Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 219 of 316
Found at i:71673891 original size:44 final size:42
Alignment explanation
Indices: 71673746--71673903 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
71673736 AACATATACA
* * *** *
71673746 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACAAAAACAAAC-TCG
* * * *
71673789 ATGCCACTGTCCCAGACAGGGTCTTACACAAAATCAAACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACAAAAACAAACTCG
** *
71673831 ATGCTGATGTCCCAGACATGGTCTTACACATAAAACAGAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACA-AAAACA-AACTCG
* *
71673875 ATACCAATGTCCCAGACGTGGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
71673904 GAAATCCTAT
Statistics
Matches: 94, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 28 0.30
43 37 0.39
44 29 0.31
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACAAAAACAAACTCG
Found at i:71684502 original size:23 final size:23
Alignment explanation
Indices: 71684472--71684516 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
71684462 AAAATTTTTA
71684472 TGAAAATTATTATTATT-GATATT
1 TGAAAATT-TTATTATTAGATATT
71684495 TGAAAATTTTATTATTAGATAT
1 TGAAAATTTTATTATTAGATAT
71684517 GTTTATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (23 bp):
TGAAAATTTTATTATTAGATATT
Found at i:71688090 original size:27 final size:27
Alignment explanation
Indices: 71688024--71688104 Score: 80
Period size: 26 Copynumber: 3.0 Consensus size: 27
71688014 GGTTAACACT
* *
71688024 TAGAAATA-ACTATATGAAATGGTTATG
1 TAGAAATAGACTATAAG-AATGGTTATA
*
71688051 T-GAAAT-GATTATAAGAATTGGTTATA
1 TAGAAATAGACTATAAGAA-TGGTTATA
71688077 TAGAAATAGA-TATATAGAATGGTTATA
1 TAGAAATAGACTATA-AGAATGGTTATA
71688104 T
1 T
71688105 GAATCTGTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
25 2 0.04
26 19 0.41
27 19 0.41
28 6 0.13
ACGTcount: A:0.44, C:0.01, G:0.19, T:0.36
Consensus pattern (27 bp):
TAGAAATAGACTATAAGAATGGTTATA
Found at i:71688171 original size:14 final size:13
Alignment explanation
Indices: 71688132--71688188 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 13
71688122 TTAGATAAAC
71688132 GAAATAATTATAT
1 GAAATAATTATAT
*
71688145 G-AATAGGTTATAT
1 GAAATA-ATTATAT
71688158 AGAAATAATTATAT
1 -GAAATAATTATAT
* *
71688172 GAAGT-GTTATAT
1 GAAATAATTATAT
71688184 GAAAT
1 GAAAT
71688189 CTTTATATGG
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
12 14 0.39
13 11 0.31
14 7 0.19
15 4 0.11
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (13 bp):
GAAATAATTATAT
Found at i:71688190 original size:80 final size:79
Alignment explanation
Indices: 71688052--71688200 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 79
71688042 ATGGTTATGT
* *
71688052 GAAATGATTATAAGAATTGGTTATATAGAAATAGATATATAGAATGGTTATATGAATCTGTTATA
1 GAAATAATTATAAGAATAGGTTATATAGAAATAGATATATAGAATGGTTATATGAATCT-TTATA
71688117 TGGATTTAGATAAAC
65 TGGATTTAGATAAAC
*
71688132 GAAATAATTATATGAATAGGTTATATAGAAATA-AT-TATATGAA-GTGTTATATGAAATCTTTA
1 GAAATAATTATAAGAATAGGTTATATAGAAATAGATATATA-GAATG-GTTATATG-AATCTTTA
71688194 TATGGAT
63 TATGGAT
71688201 AGATATGTAA
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
78 5 0.08
79 23 0.37
80 35 0.56
ACGTcount: A:0.43, C:0.02, G:0.17, T:0.38
Consensus pattern (79 bp):
GAAATAATTATAAGAATAGGTTATATAGAAATAGATATATAGAATGGTTATATGAATCTTTATAT
GGATTTAGATAAAC
Found at i:71698551 original size:13 final size:13
Alignment explanation
Indices: 71698533--71698557 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71698523 GAATTGATGT
71698533 GTGTGAAAATTTC
1 GTGTGAAAATTTC
71698546 GTGTGAAAATTT
1 GTGTGAAAATTT
71698558 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:71699691 original size:44 final size:44
Alignment explanation
Indices: 71699637--71699806 Score: 213
Period size: 44 Copynumber: 3.9 Consensus size: 44
71699627 ATAGGATTTT
71699637 GATATGTGATTTACGTGTAAGACCATGTCTGGGACGTTGGCATC
1 GATATGTGATTTACGTGTAAGACCATGTCTGGGACGTTGGCATC
* *
71699681 GATTTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGATTTACGTGTAAGACCATGTCTGGGACGTTGGCATC
* * * * *
71699725 -ATATATGAGTT-CGTATAAGACCCTGTCTAGGACAG-TGGCATC
1 GATATGTGATTTACGTGTAAGACCATGTCTGGGAC-GTTGGCATC
* * *
71699767 GATATGTGA-TTACATGTAAGACCAAGTCTGGGATGTTGGC
1 GATATGTGATTTACGTGTAAGACCATGTCTGGGACGTTGGC
71699807 GTTGTACGAG
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
42 29 0.27
43 35 0.33
44 42 0.40
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (44 bp):
GATATGTGATTTACGTGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:71702739 original size:55 final size:54
Alignment explanation
Indices: 71702610--71702815 Score: 234
Period size: 53 Copynumber: 3.8 Consensus size: 54
71702600 ATTAGGGTTT
* * * *
71702610 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTATTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTACTATAAGGC
* * * * *
71702664 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGT-AAGTACTATAAGGC
* * * * * *
71702719 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTACTATAAGGC
* * *
71702772 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGT
71702816 TTAAAAAGGA
Statistics
Matches: 125, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 45 0.36
54 37 0.30
55 43 0.34
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.19
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTACTATAAGGC
Found at i:71705743 original size:21 final size:21
Alignment explanation
Indices: 71705717--71705757 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
71705707 ATCGTAAAAT
71705717 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
71705738 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
71705758 CCATTTTGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.29, G:0.39, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:71709041 original size:24 final size:24
Alignment explanation
Indices: 71709009--71709058 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
71708999 TCACTTTAAC
71709009 TTTCTCTTCAATCTTCTTAACTAA
1 TTTCTCTTCAATCTTCTTAACTAA
* *
71709033 TTTCTCTTCAGTCTTTTTAACTAA
1 TTTCTCTTCAATCTTCTTAACTAA
71709057 TT
1 TT
71709059 CAACCCCGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTCTCTTCAATCTTCTTAACTAA
Found at i:71716939 original size:54 final size:54
Alignment explanation
Indices: 71716806--71716941 Score: 136
Period size: 54 Copynumber: 2.5 Consensus size: 54
71716796 AGACATGTGC
* *
71716806 TAGGCTTTGTG-CTAGACCGTGTAACTCTCTGACCTGGGTCATACGGGTGTTTGT
1 TAGGCTTTGTGCCT-GACCGTGTAACTCTCTGACCTGGGCCACACGGGTGTTTGT
** * * *
71716860 TAGGCCGTGTTCCAGACCGTTTAACTCTCTGA-CTGGAGCCACACGGGCATG-TT-T
1 TAGGCTTTGTGCCTGACCGTGTAACTCTCTGACCTGG-GCCACACGGG--TGTTTGT
*
71716914 TAGGCTTTGTGCCTGACCATGTAACTCT
1 TAGGCTTTGTGCCTGACCGTGTAACTCT
71716942 TTAACTTGAG
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
53 4 0.06
54 56 0.86
55 3 0.05
56 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.26, T:0.32
Consensus pattern (54 bp):
TAGGCTTTGTGCCTGACCGTGTAACTCTCTGACCTGGGCCACACGGGTGTTTGT
Found at i:71739875 original size:4 final size:4
Alignment explanation
Indices: 71739866--71739903 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
71739856 ATTATGGGAT
* *
71739866 ATGA ATGA ATGA ATGA ATGA ATGC AT-A ATCA ATGA ATG
1 ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATG
71739904 TAATCATGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
3 2 0.07
4 28 0.93
ACGTcount: A:0.47, C:0.05, G:0.21, T:0.26
Consensus pattern (4 bp):
ATGA
Found at i:71743497 original size:18 final size:19
Alignment explanation
Indices: 71743474--71743514 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
71743464 AGAGATATAC
*
71743474 TATACAT-AATATTAAATA
1 TATACATAAATAGTAAATA
*
71743492 TATACATAAATAGTCAATA
1 TATACATAAATAGTAAATA
71743511 TATA
1 TATA
71743515 TATACTACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (19 bp):
TATACATAAATAGTAAATA
Found at i:71744483 original size:21 final size:23
Alignment explanation
Indices: 71744457--71744501 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
71744447 TAAAACATAT
*
71744457 ACAT-AATA-ATTAATATTAAAA
1 ACATAAATATATTAATATGAAAA
71744478 ACATAAATATATTAATATGAAAA
1 ACATAAATATATTAATATGAAAA
71744501 A
1 A
71744502 AGCATGTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 4 0.19
23 13 0.62
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (23 bp):
ACATAAATATATTAATATGAAAA
Found at i:71744493 original size:27 final size:26
Alignment explanation
Indices: 71744441--71744493 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
71744431 AGATAGCTAA
*
71744441 TAATATTAAAACATATACATAATAAT
1 TAATATTAAAACATAAACATAATAAT
* *
71744467 TAATATTAAAAACATAAATATATTAAT
1 TAATATT-AAAACATAAACATAATAAT
71744494 ATGAAAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (26 bp):
TAATATTAAAACATAAACATAATAAT
Found at i:71746726 original size:47 final size:48
Alignment explanation
Indices: 71746656--71746787 Score: 196
Period size: 47 Copynumber: 2.8 Consensus size: 48
71746646 CACAATCGAT
*
71746656 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACAT-ATC-CAG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAAC-TCATCTCAG
* * *
71746703 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCAG
*
71746751 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
71746788 TCATTCGCAC
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.01
47 39 0.51
48 37 0.48
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.21
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCAG
Found at i:71750594 original size:40 final size:40
Alignment explanation
Indices: 71750539--71750741 Score: 209
Period size: 40 Copynumber: 5.1 Consensus size: 40
71750529 CGGAATTTAA
* * ** *
71750539 CCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71750579 CCGGTTATAGTAACTCGCACAAATACCTTCGGGACTTAAC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
71750619 CCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71750658 CCGG-AATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
** * *
71750698 CCGAATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
71750738 CCGG
1 CCGG
71750742 ACATCATTCG
Statistics
Matches: 136, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 89 0.65
41 14 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71750669 original size:79 final size:80
Alignment explanation
Indices: 71750523--71750742 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 80
71750513 CCGAATCACG
* * * ** * * *
71750523 TACCTTCGGAATTTAACCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTAT
1 TACCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATAT
71750587 AGTAACTCGCACAAA
66 AGTAACTCGCACAAA
*
71750602 TACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-
1 TACCTTCGGGACTTAA-CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATA
71750665 TAGTAACTCGCACAAA
65 TAGTAACTCGCACAAA
* * * * * *
71750681 TGCCTTC-GGATCTTAGTCCGAATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 TACCTTCGGGA-CTTA-ACCGGATATAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCCGGA
71750743 CATCATTCGA
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 72 0.61
80 44 0.37
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TACCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATAT
AGTAACTCGCACAAA
Found at i:71753788 original size:40 final size:40
Alignment explanation
Indices: 71753743--71753934 Score: 213
Period size: 40 Copynumber: 4.8 Consensus size: 40
71753733 TATAACCACA
** *
71753743 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * *
71753783 CGCACAAATGCCTTCGGATCTTAGTCCAGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
71753823 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
71753863 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * *
71753903 AGCACAATTGCATTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
71753935 TCATTCAAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:71753876 original size:80 final size:80
Alignment explanation
Indices: 71753743--71753935 Score: 296
Period size: 80 Copynumber: 2.4 Consensus size: 80
71753733 TATAACCACA
* * * *
71753743 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGC
71753808 CCAGATAAAATCACT
66 CCAGATAAAATCACT
* * *
71753823 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGC
*
71753888 CCGGATAAAATCACT
66 CCAGATAAAATCACT
* *
71753903 AGCACAATTGCATTCGGGACTTAGCCCGGATAT
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
71753936 CATTCAAATG
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 101 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
AGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGC
CCAGATAAAATCACT
Found at i:71758821 original size:47 final size:47
Alignment explanation
Indices: 71758758--71759536 Score: 1098
Period size: 47 Copynumber: 16.6 Consensus size: 47
71758748 CCCTTCGGGA
* * * *
71758758 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
71758805 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
71758852 CTTATC-C----ATACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
71758894 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
71758941 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
71758988 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
71759035 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
71759082 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
71759131 CTTATCACATATATACACTTTCACATTCATCA-ATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
71759177 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
71759224 CTTATCACATATATATACACTTTCACATTCATCACA-TCGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
71759272 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
71759319 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
71759366 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
71759415 CTTATCACATATATACACTTTCACATTCATCACA-TCGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
71759461 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
71759510 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
71759537 TATTCAAATA
Statistics
Matches: 685, Mismatches: 29, Indels: 36
0.91 0.04 0.05
Matches are distributed among these distances:
41 1 0.00
42 39 0.06
43 1 0.00
46 88 0.13
47 378 0.55
48 44 0.06
49 133 0.19
50 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:71759238 original size:142 final size:141
Alignment explanation
Indices: 71758758--71759536 Score: 1107
Period size: 142 Copynumber: 5.5 Consensus size: 141
71758748 CCCTTCGGGA
* * * *
71758758 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
*
71758823 TTTCACATTCATCACATTGGCCATTCGGCCTTATC-C----ATACA-TGTTCACATTCATCACAT
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACAT
* *
71758882 TGGCCATTCGGC
130 CGGCCATTAGGC
* * * * *
71758894 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
* * *
71758958 -TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCAC
65 CT-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCAC
* *
71759021 ATTGGCCATTCGGC
128 ATCGGCCATTAGGC
* * *
71759035 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATA
71759099 CACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA-
63 CACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
71759163 ATCGGCTATTAGGC
128 ATCGGCCATTAGGC
*
71759177 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATAC
*
71759242 ACTTTCACATTCATCACA-TCGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
71759306 TCGGCTATTAGGC
129 TCGGCCATTAGGC
*
71759319 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATAC
* *
71759384 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
71759449 TC-GCCATTAGGC
129 TCGGCCATTAGGC
71759461 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
71759526 ACTTTCACATT
64 ACTTTCACATT
71759537 TATTCAAATA
Statistics
Matches: 601, Mismatches: 26, Indels: 26
0.92 0.04 0.04
Matches are distributed among these distances:
135 2 0.00
136 89 0.15
137 1 0.00
141 132 0.22
142 221 0.37
143 108 0.18
144 48 0.08
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:71763042 original size:63 final size:64
Alignment explanation
Indices: 71762962--71763143 Score: 192
Period size: 63 Copynumber: 2.8 Consensus size: 64
71762952 AGAAATTATG
* *
71762962 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
71763025 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTATGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
71763090 A
64 A
* * * *
71763091 AT-TGGCTAGGTCACACGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
71763144 CGAACTATAT
Statistics
Matches: 97, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
62 1 0.01
63 43 0.44
64 3 0.03
65 43 0.44
66 7 0.07
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71763532 original size:1 final size:1
Alignment explanation
Indices: 71763528--71763649 Score: 244
Period size: 1 Copynumber: 122.0 Consensus size: 1
71763518 AAAAATAGTG
71763528 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
71763593 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
71763650 GTGAAAAGGG
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 121 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:71769557 original size:42 final size:42
Alignment explanation
Indices: 71769498--71769609 Score: 134
Period size: 42 Copynumber: 2.7 Consensus size: 42
71769488 TGTCGGTGCT
* *** *
71769498 GATGCCATGTTCCAGACATGGTCTTACACGGGAGCTCGTATC
1 GATGCCATGTCCCAGACATGGTCTTACACAAAAGCTCATATC
*
71769540 GATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATATC
1 GATGCCATGTCCCAGACATGGTCTTACACAAAAGCTCATATC
* * * *
71769582 AACGCCATATCCCAGATATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
71769610 TTGGCACACA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (42 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAAAGCTCATATC
Found at i:71775626 original size:39 final size:39
Alignment explanation
Indices: 71775582--71775815 Score: 302
Period size: 39 Copynumber: 6.4 Consensus size: 39
71775572 AATCTTCGGC
71775582 TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACT
1 TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACT
71775621 TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACT
1 TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACT
*
71775660 TAGCCCAGATAT-A-ACCAGC-CGAATG-CTTC-GGACT
1 TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACT
*
71775694 T-G-CC-GATAT-A-ACCAG-A-GAATG-C-T-AGGACT
1 TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACT
* *
71775723 TAGCCCGGATATAACACCAGCATGAATGCCTTCAGGACT
1 TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACT
* *
71775762 TAGCCCGGATAT-ACACCAACATGAATGCCTTCGGGACT
1 TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACT
71775800 TAGCCCGGATATAACA
1 TAGCCCGGATATAACA
71775816 GCATTATAAA
Statistics
Matches: 179, Mismatches: 3, Indels: 26
0.86 0.01 0.12
Matches are distributed among these distances:
29 7 0.04
30 7 0.04
31 13 0.07
32 7 0.04
33 2 0.01
34 11 0.06
35 5 0.03
36 11 0.06
37 7 0.04
38 38 0.21
39 71 0.40
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (39 bp):
TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACT
Found at i:71782131 original size:39 final size:39
Alignment explanation
Indices: 71782064--71782361 Score: 424
Period size: 39 Copynumber: 7.7 Consensus size: 39
71782054 ACAAAGCATG
* * *
71782064 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
71782104 CGAGACTTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
71782144 CGGG-CTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
71782182 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
71782221 CGGGACTTAGCCCAGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
71782260 CGGGACTTAGCCCGGATATAACGCCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * * * *
71782299 CAGGACTTAGCTCAGATA-AACACCAACACGATTGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
71782337 C-GGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
71782362 TTATAAAGTC
Statistics
Matches: 236, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
37 14 0.06
38 60 0.25
39 145 0.61
40 17 0.07
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:71782467 original size:28 final size:28
Alignment explanation
Indices: 71782434--71782515 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
71782424 ATTTAATCAT
* *
71782434 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
71782462 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * * *
71782490 TCATTATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
71782516 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:71787092 original size:38 final size:38
Alignment explanation
Indices: 71787010--71787175 Score: 190
Period size: 38 Copynumber: 4.3 Consensus size: 38
71787000 AAACCCAAAC
* * * * *
71787010 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGAGA-TTT-AACCCGGAT
* *
71787050 ATAATACCAGCACTAGGCCTGCGAGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
*
71787088 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
* * *
71787126 ATATTACCAGCACGAAGCCTG-TAGGATTTAACCCAGAT
1 ATAATACCAGCACGAAGCCTGCGA-GATTTAACCCGGAT
*
71787164 ATAATTCCAGCA
1 ATAATACCAGCA
71787176 TATAGCCTGC
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
38 85 0.78
39 3 0.03
40 21 0.19
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
Found at i:71787154 original size:76 final size:76
Alignment explanation
Indices: 71787001--71787204 Score: 214
Period size: 76 Copynumber: 2.6 Consensus size: 76
71786991 CGAGGTATAA
* * * * * * * *
71787001 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAG
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATACCAGCACGAA
*
71787066 GCCTGCGAGATTT
64 GCCTGAGAGATTT
* *
71787079 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGC
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGC
71787144 CTGTAG-GATTT
66 CTG-AGAGATTT
* * *
71787155 AACCCAGATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 AACCCAGATATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
71787205 CACATCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
75 1 0.01
76 59 0.55
77 9 0.08
78 38 0.36
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (76 bp):
AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGC
CTGAGAGATTT
Found at i:71791528 original size:42 final size:42
Alignment explanation
Indices: 71791465--71791627 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 42
71791455 CATGTCGCTG
* * **
71791465 TCGATGCCATGTCCCAAACATGGTCTTACACGGGACCTCATA
1 TCGATGCCATATCCCAGACATGGTCTTACACGAAACCTCATA
* *
71791507 TCGATGCCCTATCCCAGACATGGTCTTACACGAAATCTCATA
1 TCGATGCCATATCCCAGACATGGTCTTACACGAAACCTCATA
* ** * * **
71791549 TCAACACCATATCCCAGATATGGTCTTACATGAAATCACATACCGA
1 TCGATGCCATATCCCAGACATGGTCTTACACGAAA-C-C-T-CATA
*
71791595 TGCTGATGCCATATCCCAGATATGGTCTTACAC
1 T-C-GATGCCATATCCCAGACATGGTCTTACAC
71791628 TAGCACACAT
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 65 0.68
44 1 0.01
45 1 0.01
46 3 0.03
47 1 0.01
48 25 0.26
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (42 bp):
TCGATGCCATATCCCAGACATGGTCTTACACGAAACCTCATA
Found at i:71791540 original size:90 final size:90
Alignment explanation
Indices: 71791380--71791547 Score: 221
Period size: 90 Copynumber: 1.9 Consensus size: 90
71791370 GAATGCCAAA
** * * * * * *
71791380 GCCATGTCCCCGACATGGTCTTACATGGGTCTACTTATCGATGCCATATCCTAGATATGGTGTTA
1 GCCATGTCCCAAACATGGTCTTACACGGGCCTACATATCGATGCCATATCCCAGACATGGTCTTA
* *
71791445 TACGAAGTCTCATGTCGCTGTCGAT
66 CACGAAATCTCATGTCGCTGTCGAT
*
71791470 GCCATGTCCCAAACATGGTCTTACACGGGACCT-CATATCGATGCCCTATCCCAGACATGGTCTT
1 GCCATGTCCCAAACATGGTCTTACACGGG-CCTACATATCGATGCCATATCCCAGACATGGTCTT
71791534 ACACGAAATCTCAT
65 ACACGAAATCTCAT
71791548 ATCAACACCA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
90 64 0.97
91 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (90 bp):
GCCATGTCCCAAACATGGTCTTACACGGGCCTACATATCGATGCCATATCCCAGACATGGTCTTA
CACGAAATCTCATGTCGCTGTCGAT
Found at i:71791637 original size:48 final size:48
Alignment explanation
Indices: 71791510--71791676 Score: 143
Period size: 48 Copynumber: 3.6 Consensus size: 48
71791500 CCTCATATCG
* * * * *
71791510 ATGCCCTATCCCAGACATGGTCTTACACGAAATCTCATATC-A-AC--
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCAACACTA
* ** *
71791554 A--CCATATCCCAGATATGGTCTTACATGAAATCACATACCGATGCTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCAACACTA
* *
71791600 ATGCCATATCCCAGATATGGTCTTACACT-AGCA-CACATATCAACACTA
1 ATGCCATATCCCAGATATGGTCTTACA-TGA-AATCACATACCAACACTA
* *
71791648 ATGCCATGTCCCAGACATGGTCTTACATG
1 ATGCCATATCCCAGATATGGTCTTACATG
71791677 GGCTCTCATC
Statistics
Matches: 100, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
42 33 0.33
43 1 0.01
44 2 0.02
46 1 0.01
47 1 0.01
48 60 0.60
49 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCAACACTA
Found at i:71796410 original size:40 final size:40
Alignment explanation
Indices: 71796355--71796598 Score: 375
Period size: 40 Copynumber: 6.1 Consensus size: 40
71796345 TGGATGATAA
* * *
71796355 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
71796395 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
71796435 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
71796475 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
71796515 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
71796555 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
71796595 CCGG
1 CCGG
71796599 TTCAATCCCG
Statistics
Matches: 191, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 3 0.02
40 188 0.98
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:71804559 original size:40 final size:40
Alignment explanation
Indices: 71804504--71804587 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
71804494 TGGATAATAA
* *
71804504 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
71804544 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
71804584 CCGG
1 CCGG
71804588 TTCAATCCCG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 2 0.05
40 39 0.95
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
Found at i:71814320 original size:39 final size:39
Alignment explanation
Indices: 71814294--71814426 Score: 160
Period size: 39 Copynumber: 3.4 Consensus size: 39
71814284 GGGACTGTAG
71814294 GCCCGGATAT-ATTCCAGCACGTAGCCTGTGGACCTCAA
1 GCCCGGATATGATTCCAGCACGTAGCCTGTGGACCTCAA
* * ** *
71814332 GTCCGGATATGTTTCCAGCACGTAGCCTGCAGATCTCAA
1 GCCCGGATATGATTCCAGCACGTAGCCTGTGGACCTCAA
* * * *
71814371 GTCCGGATATGTTTCCAGTACGTAGCCTGCGGACCTCAA
1 GCCCGGATATGATTCCAGCACGTAGCCTGTGGACCTCAA
* *
71814410 GTCCGGATATGTTTCCA
1 GCCCGGATATGATTCCA
71814427 AATATCATGC
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 9 0.10
39 77 0.90
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.26
Consensus pattern (39 bp):
GCCCGGATATGATTCCAGCACGTAGCCTGTGGACCTCAA
Found at i:71816943 original size:47 final size:48
Alignment explanation
Indices: 71816890--71817021 Score: 185
Period size: 47 Copynumber: 2.8 Consensus size: 48
71816880 CACAATTGAT
* *
71816890 AAGTACCTATACCATGACCCGTAGCCAAATCAAGGTAACTTATCCCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCTG
* * **
71816938 -AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCTTTCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCTG
* *
71816985 AAATACCTATACCATGGTCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
71817022 TCATTCGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 41 0.55
48 33 0.45
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCTG
Found at i:71821937 original size:25 final size:24
Alignment explanation
Indices: 71821897--71821968 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
71821887 GGCTATATAA
*
71821897 CGGGAAGCTCAT-AAGAGCTATAAT
1 CGGGAAGCTCATAAAGAGCCAT-AT
* * *
71821921 TGGGAAGTTCATAAAGAACCATAT
1 CGGGAAGCTCATAAAGAGCCATAT
*
71821945 CGGGAAGCTCACAAAGAGCC-TAT
1 CGGGAAGCTCATAAAGAGCCATAT
71821968 C
1 C
71821969 AAAAAGCTCA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
23 4 0.10
24 28 0.72
25 7 0.18
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (24 bp):
CGGGAAGCTCATAAAGAGCCATAT
Found at i:71823420 original size:47 final size:47
Alignment explanation
Indices: 71823355--71823531 Score: 237
Period size: 47 Copynumber: 3.8 Consensus size: 47
71823345 GTGTGAATAA
* **
71823355 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAAAAGT
* * * * *
71823402 TACCTTGATTTGGGTACGGGCAATTGTATAGGTACCCCGAGAAAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAAAAGT
* * * *
71823449 TACCTTGATTTGGCTACGGGGCATGGTATAGGTACTCTGGGACAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAAAAGT
*
71823496 TACCTTGATTTGGTTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
71823532 TATCAATTGT
Statistics
Matches: 112, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 112 1.00
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAAAAGT
Found at i:71823516 original size:94 final size:94
Alignment explanation
Indices: 71823355--71823530 Score: 271
Period size: 94 Copynumber: 1.9 Consensus size: 94
71823345 GTGTGAATAA
* **
71823355 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGGAGTTACCTTGATTTGGGTACG
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGACAAGTTACCTTGATTTGGGTACG
*
71823420 GGCAATTGTATAGGTACCCCGAGAAAAGT
66 GGCAATGGTATAGGTACCCCGAGAAAAGT
* * * *
71823449 TACCTTGATTTGGCTACGGGGCATGGTATAGGTACTCTGGGACAAGTTACCTTGATTTGGTTACG
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGACAAGTTACCTTGATTTGGGTACG
*
71823514 GGCCATGGTATAGGTAC
66 GGCAATGGTATAGGTAC
71823531 TTATCAATTG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 73 1.00
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (94 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGACAAGTTACCTTGATTTGGGTACG
GGCAATGGTATAGGTACCCCGAGAAAAGT
Found at i:71830481 original size:46 final size:46
Alignment explanation
Indices: 71830429--71830647 Score: 239
Period size: 46 Copynumber: 4.7 Consensus size: 46
71830419 TTGGGCATCT
* *
71830429 GAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
* * * * *
71830475 GAACTCGTTGAGTAGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CC
*
71830522 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
* *
71830568 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
* * * *
71830614 GAGCTCGTTGAGTTGAGTTCAAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71830648 GTGGGTTACA
Statistics
Matches: 144, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 4 0.03
46 96 0.67
47 26 0.18
48 4 0.03
50 5 0.03
51 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
Found at i:71830586 original size:93 final size:93
Alignment explanation
Indices: 71830422--71830593 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
71830412 AGGATATTTG
71830422 GGCATCTGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCCGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCCGAACTCGTTGAG
71830487 TAGAGTCCGAGTTCGTGAGATGTAACTA
66 TAGAGTCCGAGTTCGTGAGATGTAACTA
* * *
71830515 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTCGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCCGAACTCGTTGAG
* *
71830580 TTGAGTCTGAGTTC
66 TAGAGTCCGAGTTC
71830594 ACTTATGGAT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCTGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCCAATGCCCGAACTCGTTGAG
TAGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:71851723 original size:26 final size:26
Alignment explanation
Indices: 71851686--71851746 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
71851676 AGATCAAGTA
*
71851686 AAAATAGT-ATTAAAGAGAAATAAAAT
1 AAAA-AGTAATTAAAAAGAAATAAAAT
* *
71851712 AAAAAGTAATTAAAAATAAATAAAGT
1 AAAAAGTAATTAAAAAGAAATAAAAT
*
71851738 TAAAAGTAA
1 AAAAAGTAA
71851747 ACTAATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 3 0.10
26 27 0.90
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (26 bp):
AAAAAGTAATTAAAAAGAAATAAAAT
Found at i:71853090 original size:29 final size:30
Alignment explanation
Indices: 71853058--71853114 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
71853048 ACCATGAATA
* *
71853058 TAATTAAACTAACAA-ATTCAACCAAAAAT
1 TAATGAAACTAACAAGACTCAACCAAAAAT
*
71853087 TAATGACACTAACAAGACTCAACCAAAA
1 TAATGAAACTAACAAGACTCAACCAAAA
71853115 GCAGTCGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.56, C:0.21, G:0.04, T:0.19
Consensus pattern (30 bp):
TAATGAAACTAACAAGACTCAACCAAAAAT
Found at i:71853932 original size:29 final size:29
Alignment explanation
Indices: 71853885--71853963 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
71853875 TTTAATAATC
*
71853885 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
71853915 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
71853944 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
71853964 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:71854003 original size:43 final size:43
Alignment explanation
Indices: 71853945--71854047 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
71853935 TGCATTTCAA
71853945 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
71853988 TCCCGCACACTTAGTGCCAATCTCACAACTGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
71854031 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
71854048 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:71855950 original size:37 final size:37
Alignment explanation
Indices: 71855900--71855978 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
71855890 TTATTACGAA
* * *
71855900 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
71855937 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
71855974 GTCTT
1 GTCTT
71855979 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:71856184 original size:47 final size:47
Alignment explanation
Indices: 71856097--71856666 Score: 897
Period size: 47 Copynumber: 12.1 Consensus size: 47
71856087 CCTTTCGGGA
* * * * * * * * *
71856097 CTTATAACATTTATGCACTTTCACATCCATTACGTTGGCCAGTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71856144 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71856191 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71856238 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71856285 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71856332 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71856379 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71856428 CTTATTACATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71856475 CCTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71856522 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71856569 CCTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71856616 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71856663 CTTA
1 CTTA
71856667 CTATCATTTC
Statistics
Matches: 488, Mismatches: 33, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 443 0.91
49 45 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71867397 original size:13 final size:13
Alignment explanation
Indices: 71867379--71867407 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
71867369 TTTAGTTTAA
71867379 TTAGTTAATTAGT
1 TTAGTTAATTAGT
71867392 TTAGTTAATTAGT
1 TTAGTTAATTAGT
71867405 TTA
1 TTA
71867408 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:71872573 original size:47 final size:47
Alignment explanation
Indices: 71872515--71872651 Score: 247
Period size: 47 Copynumber: 2.9 Consensus size: 47
71872505 TTAGGATTTT
* *
71872515 AATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
*
71872562 AATGTGGTGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
71872609 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAAT
71872652 ATGTGTGATA
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
Found at i:71872655 original size:19 final size:19
Alignment explanation
Indices: 71872631--71872670 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
71872621 GTGAACATGC
71872631 ATATGTGTGATAAGGCCGA
1 ATATGTGTGATAAGGCCGA
71872650 ATATGTGTGATAAGGCCGA
1 ATATGTGTGATAAGGCCGA
71872669 AT
1 AT
71872671 GGCCAACGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (19 bp):
ATATGTGTGATAAGGCCGA
Found at i:71872659 original size:66 final size:66
Alignment explanation
Indices: 71872584--71872717 Score: 250
Period size: 66 Copynumber: 2.0 Consensus size: 66
71872574 GTGAACATGC
*
71872584 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
71872649 A
66 A
*
71872650 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
71872715 A
66 A
71872716 AT
1 AT
71872718 GGCCAATGTG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (66 bp):
ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
A
Found at i:71872662 original size:113 final size:113
Alignment explanation
Indices: 71872537--71872758 Score: 399
Period size: 113 Copynumber: 2.0 Consensus size: 113
71872527 GTGAGCATGC
* *
71872537 ATATATGTGATAAGGCCGAATGGCCAATGTGGTGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
*
71872602 AATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
66 AATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
* *
71872650 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
71872715 AATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
66 AATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
71872759 TAGAATGGCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 104 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (113 bp):
ATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGA
Found at i:71872706 original size:47 final size:47
Alignment explanation
Indices: 71872650--71872779 Score: 215
Period size: 47 Copynumber: 2.8 Consensus size: 47
71872640 ATAAGGCCGA
* *
71872650 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAGCATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
71872697 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* **
71872744 ATATATGTGATAAGGTAGAATGGCCAATGTGATGAA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
71872780 CGTGTAAGTG
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 78 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (47 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:71872812 original size:47 final size:47
Alignment explanation
Indices: 71872650--71872819 Score: 173
Period size: 47 Copynumber: 3.6 Consensus size: 47
71872640 ATAAGGCCGA
* * * * *
71872650 ATATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAGCATGC
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAACGTGAACATGC
* * *
71872697 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAACGTGAACATGC
* ** * *
71872744 ATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGTAA-GTGT
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAACGTG-AACATGC
* *
71872791 ATATATGTGGCGAA-GCCGAATGGCTAATG
1 ATATATGT-GAGAAGGCCGAATGGCCAATG
71872820 CGAAATGTGT
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
47 103 0.95
48 5 0.05
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAACGTGAACATGC
Found at i:71872853 original size:46 final size:46
Alignment explanation
Indices: 71872803--71872928 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
71872793 ATATGTGGCG
*
71872803 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATCGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATCGATACGAGGTA
* * * * * *
71872849 AAGCCGAGTGGCTAATGCAAAACGTATATGAGATGGATACGTGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATCGATACGAGGTA
* * * * *
71872895 AAACCAAATGGCTAATGTGAGATATGTATGAGAT
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGAT
71872929 GTGTATATAT
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAATGTGTATGAGATCGATACGAGGTA
Found at i:71874478 original size:40 final size:40
Alignment explanation
Indices: 71874423--71874619 Score: 358
Period size: 40 Copynumber: 4.9 Consensus size: 40
71874413 ATTGAGAGTT
71874423 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
**
71874463 ATATATCTAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
71874503 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
71874543 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
71874583 ACATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
71874620 CTGTTCTGAT
Statistics
Matches: 151, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 151 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:71887292 original size:13 final size:13
Alignment explanation
Indices: 71887274--71887301 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
71887264 TATGTGAAAT
71887274 TTAACGATATTGA
1 TTAACGATATTGA
71887287 TTAACGATATTGA
1 TTAACGATATTGA
71887300 TT
1 TT
71887302 GATACCAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (13 bp):
TTAACGATATTGA
Found at i:71888648 original size:13 final size:13
Alignment explanation
Indices: 71888626--71888658 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
71888616 AAGGGTTTGT
71888626 TTAT-TAAACTAA
1 TTATCTAAACTAA
71888638 TTATCTAAACTAA
1 TTATCTAAACTAA
*
71888651 TTAACTAA
1 TTATCTAA
71888659 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:71891615 original size:4 final size:5
Alignment explanation
Indices: 71891563--71891644 Score: 80
Period size: 5 Copynumber: 15.8 Consensus size: 5
71891553 TATGTCTTTC
*
71891563 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAT AAAAAT AAAA-
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT AAAAT -AAAAT AAAAT
71891608 ATAAAT AAAAT AAAAT AAAAT AAAAAT AAGAAT AAAA
1 A-AAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAA
71891645 AAAGATAGAA
Statistics
Matches: 66, Mismatches: 2, Indels: 18
0.77 0.02 0.21
Matches are distributed among these distances:
3 3 0.05
4 1 0.02
5 38 0.58
6 24 0.36
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:71891623 original size:31 final size:31
Alignment explanation
Indices: 71891583--71891647 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
71891573 AATAAAATTG
71891583 AAATGAAAATAAAATAAAAATAAAAATAAATA
1 AAATGAAAATAAAATAAAAATAAAAATAAA-A
*
71891615 AAAT-AAAATAAAATAAAAATAAGAATAAAA
1 AAATGAAAATAAAATAAAAATAAAAATAAAA
71891645 AAA
1 AAA
71891648 GATAGAAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.12
31 24 0.75
32 4 0.12
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (31 bp):
AAATGAAAATAAAATAAAAATAAAAATAAAA
Found at i:71891635 original size:6 final size:6
Alignment explanation
Indices: 71891583--71891645 Score: 67
Period size: 6 Copynumber: 10.5 Consensus size: 6
71891573 AATAAAATTG
* *
71891583 AAATGA AAAT-A AAATAA AAATAA AAATAA ATAAAATA AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA A-AATA-A AAATAA AAATAA
*
71891631 AAATAA GAATAA AAA
1 AAATAA AAATAA AAA
71891646 AAGATAGAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
5 10 0.20
6 32 0.65
7 5 0.10
8 2 0.04
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:71895285 original size:5 final size:5
Alignment explanation
Indices: 71895275--71895303 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
71895265 TGCTCTCTTT
71895275 TTTTC TTTTC TTTTC -TTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
71895304 ACGAGCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:71895295 original size:14 final size:14
Alignment explanation
Indices: 71895270--71895303 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
71895260 ACATATGCTC
71895270 TCTTTT-TTTCTTT
1 TCTTTTCTTTCTTT
71895283 TCTTTTCTTTCTTT
1 TCTTTTCTTTCTTT
71895297 TCTTTTC
1 TCTTTTC
71895304 ACGAGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TCTTTTCTTTCTTT
Found at i:71895791 original size:24 final size:24
Alignment explanation
Indices: 71895759--71895833 Score: 150
Period size: 24 Copynumber: 3.1 Consensus size: 24
71895749 ATTTAAATAA
71895759 TAGAACTTTATTCATACTGAATTT
1 TAGAACTTTATTCATACTGAATTT
71895783 TAGAACTTTATTCATACTGAATTT
1 TAGAACTTTATTCATACTGAATTT
71895807 TAGAACTTTATTCATACTGAATTT
1 TAGAACTTTATTCATACTGAATTT
71895831 TAG
1 TAG
71895834 CATACTAAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (24 bp):
TAGAACTTTATTCATACTGAATTT
Found at i:71904145 original size:46 final size:46
Alignment explanation
Indices: 71904095--71904270 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71904085 TGGTTGAGCA
71904095 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71904141 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71904186 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71904234 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71904271 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 28 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71904251 original size:93 final size:93
Alignment explanation
Indices: 71904092--71904263 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71904082 GGATGGTTGA
*
71904092 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
71904157 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
71904185 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
71904250 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71904264 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71911255 original size:46 final size:46
Alignment explanation
Indices: 71911205--71911380 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
71911195 TGGTTGAGCA
*
71911205 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
71911251 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
71911296 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
71911344 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71911381 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 63 0.57
47 29 0.26
48 4 0.04
50 6 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:71911361 original size:93 final size:93
Alignment explanation
Indices: 71911202--71911373 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
71911192 GGATGGTTGA
* * *
71911202 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
71911267 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71911295 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
71911360 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71911374 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71911616 original size:24 final size:24
Alignment explanation
Indices: 71911584--71911631 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
71911574 GTATTGATAC
71911584 AACCATGATAAGGTAATAAGATGA
1 AACCATGATAAGGTAATAAGATGA
71911608 AACCATGATAAGGTAATAAGATGA
1 AACCATGATAAGGTAATAAGATGA
71911632 TGAAAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.21, T:0.21
Consensus pattern (24 bp):
AACCATGATAAGGTAATAAGATGA
Found at i:71920697 original size:436 final size:435
Alignment explanation
Indices: 71919885--71920742 Score: 1680
Period size: 436 Copynumber: 2.0 Consensus size: 435
71919875 ACCTGGACTT
71919885 TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
1 TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
71919950 CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
66 CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
71920015 ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
131 ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
71920080 CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
196 CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
71920145 TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
261 TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
71920210 TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCAAG
326 TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCAAG
*
71920275 CTGTGGGATGGCTACTTCGGGCCACGATGGGCCGAAAGAGGCCATG
391 CTGTAGGATGGCTACTTCGGGCCACG-TGGGCCGAAAGAGGCCATG
71920321 TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
1 TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
71920386 CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
66 CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
71920451 ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
131 ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
71920516 CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
196 CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
71920581 TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
261 TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
*
71920646 TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCTAG
326 TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCAAG
*
71920711 CTGTAGGATGGCTACTTCGGGCCATGTGGGCC
391 CTGTAGGATGGCTACTTCGGGCCACGTGGGCC
71920743 CAATGGTCCT
Statistics
Matches: 419, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
435 6 0.01
436 413 0.99
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (435 bp):
TGGCCTTTAGACCTTATAATTAACTGGGGATAAAATATAACACAAAAAGCCTTGTGGCTTAGTGG
CAAGTAGCATGTGGAACATCTGAGGGGAGGCATGGATTCAAATCCATGGCAAGCAAGAAGCATTT
ATTTTGCTAACAGGGGGCGGCAAGAGTTGGTGTTGAATTTAAACTCTGATGTTGGAGGGATCCCA
CATCGGGAAGCTAACATAAGAGTGGTTGCGAAGCTGGCTTTAAATAGAGGGAACCATGAGGAGAG
TAAAGGTACATTTCTTGGCTGATCCCTTTCGCTTTATGGCGTGCTCATTTGGGTTGGGCGTTGGC
TAAGAGTGCTTGGAGAGTGGATTAACTCCAGTCTCCAATCAGGTCTATATTTCTCACTACTCAAG
CTGTAGGATGGCTACTTCGGGCCACGTGGGCCGAAAGAGGCCATG
Found at i:71920991 original size:27 final size:27
Alignment explanation
Indices: 71920954--71921251 Score: 240
Period size: 27 Copynumber: 10.8 Consensus size: 27
71920944 ATACCTCCAA
* *
71920954 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
71920981 TTATAAAATTACTCAAATATCCTCGATCCTAGT
1 TTGTAAAATTAC-CAAA-ATAC-C---CCTGGT
* * * *
71921014 TTGTAAAATTACTAGAATACCCTTCGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
71921041 TTATAAAATCAGCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
71921068 TTGTAAAATTACCAAAAAACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
**
71921095 TTACAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
71921122 TTGTAAAATTATCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
71921149 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGGT
* ** **
71921176 TTGTGAAATTACTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GGT
*** **
71921203 TTGTAAAATTATTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GGT
*
71921230 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
71921252 TTATTTTATA
Statistics
Matches: 219, Mismatches: 44, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
26 4 0.02
27 185 0.84
28 6 0.03
29 2 0.01
30 2 0.01
31 3 0.01
32 2 0.01
33 15 0.07
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:71921401 original size:27 final size:27
Alignment explanation
Indices: 71921290--71921404 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 27
71921280 CGATTTACAA
* *
71921290 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
71921317 AAACATCGAAATACCTCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
71921344 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
71921371 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
71921398 AATTACC
1 AATTACC
71921405 ATTTTACCCC
Statistics
Matches: 70, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:71921402 original size:54 final size:54
Alignment explanation
Indices: 71921288--71921403 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
71921278 CTCGATTTAC
* * *
71921288 AAAATTACTGAAATACCCTTGTAGGGTAGAAACATCGAAATACCTCTGTATGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAACACCGAAATACCTCTGTAGGGT
* ** * *
71921342 AGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACC-CTTGTGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAACACCGAAATACCTC-TGTAGGGT
71921396 AAAATTAC
1 AAAATTAC
71921404 CATTTTACCC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 51 0.98
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (54 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAAACACCGAAATACCTCTGTAGGGT
Found at i:71921959 original size:31 final size:31
Alignment explanation
Indices: 71921921--71922026 Score: 167
Period size: 31 Copynumber: 3.4 Consensus size: 31
71921911 ATTCACATTC
71921921 TGATTTTGATTCTGTTACCTGATACTGATTT
1 TGATTTTGATTCTGTTACCTGATACTGATTT
*
71921952 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTTTGATTCTGTTACCTGATACTGATTT
* * * *
71921983 TAATTCTGATTCTGTCACCTGATTCTGATTT
1 TGATTTTGATTCTGTTACCTGATACTGATTT
71922014 TGATTTTGATTCT
1 TGATTTTGATTCT
71922027 AGTTCTGATA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 67 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
TGATTTTGATTCTGTTACCTGATACTGATTT
Found at i:71921996 original size:6 final size:6
Alignment explanation
Indices: 71921917--71922035 Score: 66
Period size: 6 Copynumber: 19.3 Consensus size: 6
71921907 TTGCATTCAC
* * * *
71921917 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
71921966 -TTACCTG ATACTG ATTCTA ATTCTG ATTCTG -TCACCTG ATTCTG ATTTTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
71922016 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
71922036 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
5 6 0.07
6 69 0.78
7 10 0.11
8 3 0.03
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:71922014 original size:62 final size:61
Alignment explanation
Indices: 71921917--71922051 Score: 182
Period size: 62 Copynumber: 2.2 Consensus size: 61
71921907 TTGCATTCAC
* * * *
71921917 ATTCTGATTTTGATTCTGTTACCTGATACTGATTTTGATTTTGATTCT-GTTACCTGATACTG
1 ATTCTAATTCTGATTCTGTCACCTGATACTGATTTTGATTTTGATTCTAGTT--CTGATAATG
*
71921979 ATTCTAATTCTGATTCTGTCACCTGATTCTGATTTTGATTTTGATTCTAGTTCTGATAATG
1 ATTCTAATTCTGATTCTGTCACCTGATACTGATTTTGATTTTGATTCTAGTTCTGATAATG
* *
71922040 TTTCTTATTCTG
1 ATTCTAATTCTG
71922052 TAATGGGTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
61 18 0.28
62 44 0.68
63 3 0.05
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (61 bp):
ATTCTAATTCTGATTCTGTCACCTGATACTGATTTTGATTTTGATTCTAGTTCTGATAATG
Found at i:71924152 original size:27 final size:27
Alignment explanation
Indices: 71924119--71924410 Score: 334
Period size: 27 Copynumber: 10.8 Consensus size: 27
71924109 ATACCCCCAG
* *
71924119 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * * *
71924146 TTATAAAATTACCCAAATA-TCCTCGAT
1 TTGTAAAATTACCAAAATACCCCT-GGT
* *
71924173 TTGTACAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
**
71924200 TTACAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
71924227 TTGTAAAATTACTAGAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
71924254 TTATAAAATCACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
71924281 TTGTAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
** * *
71924308 TTACAAAATTGCCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
71924335 TTGTAAAATTATCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
71924362 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGGT
* **
71924389 TTGTGAAATTACTGAAATACCC
1 TTGTAAAATTACCAAAATACCC
71924411 TCAACCTGTA
Statistics
Matches: 219, Mismatches: 44, Indels: 4
0.82 0.16 0.01
Matches are distributed among these distances:
26 2 0.01
27 215 0.98
28 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:71924234 original size:81 final size:80
Alignment explanation
Indices: 71924119--71924463 Score: 323
Period size: 81 Copynumber: 4.3 Consensus size: 80
71924109 ATACCCCCAG
* * * *
71924119 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAAATATCCTCGATTTGTACAATTA
1 TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATA-CCTCGATTTGTAAAATTA
*
71924184 CCAAAATACCCTTGGT
65 CCAAAATACCCCTGGT
** * * * * * * *
71924200 TTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAATCA
1 TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATA-CCTCGATTTGTAAAATTA
71924265 CCAAAATACCCCTGGT
65 CCAAAATACCCCTGGT
* * * * *
71924281 TTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTGCCAAAATACCCCTAGTTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCTCGA-TTTGTAAAATTA
* *
71924346 TCAAAATACCCCTAGT
65 CCAAAATACCCCTGGT
* * * ** * **
71924362 TTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCAACCTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATA-CCTCGATTTGTAAAATTA
** * **
71924427 TTAAAAGA-CCCTCGAC
65 CCAAAATACCCCT-GGT
*
71924443 TTGTAAAATTACCAAAGTACC
1 TTGTAAAATTACCAAAATACC
71924464 ATTGATTTAC
Statistics
Matches: 212, Mismatches: 49, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
80 6 0.03
81 202 0.95
82 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (80 bp):
TTGTAAAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCTCGATTTGTAAAATTAC
CAAAATACCCCTGGT
Found at i:71924424 original size:27 final size:27
Alignment explanation
Indices: 71924394--71924454 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
71924384 CTGATTTGTG
* *
71924394 AAATTACTGAAATACCCTCAACCTGTA
1 AAATTACTAAAAGACCCTCAACCTGTA
* * *
71924421 AAATTATTAAAAGACCCTCGACTTGTA
1 AAATTACTAAAAGACCCTCAACCTGTA
71924448 AAATTAC
1 AAATTAC
71924455 CAAAGTACCA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACTAAAAGACCCTCAACCTGTA
Found at i:71924583 original size:53 final size:54
Alignment explanation
Indices: 71924501--71924614 Score: 167
Period size: 53 Copynumber: 2.1 Consensus size: 54
71924491 CTCGATTTAC
*
71924501 AAAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATA-CCTTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
* * * * *
71924554 AGAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
71924608 AAAATTA
1 AAAATTA
71924615 GCATTTTACC
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 37 0.70
54 16 0.30
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (54 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
Found at i:71924613 original size:27 final size:27
Alignment explanation
Indices: 71924501--71924614 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 27
71924491 CTCGATTTAC
*
71924501 AAAATTACTGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
71924528 AGAAA-TACCGAAATA-CCTTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* ** *
71924554 AGAATTATTGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
71924581 AGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
71924608 AAAATTA
1 AAAATTA
71924615 GCATTTTACC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
25 2 0.03
26 20 0.27
27 48 0.66
28 3 0.04
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:71924916 original size:26 final size:26
Alignment explanation
Indices: 71924861--71924939 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
71924851 CTCGCTGCAA
71924861 TCTGGTGGCCTCA-CCACATATATCTGT
1 TCTGGTGGCCT-AGCCACA-ATATCTGT
71924888 TCTGGTGGCCTAGCCACAATATCTGT
1 TCTGGTGGCCTAGCCACAATATCTGT
71924914 TCTGGTGGCCTAGCCACAATATCTGT
1 TCTGGTGGCCTAGCCACAATATCTGT
71924940 ATTTGGTGAC
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
26 35 0.69
27 16 0.31
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.32
Consensus pattern (26 bp):
TCTGGTGGCCTAGCCACAATATCTGT
Found at i:71924962 original size:53 final size:53
Alignment explanation
Indices: 71924861--71924962 Score: 118
Period size: 53 Copynumber: 1.9 Consensus size: 53
71924851 CTCGCTGCAA
* * *
71924861 TCTGGTGGCCTCACCACATATATCTGTTCTGGTGGCCTAGCCACAATATCTGT
1 TCTGGTGGCCTCACCACATATATCTGTTCTGGTGACCTAGACAAAATATCTGT
* * *
71924914 TCTGGTGGCCT-AGCCACA-ATATCTGTATTTGGTGACTTCGACAAAATAT
1 TCTGGTGGCCTCA-CCACATATATCTGT-TCTGGTGACCTAGACAAAATAT
71924963 TTGGCAGCCT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
52 9 0.22
53 32 0.78
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (53 bp):
TCTGGTGGCCTCACCACATATATCTGTTCTGGTGACCTAGACAAAATATCTGT
Found at i:71925119 original size:31 final size:31
Alignment explanation
Indices: 71925084--71925198 Score: 160
Period size: 31 Copynumber: 3.7 Consensus size: 31
71925074 TTGCATTCAC
*
71925084 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTCTGATTCTGTTACCTGATATTG
* * *
71925115 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTTACCTGATATTG
*
71925146 ATTCTGATTCTGATTCTGTCACCTGAT-TCTG
1 ATTCTGATTCTGATTCTGTTACCTGATAT-TG
71925177 ATTCTGATTCTGATTCTAGTTA
1 ATTCTGATTCTGATTCT-GTTA
71925199 TGATAATGTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
31 72 0.96
32 3 0.04
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATATTG
Found at i:71925122 original size:6 final size:6
Alignment explanation
Indices: 71925084--71925193 Score: 84
Period size: 6 Copynumber: 17.8 Consensus size: 6
71925074 TTGCATTCAC
* *
71925084 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * *
71925133 -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
71925183 ATTCTG ATTCT
1 ATTCTG ATTCT
71925194 AGTTATGATA
Statistics
Matches: 83, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
5 6 0.07
6 64 0.77
7 9 0.11
8 3 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:71925202 original size:18 final size:18
Alignment explanation
Indices: 71925084--71925193 Score: 57
Period size: 19 Copynumber: 5.9 Consensus size: 18
71925074 TTGCATTCAC
*
71925084 ATTCTGATTTTGATTCTG
1 ATTCTGATTATGATTCTG
71925102 -TTACCTGA-TATTGATTCTG
1 ATT--CTGATTA-TGATTCTG
* *
71925121 ATTTTGATTCTG-TTACCTG
1 ATTCTGATTATGATT--CTG
* * *
71925140 ATACTAATTCTGATTCTG
1 ATTCTGATTATGATTCTG
*
71925158 ATTCTG-TCACCTGATTCTG
1 ATTCTGATTA--TGATTCTG
*
71925177 ATTCTGATTCTGATTCT
1 ATTCTGATTATGATTCT
71925194 AGTTATGATA
Statistics
Matches: 69, Mismatches: 12, Indels: 22
0.67 0.12 0.21
Matches are distributed among these distances:
17 5 0.07
18 20 0.29
19 39 0.57
20 5 0.07
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (18 bp):
ATTCTGATTATGATTCTG
Found at i:71927804 original size:47 final size:47
Alignment explanation
Indices: 71927735--71928498 Score: 1213
Period size: 47 Copynumber: 16.1 Consensus size: 47
71927725 GAAATGATAG
*
71927735 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
71927782 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
71927829 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
71927876 TAGGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
71927923 TAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
71927970 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
71928017 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
71928064 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
71928111 TACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
71928158 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
71928207 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
71928256 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGA
71928305 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
71928352 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
71928399 TAAGGCCCAATGGCCAATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
71928448 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
71928495 TAAG
1 TAAG
71928499 TCCCGAAGGG
Statistics
Matches: 671, Mismatches: 40, Indels: 12
0.93 0.06 0.02
Matches are distributed among these distances:
47 494 0.74
49 174 0.26
51 3 0.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:71928673 original size:37 final size:37
Alignment explanation
Indices: 71928617--71928695 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
71928607 CCGAGCTCTA
* ** *
71928617 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
*
71928654 AAGACCCGATAACTTCGTGTGAAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
71928691 AAGAC
1 AAGAC
71928696 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
Found at i:71930462 original size:40 final size:40
Alignment explanation
Indices: 71930373--71930594 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
71930363 TTGAATGCTG
* *
71930373 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
71930412 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
71930452 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71930490 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71930530 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
71930571 -CAGGGCTATGTCCCGAA-GCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71930595 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 35 0.21
39 25 0.15
40 93 0.57
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71930513 original size:78 final size:79
Alignment explanation
Indices: 71930373--71930594 Score: 240
Period size: 78 Copynumber: 2.8 Consensus size: 79
71930363 TTGAATGCTG
* * * * * *
71930373 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAA-TTACTATAACAGGGCTAAG-TCCCGAAGGCAT
*
71930435 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
* * *
71930452 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATAA-CAGGGCTAAGTCCCGAAGGCATTT
*
71930515 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* *
71930530 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACAGGGCTATGTCCCGAA-GCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTATAACAGGGCTAAGTCCCGAAGGCATTT
71930594 G
65 G
71930595 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
77 10 0.08
78 47 0.39
79 25 0.20
80 38 0.31
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATAACAGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:71952766 original size:22 final size:22
Alignment explanation
Indices: 71952738--71952859 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
71952728 TTCCACATCC
71952738 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
71952760 ATCACATATATACACTTTCAG-ATT
1 ATCACAT-T-GGC-CATTCGGCCTT
71952784 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
71952807 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
71952831 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
71952854 ATCACA
1 ATCACA
71952860 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 27 0.39
23 11 0.16
24 11 0.16
25 21 0.30
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:71952773 original size:47 final size:47
Alignment explanation
Indices: 71952704--71953006 Score: 439
Period size: 47 Copynumber: 6.4 Consensus size: 47
71952694 CCAATTGCCC
* * * *
71952704 TTCGGACTTATCACATTTATACACT-TCCACATCCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGGCCA
*
71952751 TTCGGCCTTATCACATATATACACT-TTCAGATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGGCCA
* *
71952798 TTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCA
* *
71952845 TTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCA
* *
71952892 TTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCA
* *
71952939 TTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCA
* *
71952986 CTCGGCCCTATCACATATATA
1 TTCGGCCTTATCACATATATA
71953007 TACTTGTACA
Statistics
Matches: 239, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 238 1.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
TTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCA
Found at i:71956393 original size:40 final size:40
Alignment explanation
Indices: 71956348--71956824 Score: 739
Period size: 40 Copynumber: 12.1 Consensus size: 40
71956338 TGAATACACG
* * * *
71956348 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
71956388 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
71956428 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
71956468 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
71956508 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
71956548 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
71956588 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
71956628 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
71956668 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
71956708 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
71956748 TCACTAGCACGAATGCTCTTCGGGACTTA--CCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
71956786 T--CTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
71956823 TC
1 TC
71956825 GTCGAGACCT
Statistics
Matches: 409, Mismatches: 25, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
36 26 0.06
37 3 0.01
38 16 0.04
40 364 0.89
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:71956920 original size:38 final size:38
Alignment explanation
Indices: 71956878--71956952 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
71956868 GAATTTTAAT
*
71956878 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
71956916 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
71956953 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:71959432 original size:22 final size:22
Alignment explanation
Indices: 71959404--71959525 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
71959394 TTCCACATCC
71959404 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
71959426 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
71959450 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
71959473 ATCTCATATTTG-CATGTTC-ACATT
1 A--TCACATTGGCCA--TTCGGCCTT
71959497 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
71959520 ATCACA
1 ATCACA
71959526 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:71959439 original size:47 final size:47
Alignment explanation
Indices: 71959376--71959625 Score: 360
Period size: 47 Copynumber: 5.3 Consensus size: 47
71959366 CCCTTCGGGA
* * *
71959376 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
71959423 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
71959470 CTTATCTCATATTTGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
71959517 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
71959564 CTTATCACACATACACATGTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
71959611 CCTATCACATATATA
1 CTTATCACATATATA
71959626 TACTTGTACA
Statistics
Matches: 187, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 186 0.99
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:71964313 original size:47 final size:47
Alignment explanation
Indices: 71964240--71964380 Score: 164
Period size: 47 Copynumber: 3.0 Consensus size: 47
71964230 AGGGTAAGGT
* *
71964240 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTATATCTCAA
* * *
71964287 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GATTATCATCTCGTAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTAT-ATCTC--AA
* *
71964336 -CCGATG-CATGTCGTAGACAT-GTCTTACACTGGCTTACATCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTATATCTCAA
71964380 G
1 G
71964381 GCTAATGCAT
Statistics
Matches: 79, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
44 2 0.03
46 19 0.24
47 51 0.65
48 5 0.06
49 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTATATCTCAA
Found at i:71968206 original size:40 final size:40
Alignment explanation
Indices: 71968157--71968232 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
71968147 TTATTGCTTC
*
71968157 GGCTATAAATAGCACTTAGTGTGCGTATTAGAATAGGTTT
1 GGCTATAAATAGCACTTAGTGTGCGAATTAGAATAGGTTT
*
71968197 GGCTCTAAATAGCACTTAGTGTGCGAATTAGAATAG
1 GGCTATAAATAGCACTTAGTGTGCGAATTAGAATAG
71968233 CTTCAGCTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.32
Consensus pattern (40 bp):
GGCTATAAATAGCACTTAGTGTGCGAATTAGAATAGGTTT
Found at i:71968252 original size:40 final size:40
Alignment explanation
Indices: 71968152--71968242 Score: 128
Period size: 40 Copynumber: 2.3 Consensus size: 40
71968142 TTTCATTATT
* *
71968152 GCTTCGGCTATAAATAGCACTTAGTGTGCGTATTAGAATA
1 GCTTCAGCTATAAATAGCACTTAGTGTGCGAATTAGAATA
* ** *
71968192 GGTTTGGCTCTAAATAGCACTTAGTGTGCGAATTAGAATA
1 GCTTCAGCTATAAATAGCACTTAGTGTGCGAATTAGAATA
71968232 GCTTCAGCTAT
1 GCTTCAGCTAT
71968243 CTATGGCACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (40 bp):
GCTTCAGCTATAAATAGCACTTAGTGTGCGAATTAGAATA
Found at i:71969857 original size:48 final size:48
Alignment explanation
Indices: 71969786--71969966 Score: 281
Period size: 48 Copynumber: 3.8 Consensus size: 48
71969776 TCTCATATCG
* * ****
71969786 ATGCCATGTCCCAGACATGGTCTTACACAAAATCACATATCGATGCCA
1 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
* *
71969834 ATGCCATATCCCGGATATGGTCTTACATGGGATCACATATCGATGGCA
1 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
*
71969882 ATGCCATATCCTAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
71969930 ATGCCATATCCCAGATATGGTCTTACATGGGATCACA
1 ATGCCATATCCCAGATATGGTCTTACATGGGATCACA
71969967 CATAACCCTA
Statistics
Matches: 121, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 121 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:71977437 original size:13 final size:13
Alignment explanation
Indices: 71977419--71977453 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
71977409 CATTGGTGCA
71977419 CACGGCCATGTTG
1 CACGGCCATGTTG
71977432 CACGGCCATGTTG
1 CACGGCCATGTTG
71977445 CACGGCCAT
1 CACGGCCAT
71977454 TTCATTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.20
Consensus pattern (13 bp):
CACGGCCATGTTG
Found at i:71987029 original size:41 final size:40
Alignment explanation
Indices: 71986882--71987104 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
71986872 AACTCACGTA
* * *
71986882 CCTTCGGGATTTAG-CCGGATATAG-CAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
71986921 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
71986961 CCTTC-GGACTTAGCTCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AAATG
* *
71987001 CCTTCGGGTCTTAGCCCGGATATCGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
71987041 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA-TG
*
71987082 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
71987105 CATCCGAATA
Statistics
Matches: 165, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 39 0.24
40 77 0.47
41 49 0.30
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:71987088 original size:81 final size:80
Alignment explanation
Indices: 71986882--71987105 Score: 310
Period size: 81 Copynumber: 2.8 Consensus size: 80
71986872 AACTCACGTA
* * * * * *
71986882 CCTTCGGGA-TTTAGCCGGATATAG-CAAATCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATC
*
71986945 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
* *
71986961 CCTTC-GGACTTAGCTCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGTCACTAGCAC-AAATGCCTTCGGGTCTTAGCCCGGATATC
*
71987025 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
71987041 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGTGCCTTCGGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAA-TGCCTTCGGGTCTTAGCCCGGATATC
71987106 ATCCGAATAA
Statistics
Matches: 128, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
78 3 0.02
79 22 0.17
80 50 0.39
81 53 0.41
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCG
TAACTAGCACAAATG
Found at i:71993206 original size:40 final size:40
Alignment explanation
Indices: 71993169--71993394 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
71993159 GCTACTCGTT
* * *
71993169 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
71993209 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
71993249 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
71993289 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
71993329 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
71993370 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
71993395 CATCATTCAA
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 149 0.90
41 14 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:71993378 original size:120 final size:120
Alignment explanation
Indices: 71993169--71993394 Score: 289
Period size: 120 Copynumber: 1.9 Consensus size: 120
71993159 GCTACTCGTT
71993169 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
71993234 ATTTAGTAACTTGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * **
71993289 CAAATGCCTTCG-GATCTTAGTCCGGATT-TAGTAACTCGTACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGAGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* * * *
71993351 CGGATATGGTCACCTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
63 CAGATATAGT-AACTAGCACAAATGCCTTCGGGACTTAACCCGGA
71993395 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
119 5 0.05
120 74 0.81
121 12 0.13
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:71993388 original size:80 final size:79
Alignment explanation
Indices: 71993162--71993394 Score: 281
Period size: 80 Copynumber: 2.9 Consensus size: 79
71993152 GGATATAGCT
* * *
71993162 ACTCGTTCAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGTACAAATGCCTTCG-GACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
71993227 AACCCAGATTTAGTA
65 AGCCCGGATTTAGTA
* * * *
71993242 ACTTGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCT
1 ACTCGTACAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CT
*
71993306 TAGTCCGGATTTAGTA
64 TAGCCCGGATTTAGTA
* * * *
71993322 ACTCGTACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACCTAGCACAAA-GCCTTCGGGACT
1 ACTCGTACAAATGCCTTCGGA-CTTAGCCCGGATATAGT-AACTCGCACAAATGCCTTCGGGACT
71993386 TAGCCCGGA
64 TAGCCCGGA
71993395 CATCATTCAA
Statistics
Matches: 129, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
79 6 0.05
80 109 0.84
81 14 0.11
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
ACTCGTACAAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
GCCCGGATTTAGTA
Found at i:71997299 original size:49 final size:49
Alignment explanation
Indices: 71997236--71997410 Score: 242
Period size: 49 Copynumber: 3.5 Consensus size: 49
71997226 CTGGTATGCA
* * *
71997236 TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
* * * * * * *
71997285 TAGTAGCCTGCACTTAGTACTACACAAGTGATCATAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCA-A-TTATCTGGTACACG
71997336 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
71997385 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
71997411 CGTGACCTCA
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 66 0.62
50 2 0.02
51 39 0.36
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
Found at i:71997354 original size:100 final size:100
Alignment explanation
Indices: 71997228--71997415 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
71997218 GAAGCTATCT
* *
71997228 GGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACATGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
71997293 TGCACTTAGTACTACACAAGTGATCATAGTTTTCG
66 TGCACTTAGTACTACACAAGTGATCATAGTTTTCG
* *
71997328 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
*
71997393 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACAAGTGA
71997416 CCTCACAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACAAGTGATCATAGTTTTCG
Found at i:72000411 original size:29 final size:28
Alignment explanation
Indices: 72000356--72000470 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
72000346 GTTAGCATGA
* *
72000356 ATATGAATGTGATTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
72000384 ATATAAATGTGACTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
72000413 ACATACAGGTGATTTGGGTCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * * *
72000442 ATATGAATATGAATGGTCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
72000470 A
1 A
72000471 GATGCAGGCA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 24 0.34
29 46 0.66
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:72001581 original size:17 final size:18
Alignment explanation
Indices: 72001549--72001582 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72001539 TTTAAGAAGG
72001549 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
72001567 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
72001583 TTCAATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:72004877 original size:17 final size:18
Alignment explanation
Indices: 72004844--72004879 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
72004834 TACAGGCCAG
72004844 AATGGGCTAAATGGGCCC
1 AATGGGCTAAATGGGCCC
*
72004862 AATGGGCT-ATTGGGCCC
1 AATGGGCTAAATGGGCCC
72004879 A
1 A
72004880 TAATAGGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.19
Consensus pattern (18 bp):
AATGGGCTAAATGGGCCC
Found at i:72005046 original size:57 final size:57
Alignment explanation
Indices: 72004945--72005060 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 57
72004935 GAATATGAAT
* * * *
72004945 GTGATTGGTCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAGATACAG
* * * *
72005002 GTGATTTGGGCCTAATGGGCCATATGAATATGA-ATGGGCTTAATGGGCCAGATGCAG
1 GTGA-TTGGGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAGATACAG
72005059 GT
1 GT
72005061 CTGTGAATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
57 26 0.52
58 24 0.48
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28
Consensus pattern (57 bp):
GTGATTGGGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAGATACAG
Found at i:72005048 original size:28 final size:29
Alignment explanation
Indices: 72004937--72005051 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
72004927 GTGAGCATGA
* *
72004937 ATATGAATGTGA-TTGGTCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72004965 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72004994 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
72005023 ATATGAATATGA-ATGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
72005051 A
1 A
72005052 GATGCAGGTC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 27 0.36
29 48 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:72028330 original size:56 final size:56
Alignment explanation
Indices: 72028239--72028406 Score: 225
Period size: 56 Copynumber: 3.0 Consensus size: 56
72028229 TCTTACATGT
** * *
72028239 AATCACATATCGATGCC-ACTGTCCTAGACAG-GGTCTTACTCGTACAAATATATC-A
1 AATCACATATCGATGCCAAC-GTATTAAAC-GTGGTCTTACTCGCACAAATATATCGA
*
72028294 GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACATATATATCGA
1 -AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACAAATATATCGA
* *
72028351 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCACACACATATATCGA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACAAATATATCGA
72028407 TGCCATGGTC
Statistics
Matches: 102, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
55 1 0.01
56 98 0.96
57 3 0.03
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACAAATATATCGA
Found at i:72033326 original size:13 final size:13
Alignment explanation
Indices: 72033308--72033336 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
72033298 AAAATAATTT
72033308 TATTAAACTCACA
1 TATTAAACTCACA
72033321 TATTAAACTCACA
1 TATTAAACTCACA
72033334 TAT
1 TAT
72033337 AACCATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (13 bp):
TATTAAACTCACA
Found at i:72035952 original size:22 final size:22
Alignment explanation
Indices: 72035924--72035981 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
72035914 CACAAAGTCA
*
72035924 ACAGGACGGCTCAACGCCGTAG
1 ACAGGACGGCTCAACACCGTAG
*
72035946 ACAGGACGGCTTAACACCGTAG
1 ACAGGACGGCTCAACACCGTAG
*
72035968 ACAGGACGACTCAA
1 ACAGGACGGCTCAA
72035982 TGTCATAGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.33, C:0.29, G:0.28, T:0.10
Consensus pattern (22 bp):
ACAGGACGGCTCAACACCGTAG
Found at i:72039455 original size:27 final size:27
Alignment explanation
Indices: 72039425--72039481 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
72039415 AAATAATCAA
72039425 AATACCCC-CATAGGGTAAAATGACTGT
1 AATACCCCTC-TAGGGTAAAATGACTGT
72039452 AATACCCCTCTAGGGTAAAATGACTGT
1 AATACCCCTCTAGGGTAAAATGACTGT
72039479 AAT
1 AAT
72039482 TGTAACGCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (27 bp):
AATACCCCTCTAGGGTAAAATGACTGT
Found at i:72039749 original size:24 final size:24
Alignment explanation
Indices: 72039716--72039777 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
72039706 GGAGTGGCTA
*
72039716 GTGGCGTCACATGTGGGG-CCAGAT
1 GTGGCGTCACATGTGGGGCCCA-AG
*
72039740 GTGGCATCACATGTGGGGCCCAAG
1 GTGGCGTCACATGTGGGGCCCAAG
72039764 GTGGCGTCACATGT
1 GTGGCGTCACATGT
72039778 ATGACAAGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 31 0.91
25 3 0.09
ACGTcount: A:0.18, C:0.23, G:0.39, T:0.21
Consensus pattern (24 bp):
GTGGCGTCACATGTGGGGCCCAAG
Found at i:72042490 original size:102 final size:103
Alignment explanation
Indices: 72042310--72042494 Score: 309
Period size: 102 Copynumber: 1.8 Consensus size: 103
72042300 AGGTAAAATG
* *
72042310 ACTGTTTTGCCCTTATGTGTTAAAATGATGATTTTTCCCTTATGTGTTAAAATGACGATTTTGCC
1 ACTGTTTTGCCCTTATGTGTTAAAATGACGATTTTTCCCTTATGTGGTAAAATGACGATTTTGCC
*
72042375 CTTATGTGATAAAATGACAGATTTTCCATTATATGGAA
66 CTTATGAGATAAAATGACAGATTTTCCATTATATGGAA
* *
72042413 ACTGTTTTGCCCTTATGTGTTAAAATGACGA-TTTTGCCTTATGTGGTAAAATTACGATTTTGCC
1 ACTGTTTTGCCCTTATGTGTTAAAATGACGATTTTTCCCTTATGTGGTAAAATGACGATTTTGCC
*
72042477 CTTATGAGGTAAAATGAC
66 CTTATGAGATAAAATGAC
72042495 TATTTTGCCC
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
102 46 0.61
103 30 0.39
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.41
Consensus pattern (103 bp):
ACTGTTTTGCCCTTATGTGTTAAAATGACGATTTTTCCCTTATGTGGTAAAATGACGATTTTGCC
CTTATGAGATAAAATGACAGATTTTCCATTATATGGAA
Done.