAAAAGAGCTTCCCGA
Found at i:71102206 original size:29 final size:28
Alignment explanation
Indices: 71102170--71102247 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
71102160 TCATGAGATT
71102170 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
71102200 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
71102227 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
71102248 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:71102465 original size:174 final size:174
Alignment explanation
Indices: 71102200--71102701 Score: 923
Period size: 174 Copynumber: 2.9 Consensus size: 174
71102190 AAATTGTACA
* *
71102200 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
71102265 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAAGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
71102330 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
71102374 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
71102439 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
71102504 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
71102548 GCACTAAGTGTGTGAGTTTAGAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
71102613 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
71102678 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
71102702 ACCTTGAGTT
Statistics
Matches: 317, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 317 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:71106217 original size:16 final size:15
Alignment explanation
Indices: 71106191--71106225 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
71106181 TGATGTGAAT
71106191 AATATAAAATATTAA
1 AATATAAAATATTAA
*
71106206 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
71106222 AATA
1 AATA
71106226 ATACTGTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:71110339 original size:22 final size:22
Alignment explanation
Indices: 71110311--71110353 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
71110301 GTTATGTCCT
71110311 TAGATATAATAGAATTCTTTTG
1 TAGATATAATAGAATTCTTTTG
71110333 TAGATATAATAGAATTCTTTT
1 TAGATATAATAGAATTCTTTT
71110354 CTAAAAGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.47
Consensus pattern (22 bp):
TAGATATAATAGAATTCTTTTG
Found at i:71114432 original size:39 final size:40
Alignment explanation
Indices: 71114337--71114598 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
71114327 TTGAATGCTG
*
71114337 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
71114375 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
71114416 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
71114455 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
71114494 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
71114533 TCCGGGTTAAGTCCCGAAGGCATTTGTACGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
71114572 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
71114599 AACGAGGAGC
Statistics
Matches: 202, Mismatches: 12, Indels: 17
0.87 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 58 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:71122457 original size:39 final size:40
Alignment explanation
Indices: 71122362--71122584 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
71122352 TTGAATGCTG
*
71122362 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
71122400 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
71122441 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
71122480 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
71122519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
71122558 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
71122585 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:71122548 original size:79 final size:81
Alignment explanation
Indices: 71122362--71122584 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
71122352 TTGAATGCTG
* * *
71122362 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
71122424 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
71122441 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
71122502 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
71122519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
71122583 TG
66 TG
71122585 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:71122606 original size:79 final size:79
Alignment explanation
Indices: 71122362--71122617 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
71122352 TTGAATGCTG
* * * *
71122362 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
71122423 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
71122441 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
71122505 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
71122519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
71122582 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
71122599 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
71122618 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:71126243 original size:13 final size:13
Alignment explanation
Indices: 71126199--71126243 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
71126189 CGCTGAGGTA
71126199 TTTTTAATTTCTG
1 TTTTTAATTTCTG
*
71126212 TTTTTCAATTTCTA
1 TTTTT-AATTTCTG
*
71126226 CTTTTAATTTCTG
1 TTTTTAATTTCTG
71126239 TTTTT
1 TTTTT
71126244 CAAAAATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.16, C:0.11, G:0.04, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:71126308 original size:100 final size:98
Alignment explanation
Indices: 71126126--71126507 Score: 412
Period size: 100 Copynumber: 3.9 Consensus size: 98
71126116 AATTTCCGTT
* * * *
71126126 TTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACG
1 TTTT-AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACG
*
71126191 CTGAGGTATTTTTAATTTCTGTTTTTCAATTTCTAC
65 CTGAGGTATTTTCAATTTCTGTTTTTCAATTT-T-C
* * * *
71126227 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTCAGGGCACGC
1 TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGC
71126292 TGAGGTATTTTCAATTTCTGTTTTTCAATTTTTGCC
66 TGAGGTATTTTCAATTTCTGTTTTTCAA-TTTT--C
** * * *
71126328 TTAAAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGC
*
71126391 TGAGGTATTTTCAA-------TTTTC--GTTT-
66 TGAGGTATTTTCAATTTCTGTTTTTCAATTTTC
* *
71126414 TTTTAATTTATG-TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAGGACAC
1 TTTTAATTTATGCTTT-T-CAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACAC
* * * *
71126478 ACTGAGGTAATTTCAATTTTTGTTTGTCAA
64 GCTGAGGTATTTTCAATTTCTGTTTTTCAA
71126508 AACTCAACTC
Statistics
Matches: 240, Mismatches: 26, Indels: 33
0.80 0.09 0.11
Matches are distributed among these distances:
85 3 0.01
86 9 0.04
89 58 0.24
92 5 0.02
96 4 0.02
99 56 0.23
100 83 0.35
101 22 0.09
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (98 bp):
TTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGC
TGAGGTATTTTCAATTTCTGTTTTTCAATTTTC
Found at i:71126534 original size:73 final size:73
Alignment explanation
Indices: 71126433--71126993 Score: 650
Period size: 73 Copynumber: 7.6 Consensus size: 73
71126423 ATGTTTCTAA
* * ** *
71126433 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAGGACACACTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
71126498 TGTTTGTC
66 TGTTTGTC
* * * *
71126506 AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
*
71126571 TGTTTTTC
66 TGTTTGTC
* * * * * * *
71126579 AAAAAAATCAACTCATATTACGATAGGTGAGTTGAGCTTCAGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATT
71126644 TTTGTTTGTC
64 TTTGTTTGTC
* * *
71126654 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGGGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
*
71126719 TGTCTT-TAAA
66 TGT-TTGT--C
* * *
71126729 AAAAATCAGCTCATATTGCGAGAGGAGAGTTGAA-CCCCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTCAAGACACGTTGAGGTATTTTCAATTT
*
71126793 TTGTTTTTC
65 TTGTTTGTC
* * *
71126802 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAA-CCTCAAG--ACGCTGAGGTAATTTCAAT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTCAAGACACGTTGAGGTATTTTCAAT
71126864 TTTTGTTTGTC
63 TTTTGTTTGTC
* * * *
71126875 AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGTTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
71126940 TGTCTT-TC
66 TGT-TTGTC
*
71126948 AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAA-CCTCAAGAC
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTCAAGAC
71126994 GCTGAGGTGT
Statistics
Matches: 418, Mismatches: 53, Indels: 31
0.83 0.11 0.06
Matches are distributed among these distances:
70 1 0.00
71 36 0.09
73 174 0.42
74 6 0.01
75 161 0.39
76 39 0.09
77 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
TGTTTGTC
Found at i:71126610 original size:148 final size:147
Alignment explanation
Indices: 71126413--71127023 Score: 732
Period size: 148 Copynumber: 4.1 Consensus size: 147
71126403 AATTTTCGTT
* * * * *
71126413 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACA
* * * *
71126477 CACTGAGGTAATTTCAATTTTTGTTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
*
71126541 CTCAAGACACGTTGAGGTA
131 CTCAAG--ACGCTGAGGTA
* * * * *
71126560 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGATAGGTGAGTTGAGCTTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACA
*
71126625 CGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
* *
71126689 CTCAAGACACGTTGGGGTA
131 CTCAAG--ACGCTGAGGTA
* * * * *
71126708 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGAGAGTTGAA-CCCCAAGAC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTCAAGAC
* * * *
71126772 ACGTTGAGGTATTTTCAATTTTTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGA
65 ACGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
71126837 ACCTCAAGACGCTGAGGTA
129 ACCTCAAGACGCTGAGGTA
* * * * *
71126856 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACA
* * * * *
71126919 CGTTGAGTTATTTTCAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTG
66 CGCTGAGGTAATTTCAATTTTTGT-TTGTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
71126983 AACCTCAAGACGCTGAGGTG
128 AACCTCAAGACGCTGAGGTA
* *
71127003 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
71127024 TTTTTGTGTT
Statistics
Matches: 406, Mismatches: 49, Indels: 16
0.86 0.10 0.03
Matches are distributed among these distances:
145 1 0.00
146 61 0.15
147 82 0.20
148 222 0.55
149 1 0.00
150 39 0.10
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (147 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACA
CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
CTCAAGACGCTGAGGTA
Found at i:71126864 original size:221 final size:222
Alignment explanation
Indices: 71126433--71127023 Score: 879
Period size: 221 Copynumber: 2.7 Consensus size: 222
71126423 ATGTTTCTAA
* * * ** * *
71126433 AAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTCAGGACACACTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* * * * *
71126498 TGT-TTGT--CAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 TGTCTT-TAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
* *
71126560 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGATAGGTGAGTTGAGCTTCAGGACA
130 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGATAGGTGAGTTGAACCTCA-GACA
71126625 CGCTGAGGTAATTTCAATTTTTGTTTGTC
194 CGCTGAGGTAATTTCAATTTTTGTTTGTC
*
71126654 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGGGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* *
71126719 TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGAGAGTTGAACCCCAAGACACGTTGAGGTAT
66 TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
* * *
71126784 TTTCAATTTTTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-AGACG
131 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGATAGGTGAGTTGAACCTCAGACACG
71126848 CTGAGGTAATTTCAATTTTTGTTTGTC
196 CTGAGGTAATTTCAATTTTTGTTTGTC
* *
71126875 AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGTTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* *
71126940 TGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTG
66 TGTCTTT-AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
* *
71127003 TTTTCCATTTCTGTTCTTCAA
130 TTTTCAATTTCTGTTTTTCAA
71127024 TTTTTGTGTT
Statistics
Matches: 336, Mismatches: 30, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
220 27 0.08
221 161 0.48
222 44 0.13
223 104 0.31
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (222 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGATAGGTGAGTTGAACCTCAGACACG
CTGAGGTAATTTCAATTTTTGTTTGTC
Found at i:71127130 original size:15 final size:14
Alignment explanation
Indices: 71127094--71127126 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
71127084 CGCTGAGGTG
71127094 TTTTCAAATTTTGT
1 TTTTCAAATTTTGT
71127108 TTTTCAAATTTTGT
1 TTTTCAAATTTTGT
71127122 TTTTC
1 TTTTC
71127127 CAAAAAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.67
Consensus pattern (14 bp):
TTTTCAAATTTTGT
Found at i:71127132 original size:91 final size:90
Alignment explanation
Indices: 71126992--71127469 Score: 463
Period size: 91 Copynumber: 5.3 Consensus size: 90
71126982 GAACCTCAAG
* * * * * *
71126992 ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTTTGTGTTTCAAAAAAATCAGCTCATATTGC
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTCAAATTTTGTTTTTCAAAAAAATCAACTCATATTGC
* *
71127057 AAGTGGTGAGTTGAGCCTTGACTCAC
66 GAGAGGTGAGTTGAGCCTTGA-TCAC
* *
71127083 ACGCTGAGGTGTTTTCAAATTT-TGTTTTTCAAATTTTGTTTTTCCAAAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTC-AATTTCTGTTTTTCAAATTTTGTTTTTCAAAAAAATCAACTCATATTG
* * **
71127147 CGAGAGGTGAGTTCAGCC-TCAGGAC
65 CGAGAGGTGAGTTGAGCCTTGATCAC
* * *
71127172 ACGCTGAGATATTTTCAATTTCTTTTTTTC-AATTTATGTTTGTCAAAAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTCAAATTT-TGTTTTTCAAAAAAATCAACTCATATTG
*
71127236 CGAGAGGTGAGTTGAGCCTCAGATCAC
65 CGAGAGGTGAGTTGAGCCT-TGATCAC
* * * * *
71127263 ACGCCGAGGTATTTTCAATTGATTTTTTTTTC-AATTTATGCTTTGC--AAAAATCAACTCATAT
1 ACGCTGAGGTATTTTCAATT--TCTGTTTTTCAAATTT-TGTTTTTCAAAAAAATCAACTCATAT
* * *
71127325 TACGAGAGGTGAGTTGAGCCTCGGGTCAC
63 TGCGAGAGGTGAGTTGAGCCT-TGATCAC
** * ** * *
71127354 ATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTG-TTTT---AAAAATCAACTCATATTGT
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTCAAATTTTGTTTTTCAAAAAAATCAACTCATATTGC
* *
71127415 GAGAAGTGAGTTGAGCCTTGGCTCAC
66 GAGAGGTGAGTTGAGCCTT-GATCAC
** *
71127441 GTGCTGAGCTATTTTCAATTTCTGTTTTT
1 ACGCTGAGGTATTTTCAATTTCTGTTTTT
71127470 AATGTCTAGT
Statistics
Matches: 327, Mismatches: 51, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
87 61 0.19
88 13 0.04
89 75 0.23
90 7 0.02
91 147 0.45
92 4 0.01
93 20 0.06
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (90 bp):
ACGCTGAGGTATTTTCAATTTCTGTTTTTCAAATTTTGTTTTTCAAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGATCAC
Done.