Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 221 of 316
Found at i:72391764 original size:6 final size:6
Alignment explanation
Indices: 72391753--72391790 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
72391743 TCCTCTTATC
72391753 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT
72391791 CTCATTTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:72391797 original size:18 final size:18
Alignment explanation
Indices: 72391758--72391797 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
72391748 TTATCTTTTT
* *
72391758 ATTTTTATTTTTATTTTT
1 ATTTTTATTTTTATTCTC
72391776 ATTTTTATTTTTATTCTC
1 ATTTTTATTTTTATTCTC
72391794 ATTT
1 ATTT
72391798 CAATTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (18 bp):
ATTTTTATTTTTATTCTC
Found at i:72395914 original size:54 final size:53
Alignment explanation
Indices: 72395828--72395977 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 53
72395818 AATGTAACCT
* * * *
72395828 TGTGTTTACTGTCCCGACAGACTACCCTGTGTTTA-TCGTCCT-AGTAGACTACTC
1 TGTGTTTACTATCTCGACGGACTACCCCGTGTTTACT-GTCCTGA-TAGACTAC-C
*
72395882 TGTGTTTACTATCTCAACGGACTACCCCGTGTTTACTGTCCTGATAGACTACC
1 TGTGTTTACTATCTCGACGGACTACCCCGTGTTTACTGTCCTGATAGACTACC
* * * * *
72395935 TCGTGTTTACTATATTGATGGACTACCTCGTGTTTACTATCCT
1 T-GTGTTTACTATCTCGACGGACTACCCCGTGTTTACTGTCCT
72395978 TACAAACTAT
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
53 2 0.02
54 78 0.95
55 2 0.02
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.37
Consensus pattern (53 bp):
TGTGTTTACTATCTCGACGGACTACCCCGTGTTTACTGTCCTGATAGACTACC
Found at i:72395931 original size:27 final size:27
Alignment explanation
Indices: 72395829--72395977 Score: 108
Period size: 27 Copynumber: 5.5 Consensus size: 27
72395819 ATGTAACCTT
* * * *
72395829 GTGTTTACTGTCCCGACAGACTACCCT
1 GTGTTTACTATCCTGATAGACTACCCC
* * *
72395856 GTGTTTA-TCGTCCT-AGTAGACTACTCT
1 GTGTTTACT-ATCCTGA-TAGACTACCCC
*
72395883 GTGTTTACTAT-CTCA-ACGGACTACCCC
1 GTGTTTACTATCCTGATA--GACTACCCC
* *
72395910 GTGTTTACTGTCCTGATAGACTACCTC
1 GTGTTTACTATCCTGATAGACTACCCC
** * *
72395937 GTGTTTACTATATTGATGGACTACCTC
1 GTGTTTACTATCCTGATAGACTACCCC
72395964 GTGTTTACTATCCT
1 GTGTTTACTATCCT
72395978 TACAAACTAT
Statistics
Matches: 99, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.01
26 4 0.04
27 89 0.90
28 4 0.04
29 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.37
Consensus pattern (27 bp):
GTGTTTACTATCCTGATAGACTACCCC
Found at i:72396834 original size:22 final size:22
Alignment explanation
Indices: 72396806--72396849 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
72396796 CATGACAAGC
72396806 ATTTATTGGCTAAGCTAAAGAT
1 ATTTATTGGCTAAGCTAAAGAT
*
72396828 ATTTATTGGGTAAGCTAAAGAT
1 ATTTATTGGCTAAGCTAAAGAT
72396850 GTCCAACTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.36
Consensus pattern (22 bp):
ATTTATTGGCTAAGCTAAAGAT
Found at i:72397252 original size:22 final size:23
Alignment explanation
Indices: 72397222--72397264 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
72397212 AACCAGTTCT
*
72397222 ATCCTAACCAAACTATAATTGAA
1 ATCCTAACCAAACTAAAATTGAA
*
72397245 ATCC-AACCAAATTAAAATTG
1 ATCCTAACCAAACTAAAATTG
72397265 GGCCACTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.26
Consensus pattern (23 bp):
ATCCTAACCAAACTAAAATTGAA
Found at i:72399058 original size:20 final size:20
Alignment explanation
Indices: 72399033--72399078 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
72399023 TATTTTTATG
*
72399033 ATGATTAAAAGC-ATATTTAC
1 ATGATT-AAAGCGATAATTAC
*
72399053 ATGATTTAAGCGATAATTAC
1 ATGATTAAAGCGATAATTAC
72399073 ATGATT
1 ATGATT
72399079 TTTATCAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGATTAAAGCGATAATTAC
Found at i:72402671 original size:29 final size:31
Alignment explanation
Indices: 72402638--72402700 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
72402628 CTCTAGACCG
72402638 TGTGTC-ACA-CACG-GTCTACCCCATGGGCA
1 TGTGTCTACACCACGTGT-TACCCCATGGGCA
* *
72402667 TGTGTCTAGACCATGTGTTACCCCATGGGCA
1 TGTGTCTACACCACGTGTTACCCCATGGGCA
72402698 TGT
1 TGT
72402701 TGAATGGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 6 0.21
30 2 0.07
31 19 0.66
32 2 0.07
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.27
Consensus pattern (31 bp):
TGTGTCTACACCACGTGTTACCCCATGGGCA
Found at i:72406170 original size:105 final size:104
Alignment explanation
Indices: 72405984--72406279 Score: 344
Period size: 105 Copynumber: 2.8 Consensus size: 104
72405974 GTGGCAAAGT
* ** * *
72405984 TATGATACGTAGGTATGGTATCAACCATACCAAGCT-TGATAAGTAGGTATGACATCGATCATAC
1 TATGATACGTAGGTATGGTATCATCCATACTGAGCTATGATACGTAGGTATGGCATCG-TCATAC
* * * *
72406048 TGAGCTATGATACGTAGGTATGGCGTCGGCCATACTTAGC
65 TGAGCTATGAAATGTAGGTATGGCATCGGCCATACTGAGC
* *
72406088 TATGATACGTAGGTATGGCATCGTCCATACTGAGCTATGATACGTAGGTATGGCATCGTCAATAC
1 TATGATACGTAGGTATGGTATCATCCATACTGAGCTATGATACGTAGGTATGGCATCGTC-ATAC
* * *
72406153 TGAGCTATGACATGTAGGTATGGCATCGTCCATACTGAGT
65 TGAGCTATGAAATGTAGGTATGGCATCGGCCATACTGAGC
* ** * * * **
72406193 TATGAAACGTAGGTATGGTATTTTCCATACTGAGTTATGAAACGTAGGTATGGTATTTTCCATAC
1 TATGATACGTAGGTATGGTATCATCCATACTGAGCTATGATACGTAGGTATGGCATCGT-CATAC
*
72406258 CGAG-TATGAAATGTAGGTATGG
65 TGAGCTATGAAATGTAGGTATGG
72406280 TATTTCAATG
Statistics
Matches: 165, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
104 50 0.30
105 114 0.69
106 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (104 bp):
TATGATACGTAGGTATGGTATCATCCATACTGAGCTATGATACGTAGGTATGGCATCGTCATACT
GAGCTATGAAATGTAGGTATGGCATCGGCCATACTGAGC
Found at i:72406246 original size:35 final size:35
Alignment explanation
Indices: 72405984--72406279 Score: 312
Period size: 35 Copynumber: 8.5 Consensus size: 35
72405974 GTGGCAAAGT
* * ** **
72405984 TATGATACGTAGGTATGGTATCAACCATACCAAGC
1 TATGAAACGTAGGTATGGCATCGTCCATACTGAGC
*
72406019 T-TGATAA-GTAGGTATGACATCGAT-CATACTGAGC
1 TATGA-AACGTAGGTATGGCATCG-TCCATACTGAGC
* * * *
72406053 TATGATACGTAGGTATGGCGTCGGCCATACTTAGC
1 TATGAAACGTAGGTATGGCATCGTCCATACTGAGC
*
72406088 TATGATACGTAGGTATGGCATCGTCCATACTGAGC
1 TATGAAACGTAGGTATGGCATCGTCCATACTGAGC
* *
72406123 TATGATACGTAGGTATGGCATCGTCAATACTGAGC
1 TATGAAACGTAGGTATGGCATCGTCCATACTGAGC
* * *
72406158 TATGACATGTAGGTATGGCATCGTCCATACTGAGT
1 TATGAAACGTAGGTATGGCATCGTCCATACTGAGC
* ** *
72406193 TATGAAACGTAGGTATGGTATTTTCCATACTGAGT
1 TATGAAACGTAGGTATGGCATCGTCCATACTGAGC
* ** *
72406228 TATGAAACGTAGGTATGGTATTTTCCATACCGAG-
1 TATGAAACGTAGGTATGGCATCGTCCATACTGAGC
*
72406262 TATGAAATGTAGGTATGG
1 TATGAAACGTAGGTATGG
72406280 TATTTCAATG
Statistics
Matches: 229, Mismatches: 27, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
34 42 0.18
35 187 0.82
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (35 bp):
TATGAAACGTAGGTATGGCATCGTCCATACTGAGC
Found at i:72407634 original size:46 final size:46
Alignment explanation
Indices: 72407567--72407879 Score: 212
Period size: 49 Copynumber: 6.7 Consensus size: 46
72407557 ATTGCGTGGC
*
72407567 ATGTGAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACATT-
1 ATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTG
*
72407613 ATGTGAGCCAGTGTAAGACATGTCTAGGACATGCATCGG--CATTG
1 ATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTG
* **
72407657 A-GACTAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-GGG
1 ATG--T-GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTG
* * * * * *
72407705 ATATACAAGCTAGTGTAATACTTGTCTGGGACATGGCATCAG--C-TTG
1 ATGT--GAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCCATTG
* * * * * * *
72407751 TTGTGTGTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAG
1 ATGTGAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CC-ATTG
* *
72407800 ATGAGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATAT-
1 ATGTGAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCC-C-AT-TG
** * *
72407849 ATGAAAGTCAGTGTAAGACCTGTCTGGGACA
1 ATGTGAGCCAGTGTAAGACATGTCTGGGACA
72407880 CGGCATTGAC
Statistics
Matches: 215, Mismatches: 35, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
43 5 0.02
44 28 0.13
45 1 0.00
46 74 0.34
47 2 0.01
48 28 0.13
49 77 0.36
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
ATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTG
Found at i:72407821 original size:49 final size:49
Alignment explanation
Indices: 72407572--72407935 Score: 206
Period size: 49 Copynumber: 7.7 Consensus size: 49
72407562 GTGGCATGTG
* * * * * **
72407572 AGCCAGTGTAAGACATGTTTGGGACAT-GCATCGGCCAC-AT-TATGTG
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAA
* * * * * *
72407618 AGCCAGTGTAAGACATGTCTAGGACAT-GCATCGGCATTG--AGACT-AG
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGA-TGAA
* * * ** *
72407664 AGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGGGATAT-ACA
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA-A
* * * * * *
72407712 AGCTAGTGTAATACTTGTCTGGGACATGGCATC-AGCTTG-TTG-TG--
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAA
* * * *
72407756 TGTCAGTGTAAGACCTGTTTGGGACATGGCATCGACAC-CGATAGATGAG
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAA
* *
72407805 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAA
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAA
* * * * * *
72407854 AGTCAGTGTAAGACCTGTCTGGGACACGGCATTGACTTTGAT-G-T-ACT
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA-A
* *
72407901 AGCCAGTGTAAAACCATGTCTAGGACATGGCATCG
1 AGCCAGTGTAAGACC-TGTCTGGGACATGGCATCG
72407936 GCATCTTATC
Statistics
Matches: 252, Mismatches: 49, Indels: 32
0.76 0.15 0.10
Matches are distributed among these distances:
44 27 0.11
45 2 0.01
46 75 0.30
47 19 0.08
48 47 0.19
49 82 0.33
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (49 bp):
AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAA
Found at i:72407885 original size:98 final size:97
Alignment explanation
Indices: 72407757--72407937 Score: 240
Period size: 98 Copynumber: 1.9 Consensus size: 97
72407747 CTTGTTGTGT
* * *
72407757 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGA-GAGCCAGTGTAAGACC-
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGACACCGAT-G-T-ACGAGCCAGTGTAAAACCA
*
72407820 TGTCTGGGACATGGCATCGGCCTCGATATATGAAA
63 TGTCTAGGACATGGCATCGGCCTCGATATATGAAA
* *** *
72407855 GTCAGTGTAAGACCTGTCTGGGACACGGCATTGACTTTGATGTACTAGCCAGTGTAAAACCATGT
1 GTCAGTGTAAGACCTGTCTGGGACACGGCATCGACACCGATGTACGAGCCAGTGTAAAACCATGT
72407920 CTAGGACATGGCATCGGC
66 CTAGGACATGGCATCGGC
72407938 ATCTTATCCC
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
95 1 0.01
96 15 0.21
97 21 0.29
98 35 0.49
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (97 bp):
GTCAGTGTAAGACCTGTCTGGGACACGGCATCGACACCGATGTACGAGCCAGTGTAAAACCATGT
CTAGGACATGGCATCGGCCTCGATATATGAAA
Found at i:72413569 original size:40 final size:40
Alignment explanation
Indices: 72413537--72413688 Score: 254
Period size: 40 Copynumber: 3.8 Consensus size: 40
72413527 GGATATAGCT
* *
72413537 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGGTA
72413577 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAGTT-GGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTAGGTA
72413617 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA-GTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATTAGGTA
72413657 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
72413689 TTATCATCCG
Statistics
Matches: 108, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
40 105 0.97
41 3 0.03
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGGTA
Found at i:72418004 original size:42 final size:43
Alignment explanation
Indices: 72417953--72418038 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
72417943 TTTAGAGACA
72417953 AAATTGAATAAAGTGC-AAACTTGCATTCTAGAAGTTTTAAGC
1 AAATTGAATAAAGTGCAAAACTTGCATTCTAGAAGTTTTAAGC
72417995 AAATTGAATAAAGTGCAAAACTTGCATTCTAGAAGTTTTAAGC
1 AAATTGAATAAAGTGCAAAACTTGCATTCTAGAAGTTTTAAGC
72418038 A
1 A
72418039 TGAAATTGCA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 16 0.37
43 27 0.63
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (43 bp):
AAATTGAATAAAGTGCAAAACTTGCATTCTAGAAGTTTTAAGC
Found at i:72418681 original size:30 final size:30
Alignment explanation
Indices: 72418636--72418696 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
72418626 TCATTTTACG
72418636 AGTTTAAGGGCCAAAGTGAAAATATGTGAA
1 AGTTTAAGGGCCAAAGTGAAAATATGTGAA
* *
72418666 AGTTTAGGGGTCAAAGTGAAAATATGTGAA
1 AGTTTAAGGGCCAAAGTGAAAATATGTGAA
72418696 A
1 A
72418697 ATATGGTAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.43, C:0.05, G:0.28, T:0.25
Consensus pattern (30 bp):
AGTTTAAGGGCCAAAGTGAAAATATGTGAA
Found at i:72429582 original size:40 final size:40
Alignment explanation
Indices: 72429527--72429784 Score: 403
Period size: 40 Copynumber: 6.5 Consensus size: 40
72429517 TGGATGATAA
*
72429527 CCGGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72429567 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72429607 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72429647 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72429687 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
72429727 CCGGGCTATGTCCCAAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
72429767 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72429785 TACTTGGCTT
Statistics
Matches: 203, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 14 0.07
40 189 0.93
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72432017 original size:27 final size:27
Alignment explanation
Indices: 72431983--72432128 Score: 175
Period size: 27 Copynumber: 5.4 Consensus size: 27
72431973 TGGATAAGTT
*
72431983 GTAGAATTACTGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
72432010 GTAGAATTACTAAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
72432037 GTATAATTATTGAAAATACCCCTATAGG
1 GTAGAATTACTG-AAATACCCCTGTAGG
**
72432065 GTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * * *
72432092 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
72432119 GTAAAATTAC
1 GTAGAATTAC
72432129 CATTTTGCCC
Statistics
Matches: 102, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
27 80 0.78
28 22 0.22
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:72432070 original size:55 final size:54
Alignment explanation
Indices: 72431983--72432111 Score: 186
Period size: 55 Copynumber: 2.4 Consensus size: 54
72431973 TGGATAAGTT
* *
72431983 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGG
* * *
72432037 GTATAATTATTGAAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACTG-AAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGG
* *
72432092 GTAGAATTACCGAGATACCC
1 GTAGAATTACTGAAATACCC
72432112 TTGTGGGGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
54 17 0.26
55 48 0.74
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGG
Found at i:72432825 original size:27 final size:26
Alignment explanation
Indices: 72432781--72432832 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72432771 CTCGCTGCAA
*
72432781 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
72432808 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
72432833 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:72435824 original size:15 final size:15
Alignment explanation
Indices: 72435806--72435838 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
72435796 AAAAGTAGTT
72435806 TAAAAAAGATAAAAA
1 TAAAAAAGATAAAAA
72435821 TAAAAAAGATAAAAA
1 TAAAAAAGATAAAAA
72435836 TAA
1 TAA
72435839 TAAATAACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (15 bp):
TAAAAAAGATAAAAA
Found at i:72446079 original size:20 final size:18
Alignment explanation
Indices: 72446055--72446103 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
72446045 ATAGTATTTT
72446055 TATTAATTTAATATTAAA
1 TATTAATTTAATATTAAA
72446073 GTGATT-ATCTTAATATTAAA
1 -T-ATTAAT-TTAATATTAAA
72446093 T-TTAATTTAAT
1 TATTAATTTAAT
72446104 GTTTATCTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 7 0.26
18 2 0.07
19 4 0.15
20 14 0.52
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (18 bp):
TATTAATTTAATATTAAA
Found at i:72450188 original size:43 final size:43
Alignment explanation
Indices: 72450140--72450296 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
72450130 AGCTCGTACA
* *
72450140 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * ** *
72450183 ATGCCACTGTCGCAGACCGGGTCTTACATAG-AATCAAATA-CA
1 ATGCCAATGTCCCAGACATGGTCTTACAT-GTAATCAAATATCG
* *
72450225 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCTCAA-ATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGT-AATC-AAATATCG
*
72450269 ATGCCAATGTCCCAAACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
72450297 CAAAATCACA
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 24 0.26
43 39 0.41
44 30 0.32
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATATCG
Found at i:72462032 original size:174 final size:174
Alignment explanation
Indices: 72461742--72462103 Score: 535
Period size: 174 Copynumber: 2.1 Consensus size: 174
72461732 GAGACATGCT
** * * *
72461742 CGTGTGTCTAGGCTGTGGCAAAATAGGGCATACATACTGAGTTGTCCACACGGCTACAAGACATG
1 CGTGTGTCTAGGCCATGGCAAAATAGGGCATACATACTGACTTGTCCACACGGCCACAAGACACG
* *
72461807 CCCGTGTGCCAGGCCGTGTGAAAATTAGAGAGGCTACTGACTTAGATCACACGGTCGACGACACG
66 CCCGTGTACCAGGCCGTGTGAAAATTAGAGAGGCTACTGACTTAGATCACACGGTCGACCACACG
** * *
72461872 CCCATGTGCCAACCTGTGTGCCACCCAAGACCTATAGACACACC
131 CCCATGTGCCAACCCATGTGCCACACAAGACCGATAGACACACC
* *
72461916 CGTGTGTCTAGGCCATGGCAAAATAGGGCATACATACTGACTTGTCCACATGGCCATAAGACACG
1 CGTGTGTCTAGGCCATGGCAAAATAGGGCATACATACTGACTTGTCCACACGGCCACAAGACACG
* * *
72461981 CCCGTGTACCATGCCGTGTGGAAATTAGGGAGGCTACTGACTTAGATCACACGGTCGACCACACG
66 CCCGTGTACCAGGCCGTGTGAAAATTAGAGAGGCTACTGACTTAGATCACACGGTCGACCACACG
* * * *
72462046 CCCATGTGCCAGCCCATGTGCGACACACGACCGATAGACACATC
131 CCCATGTGCCAACCCATGTGCCACACAAGACCGATAGACACACC
*
72462090 CGTATGTCTAGGCC
1 CGTGTGTCTAGGCC
72462104 GTATCAAAAC
Statistics
Matches: 167, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
174 167 1.00
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.20
Consensus pattern (174 bp):
CGTGTGTCTAGGCCATGGCAAAATAGGGCATACATACTGACTTGTCCACACGGCCACAAGACACG
CCCGTGTACCAGGCCGTGTGAAAATTAGAGAGGCTACTGACTTAGATCACACGGTCGACCACACG
CCCATGTGCCAACCCATGTGCCACACAAGACCGATAGACACACC
Found at i:72463276 original size:43 final size:43
Alignment explanation
Indices: 72463156--72463313 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
72463146 AGCTCGTACA
** * *
72463156 ATGCCAATGTCCCAGATGTGGTCTTACATGT-AATCAAATATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATA-CG
* * * *
72463199 ATGCCACTGTTCCAGATAAT-GTCTTACAC-AAAATCAAATACG
1 ATGCCAATGTCCCAGA-CATGGTCTTACACGTAAATCAAATACG
*
72463241 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAA--TCAAATACG
* *
72463285 ATACCAATGTCCCAGACGTGGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
72463314 AAAATCACAT
Statistics
Matches: 94, Mismatches: 15, Indels: 11
0.78 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 23 0.24
43 34 0.36
44 29 0.31
45 6 0.06
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATACG
Found at i:72463688 original size:14 final size:14
Alignment explanation
Indices: 72463669--72463697 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
72463659 ACACATATTT
72463669 AGAGCATTTTACAA
1 AGAGCATTTTACAA
72463683 AGAGCATTTTACAA
1 AGAGCATTTTACAA
72463697 A
1 A
72463698 CTAACCCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.28
Consensus pattern (14 bp):
AGAGCATTTTACAA
Found at i:72474678 original size:19 final size:19
Alignment explanation
Indices: 72474654--72474694 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
72474644 GTAGATCTAC
72474654 AAGAAGAAGAGAATATG-GA
1 AAGAAGAAGAGAA-ATGTGA
72474673 AAGAAGAAGAGAAATGTGA
1 AAGAAGAAGAGAAATGTGA
72474692 AAG
1 AAG
72474695 GGAAAGTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.59, C:0.00, G:0.32, T:0.10
Consensus pattern (19 bp):
AAGAAGAAGAGAAATGTGA
Found at i:72477495 original size:28 final size:27
Alignment explanation
Indices: 72477438--72477590 Score: 243
Period size: 27 Copynumber: 5.6 Consensus size: 27
72477428 TAAATTGTGC
*
72477438 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72477465 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
72477493 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
72477520 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
72477548 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
72477575 AGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGA
72477591 CGCTATTGAG
Statistics
Matches: 120, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 67 0.56
28 53 0.44
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:72477502 original size:55 final size:55
Alignment explanation
Indices: 72477438--72477590 Score: 261
Period size: 55 Copynumber: 2.8 Consensus size: 55
72477428 TAAATTGTGC
*
72477438 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
72477493 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
72477548 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA
72477591 CGCTATTGAG
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 93 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:72485589 original size:28 final size:28
Alignment explanation
Indices: 72485532--72485660 Score: 226
Period size: 28 Copynumber: 4.7 Consensus size: 28
72485522 TAAATTGTGC
*
72485532 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
72485559 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
72485587 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
72485614 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
72485642 AGCACTAAGTGTGCGAGTT
1 AGCACTAAGTGTGCGAGTT
72485661 GATTAATAGC
Statistics
Matches: 98, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
27 43 0.44
28 55 0.56
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:72485596 original size:55 final size:55
Alignment explanation
Indices: 72485532--72485662 Score: 244
Period size: 55 Copynumber: 2.4 Consensus size: 55
72485522 TAAATTGTGC
*
72485532 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
72485587 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
72485642 AGCACTAAGTGTGCGAGTTGA
1 AGCACTAAGTGTGCGAGTTGA
72485663 TTAATAGCAN
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 74 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:72495814 original size:39 final size:40
Alignment explanation
Indices: 72495771--72495922 Score: 236
Period size: 40 Copynumber: 3.9 Consensus size: 40
72495761 TTACTAAATT
*
72495771 CGGGCTAAGT-CCGAAGAGCATTCATGCTAGCGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
72495810 CGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
72495849 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * * *
72495889 CGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
72495923 CGTGTATTCG
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 48 0.45
40 58 0.55
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
Found at i:72495831 original size:79 final size:79
Alignment explanation
Indices: 72495726--72495916 Score: 224
Period size: 79 Copynumber: 2.4 Consensus size: 79
72495716 CTAAGTGACC
* ** * *
72495726 ATATCCGGACTAAGATCCGAAG-GCATTGGTGCAAGTTACTAAATTCGGGCTAAGT-CCGAAGAG
1 ATATCCGGGCTAAG-TCCGAAGAGCATTCATGCAAGTGA-TAAATCCGGGCTAAGTCCCGAAGAG
72495789 CATTCATGCTAGCGAT
64 CATTCATGCTAGCGAT
* * **
72495805 GTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 ATATCCGGGCTAAGTCCGAAGAGCATTCATGCAAGTGATAAATCCGGGCTAAGTCCCGAAGAGCA
*
72495870 TTCATGCTAGTGAT
66 TTCATGCTAGCGAT
* * *
72495884 ATATCCGTGCTAAATCCCGAAGAGCAATCATGC
1 ATATCCGGGCTAAGT-CCGAAGAGCATTCATGC
72495917 TGGTGACGTG
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
78 20 0.21
79 59 0.62
80 16 0.17
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCGAAGAGCATTCATGCAAGTGATAAATCCGGGCTAAGTCCCGAAGAGCA
TTCATGCTAGCGAT
Found at i:72496114 original size:25 final size:25
Alignment explanation
Indices: 72496085--72496136 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
72496075 TGTGTATTAA
72496085 TGAATGAATAAGA-GCACTATGTATG
1 TGAAT-AATAAGAGGCACTATGTATG
* * *
72496110 TGAATAATTAGAGGCACTGTGTGTG
1 TGAATAATAAGAGGCACTATGTATG
72496135 TG
1 TG
72496137 TGAATTCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (25 bp):
TGAATAATAAGAGGCACTATGTATG
Found at i:72499679 original size:47 final size:47
Alignment explanation
Indices: 72499613--72500133 Score: 862
Period size: 47 Copynumber: 11.1 Consensus size: 47
72499603 GAAATGATAG
72499613 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
72499660 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
72499707 TAAGGCCTAATAGCCGATGTGATGAATGTGAAATTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
72499754 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
72499801 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
72499848 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
72499895 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
72499942 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
72499989 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
72500036 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
72500083 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
72500130 TAAG
1 TAAG
72500134 TCCCGAAGGG
Statistics
Matches: 447, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 447 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:72500308 original size:37 final size:37
Alignment explanation
Indices: 72500252--72500330 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
72500242 CCGAGCTCTA
* *
72500252 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
72500289 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
72500326 AAGAC
1 AAGAC
72500331 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:72506891 original size:57 final size:57
Alignment explanation
Indices: 72506803--72506920 Score: 236
Period size: 57 Copynumber: 2.1 Consensus size: 57
72506793 GCTTAATTAC
72506803 GTCAAGTTTATGAAGGATATCTTGTCTAAGAAGAAATGACTTAGTGAATATGAAACT
1 GTCAAGTTTATGAAGGATATCTTGTCTAAGAAGAAATGACTTAGTGAATATGAAACT
72506860 GTCAAGTTTATGAAGGATATCTTGTCTAAGAAGAAATGACTTAGTGAATATGAAACT
1 GTCAAGTTTATGAAGGATATCTTGTCTAAGAAGAAATGACTTAGTGAATATGAAACT
72506917 GTCA
1 GTCA
72506921 CTTTGACGAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.31
Consensus pattern (57 bp):
GTCAAGTTTATGAAGGATATCTTGTCTAAGAAGAAATGACTTAGTGAATATGAAACT
Found at i:72513672 original size:13 final size:13
Alignment explanation
Indices: 72513639--72513678 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
72513629 TATCTTTGTC
72513639 TTTAATTTTAAT-
1 TTTAATTTTAATA
72513651 TTTAATTTTAATA
1 TTTAATTTTAATA
*
72513664 TTTATTTTTAATA
1 TTTAATTTTAATA
72513677 TT
1 TT
72513679 AATGTTAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 12 0.46
13 14 0.54
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTAATTTTAATA
Found at i:72513680 original size:6 final size:6
Alignment explanation
Indices: 72513639--72513702 Score: 62
Period size: 6 Copynumber: 11.0 Consensus size: 6
72513629 TATCTTTGTC
* * * *
72513639 TTTAAT TTTAAT TTTAAT TTTAAT ATTTATT TTTAAT ATTAAT GTTAGT
1 TTTAAT TTTAAT TTTAAT TTTAAT -TTTAAT TTTAAT TTTAAT TTTAAT
72513688 TTT-A- TTT-AT TTTAAT
1 TTTAAT TTTAAT TTTAAT
72513703 AAAGGGGGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
4 4 0.08
5 3 0.06
6 36 0.75
7 5 0.10
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (6 bp):
TTTAAT
Found at i:72513690 original size:19 final size:19
Alignment explanation
Indices: 72513650--72513691 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
72513640 TTAATTTTAA
* *
72513650 TTTTAATTTTAATATTTAT
1 TTTTAATATTAATAGTTAT
*
72513669 TTTTAATATTAAT-GTTAG
1 TTTTAATATTAATAGTTAT
72513687 TTTTA
1 TTTTA
72513692 TTTATTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (19 bp):
TTTTAATATTAATAGTTAT
Found at i:72518631 original size:42 final size:42
Alignment explanation
Indices: 72518577--72518697 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 42
72518567 TATGATTACT
* * *
72518577 GAGATTACGTGTAAGACAATATCTAGGATATGGCATCGATAT
1 GAGATTACGTGTAAGACCATATCTAGGATATGGCATCAATAA
* * *
72518619 GAGGCTT-CGTGTAAGACCATAACTAGGTTATTGGCATCAATAA
1 GA-GATTACGTGTAAGACCATATCTAGGATA-TGGCATCAATAA
* **
72518662 GAGATTACATGTAAGACCATATCCGGGATATGGCAT
1 GAGATTACGTGTAAGACCATATCTAGGATATGGCAT
72518698 TGGTACGGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 31 0.48
43 33 0.52
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTAGGATATGGCATCAATAA
Found at i:72523998 original size:40 final size:40
Alignment explanation
Indices: 72523924--72524145 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
72523914 AACCCAAGTA
* *
72523924 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
72523963 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
72524003 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
72524043 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
72524083 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
72524123 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72524146 CATTCGAATA
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.07
40 155 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:72534590 original size:43 final size:43
Alignment explanation
Indices: 72534534--72534737 Score: 196
Period size: 43 Copynumber: 4.8 Consensus size: 43
72534524 TATGTGATAT
* * *
72534534 TTACATGTAAGACCATGTTTGGGACGCTGGCATCGATATGTGA
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGA
** * * * *
72534577 TTTTGTGTAAGACCACGTCTAGGATGTTGGCATTGATATGTGA
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGA
* * * *
72534620 TTACGTGTAAGACCACGTCTGGGA-ATTTGCATCGATATGTGT
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGA
* * * * * *
72534662 TTATGAGTAAGACCCTATCTGGGACAG-TGGCATCGATATGAGG
1 TTACGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATGTGA
* *
72534705 TTACATGTAAGACCATGTCTAGGACGTTGGCAT
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCAT
72534738 TGTACGATAT
Statistics
Matches: 127, Mismatches: 31, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
42 34 0.27
43 93 0.73
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACGTTGGCATCGATATGTGA
Found at i:72540095 original size:27 final size:27
Alignment explanation
Indices: 72540067--72540210 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
72540057 TACTGAAATG
* * *
72540067 CCCTCGATTTGTAGAATTACCATTTTG
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
72540094 CCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
72540121 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
72540148 CCCTTGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
72540175 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
72540202 CCCTCGATT
1 CCCTCGATT
72540211 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 96 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.10, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:72540139 original size:54 final size:54
Alignment explanation
Indices: 72540067--72540210 Score: 191
Period size: 54 Copynumber: 2.7 Consensus size: 54
72540057 TACTGAAATG
** * * * * *
72540067 CCCTCGATTTGTAGAATTACCATTTTGCCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTCA
* *
72540121 CCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTCA
72540175 CCCTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATT
72540211 GTGAAATTAC
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 78 0.99
ACGTcount: A:0.26, C:0.24, G:0.10, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTCA
Found at i:72540232 original size:27 final size:27
Alignment explanation
Indices: 72540202--72540367 Score: 140
Period size: 27 Copynumber: 6.1 Consensus size: 27
72540192 TACCGTTTTA
* **
72540202 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCTCGATTGTAAAATTACCAAAATAC
* *
72540229 CCCT--ATAGGATAGAATTACCAAAATAC
1 CCCTCGAT-TG-TAAAATTACCAAAATAC
* *
72540256 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTCGATTGTAAAATTACCAAAATAC
* * *
72540283 CCCTGGTTTGTAAAATTACCGAAATAC
1 CCCTCGATTGTAAAATTACCAAAATAC
* * * * *
72540310 CACTGGTTTGTGAAATTACCGAAATA-
1 CCCTCGATTGTAAAATTACCAAAATAC
*
72540336 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTCGA-TTGTAAAATTACCAAAATAC
72540364 CCCT
1 CCCT
72540368 AATTTACAAA
Statistics
Matches: 115, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
25 2 0.02
26 4 0.03
27 103 0.90
28 5 0.04
29 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.28
Consensus pattern (27 bp):
CCCTCGATTGTAAAATTACCAAAATAC
Found at i:72540283 original size:54 final size:53
Alignment explanation
Indices: 72540209--72540368 Score: 194
Period size: 54 Copynumber: 3.0 Consensus size: 53
72540199 TTACCCTCGA
* ** *
72540209 TTGTGAAATTACTGAAATACCCCTATAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTATTTG-TAAAATTACCAAAATACCCCTAGT
* * * * * *
72540263 TTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCT-ATTTGTAAAATTACCAAAATACCCCTAGT
*
72540317 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTA
1 TTGTGAAATTACCGAAATACCC-CTATTTGTAAAATTACCAAAATACCCCTA
72540369 ATTTACAAAA
Statistics
Matches: 87, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
54 84 0.97
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (53 bp):
TTGTGAAATTACCGAAATACCCCTATTTGTAAAATTACCAAAATACCCCTAGT
Found at i:72540381 original size:27 final size:27
Alignment explanation
Indices: 72540242--72540368 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
72540232 TATAGGATAG
72540242 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
72540269 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
72540296 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
72540323 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
72540350 AATTACCAAAATACCCCTA
1 AATTACCAAAATACCCCTA
72540369 ATTTACAAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.03
27 82 0.92
28 4 0.04
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:72540387 original size:27 final size:27
Alignment explanation
Indices: 72540322--72540389 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
72540312 CTGGTTTGTG
** **
72540322 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACAAAAATACCCTCAATTTACA
*
72540349 AAATTACCAAAATACCC-CTAATTTACA
1 AAATTACAAAAATACCCTC-AATTTACA
*
72540376 AAATTATAAAAATA
1 AAATTACAAAAATA
72540390 TCCTTGACTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.03
27 34 0.97
ACGTcount: A:0.50, C:0.19, G:0.03, T:0.28
Consensus pattern (27 bp):
AAATTACAAAAATACCCTCAATTTACA
Found at i:72540443 original size:27 final size:27
Alignment explanation
Indices: 72540370--72540455 Score: 79
Period size: 27 Copynumber: 3.1 Consensus size: 27
72540360 ATACCCCTAA
* *
72540370 TTTACAAAATTATAAAAATATCC-TTGAC
1 TTTACAAAATTATAGAAATA-CCATTG-G
72540398 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCATTGG
*
72540426 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCATTGG
72540453 TTT
1 TTT
72540456 GTAGATTTAC
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
27 23 0.46
28 9 0.18
29 18 0.36
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:72540458 original size:110 final size:108
Alignment explanation
Indices: 72540242--72540449 Score: 254
Period size: 108 Copynumber: 1.9 Consensus size: 108
72540232 TATAGGATAG
* ** * * * *
72540242 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCCTAATTTACAAAATTACAAAAATACCCCTGCTTTCTAAAATTACAGAAA
***
72540307 TACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
66 TACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
* * * *
72540350 AATTACCAAAATACCCCTAATTTACAAAATTATAAAAATATCCTTGACTTTCTAAAAATTATAGA
1 AATTACCAAAATACCCCTAATTTACAAAATTACAAAAATACCCCTG-CTTTCT-AAAATTACAGA
* *
72540415 AATACCATTGGTTTACAAAATTACTGAAATACCCT
64 AATACCACTGGTTTACAAAATTACCGAAATACCCT
72540450 TGGTTTGTAG
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
108 39 0.48
109 4 0.05
110 39 0.48
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (108 bp):
AATTACCAAAATACCCCTAATTTACAAAATTACAAAAATACCCCTGCTTTCTAAAATTACAGAAA
TACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
Found at i:72540466 original size:110 final size:108
Alignment explanation
Indices: 72540239--72540475 Score: 258
Period size: 110 Copynumber: 2.2 Consensus size: 108
72540229 CCCTATAGGA
* ** * * * *
72540239 TAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCG
1 TAGAATTACCAAAATACCCCTAATTTACAAAATTACAAAAATACCCCTGCTTTCTAAAATTACAG
***
72540304 AAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTG
66 AAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
* * * * *
72540347 TAAAATTACCAAAATACCCCTAATTTACAAAATTATAAAAATATCCTTGACTTTCTAAAAATTAT
1 TAGAATTACCAAAATACCCCTAATTTACAAAATTACAAAAATACCCCTG-CTTTCT-AAAATTAC
* * ***
72540412 AGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTG
64 AGAAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
* *
72540457 TAGATTTACCAAAACACCC
1 TAGAATTACCAAAATACCC
72540476 TTGTAGGATG
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
108 41 0.39
109 4 0.04
110 59 0.57
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (108 bp):
TAGAATTACCAAAATACCCCTAATTTACAAAATTACAAAAATACCCCTGCTTTCTAAAATTACAG
AAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTG
Found at i:72540573 original size:27 final size:27
Alignment explanation
Indices: 72540509--72540573 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
72540499 ACCCCAAATA
*
72540509 GGTAAAAAGACCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCTTGTAG
* * *
72540536 GGTAAAGTGACTGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCTTGTAG
72540563 GGTAAAATGAC
1 GGTAAAATGAC
72540574 GAATACGATC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCTTGTAG
Found at i:72541465 original size:24 final size:24
Alignment explanation
Indices: 72541382--72541465 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
72541372 GAGGAAATGC
* *
72541382 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
72541407 AAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
72541431 TAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
72541455 TAAAAGAGGCT
1 TAAAAG-GGCT
72541466 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 4 0.08
24 11 0.21
25 38 0.72
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:72541475 original size:25 final size:24
Alignment explanation
Indices: 72541409--72541479 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
72541399 AGTTTACCAA
**
72541409 AAAGGGCTTTGCCCCAGTTTATTAG
1 AAAGGGCTAGGCCCCAG-TTATTAG
**
72541434 AAAGGGCTTTGCCCCAGTTATTA-
1 AAAGGGCTAGGCCCCAGTTATTAG
72541457 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAG-GGCTAGGCC-CCAGTTAT
72541480 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.10
24 13 0.31
25 25 0.60
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAGGGCTAGGCCCCAGTTATTAG
Found at i:72541665 original size:42 final size:42
Alignment explanation
Indices: 72541600--72541733 Score: 241
Period size: 42 Copynumber: 3.2 Consensus size: 42
72541590 TAGTCTCCCC
*
72541600 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
* *
72541642 AAATGGGCTTGCACACATCCATTGACATTATATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
72541684 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
72541726 AAATGGGC
1 AAATGGGC
72541734 CTAAGGGCCA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:72541792 original size:31 final size:31
Alignment explanation
Indices: 72541757--72541840 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
72541747 CGTTTACAGT
72541757 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
72541788 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
72541819 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
72541841 TCAAGACTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:72544376 original size:44 final size:44
Alignment explanation
Indices: 72544311--72544394 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
72544301 TTGATATCTC
* *
72544311 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGATAGA
1 AAAGACCATGGTTGTAACATGGCAATTAAGGAAGAATTGATAGA
* *
72544355 AAAGACCAT-GTTGATAACATGGCATTTAAGGACGAATTGA
1 AAAGACCATGGTTG-TAACATGGCAATTAAGGAAGAATTGA
72544395 CAGTTATGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 4 0.11
44 31 0.89
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (44 bp):
AAAGACCATGGTTGTAACATGGCAATTAAGGAAGAATTGATAGA
Found at i:72544594 original size:47 final size:47
Alignment explanation
Indices: 72544535--72544654 Score: 195
Period size: 47 Copynumber: 2.6 Consensus size: 47
72544525 ATTGGCACTT
*
72544535 AGACAAGGATACCATGTAAGACCATGTTTGGAACATGGTATTTAGTA
1 AGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTAGTA
* *
72544582 AGACAAGGATACCATGTAAGACTATGTTTGGAACATGGCATTTGGTA
1 AGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTAGTA
* *
72544629 AGATAAGGATATCATGTAAGACCATG
1 AGACAAGGATACCATGTAAGACCATG
72544655 CCAAGGCATG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (47 bp):
AGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTAGTA
Found at i:72544691 original size:54 final size:54
Alignment explanation
Indices: 72544627--72544839 Score: 178
Period size: 54 Copynumber: 3.9 Consensus size: 54
72544617 TGGCATTTGG
* * *
72544627 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTTA
* * * * ** *
72544681 TAAGGTAAGGAAATCATGTAAGACCATGTCAAGACATGGTATTGACGAGTTACTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-TTA
* * * * * * *
72544736 TAAGGCAAAGG-TCCCATGTAAAACCATGCCAAGGCATGGCATTGGTGAG-TTCA
1 TAAGG-TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTTA
* * ** * * *
72544789 TAAGGCAAGGCTACCACATAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT
72544840 CAAAAAGGAA
Statistics
Matches: 126, Mismatches: 29, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
52 4 0.03
53 36 0.29
54 46 0.37
55 36 0.29
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTTA
Found at i:72544762 original size:55 final size:53
Alignment explanation
Indices: 72544641--72544829 Score: 173
Period size: 55 Copynumber: 3.5 Consensus size: 53
72544631 ATAAGGATAT
* * ** * * ** *
72544641 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGTAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGACGAG-TTCATAAGGCAAGGCTAC
* *
72544695 CATGTAAGACCATGTCAAGACATGGTATTGACGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGTCAAGACATGGCATTGACGAGTT-C-ATAAGGC-AAGGCTAC
* * * **
72544750 CATGTAAAACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGCTAC
1 CATGTAAGACCATGTCAAGACATGGCATTGACGAGTTCATAAGGCAAGGCTAC
**
72544803 CACATAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGTCAAGACATGGCA
72544830 ATGGTAAGTT
Statistics
Matches: 109, Mismatches: 22, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
52 4 0.04
53 33 0.30
54 31 0.28
55 37 0.34
56 4 0.04
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCATTGACGAGTTCATAAGGCAAGGCTAC
Found at i:72544827 original size:53 final size:52
Alignment explanation
Indices: 72544641--72544841 Score: 177
Period size: 53 Copynumber: 3.8 Consensus size: 52
72544631 ATAAGGATAT
* * * * *
72544641 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGTAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAG-TTCATAAGGCAAGG-TAC
* * ** *
72544695 CATGTAAGACCATGTCAAGACATGGTATTGACGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-C-ATAAGGC-AAGGTAC
* * * *
72544750 CATGTAAAACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGCTAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGCAAGG-TAC
** * * *
72544803 CACATAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCA
72544842 AAAAGGAAAA
Statistics
Matches: 119, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
52 4 0.03
53 43 0.36
54 31 0.26
55 37 0.31
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (52 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGCAAGGTAC
Found at i:72545280 original size:51 final size:51
Alignment explanation
Indices: 72545217--72545319 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
72545207 AGCTAAATTG
72545217 ATTGCTAATGCTTATTATTTTACATGTGAACTTACTAAGTTTTATAAGCTT
1 ATTGCTAATGCTTATTATTTTACATGTGAACTTACTAAGTTTTATAAGCTT
72545268 ATTGCTAATGCTTATTATTTTACATGTGAACTTACTAAGTTTTATAAGCTT
1 ATTGCTAATGCTTATTATTTTACATGTGAACTTACTAAGTTTTATAAGCTT
72545319 A
1 A
72545320 CTTCTTTCAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.47
Consensus pattern (51 bp):
ATTGCTAATGCTTATTATTTTACATGTGAACTTACTAAGTTTTATAAGCTT
Found at i:72548596 original size:27 final size:28
Alignment explanation
Indices: 72548512--72548609 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
72548502 CATGAGATTG
* * * *
72548512 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
72548541 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72548569 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72548596 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
72548610 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72548620 original size:27 final size:27
Alignment explanation
Indices: 72548540--72548622 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
72548530 TAAATTGTAC
* *
72548540 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
72548568 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
72548595 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
72548622 A
1 A
72548623 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:72548623 original size:29 final size:27
Alignment explanation
Indices: 72548512--72548623 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
72548502 CATGAGATTG
** * *
72548512 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
72548541 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
72548569 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
72548596 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
72548624 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:72559292 original size:27 final size:28
Alignment explanation
Indices: 72559208--72559305 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
72559198 CATGAGATTG
* * * *
72559208 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
72559237 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72559265 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72559292 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
72559306 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72559316 original size:27 final size:27
Alignment explanation
Indices: 72559236--72559318 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
72559226 TAAATTGTAC
* *
72559236 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
72559264 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
72559291 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
72559318 A
1 A
72559319 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:72559319 original size:29 final size:27
Alignment explanation
Indices: 72559208--72559319 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
72559198 CATGAGATTG
** * *
72559208 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
72559237 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
72559265 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
72559292 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
72559320 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:72566733 original size:47 final size:47
Alignment explanation
Indices: 72566674--72566795 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
72566664 GCATTGGCAC
72566674 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
72566721 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
72566768 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
72566796 CCAAGGCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:72566897 original size:55 final size:53
Alignment explanation
Indices: 72566782--72566970 Score: 139
Period size: 55 Copynumber: 3.5 Consensus size: 53
72566772 ATAAGGATAT
* * * * * ***
72566782 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTCCTATAAGG-TAAGGAAAT
1 CATGTAAGACCAAGCCAAGACATGGCATTGATGAGTTC-ATAAGGCAAAGG-TCC
* * * *
72566836 CATGTAAGCCCAAGTCTAGATATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCAAGCCAAGACATGGCATTGATGAGTT-C-ATAAGGCAAAGGTCC
* * * *
72566891 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC-AAGGATAC
1 CATGTAAGACCAAGCCAAGACATGGCATTGATGAGTTCATAAGGCAAAGG-TCC
* * * *
72566944 CACGTAAGACCATGTCAAGAGATGGCA
1 CATGTAAGACCAAGCCAAGACATGGCA
72566971 ATGGTAAGTT
Statistics
Matches: 108, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
52 4 0.04
53 32 0.30
54 30 0.28
55 38 0.35
56 4 0.04
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCAAGCCAAGACATGGCATTGATGAGTTCATAAGGCAAAGGTCC
Found at i:72566982 original size:53 final size:54
Alignment explanation
Indices: 72566774--72566981 Score: 197
Period size: 53 Copynumber: 3.9 Consensus size: 54
72566764 TTGGTAAGAT
* * *
72566774 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTCCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * * * ** *
72566828 AAGGAAATCATGTAAGCCCAAGTCTAGATATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
* * *
72566883 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * *
72566936 AAGGATACCACGTAAGACCATGTCAAGAG-ATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAG-GCATGGCATTGATAAGTTC
72566982 AAAAACGAAA
Statistics
Matches: 125, Mismatches: 25, Indels: 9
0.79 0.16 0.06
Matches are distributed among these distances:
52 4 0.03
53 41 0.33
54 38 0.30
55 38 0.30
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:72570159 original size:26 final size:26
Alignment explanation
Indices: 72570130--72570211 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
72570120 TGGTACAAAT
72570130 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
72570156 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
72570182 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72570208 TGAT
1 TGAT
72570212 GGGCATTTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:72571848 original size:27 final size:27
Alignment explanation
Indices: 72571808--72571948 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 27
72571798 AGGAAGCGTC
*
72571808 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
72571835 CTGGTGGCTCTGCCA-TATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
72571861 CCTGGTGGCTATGCCACAATTATTTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
72571889 CTGGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
72571916 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
72571943 CTGGTG
1 CTGGTG
72571949 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 7, Indels: 18
0.80 0.06 0.15
Matches are distributed among these distances:
26 11 0.11
27 82 0.84
28 5 0.05
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:72571889 original size:54 final size:54
Alignment explanation
Indices: 72571805--72571948 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
72571795 TGGAGGAAGC
*
72571805 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
72571859 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
72571913 ATTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
72571949 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:72575813 original size:16 final size:17
Alignment explanation
Indices: 72575792--72575823 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
72575782 TATCTTATGA
72575792 GTATAAAG-ATGGCATT
1 GTATAAAGTATGGCATT
72575808 GTATAAAGTATGGCAT
1 GTATAAAGTATGGCAT
72575824 GATTGCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (17 bp):
GTATAAAGTATGGCATT
Found at i:72580645 original size:47 final size:47
Alignment explanation
Indices: 72580427--72580652 Score: 169
Period size: 49 Copynumber: 4.7 Consensus size: 47
72580417 ATTGAGACGA
* *
72580427 GAGCTAGTGTAACA-CATGTCTGGGACAT-GCATCAGCCTCGA--GAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA-ACTCGATGGAT
* * * *
72580471 GTAAGCCAGTGTAAGA-CATGTTTGGGACATGGCATCGAAATGGATATGTGA-
1 G--AGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AACTCG--ATG-GAT
* *** *
72580522 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGTCTCGATTTTGAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGC-ATCAACTCGA--TGGAT
* * * *
72580572 -AGTTAGTGTAAGACCATGTTTAGGACATGGCATCAACTTGATGGAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGATGGAT
*
72580618 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
72580653 GGCATTATAC
Statistics
Matches: 139, Mismatches: 28, Indels: 27
0.72 0.14 0.14
Matches are distributed among these distances:
44 1 0.01
46 28 0.20
47 37 0.27
48 7 0.05
49 43 0.31
50 19 0.14
51 2 0.01
52 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGATGGAT
Found at i:72581624 original size:15 final size:15
Alignment explanation
Indices: 72581604--72581634 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72581594 GCTGGCATCA
*
72581604 GAAACAGAATGTCAT
1 GAAACAAAATGTCAT
72581619 GAAACAAAATGTCAT
1 GAAACAAAATGTCAT
72581634 G
1 G
72581635 GTTTTTAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (15 bp):
GAAACAAAATGTCAT
Found at i:72581867 original size:21 final size:21
Alignment explanation
Indices: 72581841--72581888 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
72581831 TTATAATGAC
* *
72581841 CACACGGGTGTATTGTCCTTT
1 CACACGGGTGTAGTGCCCTTT
*
72581862 CACACGGGTGTGGTGCCCTTT
1 CACACGGGTGTAGTGCCCTTT
72581883 CACACG
1 CACACG
72581889 AGCGTGTGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.29, G:0.27, T:0.29
Consensus pattern (21 bp):
CACACGGGTGTAGTGCCCTTT
Found at i:72581899 original size:20 final size:21
Alignment explanation
Indices: 72581857--72581900 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
72581847 GGTGTATTGT
* *
72581857 CCTTTCACACGGGTGTGGTGC
1 CCTTTCACACGAGCGTGGTGC
72581878 CCTTTCACACGAGCGT-GTGC
1 CCTTTCACACGAGCGTGGTGC
72581898 CCT
1 CCT
72581901 GTTTTCAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.11, C:0.34, G:0.27, T:0.27
Consensus pattern (21 bp):
CCTTTCACACGAGCGTGGTGC
Found at i:72585008 original size:55 final size:54
Alignment explanation
Indices: 72584872--72585271 Score: 278
Period size: 55 Copynumber: 7.5 Consensus size: 54
72584862 TTCCTTTTTG
* * * *
72584872 AACTTACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCCTTGCCTTAT-G-
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGT
* *
72584925 AACTCACCAATGCCATGCCTT-AGCATGGTCTTACATGGGACCTTTGCCTTATAGT
1 AACTTACCAATGCCATGCCTTGA-CATGGTCTTACATGGTACC-TTGCCTTATAGT
* * * * *
72584980 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTAATA-T
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGT
* ** * * **
72585034 AACTTATCAATTACATGCCTTGGCATGGTTTTACAT-G-A-AAT-CC-T-TA-T
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGT
** * *
72585081 --CTTACCAAATGCCATGTTCC-AAACATGGTCTTACATGGTATGCTTGTCTTAT-G-
1 AACTTACC-AATGCCATG--CCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGT
* * * *
72585134 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAGT
* * * * *
72585189 AACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTCCCGTT-CCTTATAG-
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACC-TTGCCTTATAGT
* *
72585243 AACTTATCAATGCCATGCCTTGGCATGGT
1 AACTTACCAATGCCATGCCTTGACATGGT
72585272 GTAACACCCC
Statistics
Matches: 272, Mismatches: 51, Indels: 47
0.74 0.14 0.13
Matches are distributed among these distances:
45 5 0.02
46 7 0.03
47 15 0.06
48 3 0.01
49 3 0.01
50 1 0.00
51 1 0.00
52 7 0.03
53 65 0.24
54 70 0.26
55 88 0.32
56 7 0.03
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.35
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGT
Found at i:72585262 original size:209 final size:209
Alignment explanation
Indices: 72584894--72585271 Score: 632
Period size: 209 Copynumber: 1.8 Consensus size: 209
72584884 CCATGTCTTG
*
72584894 ACATAGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTAGCATGGTCTTAC
1 ACATAGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTAGCATGGTCTTAC
* *
72584959 ATGGGACCTTTGCCTTATAGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTCCCT
* *
72585024 TGCCTAATATAACTTATCAATTACATGCCTTGGCATGGTTTTACATGAAATCCTTATCTTACCAA
131 TGCCTAATAGAACTTATCAATGACATGCCTTGGCATGGTTTTACATGAAATCCTTATCTTACCAA
72585089 ATGCCATGTTCCAA
196 ATGCCATGTTCCAA
* * * *
72585103 ACATGGTCTTACATGGTATGCTTGTCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATAGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTAGCATGGTCTTAC
*
72585168 ATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTCCCG
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTCCC-
* *
72585233 TT-CCTTATAGAACTTATCAATGCCATGCCTTGGCATGGT
130 TTGCCTAATAGAACTTATCAATGACATGCCTTGGCATGGT
72585272 GTAACACCCC
Statistics
Matches: 156, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
209 154 0.99
210 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.35
Consensus pattern (209 bp):
ACATAGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTAGCATGGTCTTAC
ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTCCCT
TGCCTAATAGAACTTATCAATGACATGCCTTGGCATGGTTTTACATGAAATCCTTATCTTACCAA
ATGCCATGTTCCAA
Found at i:72589086 original size:120 final size:120
Alignment explanation
Indices: 72588849--72589145 Score: 427
Period size: 120 Copynumber: 2.5 Consensus size: 120
72588839 ACCCAAGTTT
* * * * *
72588849 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGA
* * * *
72588913 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 AACTCACACAAATGCCTTCGGCTCTTAGCCCGGATAAATCAACTAGCACAAATGC
* *
72588968 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGA
*
72589033 AACTCACACAAATGCCTTCGGCTCTTAGCCCGGATAAAATC-ACTAGCATAAATGC
66 AACTCACACAAATGCCTTCGGCTCTTAGCCCGGAT-AAATCAACTAGCACAAATGC
* * * *
72589088 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
72589146 ATATCATTCA
Statistics
Matches: 159, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
119 10 0.06
120 145 0.91
121 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGA
AACTCACACAAATGCCTTCGGCTCTTAGCCCGGATAAATCAACTAGCACAAATGC
Found at i:72589146 original size:40 final size:40
Alignment explanation
Indices: 72588858--72589148 Score: 324
Period size: 40 Copynumber: 7.3 Consensus size: 40
72588848 TCTTCGGAAT
* * * *
72588858 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * *
72588897 TTAACCCGGGTATAGAA--ACTCGCACAAATGCCTTCGGGTC
1 TTAGCCC-GG-ATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
72588937 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
*
72588977 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
72589017 TTAACCCGGGT-ATAGCAACTCA-CACAAATGCCTTCGGCTC
1 TTAGCCCGGATAAAATC-ACT-AGCACAAATGCCTTCGGGTC
* *
72589057 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
72589097 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
72589137 TTAGCCCGGATA
1 TTAGCCCGGATA
72589149 TCATTCAAAT
Statistics
Matches: 217, Mismatches: 24, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
37 1 0.00
38 2 0.01
39 9 0.04
40 190 0.88
41 10 0.05
42 5 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:72590806 original size:47 final size:47
Alignment explanation
Indices: 72590755--72590924 Score: 295
Period size: 47 Copynumber: 3.6 Consensus size: 47
72590745 GGGTTGTCAC
* *
72590755 ACATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAA
72590802 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAA
* * *
72590849 ACATGTTCTTACATGGTATCCTTGTATTACCAAATTTCATGTTCCAA
1 ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAA
72590896 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
72590925 GTTCCAATGC
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.38
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAA
Found at i:72597346 original size:46 final size:46
Alignment explanation
Indices: 72597288--72597454 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
72597278 TTATTTGTGT
72597288 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
*
72597334 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTTAGACGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-TT--ATGAGA
* * * * * *
72597382 GCTAGTGTAAGATATGTCTGGAATATGCATCGGCCTCGA-GATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGA
*
72597428 GCCAGTGTAAGACAAGTCTGGGACATG
1 GCCAGTGTAAGACATGTCTGGGACATG
72597455 GTATCGGCAC
Statistics
Matches: 98, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
45 3 0.03
46 44 0.45
47 28 0.29
48 21 0.21
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:72597359 original size:47 final size:48
Alignment explanation
Indices: 72597288--72597608 Score: 188
Period size: 47 Copynumber: 6.8 Consensus size: 48
72597278 TTATTTGTGT
72597288 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
*
72597334 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTTAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACA-TT--ATGAGA
* * * * * *
72597382 GCTAGTGTAAGA-TATGTCTGGAATAT-GCATCGGCCTCGA-GATGTA-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATG-AGA
* * *
72597428 GCCAGTGTAAGA-CAAGTCTGGGACATGGTATCGG-CACGGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC--AT-TATGAGA
** * * * * ** *
72597477 GGTAGTGTAAGACCATGTTTGGCACATGGCGTCTGCCTTGATT-TCGAAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-ACATTAT-GAGA
* * * *
72597526 GTCAGTGTAAGACCATGTTTAGGAAATGGCATC-G--AC-TTGATGGATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-AT-GA-GA
* *
72597573 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
72597609 ATTATACCCA
Statistics
Matches: 209, Mismatches: 42, Indels: 45
0.71 0.14 0.15
Matches are distributed among these distances:
44 2 0.01
45 3 0.01
46 48 0.23
47 66 0.32
48 25 0.12
49 45 0.22
50 19 0.09
51 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
Found at i:72605807 original size:68 final size:64
Alignment explanation
Indices: 72605697--72605914 Score: 156
Period size: 68 Copynumber: 3.3 Consensus size: 64
72605687 ATACAGATAG
* * * * * *
72605697 TATGTAGCTAGGTCACATGTATGGTGCTGGGTGCACATCATGT-GTACAAGAGAGCTACAAGACA
1 TATGTAGCTAGGTCACATGGATGATACTAGGTGCACACCATGTAG-ACAAGAAAGCTAC--GACA
72605761 TTA
63 -TA
* * * **
72605764 TTATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAAAGCTACGGGATA
1 -TATGTAGCTAGGTCACATGGATGATACTAGGTGCACACCATGTAGACAAGAAAGCTACGACATA
* * * *
72605829 TATGTAGCTAGGTCACATGCG-TGGT-TTCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGA
1 TATGTAGCTAGGTCACATG-GATGATACT-AGGT---GCACACCATGTAGACAAGAAAGCTACGA
*
72605892 GATA
61 CATA
* *
72605896 AAT-TGGCTAGGTCACATGG
1 TATGTAGCTAGGTCACATGG
72605915 GTGGTACTGA
Statistics
Matches: 125, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
63 1 0.01
64 25 0.20
65 4 0.03
66 16 0.13
67 31 0.25
68 47 0.38
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGATGATACTAGGTGCACACCATGTAGACAAGAAAGCTACGACATA
Found at i:72607937 original size:25 final size:25
Alignment explanation
Indices: 72607909--72607974 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
72607899 TTCTATGGTG
**
72607909 AGTTATCTGTAAAGCCTTTGTGGCA
1 AGTTATCTGTAAAGCCTCCGTGGCA
*
72607934 AGTTATCTATAAAGCCTCCGTGGCA
1 AGTTATCTGTAAAGCCTCCGTGGCA
72607959 AGTTATCTGTAAAGCC
1 AGTTATCTGTAAAGCC
72607975 ATATTGTCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (25 bp):
AGTTATCTGTAAAGCCTCCGTGGCA
Found at i:72608062 original size:25 final size:25
Alignment explanation
Indices: 72608025--72608094 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
72608015 AAACCACATC
* *
72608025 AAGCTTCTGTGGCGAGTTATCTACA
1 AAGCCTCTATGGCGAGTTATCTACA
* **
72608050 AAGCCTCTATGGCGAGTTCTCTGTA
1 AAGCCTCTATGGCGAGTTATCTACA
*
72608075 AAGCCTTTATGGCGAGTTAT
1 AAGCCTCTATGGCGAGTTAT
72608095 TTGTAATGCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (25 bp):
AAGCCTCTATGGCGAGTTATCTACA
Found at i:72608093 original size:130 final size:130
Alignment explanation
Indices: 72607863--72608100 Score: 307
Period size: 130 Copynumber: 1.8 Consensus size: 130
72607853 AAACACGATT
* * ** *
72607863 GTTGGTGTGGTGTATTGGTGGCAAACCACATCTAAATTCTATGGTGAGTTATCTGTAAAGCCTTT
1 GTTGGTGTGGTGCATTGGTGGCAAACCACATCTAAATTCTATGGCGAGTTATCTACAAAGCCTCT
* *
72607928 GTGGCAAGTTATCTATAAAGCCTCCGTGGCAAGTTATCTGTAAAGCCATATTGTCAAACATAATA
66 ATGGCAAGTTATCTATAAAGCCTCCATGGCAAGTTATCTGTAAAGCCATATTGTCAAACATAATA
* * *
72607993 GTTGGTGTGGTGCCTTGGTGGCAAACCACATC-AAGCTTCTGTGGCGAGTTATCTACAAAGCCTC
1 GTTGGTGTGGTGCATTGGTGGCAAACCACATCTAA-ATTCTATGGCGAGTTATCTACAAAGCCTC
* * * ** * *
72608057 TATGGCGAGTTCTCTGTAAAGCCTTTATGGCGAGTTATTTGTAA
65 TATGGCAAGTTATCTATAAAGCCTCCATGGCAAGTTATCTGTAA
72608101 TGCCCTTGTG
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
129 2 0.02
130 88 0.98
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (130 bp):
GTTGGTGTGGTGCATTGGTGGCAAACCACATCTAAATTCTATGGCGAGTTATCTACAAAGCCTCT
ATGGCAAGTTATCTATAAAGCCTCCATGGCAAGTTATCTGTAAAGCCATATTGTCAAACATAATA
Found at i:72608099 original size:25 final size:25
Alignment explanation
Indices: 72608034--72608147 Score: 86
Period size: 25 Copynumber: 4.6 Consensus size: 25
72608024 CAAGCTTCTG
* ** *
72608034 TGGCGAGTTATCTACAAAGCCTCTA
1 TGGCGAGTTATTTGTAAAGCCTTTA
* *
72608059 TGGCGAGTTCTCTGTAAAGCCTTTA
1 TGGCGAGTTATTTGTAAAGCCTTTA
* * *
72608084 TGGCGAGTTATTTGTAATGCCCTTG
1 TGGCGAGTTATTTGTAAAGCCTTTA
* * * * *
72608109 TGGCTAATTATTTGAAAAGCCTATG
1 TGGCGAGTTATTTGTAAAGCCTTTA
72608134 TGGCGTA-TTATTTG
1 TGGCG-AGTTATTTG
72608148 GGAAACCTTG
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
25 71 0.99
26 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.37
Consensus pattern (25 bp):
TGGCGAGTTATTTGTAAAGCCTTTA
Found at i:72611777 original size:23 final size:23
Alignment explanation
Indices: 72611745--72611796 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
72611735 CAATCTATTA
72611745 ATTTA-GATAGTAAAACAATGTG
1 ATTTATGATAGTAAAACAATGTG
72611767 ATTTATGATAGTAAAACAATGTG
1 ATTTATGATAGTAAAACAATGTG
72611790 ATTTATG
1 ATTTATG
72611797 CAATTTATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 5 0.17
23 24 0.83
ACGTcount: A:0.42, C:0.04, G:0.17, T:0.37
Consensus pattern (23 bp):
ATTTATGATAGTAAAACAATGTG
Found at i:72612735 original size:56 final size:56
Alignment explanation
Indices: 72612649--72612768 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
72612639 ACAAGGGATG
72612649 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
72612705 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
72612761 ATGGGCAA
1 ATGGGCAA
72612769 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:72613989 original size:40 final size:39
Alignment explanation
Indices: 72613905--72614089 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
72613895 TCGAATGATG
* * * *
72613905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
72613945 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
72613985 TCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
72614024 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
72614065 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
72614090 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72614041 original size:79 final size:81
Alignment explanation
Indices: 72613905--72614087 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
72613895 TCGAATGATG
* *
72613905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
72613969 TGTGCGAGTTACTA-A
66 TGTACGAGTTACTATA
* * * **
72613984 TTCCGGGCTAAG-CCCGAAGGCATTGGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
72614046 TTTGTACGAGTTACTATA
64 TTTGTACGAGTTACTATA
* *
72614064 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
72614088 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGTTACTATA
Found at i:72614111 original size:79 final size:79
Alignment explanation
Indices: 72613958--72614122 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
72613948 GGACTAAGAT
* * ***
72613958 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
72614023 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
72614037 CCGAAGGCATTTGTACGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTACGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
72614100 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
72614116 CCGAAGG
1 CCGAAGG
72614123 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:72620663 original size:91 final size:93
Alignment explanation
Indices: 72620506--72620687 Score: 350
Period size: 91 Copynumber: 2.0 Consensus size: 93
72620496 CCTAATAGTG
72620506 CATGTAATCAAAGGGGTGGACTTGCATGTCAATTTCCCCCCATTTAAGTACTAGTGGCCGGCCAT
1 CATGTAATCAAAGGGGTGGACTTGCATGTCAATTTCCCCCCATTTAAGTACTAGTGGCCGGCCAT
72620571 GACAAGGGATGATGGGCAAAACATGTTT
66 GACAAGGGATGATGGGCAAAACATGTTT
72620599 CATGTAATCAAA-GGGTGGACTTGCATGTCAATTT-CCCCCATTTAAGTACTAGTGGCCGGCCAT
1 CATGTAATCAAAGGGGTGGACTTGCATGTCAATTTCCCCCCATTTAAGTACTAGTGGCCGGCCAT
72620662 GACAAGGGATGATGGGCAAAACATGT
66 GACAAGGGATGATGGGCAAAACATGT
72620688 CATGAAACAT
Statistics
Matches: 89, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
91 55 0.62
92 22 0.25
93 12 0.13
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (93 bp):
CATGTAATCAAAGGGGTGGACTTGCATGTCAATTTCCCCCCATTTAAGTACTAGTGGCCGGCCAT
GACAAGGGATGATGGGCAAAACATGTTT
Found at i:72620738 original size:56 final size:56
Alignment explanation
Indices: 72620673--72620792 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
72620663 ACAAGGGATG
72620673 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
72620729 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
72620785 ATGGGCAA
1 ATGGGCAA
72620793 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:72622019 original size:40 final size:40
Alignment explanation
Indices: 72621929--72622113 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
72621919 TCGAATGATG
* * *
72621929 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
72621968 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
72622009 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
72622048 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
72622087 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
72622114 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:72622135 original size:79 final size:79
Alignment explanation
Indices: 72621982--72622146 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
72621972 GGACTAAGAT
* **
72621982 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
72622047 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
72622061 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
72622124 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
72622140 CCGAAGG
1 CCGAAGG
72622147 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:72626191 original size:28 final size:28
Alignment explanation
Indices: 72626160--72626222 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
72626150 TCCCATATTA
*
72626160 ATGGGGTATAGGAAA-AGTCTCATAATTT
1 ATGGGGTATA-GAAAGAGTCTCATAACTT
* *
72626188 ATGGGGTATAGAAAGAGTTTTATAACTT
1 ATGGGGTATAGAAAGAGTCTCATAACTT
72626216 ATGGGGT
1 ATGGGGT
72626223 TGATAATGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (28 bp):
ATGGGGTATAGAAAGAGTCTCATAACTT
Found at i:72628884 original size:22 final size:22
Alignment explanation
Indices: 72628854--72628897 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
72628844 TTTGGTATTT
72628854 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
72628876 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
72628898 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:72629732 original size:31 final size:30
Alignment explanation
Indices: 72629695--72629753 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
72629685 CATGCACCAA
* *
72629695 GCTAAATGAATCTCCACATTCGGCTCACCTT
1 GCTAAATGAACCCCCACATTCGGC-CACCTT
72629726 GCTAAATGAACCCCCACATTCGGCCACC
1 GCTAAATGAACCCCCACATTCGGCCACC
72629754 CTACAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.27, C:0.37, G:0.14, T:0.22
Consensus pattern (30 bp):
GCTAAATGAACCCCCACATTCGGCCACCTT
Found at i:72633232 original size:28 final size:28
Alignment explanation
Indices: 72633201--72633263 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
72633191 TCCCATATTA
72633201 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
72633229 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
72633257 ATGGGGT
1 ATGGGGT
72633264 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:72634103 original size:20 final size:20
Alignment explanation
Indices: 72634080--72634119 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
72634070 ATGTAAAGTC
72634080 TTAAAAATAAATATAAAATA
1 TTAAAAATAAATATAAAATA
* * *
72634100 TTAAAATTAATTTTAAAATA
1 TTAAAAATAAATATAAAATA
72634120 ATTTTCAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAAAAATAAATATAAAATA
Found at i:72634115 original size:12 final size:11
Alignment explanation
Indices: 72634100--72634145 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
72634090 ATATAAAATA
72634100 TTAAAATTAATT
1 TTAAAA-TAATT
72634112 TTAAAATAATT
1 TTAAAATAATT
*
72634123 TTCAAA-AATT
1 TTAAAATAATT
72634133 TATAAAA-AATT
1 T-TAAAATAATT
72634144 TT
1 TT
72634146 CTAGAAATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
10 6 0.19
11 19 0.61
12 6 0.19
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (11 bp):
TTAAAATAATT
Found at i:72634123 original size:11 final size:10
Alignment explanation
Indices: 72634094--72634145 Score: 50
Period size: 11 Copynumber: 4.8 Consensus size: 10
72634084 AAATAAATAT
*
72634094 AAAATATTAA
1 AAAATTTTAA
72634104 AATTAATTTTAA
1 AA--AATTTTAA
*
72634116 AATAATTTTCA
1 AA-AATTTTAA
72634127 AAAATTTATAA
1 AAAATTT-TAA
72634138 AAAATTTT
1 AAAATTTT
72634146 CTAGAAATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 8 0.22
11 19 0.53
12 9 0.25
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:72635532 original size:21 final size:21
Alignment explanation
Indices: 72635493--72635532 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
72635483 AGATTCGTTT
*
72635493 TTTTTAATATTTTTATTATAA
1 TTTTTAAGATTTTTATTATAA
72635514 TTTTTAAGATTATTT-TTAT
1 TTTTTAAGATT-TTTATTAT
72635533 TTTTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (21 bp):
TTTTTAAGATTTTTATTATAA
Found at i:72635538 original size:12 final size:12
Alignment explanation
Indices: 72635490--72635542 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
72635480 AGCAGATTCG
* *
72635490 TTTTTTTTAATA
1 TTTTTATTATTA
*
72635502 TTTTTATTATAA
1 TTTTTATTATTA
**
72635514 TTTTTAAGATTA
1 TTTTTATTATTA
*
72635526 TTTTTATTTTTA
1 TTTTTATTATTA
72635538 TTTTT
1 TTTTT
72635543 TTAGAATTAT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (12 bp):
TTTTTATTATTA
Found at i:72640561 original size:55 final size:55
Alignment explanation
Indices: 72640477--72640587 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
72640467 CCTGCGATAC
72640477 ATAGTTTTCTTTCGTGCGATATAGGGATGATAGCATGTAACAATTAAAATATATT
1 ATAGTTTTCTTTCGTGCGATATAGGGATGATAGCATGTAACAATTAAAATATATT
72640532 ATAGTTTTCTTTCGTGCGATATAGGGATGATAGCATGTAACAATTAAAATATATT
1 ATAGTTTTCTTTCGTGCGATATAGGGATGATAGCATGTAACAATTAAAATATATT
72640587 A
1 A
72640588 ATTTCTTTGA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (55 bp):
ATAGTTTTCTTTCGTGCGATATAGGGATGATAGCATGTAACAATTAAAATATATT
Found at i:72641329 original size:13 final size:13
Alignment explanation
Indices: 72641311--72641335 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72641301 TTGGAAAGAG
72641311 ATATCAATTTATA
1 ATATCAATTTATA
72641324 ATATCAATTTAT
1 ATATCAATTTAT
72641336 CTTTGAACCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATCAATTTATA
Found at i:72643090 original size:56 final size:56
Alignment explanation
Indices: 72643030--72643218 Score: 272
Period size: 56 Copynumber: 3.4 Consensus size: 56
72643020 CCTAAACAGG
* * * *
72643030 GTCTTACTCACACACATATATCGGAGTCACATATCGATGCTAATGTATAAAACGTC
1 GTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGTC
* * * *
72643086 GTCTTACTCGCACACATTTATAGAAGTCACATATTGATGCCAACGTATAAAATG-C
1 GTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGTC
* *
72643141 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAGCGTG
1 -GTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGTC
72643198 GTCTTACTCGCACACATATAT
1 GTCTTACTCGCACACATATAT
72643219 TGATGCCATG
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
55 1 0.01
56 116 0.99
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
GTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGTC
Found at i:72647133 original size:27 final size:26
Alignment explanation
Indices: 72647103--72647562 Score: 449
Period size: 27 Copynumber: 17.1 Consensus size: 26
72647093 CCGTCTTTCT
* *
72647103 TTTTCACAAATTGAGGGTGTTTCGTAA
1 TTTT-ACAAATCGAGGGTATTTCGTAA
*
72647130 TTTTACAAATCGAGAGTATTTCGATAA
1 TTTTACAAATCGAGGGTATTTCG-TAA
*
72647157 TTTTACAAATCAAGGGTATTTCAGTAA
1 TTTTACAAATCGAGGGTATTTC-GTAA
* * *
72647184 TTTTACAAATCAAGGGTATTTTGGAAA
1 TTTTACAAATCGAGGGTA-TTTCGTAA
*
72647211 TTTTACAAATCGAGGGTGTTTCGATAA
1 TTTTACAAATCGAGGGTATTTCG-TAA
* * * *
72647238 TTTTACAAATTGAGAGTGTGTCGGTAA
1 TTTTACAAATCGAGGGTATTTC-GTAA
* *
72647265 TTTTACAAATCAAGGGTGTTTCGATAA
1 TTTTACAAATCGAGGGTATTTCG-TAA
* * * *
72647292 TTTCACGAATCGTGGGTATTTCAATAA
1 TTTTACAAATCGAGGGTATTTC-GTAA
*
72647319 TTTTACAAATCGAGGGTATTTTAGTAA
1 TTTTACAAATCGAGGGTA-TTTCGTAA
* * *
72647346 TTTCAC-AATTGAGGGTATTTTTGTAA
1 TTTTACAAATCGAGGGTA-TTTCGTAA
*
72647372 TTTTACAAATCGAGGGTATTTCTATAA
1 TTTTACAAATCGAGGGTATTTC-GTAA
* *
72647399 TTTTACAAATCGAGGGTGTTTTGGTAA
1 TTTTACAAATCGAGGGT-ATTTCGTAA
* *
72647426 TTTCACAAAT-TAGGGGTATTTCGATAA
1 TTTTACAAATCGA-GGGTATTTCG-TAA
*
72647453 TTTTACAGATCGAGGGTATTTCGGTAA
1 TTTTACAAATCGAGGGTATTTC-GTAA
* *
72647480 TTTTAC-AATCGAGGGTATTTTGATGA
1 TTTTACAAATCGAGGGTATTTCG-TAA
*
72647506 TTTTACAAATCGGGGGTATTTCGGTAA
1 TTTTACAAATCGAGGGTATTTC-GTAA
*
72647533 TTTTACAAATCGAGGGCATTTCAGTAA
1 TTTTACAAATCGAGGGTATTTC-GTAA
72647560 TTT
1 TTT
72647563 CTCTTTATCA
Statistics
Matches: 360, Mismatches: 55, Indels: 36
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.00
26 73 0.20
27 272 0.76
28 14 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
TTTTACAAATCGAGGGTATTTCGTAA
Found at i:72647190 original size:54 final size:53
Alignment explanation
Indices: 72647103--72647562 Score: 494
Period size: 54 Copynumber: 8.5 Consensus size: 53
72647093 CCGTCTTTCT
* * * *
72647103 TTTTCACAAATTGAGGGTGTTTCGTAATTTTACAAATCGAGAGTATTTCGATAA
1 TTTT-ACAAATCGAGGGTATTTCGTAATTTTACAAATCGAGGGTATTTCGGTAA
* * * *
72647157 TTTTACAAATCAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTGGAAA
1 TTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATCGAGGGTATTTCGGTAA
* * * * *
72647211 TTTTACAAATCGAGGGTGTTTCGATAATTTTACAAATTGAGAGTGTGTCGGTAA
1 TTTTACAAATCGAGGGTATTTCG-TAATTTTACAAATCGAGGGTATTTCGGTAA
* * * * * **
72647265 TTTTACAAATCAAGGGTGTTTCGATAATTTCACGAATCGTGGGTATTTCAATAA
1 TTTTACAAATCGAGGGTATTTCG-TAATTTTACAAATCGAGGGTATTTCGGTAA
* * * **
72647319 TTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATTGAGGGTATTTTTGTAA
1 TTTTACAAATCGAGGGTA-TTTCGTAATTTTACAAATCGAGGGTATTTCGGTAA
* * *
72647372 TTTTACAAATCGAGGGTATTTCTATAATTTTACAAATCGAGGGTGTTTTGGTAA
1 TTTTACAAATCGAGGGTATTTC-GTAATTTTACAAATCGAGGGTATTTCGGTAA
* * *
72647426 TTTCACAAAT-TAGGGGTATTTCGATAATTTTACAGATCGAGGGTATTTCGGTAA
1 TTTTACAAATCGA-GGGTATTTCG-TAATTTTACAAATCGAGGGTATTTCGGTAA
* * *
72647480 TTTTAC-AATCGAGGGTATTTTGATGATTTTACAAATCGGGGGTATTTCGGTAA
1 TTTTACAAATCGAGGGTATTTCG-TAATTTTACAAATCGAGGGTATTTCGGTAA
*
72647533 TTTTACAAATCGAGGGCATTTCAGTAATTT
1 TTTTACAAATCGAGGGTATTTC-GTAATTT
72647563 CTCTTTATCA
Statistics
Matches: 340, Mismatches: 56, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
52 3 0.01
53 104 0.31
54 228 0.67
55 5 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
TTTTACAAATCGAGGGTATTTCGTAATTTTACAAATCGAGGGTATTTCGGTAA
Found at i:72647429 original size:134 final size:133
Alignment explanation
Indices: 72647103--72647548 Score: 554
Period size: 134 Copynumber: 3.3 Consensus size: 133
72647093 CCGTCTTTCT
* * * * *
72647103 TTTTCACAAATTGAGGGTGTTTC-GTAATTTTACAAATCGAGAGTATTTCGATAATTTTACAAAT
1 TTTT-ACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAAT
* * * * *
72647167 CAAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTGGAAATTTTACAAATCGAGGGTGTTT
65 C-GGGGTATTTCAATAATTTTACAAATCGAGGGTATTTTGGTAATTTTAC-AATCGAGGGTATTT
*
72647232 CGATAA
128 TGATAA
* * * * * *
72647238 TTTTACAAATTGAGAGTGTGTCGGTAATTTTACAAATCAAGGGTGTTTCGATAATTTCACGAATC
1 TTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAATC
* * *
72647303 GTGGGTATTTCAATAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATTGAGGGTATTTTT
66 G-GGGTATTTCAATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAATCGAGGGTA-TTTT
72647368 G-TAA
129 GATAA
** * *
72647372 TTTTACAAATCGAGGGTATTTCTATAATTTTACAAATCGAGGGTGTTTTGGTAATTTCACAAATT
1 TTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAA-T
* * * *
72647437 AGGGGTATTTCGATAATTTTACAGATCGAGGGTATTTCGGTAATTTTACAATCGAGGGTATTTTG
65 CGGGGTATTTCAATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAATCGAGGGTATTTTG
*
72647502 ATGA
130 ATAA
*
72647506 TTTTACAAATCGGGGGTATTTCGGTAATTTTACAAATCGAGGG
1 TTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGG
72647549 CATTTCAGTA
Statistics
Matches: 269, Mismatches: 37, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
133 5 0.02
134 175 0.65
135 89 0.33
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (133 bp):
TTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGATAATTTCACAAATC
GGGGTATTTCAATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAATCGAGGGTATTTTGA
TAA
Found at i:72647922 original size:28 final size:28
Alignment explanation
Indices: 72647878--72647941 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
72647868 TGGCCCTTTT
* * * *
72647878 AGGCCCAATCTCGTTCACGTGGCCTATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
72647906 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
72647934 AGGTCCAA
1 AGGCCCAA
72647942 CTACTTCCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.25, C:0.34, G:0.19, T:0.22
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:72652994 original size:27 final size:27
Alignment explanation
Indices: 72652961--72653014 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
72652951 GTCTTGAAAG
72652961 AATATTGCATGATAAGCTCATCTATGT
1 AATATTGCATGATAAGCTCATCTATGT
72652988 AATATTGCATGATAAGCTCATCTATGT
1 AATATTGCATGATAAGCTCATCTATGT
72653015 TTACTTGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (27 bp):
AATATTGCATGATAAGCTCATCTATGT
Found at i:72655872 original size:22 final size:23
Alignment explanation
Indices: 72655846--72655889 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
72655836 TATCTAACCA
72655846 GGTTTGTTTAC-TTTTTGTTTTG
1 GGTTTGTTTACTTTTTTGTTTTG
*
72655868 GGTTTGTTTTCTTTTTTGTTTT
1 GGTTTGTTTACTTTTTTGTTTT
72655890 ATTGGATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.02, C:0.05, G:0.20, T:0.73
Consensus pattern (23 bp):
GGTTTGTTTACTTTTTTGTTTTG
Found at i:72656156 original size:21 final size:23
Alignment explanation
Indices: 72656114--72656156 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
72656104 AATATTATAA
*
72656114 AAAAGATAAATTTAATATTTTTT
1 AAAAGATAAATTTAATACTTTTT
*
72656137 AAAA-ATAATTTTAA-ACTTTT
1 AAAAGATAAATTTAATACTTTT
72656157 AATCCAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 9 0.50
23 4 0.22
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
AAAAGATAAATTTAATACTTTTT
Done.