Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 222 of 316
Found at i:72661286 original size:6 final size:6
Alignment explanation
Indices: 72661275--72661304 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
72661265 AGTTTTCTCC
72661275 AAAATG AAAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG
72661305 GAGAAAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:72664829 original size:20 final size:20
Alignment explanation
Indices: 72664806--72664844 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
72664796 CACACCTGTG
72664806 TGCATTGGGACACGCCCGTT
1 TGCATTGGGACACGCCCGTT
72664826 TGCATTGGGACACGCCCGT
1 TGCATTGGGACACGCCCGT
72664845 GTGGTCACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (20 bp):
TGCATTGGGACACGCCCGTT
Found at i:72665483 original size:31 final size:31
Alignment explanation
Indices: 72665448--72665507 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
72665438 CAATGAGTTA
72665448 GTCACATAACAAAACACCATGTAATTTATTC
1 GTCACATAACAAAACACCATGTAATTTATTC
72665479 GTCACATAACAAAACACCATGTAATTTAT
1 GTCACATAACAAAACACCATGTAATTTAT
72665508 CTTAGATGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (31 bp):
GTCACATAACAAAACACCATGTAATTTATTC
Found at i:72674011 original size:28 final size:28
Alignment explanation
Indices: 72673961--72674026 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
72673951 TGGGAAGTAT
* * * * *
72673961 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTAATAGGCAATATGAACGAGA
*
72673989 TTGGGCCTAATAGGCAATGTGAACGAGA
1 TTGGGCCTAATAGGCAATATGAACGAGA
72674017 TTGGGCCTAA
1 TTGGGCCTAA
72674027 AGGGGCCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATAGGCAATATGAACGAGA
Found at i:72675038 original size:160 final size:161
Alignment explanation
Indices: 72674350--72675079 Score: 834
Period size: 160 Copynumber: 4.6 Consensus size: 161
72674340 GAAATTACTG
** * * *
72674350 AAATACCCTCGATTTGTAAAATTACCAAAATACTCTCGATTTGTAAAATTACCGAAATACCCTCG
1 AAATACCCTCGATTTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCG
* *
72674415 ATTTGTAAAATTACCGAAATACCATCGATTGTGAAATTACTGAAATACCCTCGA-TTGTGAAATT
66 ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATT
* * *
72674479 ATCGAAATACCCTCGATTTGTAAAATTACCA
131 ACCGAAACACCCTCGATTTGTAAAATTATCA
* * * *
72674510 AAATACCCTCGATTTGTAAAATTACCGAAATACCTTTAATTTGTAAAATTACCAAAATAACCTCG
1 AAATACCCTCGATTTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCG
* *
72674575 ATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCAATTTGTAAAATT
66 ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATT
** * * *
72674640 ACTAAAATACCCTTGA-TTGTGAAATTATCA
131 ACCGAAACACCCTCGATTTGTAAAATTATCA
* * * * ** *
72674670 AAATACCCTCGATTTATAAAATTATTGAAATACCCTCGA-TTGTGAAATTACTGAAATACTCTCG
1 AAATACCCTCGATTTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCG
* * *
72674734 ATTTGTAAAATTACCGAAATACCC-CTAATTTGTGAAATTA-TCGAAACACCTTCGATTTGTAAA
66 ATTTGTAAAATTACCGAAATACCCTC-GA-TTGTGAAATTACT-GAAATACCCTCGATTTGTAAA
*
72674797 ATTACCGAAACACCCTTGATTTGTAAAATTATCA
128 ATTACCGAAACACCCTCGATTTGTAAAATTATCA
* * * *
72674831 AAATACCCCCGATTTGTAAAATTA-TCGAAACAACCTTGATTTGTAAAATTACCAAAACACCCTC
1 AAATACCCTCGATTTGTAAAATTACT-GAAATACCCTTGATTTGTAAAATTACCAAAATACCCTC
** * *
72674895 GATTTGTAAAATTATTGAAATACCCTCGATTATAAAATTA-TGAAAATACCCTCGATTTGTAAAA
65 GATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTG-AAATACCCTCGATTTGTAAAA
* *
72674959 TTA-CGAAACACCCCCGATTTGTAAAATCATCA
129 TTACCGAAACACCCTCGATTTGTAAAATTATCA
* * * * * **
72674991 AAATACCAT-TATAGTGTAATATTACTGAAATACCCTTG-TAGTGTAAAATTACTGAAATACCCT
1 AAATACCCTCGAT-TTGTAAAATTACTGAAATACCCTTGAT-TTGTAAAATTACCAAAATACCCT
* * * *
72675054 TGTAGTT-TAAAATGACCGACATACCC
64 CG-ATTTGTAAAATTACCGAAATACCC
72675080 CTGTAGGGTA
Statistics
Matches: 483, Mismatches: 74, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
158 1 0.00
159 48 0.10
160 288 0.60
161 102 0.21
162 43 0.09
163 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (161 bp):
AAATACCCTCGATTTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCG
ATTTGTAAAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATT
ACCGAAACACCCTCGATTTGTAAAATTATCA
Found at i:72675066 original size:27 final size:27
Alignment explanation
Indices: 72674341--72675053 Score: 706
Period size: 27 Copynumber: 26.7 Consensus size: 27
72674331 TAATAAAGAG
72674341 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
72674368 AAATTACCAAAATACTCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
72674395 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
72674422 AAATTACCGAAATACCATCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
72674448 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
72674474 AAATTA-TCGAAATACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
**
72674501 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * **
72674528 AAATTACCGAAATACCTTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
72674555 AAATTACCAAAATAACCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
72674582 AAATTA-TCGAAATACCCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
*
72674608 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
72674635 AAATTACTAAAATACCCTTGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
72674661 AAATTA-TCAAAATACCCTCGATTTATA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
72674688 AAATTATTGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
72674714 AAATTACTGAAATACTCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
72674741 AAATTACCGAAATACCC-CTAATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
72674768 AAATTA-TCGAAACACCTTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
72674795 AAATTACCGAAACACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
72674822 AAATTA-TCAAAATACCCCCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
72674849 AAATTA-TCGAAACAACCTTGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
** *
72674876 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
72674903 AAATTATTGAAATACCCTCGA-TTATA
1 AAATTACTGAAATACCCTCGATTTGTA
72674929 AAATTA-TGAAAATACCCTCGATTTGTA
1 AAATTACTG-AAATACCCTCGATTTGTA
* *
72674956 AAATTAC-GAAACACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * * *
72674982 AAATCA-TCAAAATACCAT-TATAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
* * *
72675009 ATATTACTGAAATACCCTTG-TAGTGTA
1 AAATTACTGAAATACCCTCGAT-TTGTA
72675036 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
72675054 TGTAGTTTAA
Statistics
Matches: 575, Mismatches: 87, Indels: 48
0.81 0.12 0.07
Matches are distributed among these distances:
25 4 0.01
26 159 0.28
27 409 0.71
28 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:72675077 original size:27 final size:27
Alignment explanation
Indices: 72674991--72675093 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
72674981 AAAATCATCA
* * * * *
72674991 AAATACCATTATAGTGTAATATTACTG
1 AAATACCCTTGTAGTGTAAAATGACCG
* *
72675018 AAATACCCTTGTAGTGTAAAATTACTG
1 AAATACCCTTGTAGTGTAAAATGACCG
*
72675045 AAATACCCTTGTAGTTTAAAATGACCG
1 AAATACCCTTGTAGTGTAAAATGACCG
* * *
72675072 ACATACCCCTGTAGGGTAAAAT
1 AAATACCCTTGTAGTGTAAAAT
72675094 AACTGTTTTG
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGTAGTGTAAAATGACCG
Found at i:72682120 original size:22 final size:22
Alignment explanation
Indices: 72682092--72682136 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
72682082 ATCCATGGAG
*
72682092 ATAGTCTGTTGGGACAATAAAC
1 ATAGTCTATTGGGACAATAAAC
*
72682114 ATAGTCTATTGGGACAGTAAAC
1 ATAGTCTATTGGGACAATAAAC
72682136 A
1 A
72682137 CAAAATAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (22 bp):
ATAGTCTATTGGGACAATAAAC
Found at i:72682171 original size:33 final size:33
Alignment explanation
Indices: 72682125--72682213 Score: 108
Period size: 33 Copynumber: 2.7 Consensus size: 33
72682115 TAGTCTATTG
72682125 GGACAGTAAACACAAAATAGAGATAGTCCACTA
1 GGACAGTAAACACAAAATAGAGATAGTCCACTA
* * * ** *
72682158 GGATC-GTAGACACAAATTAGAGGTAGTCTGCTG
1 GGA-CAGTAAACACAAAATAGAGATAGTCCACTA
72682191 GGACAGTAAACACAAAATAGAGA
1 GGACAGTAAACACAAAATAGAGA
72682214 CACTTCATTC
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
32 1 0.02
33 43 0.96
34 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.17
Consensus pattern (33 bp):
GGACAGTAAACACAAAATAGAGATAGTCCACTA
Found at i:72682294 original size:33 final size:33
Alignment explanation
Indices: 72682228--72682301 Score: 91
Period size: 33 Copynumber: 2.2 Consensus size: 33
72682218 TCATTCAGAC
*
72682228 AGTAAACATAGAATAAAAGTAGTCTACTTGGAT
1 AGTAAACATAGAACAAAAGTAGTCTACTTGGAT
72682261 AGTAAACATAGAAC-AAAGATAGT-T-CATTGGGAT
1 AGTAAACATAGAACAAAAG-TAGTCTAC-TT-GGAT
72682294 AGTAAACA
1 AGTAAACA
72682302 CGAGGTAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
31 1 0.03
32 7 0.19
33 29 0.78
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.24
Consensus pattern (33 bp):
AGTAAACATAGAACAAAAGTAGTCTACTTGGAT
Found at i:72685468 original size:39 final size:39
Alignment explanation
Indices: 72685414--72685628 Score: 306
Period size: 39 Copynumber: 5.5 Consensus size: 39
72685404 AACATGTTGT
* *
72685414 TGAGTATTATGATATATGCTTGAATGTTAAGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
72685453 TGAGTATTGTGATATATGCTTAAATG-TATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
72685491 TGAGTATTGTGATATATGTTTGAAAGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
72685530 TGAGTATTGAGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * * * *
72685569 TAAGTATTGTGGTATATGCTTGACTATTATATGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
72685608 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
72685629 AAAAGTGAAT
Statistics
Matches: 156, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 34 0.22
39 122 0.78
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:72685470 original size:16 final size:17
Alignment explanation
Indices: 72685444--72685508 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 17
72685434 TGAATGTTAA
72685444 GTGATTATATGAGTATT
1 GTGATTATATGAGTATT
72685461 GTGA-TATATGCTTAAATGTA-T
1 GTGATTATATG-----A-GTATT
72685482 GTGATTATATGAGTATT
1 GTGATTATATGAGTATT
72685499 GTGA-TATATG
1 GTGATTATATG
72685509 TTTGAAAGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 17
0.70 0.00 0.30
Matches are distributed among these distances:
16 15 0.38
17 10 0.25
21 6 0.15
22 9 0.22
ACGTcount: A:0.31, C:0.02, G:0.23, T:0.45
Consensus pattern (17 bp):
GTGATTATATGAGTATT
Found at i:72685547 original size:116 final size:117
Alignment explanation
Indices: 72685414--72685634 Score: 322
Period size: 116 Copynumber: 1.9 Consensus size: 117
72685404 AACATGTTGT
*
72685414 TGAGTATTATGATATATGCTTGAATGTTAAGTGATTATATGAGTATTGTGATATATGCTT-A-AA
1 TGAGTATTATGATATATGCTTGAATGTTAAGTGATTATATAAGTATTGTGATATATGCTTGACAA
* * * *
72685477 TGTATGTGATTATATGAGTATTGTGATATATGTTTGAAAGTTATGTGATTATA
66 T-TATATGATTATATGAGTAATGTGATATATGCTTAAAAGTTATGTGATTATA
* * *
72685530 TGAGTATTGA-GATATATGCTTGAATGTTATGTGATTATATAAGTATTGTGGTATATGCTTGACT
1 TGAGTATT-ATGATATATGCTTGAATGTTAAGTGATTATATAAGTATTGTGATATATGCTTGACA
*
72685594 ATTATATGATTATATGTGTAATGTGATATATGCTTAAAAGT
65 ATTATATGATTATATGAGTAATGTGATATATGCTTAAAAGT
72685635 GAATATGATT
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
116 55 0.59
117 36 0.39
118 2 0.02
ACGTcount: A:0.32, C:0.03, G:0.21, T:0.44
Consensus pattern (117 bp):
TGAGTATTATGATATATGCTTGAATGTTAAGTGATTATATAAGTATTGTGATATATGCTTGACAA
TTATATGATTATATGAGTAATGTGATATATGCTTAAAAGTTATGTGATTATA
Found at i:72686424 original size:20 final size:20
Alignment explanation
Indices: 72686384--72686424 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
72686374 TTAAGGAAAA
*
72686384 TATCGATATCCTAGTGTTAG
1 TATCGATATCCTAGTGATAG
72686404 TATCGATA-CCTATGTGATAG
1 TATCGATATCCTA-GTGATAG
72686424 T
1 T
72686425 TTTGAGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (20 bp):
TATCGATATCCTAGTGATAG
Found at i:72690402 original size:57 final size:59
Alignment explanation
Indices: 72690315--72690428 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 59
72690305 TAATATGACA
* *
72690315 AAAATGGAGAAATGAGAAACATTTGAAAATGAATG-AGGTTTTCTGC-AAAATGAAAAAT
1 AAAATAGAGAAATGAGAAACATTTGAAAATGAATGTA-GTTTTCTCCAAAAATGAAAAAT
* *
72690373 AAAATAGAGAAATGA-AAACATTTGGAAATGAGTGTAGTTTTCTCCAAAAATGAAAA
1 AAAATAGAGAAATGAGAAACATTTGAAAATGAATGTAGTTTTCTCCAAAAATGAAAA
72690429 TGAAAATGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
57 25 0.50
58 25 0.50
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (59 bp):
AAAATAGAGAAATGAGAAACATTTGAAAATGAATGTAGTTTTCTCCAAAAATGAAAAAT
Found at i:72693311 original size:10 final size:10
Alignment explanation
Indices: 72693296--72693356 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
72693286 ATATTGTTCT
72693296 ACATGATATG
1 ACATGATATG
72693306 ACATGATATG
1 ACATGATATG
72693316 CACATGATATG
1 -ACATGATATG
** *
72693327 TTATGAGATG
1 ACATGATATG
72693337 CACATGATATG
1 -ACATGATATG
72693348 -CTATGATAT
1 AC-ATGATAT
72693357 ACTCATTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (10 bp):
ACATGATATG
Found at i:72693320 original size:21 final size:20
Alignment explanation
Indices: 72693296--72693372 Score: 82
Period size: 21 Copynumber: 3.7 Consensus size: 20
72693286 ATATTGTTCT
72693296 ACATGATATGACATGATATGC
1 ACATGATATG-CATGATATGC
* *
72693317 ACATGATATGTTATGAGATGC
1 ACATGATATG-CATGATATGC
*
72693338 ACATGATATGCTATGATATAC
1 ACATGATATGC-ATGATATGC
* *
72693359 TCATTATATGCATG
1 ACATGATATGCATG
72693373 GGTTGGGTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
20 3 0.06
21 44 0.94
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:72710384 original size:86 final size:85
Alignment explanation
Indices: 72710226--72710396 Score: 234
Period size: 86 Copynumber: 2.0 Consensus size: 85
72710216 CTTTCACAAA
* * * * * *
72710226 GAGACTTTAAAAATGCTTTTTCACCTACAGCATATTTAGTTTCTTTTTGTTTCAGACCAGCATAT
1 GAGACTTTAAAAATACTTTTTCACCCACAACATATTCAATTTCTTTCTGTTTCAGACCAGCATAT
72710291 GAATTTTGCCTATCTGATGC
66 GAATTTTGCCTATCTGATGC
* *
72710311 GAGACTTTTAGAAATACTTTTTCACCCACAACATATTCAATTTCTTTCTGTTTCAGATCAGCATA
1 GAGAC-TTTAAAAATACTTTTTCACCCACAACATATTCAATTTCTTTCTGTTTCAGACCAGCATA
* * *
72710376 TGATTTTTGTCTATTTGATGC
65 TGAATTTTGCCTATCTGATGC
72710397 TGCTTTCAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 5 0.07
86 69 0.93
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (85 bp):
GAGACTTTAAAAATACTTTTTCACCCACAACATATTCAATTTCTTTCTGTTTCAGACCAGCATAT
GAATTTTGCCTATCTGATGC
Found at i:72711458 original size:49 final size:50
Alignment explanation
Indices: 72711381--72711480 Score: 148
Period size: 49 Copynumber: 2.0 Consensus size: 50
72711371 GCAAACAACC
* *
72711381 ATCATCGCAAATACTCAGTTGAGTAAACATTCCTCTCAATTTGAATACTAA
1 ATCATCG-AAATACTCAGCTGAGCAAACATTCCTCTCAATTTGAATACTAA
* *
72711432 ATCATCG-AATACTTAGCTGAGCAAACATTCCTTTCAATTTGAATACTAA
1 ATCATCGAAATACTCAGCTGAGCAAACATTCCTCTCAATTTGAATACTAA
72711481 CTTTCAACTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 38 0.84
51 7 0.16
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (50 bp):
ATCATCGAAATACTCAGCTGAGCAAACATTCCTCTCAATTTGAATACTAA
Found at i:72712928 original size:17 final size:18
Alignment explanation
Indices: 72712906--72712939 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72712896 CACATTGAAG
72712906 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
72712923 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
72712940 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:72713435 original size:6 final size:6
Alignment explanation
Indices: 72713424--72713530 Score: 116
Period size: 6 Copynumber: 17.8 Consensus size: 6
72713414 AACCAAAATG
*
72713424 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
*
72713472 AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
72713520 AGAATC AGAAT
1 AGAATC AGAAT
72713531 TTGGTGACAG
Statistics
Matches: 87, Mismatches: 4, Indels: 20
0.78 0.04 0.18
Matches are distributed among these distances:
5 8 0.09
6 73 0.84
7 4 0.05
8 2 0.02
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:72713458 original size:30 final size:30
Alignment explanation
Indices: 72713424--72713555 Score: 187
Period size: 30 Copynumber: 4.4 Consensus size: 30
72713414 AACCAAAATG
*
72713424 AGAATCAGAATCAGA-ATCAGTAACAGAATC
1 AGAATCAGAATCA-ATATTAGTAACAGAATC
72713454 AGAATCAGAATCAATATTAGTAACAGAATC
1 AGAATCAGAATCAATATTAGTAACAGAATC
72713484 AGAATCAGAATCAATATTAGTAACAGAATC
1 AGAATCAGAATCAATATTAGTAACAGAATC
* * *
72713514 AGAATCAGAATCAGA-ATTTGGTGACAGGATC
1 AGAATCAGAATCA-ATA-TTAGTAACAGAATC
72713545 AGAATCAGAAT
1 AGAATCAGAAT
72713556 GTGAATGCAA
Statistics
Matches: 95, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
29 1 0.01
30 71 0.75
31 23 0.24
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAATATTAGTAACAGAATC
Found at i:72714096 original size:27 final size:26
Alignment explanation
Indices: 72714057--72714139 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
72714047 TCGATCGGTC
* *
72714057 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
72714083 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
72714110 AATAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72714137 AAC
1 AAC
72714140 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.14
27 43 0.86
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72714368 original size:27 final size:27
Alignment explanation
Indices: 72714338--72714525 Score: 216
Period size: 27 Copynumber: 7.0 Consensus size: 27
72714328 GGGGCAAAAT
* * * *
72714338 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72714365 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72714392 GGTATTTTTAGCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72714419 GATAATTCTACCCTACGAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72714446 GATAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72714473 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
72714500 GGTAATTCTACCCTAC-AGAGGTATTT
1 GGTAATTCTACCCTACAAG-GGTATTT
72714526 TAGTAATTTC
Statistics
Matches: 136, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 1 0.01
27 135 0.99
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72714576 original size:27 final size:27
Alignment explanation
Indices: 72714543--72715084 Score: 612
Period size: 27 Copynumber: 20.1 Consensus size: 27
72714533 TTCACAATTA
72714543 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * *
72714570 AGGGTAAAAC-GATAATTTTGTAAACCA
1 AGGGTAAAACAG-TAATTCTGTAAATCG
* *
72714597 AGGGTAAACCAGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * **
72714624 AGGGTAAAATAGTAATTTTACAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
72714651 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
72714678 AGGGTAAAATAGTAATTCTATAAA-CTG
1 AGGGTAAAACAGTAATTCTGTAAATC-G
*
72714705 AGGGTAAAA-TGATAATTCTGTAAATCG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
**
72714732 AGGGTAAAATGGTAATTCTGTAAA-CTG
1 AGGGTAAAACAGTAATTCTGTAAATC-G
*
72714759 ATGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * ** *
72714786 AGGGTAAAATAGTAATTTTACAAATTG
1 AGGGTAAAACAGTAATTCTGTAAATCG
72714813 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
** *
72714840 AGGGTAAAATGGTAATTCTGTAAA-CTA
1 AGGGTAAAACAGTAATTCTGTAAATC-G
* *
72714867 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* ** *
72714894 AGGGTAAAACAGTAATTTTACAAATTG
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
72714921 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
72714948 AGGGTAAAATAGTAATTCTGTAAA-CTG
1 AGGGTAAAACAGTAATTCTGTAAATC-G
** *
72714975 AGGGTAAAATGGTAATTCTGTAAATTG
1 AGGGTAAAACAGTAATTCTGTAAATCG
** * **
72715002 AGGGTAAAATGGTAATTTTAAAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
72715029 AGGGTAAAAC-GATAATTCTGTAAATCG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
*
72715056 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
72715083 AG
1 AG
72715085 AGTACTTTGG
Statistics
Matches: 439, Mismatches: 62, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.02
27 426 0.97
28 6 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTCTGTAAATCG
Found at i:72715126 original size:108 final size:108
Alignment explanation
Indices: 72714543--72715079 Score: 733
Period size: 108 Copynumber: 5.0 Consensus size: 108
72714533 TTCACAATTA
* * ** ***
72714543 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA-CGATAATTTTGTAAACCAAGGGT-AAAC
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAG-TAATTTTACAAATTGAGGGTAAAAC
* * * *
72714606 CAGTAATTCTATAAATCGAGGGTAAAATAGTAATT-T-TACAAATCG
65 GA-TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTA-AACT-G
* * * * *
72714651 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAACTGAGGGTAAAATG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTACAAATTGAGGGTAAAACG
72714716 ATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAACTG
66 ATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAACTG
* *
72714759 ATGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTACAAATTGAGGGTAAAAC-
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTACAAATTGAGGGTAAAACG
*
72714823 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAACTA
66 A-TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAACTG
* *
72714867 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTACAAATTGAGGGTAAAACG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTACAAATTGAGGGTAAAACG
* *
72714932 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTG
66 ATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAACTG
* * * * *
72714975 AGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTAAAACG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTACAAATTGAGGGTAAAACG
*
72715040 ATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA
66 ATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA
72715080 TCGAGAGTAC
Statistics
Matches: 390, Mismatches: 33, Indels: 12
0.90 0.08 0.03
Matches are distributed among these distances:
107 1 0.00
108 378 0.97
109 9 0.02
110 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (108 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTACAAATTGAGGGTAAAACG
ATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAACTG
Found at i:72718650 original size:27 final size:27
Alignment explanation
Indices: 72718619--72718796 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72718609 TAAATTGTAC
72718619 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72718646 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72718672 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72718700 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72718728 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72718755 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72718782 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72718797 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72718733 original size:82 final size:81
Alignment explanation
Indices: 72718620--72718775 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72718610 AAATTGTACA
* *
72718620 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72718684 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72718701 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72718766 TGCGAGTTGA
65 TGCGAATTGA
72718776 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72718787 original size:82 final size:81
Alignment explanation
Indices: 72718616--72718796 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72718606 GATTAAATTG
* *
72718616 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72718681 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72718697 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72718761 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72718779 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72718797 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72723365 original size:8 final size:9
Alignment explanation
Indices: 72723342--72723366 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
72723332 TTTTTTACCC
72723342 TGTTTTTAA
1 TGTTTTTAA
72723351 TGTTTTTAA
1 TGTTTTTAA
72723360 TGTTTTT
1 TGTTTTT
72723367 GAGACCGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.72
Consensus pattern (9 bp):
TGTTTTTAA
Found at i:72729804 original size:165 final size:165
Alignment explanation
Indices: 72729508--72729823 Score: 461
Period size: 165 Copynumber: 1.9 Consensus size: 165
72729498 GTTAGTTATA
* *
72729508 GTTGGCATGCCATAGAATTGTGAGTCCTCATCCTTGTGTCTTGTGATTTGGGCATTCAGGCCCCG
1 GTTGGCATGCCATAGAATTGTGAGTCCTCACCCTTGTGTCTTGTGATTTGGGCATCCAGGCCCCG
* * * *
72729573 GGACAGTTTGGAGAGATAAGGGAATGTGAGCTAAGCTCCATTCACAGGGATATATTGGTATGTTG
66 AGACAATTTGAAGAGATAAGGGAATGTGAGCTAAGCTCCATTCACAGAGATATATTGGTATGTTG
72729638 GAGAGTGTTAACTATGTGCTAAATCGTTGGATATT
131 GAGAGTGTTAACTATGTGCTAAATCGTTGGATATT
* * * **
72729673 GTTGGCATGCCATAGGATTGTGAGTCCTCGCCCTTGTGTTTTGTGATTTGGGCATCCAGGCCTTG
1 GTTGGCATGCCATAGAATTGTGAGTCCTCACCCTTGTGTCTTGTGATTTGGGCATCCAGGCCCCG
* * ** * * *
72729738 AGACAATTTGAAGAGATAAGGGAATGTTATCTAAGCTTTATTCACTGAGATATGTTGGTGTGTTG
66 AGACAATTTGAAGAGATAAGGGAATGTGAGCTAAGCTCCATTCACAGAGATATATTGGTATGTTG
*
72729803 GAGAGTGTTAGCTATGTGCTA
131 GAGAGTGTTAACTATGTGCTA
72729824 CACTTTTGGG
Statistics
Matches: 132, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
165 132 1.00
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.34
Consensus pattern (165 bp):
GTTGGCATGCCATAGAATTGTGAGTCCTCACCCTTGTGTCTTGTGATTTGGGCATCCAGGCCCCG
AGACAATTTGAAGAGATAAGGGAATGTGAGCTAAGCTCCATTCACAGAGATATATTGGTATGTTG
GAGAGTGTTAACTATGTGCTAAATCGTTGGATATT
Found at i:72734917 original size:24 final size:24
Alignment explanation
Indices: 72734888--72734942 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
72734878 ATTTAAACAT
72734888 TGAATCAAGAATTTTAAAGTAAGA
1 TGAATCAAGAATTTTAAAGTAAGA
*
72734912 TGAATCAAGAATTTTAAAGTCAGA
1 TGAATCAAGAATTTTAAAGTAAGA
*
72734936 TAAATCA
1 TGAATCA
72734943 CAAACCCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.49, C:0.07, G:0.15, T:0.29
Consensus pattern (24 bp):
TGAATCAAGAATTTTAAAGTAAGA
Found at i:72735016 original size:3 final size:3
Alignment explanation
Indices: 72735008--72735042 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
72734998 AAATCTTTAA
72735008 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
72735043 AGGATCGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:72738461 original size:22 final size:22
Alignment explanation
Indices: 72738433--72738478 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
72738423 TACGACACTT
72738433 AGAGAATTTTTCATCAAAAGAG
1 AGAGAATTTTTCATCAAAAGAG
72738455 AGAGAATTTTTCATCAAAAGAG
1 AGAGAATTTTTCATCAAAAGAG
72738477 AG
1 AG
72738479 TCACACACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.09, G:0.20, T:0.26
Consensus pattern (22 bp):
AGAGAATTTTTCATCAAAAGAG
Found at i:72742902 original size:48 final size:49
Alignment explanation
Indices: 72742821--72742956 Score: 139
Period size: 50 Copynumber: 2.8 Consensus size: 49
72742811 AGGGTAAGGT
* * * *
72742821 GCCGACGCCATGTCCCAGACATAGTATTGCACTGGCTCAC-CCATCAAA
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTCACGACATCAAA
* * * * * * *
72742869 GTCGACGCCATGTCTCAGACATGGTCTTACACTGACTCTCGTATATCGAG
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTCACG-ACATCAAA
* *
72742919 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTC
72742957 TCATCTATCG
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
48 33 0.47
50 37 0.53
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (49 bp):
GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTCACGACATCAAA
Found at i:72742938 original size:50 final size:50
Alignment explanation
Indices: 72742875--72743015 Score: 187
Period size: 50 Copynumber: 2.8 Consensus size: 50
72742865 CAAAGTCGAC
* *
72742875 GCCATGTCTCAGACATGGTCTTACACT-GACTCTCGTATATCGAG-GCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATATCG-GTGCCGAT
*
72742925 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATCGGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGCCGAT
* * * *
72742975 GCCATGTTCGAGACATGTTCTTACTCTAGCTCTCATATATC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATC
72743016 CCTAGAATCG
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
49 1 0.01
50 79 0.98
51 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.30
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGCCGAT
Found at i:72745697 original size:15 final size:15
Alignment explanation
Indices: 72745662--72745706 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
72745652 CAGAGATAAC
*
72745662 AAGAAAACCAAG-TA
1 AAGAAATCCAAGATA
72745676 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
*
72745691 GAGAAATCCCAAGATA
1 AAGAAAT-CCAAGATA
72745707 TGATACTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 11 0.41
15 8 0.30
16 8 0.30
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:72748625 original size:26 final size:25
Alignment explanation
Indices: 72748593--72748663 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
72748583 CCTCTTTAAT
*
72748593 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
72748618 AACTTGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
72748643 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
72748664 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 32 0.76
26 10 0.24
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAGTA
Found at i:72753507 original size:49 final size:47
Alignment explanation
Indices: 72753460--72753615 Score: 231
Period size: 47 Copynumber: 3.3 Consensus size: 47
72753450 TGTGAGTGTA
72753460 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
72753507 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
72753554 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
72753601 TATAAATGTGATAAG
1 TATATATGTGATAAG
72753616 TCCCGAAGGG
Statistics
Matches: 97, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:72757931 original size:127 final size:127
Alignment explanation
Indices: 72757786--72758045 Score: 439
Period size: 127 Copynumber: 2.0 Consensus size: 127
72757776 TTTATTTATG
* * *
72757786 CATATTAACACCATGTAATGGTTCATTTTTGAAACTATCTTTTATAACTTAAAGAAATGGTTTGT
1 CATA-TAACACCATGTAATGGTTCATTTATGAAACTATCATTTATAACTTAAAGAAATGCTTTGT
*
72757851 CATGGTAACCAAACATATATACTACTAAATACATATGTTTCATACTTAGCAAAGAACGTAGGT
65 CATGGTAACCAAACATATATACTACTAAATACATATGTTTCAAACTTAGCAAAGAACGTAGGT
*
72757914 CATATAACACCATGTAATGGTTCATTTATGAAACTATCATTTATGACTTAAAGAAATGCTTTGTC
1 CATATAACACCATGTAATGGTTCATTTATGAAACTATCATTTATAACTTAAAGAAATGCTTTGTC
** *
72757979 ATGGTAACTGAACATATATACTATTAAATACATATGTTTCAAACTTAGCAAAGAACGTAGGT
66 ATGGTAACCAAACATATATACTACTAAATACATATGTTTCAAACTTAGCAAAGAACGTAGGT
72758041 CATAT
1 CATAT
72758046 CCGAATTACT
Statistics
Matches: 124, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
127 120 0.97
128 4 0.03
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (127 bp):
CATATAACACCATGTAATGGTTCATTTATGAAACTATCATTTATAACTTAAAGAAATGCTTTGTC
ATGGTAACCAAACATATATACTACTAAATACATATGTTTCAAACTTAGCAAAGAACGTAGGT
Found at i:72765661 original size:27 final size:27
Alignment explanation
Indices: 72765631--72765708 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
72765621 CTCATATCTG
* *
72765631 TAGGCTAGTATTACTGAAATACCCCTA
1 TAGGATAGAATTACTGAAATACCCCTA
* * *
72765658 TAGGATAGAATTACTCG-AATGCTCCTG
1 TAGGATAGAATTACT-GAAATACCCCTA
*
72765685 TAGGGTAGAATTACTGAAATACCC
1 TAGGATAGAATTACTGAAATACCC
72765709 TTGGTTTACA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (27 bp):
TAGGATAGAATTACTGAAATACCCCTA
Found at i:72765938 original size:81 final size:81
Alignment explanation
Indices: 72765853--72766034 Score: 199
Period size: 82 Copynumber: 2.2 Consensus size: 81
72765843 CTCGACCTGT
* ** *
72765853 AAAATTATCGAAATACCCTCTACATGT-AAAATTACCAAAATACCC-TCAATTTGTAAAATTACC
1 AAAATTATCGAAATACCCTCTA-AT-TAAAAATTACAAAAATACCCTTCAATTTCAAAAATTACA
* *
72765916 AAAATACCCCTAATTTGG
64 AAAATACCACTAATTTGC
* * *
72765934 AAAATTATCGAAATA-CCTTTAATTCAGAAAATTACAAAAATACCCTTGACTTTCAAAAATTACA
1 AAAATTATCGAAATACCCTCTAATT-A-AAAATTACAAAAATACCCTTCAATTTCAAAAATTACA
* **
72765998 AAAATACCATTGGTTTGC
64 AAAATACCACTAATTTGC
72766016 AAAATTATCGAAATACCCT
1 AAAATTATCGAAATACCCT
72766035 TGGCTTGTAG
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
78 1 0.01
79 2 0.02
80 5 0.06
81 32 0.38
82 41 0.49
83 3 0.04
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.29
Consensus pattern (81 bp):
AAAATTATCGAAATACCCTCTAATTAAAAATTACAAAAATACCCTTCAATTTCAAAAATTACAAA
AATACCACTAATTTGC
Found at i:72766037 original size:27 final size:26
Alignment explanation
Indices: 72765701--72766036 Score: 167
Period size: 27 Copynumber: 12.4 Consensus size: 26
72765691 AGAATTACTG
* * *
72765701 AAATACCCTTGGTTTACAAAATTACT
1 AAATACCCTTGATTTGCAAAATTACA
* * *
72765727 AAATACCATTGGTTTACAAAAATTAACA
1 AAATACCCTTGATTTGC-AAAATT-ACA
* *
72765755 AAATACCCTCGATTAGCAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTA-CA
* * *
72765782 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTA-CA
** *
72765809 AAATA-CCTATGATTTGTGAAATTACTG
1 AAATACCCT-TGATTTGCAAAATTAC-A
* * ** * *
72765836 AGATACCCTCGACCTGTAAAATTATCG
1 AAATACCCTTGATTTGCAAAATTA-CA
** *
72765863 AAATACCCTCT-ACATGTAAAATTACCA
1 AAATACCCT-TGATTTGCAAAATTA-CA
** *
72765890 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTA-CA
* * * *
72765917 AAATACCCCTAATTTGGAAAATTATCG
1 AAATACCCTTGATTTGCAAAATTA-CA
* * *
72765944 AAATACCTTTAATTCAG-AAAATTACAA
1 AAATACCCTTGATT-TGCAAAATTAC-A
72765971 AAATACCCTTGACTTT-CAAAAATTACAA
1 AAATACCCTTGA-TTTGC-AAAATTAC-A
* * *
72765999 AAATACCATTGGTTTGCAAAATTATCG
1 AAATACCCTTGATTTGCAAAATTA-CA
72766026 AAATACCCTTG
1 AAATACCCTTG
72766037 GCTTGTAGAT
Statistics
Matches: 249, Mismatches: 45, Indels: 31
0.77 0.14 0.10
Matches are distributed among these distances:
26 21 0.08
27 185 0.74
28 43 0.17
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (26 bp):
AAATACCCTTGATTTGCAAAATTACA
Found at i:72766350 original size:41 final size:41
Alignment explanation
Indices: 72766301--72766423 Score: 167
Period size: 41 Copynumber: 3.0 Consensus size: 41
72766291 GAAGGAAGAA
*
72766301 ATTAAGGATCGCATGGTTGCTTGACGATCGTGGATCTGCCG
1 ATTAAGGATCGCATGGTTGCTTGACGATCGTGGATCCGCCG
* * *
72766342 ATTGAGGATCGCATGGTTTCTTGACG-TCCGTGGATCCACCG
1 ATTAAGGATCGCATGGTTGCTTGACGAT-CGTGGATCCGCCG
* * *
72766383 ATTAAGGATCACATGGTTGCTTAACGATCATGGATCCGCCG
1 ATTAAGGATCGCATGGTTGCTTGACGATCGTGGATCCGCCG
72766424 GTGGCTTTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
40 1 0.01
41 68 0.97
42 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (41 bp):
ATTAAGGATCGCATGGTTGCTTGACGATCGTGGATCCGCCG
Found at i:72784465 original size:42 final size:42
Alignment explanation
Indices: 72784397--72784823 Score: 436
Period size: 42 Copynumber: 10.2 Consensus size: 42
72784387 AAGGAAAGCA
*
72784397 TTCATTGCATTTAGAGG-CTCAGGTGTGGAGGTTCATTCACTT
1 TTCATTGCATTTAGAGGAC-CAGGTGTGGAGGTCCATTCACTT
* * * *
72784439 TTCATTGCATTAAGAGGACCAAGTGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGACCAGGTGTGGAGGTCCATTCACTT
*
72784481 TTCATTGCATTCAGAGG-CCTAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGACC-AGGTGTGGAGGTCCATTCACTT
* * *
72784523 TTCATTACATTTAGA-GACCCAGGTGTGGAAGTCAATTCACTT
1 TTCATTGCATTTAGAGGA-CCAGGTGTGGAGGTCCATTCACTT
* * * * *
72784565 TTCATTGCATTTAGGGGCCCAAGCT-TGGAGGTCCATTTATTT
1 TTCATTGCATTTAGAGGACC-AGGTGTGGAGGTCCATTCACTT
* * *
72784607 TTCATTGCATGTAAAGGCCCAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGACCAGGTGTGGAGGTCCATTCACTT
* * *
72784649 TTCATTCCATTTAGA-GACCCAGGTGTAGAAGTCCATTCACTT
1 TTCATTGCATTTAGAGGA-CCAGGTGTGGAGGTCCATTCACTT
** *
72784691 TTCATTGCATTTAGA-GACCTAGGTGTATAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGACC-AGGTGTGGAGGTCCATTCACTT
* * * ** * *
72784733 TTCGTTGCATTTAGAGGCCCAAGTGTGGAGGTTAATTTATTT
1 TTCATTGCATTTAGAGGACCAGGTGTGGAGGTCCATTCACTT
* * * *
72784775 TTCATTGCATTTAAAGG-CGCAAGTGTTGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGAC-CAGGTGTGGAGGTCCATTCACTT
72784817 TTCATTG
1 TTCATTG
72784824 TATTGTATAT
Statistics
Matches: 325, Mismatches: 49, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
41 10 0.03
42 305 0.94
43 10 0.03
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGACCAGGTGTGGAGGTCCATTCACTT
Found at i:72784549 original size:84 final size:84
Alignment explanation
Indices: 72784397--72784823 Score: 489
Period size: 84 Copynumber: 5.1 Consensus size: 84
72784387 AAGGAAAGCA
* * * *
72784397 TTCATTGCATTTAGAGGCTCAGGTGTGGAGGTTCATTCACTTTTCATTGCATTAAGAGGA-CCAA
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGA-GACCCAG
*
72784461 GTGTGGAGGTTCATTTACTT
65 GTGTGGAGGTCCATTTACTT
* * *
72784481 TTCATTGCATTCAGAGGCCTAGGTGTGGAGGTCCATTCACTTTTCATTACATTTAGAGACCCAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
* * *
72784546 TGTGGAAGTCAATTCACTT
66 TGTGGAGGTCCATTTACTT
* * * * * * *
72784565 TTCATTGCATTTAGGGGCCCAAGCT-TGGAGGTCCATTTATTTTTCATTGCATGTAAAGGCCCAG
1 TTCATTGCATTTAGAGGCCC-AGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAG
*
72784629 GTGTGGAGGTCCATTCACTT
65 GTGTGGAGGTCCATTTACTT
* * * * *
72784649 TTCATTCCATTTAGAGACCCAGGTGTAGAAGTCCATTCACTTTTCATTGCATTTAGAGACCTAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
**
72784714 TGTATAGGTCCATTTACTT
66 TGTGGAGGTCCATTTACTT
* * ** * * * * * *
72784733 TTCGTTGCATTTAGAGGCCCAAGTGTGGAGGTTAATTTATTTTTCATTGCATTTAAAGGCGCAAG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
*
72784798 TGTTGAGGTCCATTTACTT
66 TGTGGAGGTCCATTTACTT
72784817 TTCATTG
1 TTCATTG
72784824 TATTGTATAT
Statistics
Matches: 284, Mismatches: 56, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
83 5 0.02
84 276 0.97
85 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (84 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
TGTGGAGGTCCATTTACTT
Found at i:72784625 original size:126 final size:125
Alignment explanation
Indices: 72784397--72784823 Score: 482
Period size: 126 Copynumber: 3.4 Consensus size: 125
72784387 AAGGAAAGCA
* * * * *
72784397 TTCATTGCATTTAGAGGCTCAGGTGTGGAGGTTCATTCACTTTTCATTGCATTAAGAGGACCAAG
1 TTCATTACATTTAGAGACCCAGGTGTGGAAG-TCATTCACTTTTCATTGCATTTAGAGGACCAAG
* * *
72784462 TGTGGAGGTTCATTTACTTTTCATTGCATTCAGAGGCCTAGGTGTGGAGGTCCATTCACTT
65 TGTGGAGGTCCATTTACTTTTCATTGCATTCAAAGGCCCAGGTGTGGAGGTCCATTCACTT
* *
72784523 TTCATTACATTTAGAGACCCAGGTGTGGAAGTCAATTCACTTTTCATTGCATTTAGGGGCCCAAG
1 TTCATTACATTTAGAGACCCAGGTGTGGAAGTC-ATTCACTTTTCATTGCATTTAGAGGACCAAG
*
72784588 CT-TGGAGGTCCATTTATTTTTCATTGCATGT-AAAGGCCCAGGTGTGGAGGTCCATTCACTT
65 -TGTGGAGGTCCATTTACTTTTCATTGCAT-TCAAAGGCCCAGGTGTGGAGGTCCATTCACTT
* * *
72784649 TTCATTCCATTTAGAGACCCAGGTGTAGAAGTCCATTCACTTTTCATTGCATTTAGA-GACCTAG
1 TTCATTACATTTAGAGACCCAGGTGTGGAAGT-CATTCACTTTTCATTGCATTTAGAGGACC-AA
** * * * * ** * *
72784713 GTGTATAGGTCCATTTACTTTTCGTTGCATTTAGAGGCCCAAGTGTGGAGGTTAATTTATTT
64 GTGTGGAGGTCCATTTACTTTTCATTGCATTCAAAGGCCCAGGTGTGGAGGTCCATTCACTT
* * * * * * * *
72784775 TTCATTGCATTTAAAGGCGCAAGTGTTGAGGTCCATTTACTTTTCATTG
1 TTCATTACATTTAGAGACCCAGGTGTGGAAGT-CATTCACTTTTCATTG
72784824 TATTGTATAT
Statistics
Matches: 260, Mismatches: 34, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
125 7 0.03
126 250 0.96
127 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (125 bp):
TTCATTACATTTAGAGACCCAGGTGTGGAAGTCATTCACTTTTCATTGCATTTAGAGGACCAAGT
GTGGAGGTCCATTTACTTTTCATTGCATTCAAAGGCCCAGGTGTGGAGGTCCATTCACTT
Found at i:72791141 original size:40 final size:40
Alignment explanation
Indices: 72791047--72791271 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
72791037 TATTCGAATG
* * *
72791047 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * * * * *
72791088 ATAACCGGACTAAGATCTGAAGGCGTTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
*
72791128 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
72791168 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
72791208 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
72791248 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
72791272 CTTGCGCAAG
Statistics
Matches: 156, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:72791227 original size:80 final size:80
Alignment explanation
Indices: 72791047--72791307 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
72791037 TATTCGAATG
* * * * *
72791047 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCTGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
* *
72791112 GTTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
72791128 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
72791193 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
72791208 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
72791273 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
72791287 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72791308 ATTACTTGAG
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.09
80 93 0.61
81 32 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:72791263 original size:120 final size:121
Alignment explanation
Indices: 72791047--72791271 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
72791037 TATTCGAATG
** * * *
72791047 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCTGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * *
72791112 GTTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
72791168 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
72791231 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
72791272 CTTGCGCAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.03
120 55 0.62
121 31 0.35
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:72811840 original size:37 final size:37
Alignment explanation
Indices: 72811790--72811868 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
72811780 TTATTACGAA
* * *
72811790 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
72811827 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
72811864 ATCTT
1 GTCTT
72811869 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:72812091 original size:47 final size:49
Alignment explanation
Indices: 72812002--72812201 Score: 237
Period size: 51 Copynumber: 4.1 Consensus size: 49
72811992 CACATTTATG
* * * * * * * *
72812002 CACTTTCACATCCATTACGTTGGCCACTCGGCCCTGTCAC-ATAT-ATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATAATA
* * *
72812049 CACTTTCACATTCATCACATCGGCTATTAGACCTTATTACATATATACATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATA-ATA
72812100 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATA-ATA
72812151 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATAT-ATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATAATA
72812198 CACT
1 CACT
72812202 CTCTTGGCTG
Statistics
Matches: 135, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
47 36 0.27
49 8 0.06
51 91 0.67
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATAATA
Found at i:72812107 original size:51 final size:51
Alignment explanation
Indices: 72812046--72812199 Score: 281
Period size: 51 Copynumber: 3.0 Consensus size: 51
72812036 TGTCACATAT
* * *
72812046 ATACACTTTCACATTCATCACATCGGCTATTAGACCTTATTACATATATAC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72812097 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72812148 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
72812199 A
1 A
72812200 CTCTCTTGGC
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 100 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.32
Consensus pattern (51 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:72819478 original size:27 final size:27
Alignment explanation
Indices: 72819448--72819632 Score: 176
Period size: 27 Copynumber: 6.9 Consensus size: 27
72819438 CTGCCTTACA
* **
72819448 AGGGTATTTTTGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*** * **
72819475 AGGGTAAAATGATAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
72819502 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
** **
72819529 AGGGTATTTCAGTAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
72819556 AGGGTATTTTAGTAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCG
*
72819582 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTACAAATCG
72819609 AGGGGTATTTTGGTAATTTTACAA
1 A-GGGTATTTTGGTAATTTTACAA
72819633 CTTATCCACT
Statistics
Matches: 134, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
26 2 0.01
27 132 0.99
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:72822225 original size:27 final size:27
Alignment explanation
Indices: 72822194--72822250 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
72822184 GATATCTTAG
72822194 AGTTTGTTTCTAGATGCTTGATCTATC
1 AGTTTGTTTCTAGATGCTTGATCTATC
72822221 AGTTTGTTTCTAGATGCTTGATCTATC
1 AGTTTGTTTCTAGATGCTTGATCTATC
72822248 AGT
1 AGT
72822251 AGGTAAAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.47
Consensus pattern (27 bp):
AGTTTGTTTCTAGATGCTTGATCTATC
Found at i:72823801 original size:27 final size:26
Alignment explanation
Indices: 72823752--72823839 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 26
72823742 AGCATGGCTG
** *
72823752 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
72823778 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* * *
72823805 CCATAATAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
72823832 CCAGAACA
1 CCAGAACA
72823840 CTTCCTCCAT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
26 11 0.21
27 41 0.79
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:72833845 original size:22 final size:23
Alignment explanation
Indices: 72833820--72833878 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
72833810 CAACCAAATC
72833820 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
72833842 AATTCATGCATATTTATAAGAT-
1 AATTCATACATATTTATAAGATA
72833864 AATGTCATCACATAT
1 AAT-TCAT-ACATAT
72833879 CTAAAACCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 9 0.29
23 16 0.52
24 6 0.19
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:72849288 original size:40 final size:40
Alignment explanation
Indices: 72849194--72849424 Score: 331
Period size: 40 Copynumber: 5.8 Consensus size: 40
72849184 TGGTTGAAAA
* ** * *
72849194 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
72849233 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
72849273 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
72849313 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
72849353 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
72849394 -CGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
72849425 AGTTATATCC
Statistics
Matches: 176, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 32 0.18
40 141 0.80
41 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:72853601 original size:40 final size:40
Alignment explanation
Indices: 72853523--72853746 Score: 301
Period size: 40 Copynumber: 5.5 Consensus size: 40
72853513 ACCCAAGTAT
* *
72853523 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
72853562 CTTCGGGTCTTAGCCTGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
72853602 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
72853642 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
72853685 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
72853725 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
72853747 CATCCGATTA
Statistics
Matches: 164, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 12 0.07
40 115 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:72853708 original size:83 final size:80
Alignment explanation
Indices: 72853523--72853746 Score: 301
Period size: 83 Copynumber: 2.8 Consensus size: 80
72853513 ACCCAAGTAT
* * * *
72853523 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCTGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
72853586 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
*
72853602 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
72853666 CAACTACTTGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
72853685 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
72853747 CATCCGATTA
Statistics
Matches: 129, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
79 13 0.10
80 48 0.37
81 1 0.01
83 67 0.52
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:72860916 original size:6 final size:6
Alignment explanation
Indices: 72860886--72860998 Score: 54
Period size: 6 Copynumber: 18.3 Consensus size: 6
72860876 AAGAAACATT
* * *
72860886 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
72860935 ATCAGA ATCAAA ATTAG- GTGACAGA ATTAGA ATCGGT ATCAGGTA AT-AGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
72860985 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
72860999 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 18, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
5 6 0.08
6 60 0.77
7 8 0.10
8 4 0.05
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:72860940 original size:25 final size:25
Alignment explanation
Indices: 72860907--72860998 Score: 121
Period size: 25 Copynumber: 3.7 Consensus size: 25
72860897 AATCAAAATG
72860907 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
72860932 AGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* * * * *
72860957 AGAATTAGAATCGGTATCAGGTAAT
1 AGAATCAGAATCAGAATCAGGTGAC
72860982 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
72860999 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:72861153 original size:27 final size:26
Alignment explanation
Indices: 72861115--72861222 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
72861105 AGCATGGCTG
*
72861115 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* * *
72861141 TCAGATATAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
72861168 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
72861195 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGACAGAGCCA
72861222 C
1 C
72861223 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 10 0.14
27 52 0.74
28 8 0.11
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:72861213 original size:54 final size:53
Alignment explanation
Indices: 72861115--72861222 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 53
72861105 AGCATGGCTG
* * * * * *
72861115 CCAGAACAGATATTGTGACAGAGTCATCAGATATAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
* *
72861168 CCAGAACAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
72861222 C
1 C
72861223 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
53 12 0.26
54 34 0.74
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCA
Found at i:72861409 original size:22 final size:22
Alignment explanation
Indices: 72861381--72861445 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
72861371 GCAAATACGT
*
72861381 TTGGCACACAACCATAATCAGG
1 TTGGCACAAAACCATAATCAGG
* * *
72861403 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAACCATAAT-CAGG
*
72861425 TTGGCGCAAAACCATAATCAG
1 TTGGCACAAAACCATAATCAG
72861446 AATAATTGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAACCATAATCAGG
Found at i:72861939 original size:26 final size:26
Alignment explanation
Indices: 72861834--72861946 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
72861824 GGGCAAAATG
* * *
72861834 GTAATTTTATCCTATAAGGGTATCTCG
1 GTAATTCTA-CCTATAAGGGTATTTCA
* *
72861861 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTA-CCTATAAGGGTATTTCA
*
72861888 GTATTTCTACCTTATAAGGGTATTTCA
1 GTAATTCTACC-TATAAGGGTATTTCA
* *
72861915 GTAACTCTACCTACAAGGGTATTTCA
1 GTAATTCTACCTATAAGGGTATTTCA
72861941 GTAATT
1 GTAATT
72861947 TTATAAATTG
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
26 21 0.28
27 53 0.72
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (26 bp):
GTAATTCTACCTATAAGGGTATTTCA
Found at i:72863505 original size:44 final size:42
Alignment explanation
Indices: 72863368--72863523 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 42
72863358 ACAATGCAAG
* * * * * *
72863368 CGTCCCAGACATGGTCTTACATGTAATCAAACATCAATGCCAT
1 CGTCCCAGACATGGTCTTACACGAAAACAGA-ATCGATGCCAA
** * * * *
72863411 TATCCCAGACAAGGTCTTACACGAAATCAG-ATACGATGTCGA
1 CGTCCCAGACATGGTCTTACACGAAAACAGAAT-CGATGCCAA
*
72863453 TGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCGATGCCAA
1 CGTCCCAGACATGGTCTTACACG-AAAACAGAA-TCGATGCCAA
*
72863497 CGTCCCAGACGTGGTCTTACACGAAAA
1 CGTCCCAGACATGGTCTTACACGAAAA
72863524 TACATATCGG
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
41 2 0.02
42 26 0.28
43 34 0.37
44 29 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (42 bp):
CGTCCCAGACATGGTCTTACACGAAAACAGAATCGATGCCAA
Found at i:72878696 original size:23 final size:21
Alignment explanation
Indices: 72878622--72878697 Score: 62
Period size: 24 Copynumber: 3.4 Consensus size: 21
72878612 CTGATAAACA
* *
72878622 GTAAGCTCTATTAATCTGAAAATG
1 GTAAGCTCTATGAAT-TG--AACG
* *
72878646 GTAAGCTCTATGAGTTGAACA
1 GTAAGCTCTATGAATTGAACG
*
72878667 GTAAGCTCTTTTGAATTGAATCG
1 GTAAGCTC-TATGAATTGAA-CG
72878690 GTAAGCTC
1 GTAAGCTC
72878698 CAATGAGCTA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
21 10 0.23
22 9 0.21
23 11 0.26
24 13 0.30
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (21 bp):
GTAAGCTCTATGAATTGAACG
Found at i:72878720 original size:46 final size:44
Alignment explanation
Indices: 72878616--72878722 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 44
72878606 ACTGAGCTGA
* * *
72878616 TAAACAGTAAGCTCTATTAATCTGAAAATGGTAAGCTCTATGAGT
1 TAAACAGTAAGCTCTTTTAATCTG-AAATGGTAAGCTCAATGAGC
*
72878661 TGAACAGTAAGCTCTTTTGAAT-TG-AATCGGTAAGCTCCAATGAGC
1 TAAACAGTAAGCTCTTTT-AATCTGAAAT-GGTAAGCT-CAATGAGC
72878706 TAAATCAGTAAGCTCTT
1 TAAA-CAGTAAGCTCTT
72878723 ACGAGCTATG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
43 3 0.06
44 8 0.15
45 27 0.51
46 15 0.28
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (44 bp):
TAAACAGTAAGCTCTTTTAATCTGAAATGGTAAGCTCAATGAGC
Found at i:72879817 original size:27 final size:26
Alignment explanation
Indices: 72879774--72879825 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
72879764 ATAATAGATC
* *
72879774 TCATATTTTACGCATTACGCGATTTAG
1 TCATATTTTACGAATTAAGC-ATTTAG
72879801 TCAT-TTTTACCGAATTAAGCATTTA
1 TCATATTTTA-CGAATTAAGCATTTA
72879826 ACAAGTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (26 bp):
TCATATTTTACGAATTAAGCATTTAG
Found at i:72880978 original size:27 final size:27
Alignment explanation
Indices: 72880948--72881003 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
72880938 GAGCATAATC
*
72880948 GTCATTCTAC-CATACAGGGGTATTACG
1 GTCATTCTACAC-TACAAGGGTATTACG
* *
72880975 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTCTACACTACAAGGGTATTACG
72881002 GT
1 GT
72881004 AATTTTGCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
GTCATTCTACACTACAAGGGTATTACG
Found at i:72883352 original size:27 final size:28
Alignment explanation
Indices: 72883293--72883355 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
72883283 CCATCACAAA
* *
72883293 AACAGTATCATGTGGGCCTTAGCCCAAT
1 AACAGAATCAGGTGGGCCTTAGCCCAAT
72883321 AACAGAATCAGGTGGG-CTTAAGCCCAAT
1 AACAGAATCAGGTGGGCCTT-AGCCCAAT
72883349 -ACAGAAT
1 AACAGAAT
72883356 AAGTATCAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 10 0.31
28 22 0.69
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTTAGCCCAAT
Found at i:72883805 original size:27 final size:27
Alignment explanation
Indices: 72883775--72883830 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
72883765 GAGCATGATC
*
72883775 GTCATTCTAC-CATATAGGGGTATTACG
1 GTCATTCTACAC-TATAAGGGTATTACG
* *
72883802 GTCATTTTACACTATAAGGGTATTTCG
1 GTCATTCTACACTATAAGGGTATTACG
72883829 GT
1 GT
72883831 GATTTTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (27 bp):
GTCATTCTACACTATAAGGGTATTACG
Found at i:72884420 original size:27 final size:28
Alignment explanation
Indices: 72884361--72884423 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
72884351 CCATCGCAGA
* *
72884361 AACAGTATCATGTGGGCCTTAGCCCAAT
1 AACAGAATCAGGTGGGCCTTAGCCCAAT
*
72884389 AACAGAATCAGGTGGG-CTTAAGTCCAAT
1 AACAGAATCAGGTGGGCCTT-AGCCCAAT
72884417 -ACAGAAT
1 AACAGAAT
72884424 TAGTATTAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 10 0.32
28 21 0.68
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTTAGCCCAAT
Found at i:72887782 original size:14 final size:15
Alignment explanation
Indices: 72887763--72887795 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
72887753 TCCTTACAGA
72887763 CCAATAC-TCAAGGC
1 CCAATACTTCAAGGC
*
72887777 CCAATACTTCTAGGC
1 CCAATACTTCAAGGC
72887792 CCAA
1 CCAA
72887796 ATTTGGGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.33, C:0.36, G:0.12, T:0.18
Consensus pattern (15 bp):
CCAATACTTCAAGGC
Found at i:72899707 original size:20 final size:18
Alignment explanation
Indices: 72899686--72899720 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72899676 TGTTCAGACA
*
72899686 CACAAGCGTGTGGGAGAT
1 CACACGCGTGTGGGAGAT
*
72899704 CACACGGGTGTGGGAGA
1 CACACGCGTGTGGGAGA
72899721 AGCGAACAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.17, G:0.43, T:0.14
Consensus pattern (18 bp):
CACACGCGTGTGGGAGAT
Found at i:72900393 original size:11 final size:10
Alignment explanation
Indices: 72900327--72900416 Score: 67
Period size: 10 Copynumber: 8.7 Consensus size: 10
72900317 ATTTTCTTGC
*
72900327 TTTTCTTTAT
1 TTTTATTTAT
*
72900337 TTTTCTTTAT
1 TTTTATTTAT
72900347 TTATT-TTTAT
1 TT-TTATTTAT
*
72900357 TTCTATTTCA-
1 TTTTATTT-AT
* *
72900367 TTCTCTTTAT
1 TTTTATTTAT
72900377 TTTTATTTAT
1 TTTTATTTAT
*
72900387 CTTTTATTAAT
1 -TTTTATTTAT
72900398 TCTTTATTTAT
1 T-TTTATTTAT
72900409 TTATTATT
1 TT-TTATT
72900417 ATGTGTTTGA
Statistics
Matches: 67, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
9 2 0.03
10 39 0.58
11 26 0.39
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTTATTTAT
Found at i:72908798 original size:15 final size:15
Alignment explanation
Indices: 72908778--72908807 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72908768 CAAAACTTGT
72908778 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
72908793 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
72908808 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:72911655 original size:6 final size:6
Alignment explanation
Indices: 72911644--72911702 Score: 66
Period size: 6 Copynumber: 9.5 Consensus size: 6
72911634 TCTGAGTCCA
* *
72911644 TTTATT TTTATT TTTA-T TTTATT TTTATT TTTGTT TTTAGTT TTGTTTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-TT TT-TATT
72911693 ATTTATT TTT
1 -TTTATT TTT
72911703 TGAAGACTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 5 0.11
6 28 0.62
7 9 0.20
8 3 0.07
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:72911703 original size:23 final size:23
Alignment explanation
Indices: 72911644--72911696 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
72911634 TCTGAGTCCA
*
72911644 TTTATTTTTATTTTTATTTTATT
1 TTTATTTTTATTTTTATTTTAGT
*
72911667 TTTATTTTTGTTTTTAGTTTT-GT
1 TTTATTTTTATTTTTA-TTTTAGT
72911690 TTTATTT
1 TTTATTT
72911697 ATTTTTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.13, C:0.00, G:0.06, T:0.81
Consensus pattern (23 bp):
TTTATTTTTATTTTTATTTTAGT
Found at i:72915787 original size:27 final size:26
Alignment explanation
Indices: 72915742--72915886 Score: 182
Period size: 27 Copynumber: 5.4 Consensus size: 26
72915732 GGTCATAATC
* * * *
72915742 GTCATTTTACCGTATAGGGATATTATG
1 GTCATTTTACCCTACAGGG-CATTACG
*
72915769 GTCATTTTACCCTACAGGGGCACTACG
1 GTCATTTTACCCTACA-GGGCATTACG
72915796 GTCATTTTACCCTACAGGGCATTACG
1 GTCATTTTACCCTACAGGGCATTACG
* *
72915822 TTCATTTTACCCTACAAGGGTATTACG
1 GTCATTTTACCCTAC-AGGGCATTACG
*
72915849 GTCATTTTACCCTACAAGGGCATTACA
1 GTCATTTTACCCTAC-AGGGCATTACG
72915876 GTCATTTTACC
1 GTCATTTTACC
72915887 TATTTTTGGG
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.22
27 79 0.75
28 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (26 bp):
GTCATTTTACCCTACAGGGCATTACG
Found at i:72915833 original size:53 final size:52
Alignment explanation
Indices: 72915742--72915886 Score: 182
Period size: 53 Copynumber: 2.7 Consensus size: 52
72915732 GGTCATAATC
* * * * *
72915742 GTCATTTTACCGTATAGGGATATTATGGTCATTTTACCCTACAGGGGCACTACG
1 GTCATTTTACCCTACAGGG-CATTA-CGTCATTTTACCCTACAAGGGCACTACG
* *
72915796 GTCATTTTACCCTACAGGGCATTACGTTCATTTTACCCTACAAGGGTATTACG
1 GTCATTTTACCCTACAGGGCATTACG-TCATTTTACCCTACAAGGGCACTACG
72915849 GTCATTTTACCCTACAAGGGCATTACAGTCATTTTACC
1 GTCATTTTACCCTAC-AGGGCATTAC-GTCATTTTACC
72915887 TATTTTTGGG
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
52 1 0.01
53 42 0.52
54 37 0.46
55 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (52 bp):
GTCATTTTACCCTACAGGGCATTACGTCATTTTACCCTACAAGGGCACTACG
Found at i:72916167 original size:20 final size:20
Alignment explanation
Indices: 72916121--72916179 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
72916111 GTGTGGGACC
72916121 CATGAGCCCA-TTCGGCCC-A
1 CATG-GCCCATTTCGGCCCAA
72916140 CATGGCCCATTTCGGCCCAA
1 CATGGCCCATTTCGGCCCAA
* **
72916160 CGTGGCCCATAACGGCCCAA
1 CATGGCCCATTTCGGCCCAA
72916180 GCCCATGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
18 5 0.14
19 12 0.34
20 18 0.51
ACGTcount: A:0.22, C:0.41, G:0.22, T:0.15
Consensus pattern (20 bp):
CATGGCCCATTTCGGCCCAA
Found at i:72920415 original size:19 final size:20
Alignment explanation
Indices: 72920391--72920428 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72920381 GGTACCACCA
72920391 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
72920410 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
72920429 ACCACCCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:72920824 original size:46 final size:46
Alignment explanation
Indices: 72920656--72920824 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
72920646 CGCCCCTAAG
* * * *
72920656 TGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* * * **
72920702 TGAACTCGGACTCGACTCAACGAGTTCGG--ATGC-CTAGTTACATTTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA-TAAA
* *
72920749 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
72920795 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
72920825 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 59 0.60
47 31 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:72928001 original size:19 final size:20
Alignment explanation
Indices: 72927977--72928014 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72927967 GGTACCACCA
72927977 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
72927996 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
72928015 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:72928309 original size:46 final size:46
Alignment explanation
Indices: 72928242--72928412 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
72928232 CGCCCCTAAG
* *
72928242 TGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCATACA
1 TGAACTCGGACTCAACTCAACGAGTTC-GGATGTTAGCATCCATACA
* * ** *
72928288 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACTTTTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG-TTAGCAT-CCATACA
* ** *
72928335 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATA-A
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATACA
72928380 GTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 -TGAACTCGGACTCAACTCAACGAGTTCGGATG
72928413 CTCAACCATC
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 3 0.03
46 62 0.61
47 36 0.36
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATACA
Found at i:72928402 original size:93 final size:93
Alignment explanation
Indices: 72928243--72928413 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
72928233 GCCCCTAAGT
**
72928243 GAACTCGGACTCAACTCAACGAGCTCAGGTGTTCGCATCCATACATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATACATGAACTCGGACTCAACTCAA
72928308 CGAGTTCGGATGCCTAGTTACTTTTCAC
66 CGAGTTCGGATGCCTAGTTACTTTTCAC
* *
72928336 GAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATA-AGTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATACA-TGAACTCGGACTCAACTC
72928399 AACGAGTTCGGATGC
64 AACGAGTTCGGATGC
72928414 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 3 0.04
93 69 0.96
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATACATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACTTTTCAC
Found at i:72932451 original size:28 final size:28
Alignment explanation
Indices: 72932419--72932504 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
72932409 TACCTATATC
*
72932419 TGGCCCATTAAGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
72932447 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
** * *
72932476 TGGCCTGTTAGGCACAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
72932504 T
1 T
72932505 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 26 0.52
29 24 0.48
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:72932747 original size:24 final size:24
Alignment explanation
Indices: 72932720--72932765 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
72932710 CAAACTTTCA
* *
72932720 GCTTTTCGGTATTTTAGCTTTTTG
1 GCTTTTCGGCATTTCAGCTTTTTG
*
72932744 GCTTTTTGGCATTTCAGCTTTT
1 GCTTTTCGGCATTTCAGCTTTT
72932766 GCCGATACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.09, C:0.15, G:0.20, T:0.57
Consensus pattern (24 bp):
GCTTTTCGGCATTTCAGCTTTTTG
Found at i:72936747 original size:56 final size:56
Alignment explanation
Indices: 72936649--72936757 Score: 137
Period size: 56 Copynumber: 1.9 Consensus size: 56
72936639 GATGGCTTCA
* * *
72936649 ATATATATGTACGAGTAAGACCACGTTTAATACGTTGACATCGATATGGGATTTTG
1 ATATATATGTACGAGTAAGACCACGTCTAAGACATTGACATCGATATGGGATTTTG
* * ** * *
72936705 ATATATGTGTGCGAGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATT
1 ATATATATGTACGAGTAAGACCACGTCTAAGACATTGACATCGATATGGGATT
72936758 ACATGTAAGA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 44 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (56 bp):
ATATATATGTACGAGTAAGACCACGTCTAAGACATTGACATCGATATGGGATTTTG
Found at i:72943141 original size:46 final size:45
Alignment explanation
Indices: 72943074--72943239 Score: 181
Period size: 46 Copynumber: 3.6 Consensus size: 45
72943064 TGTAACCCGC
72943074 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGC-TTCGCAT
* * * *
72943120 CCATAAGTGAACTCGGACTCAACTCAATGAGCTTGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG--GCTTCGCAT
* *** * * *
72943166 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAATGAGCTCGGGC-TTCGCAT
72943213 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
72943240 CGAGTTTGGA
Statistics
Matches: 96, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 61 0.64
47 32 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCTTCGCAT
Found at i:72943210 original size:93 final size:93
Alignment explanation
Indices: 72943082--72943253 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
72943072 GCCCATAAGT
* * *
72943082 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72943147 TGAGCTTGGATGCCTAGTTACATCTCTC
66 CGAGCTTGGATGCCTAGTTACATCTCTC
*
72943175 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72943240 CGAGTTTGGATGCC
66 CGAGCTTGGATGCC
72943254 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTTGGATGCCTAGTTACATCTCTC
Found at i:72943268 original size:46 final size:46
Alignment explanation
Indices: 72943125--72943268 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 46
72943115 CGCATCCATA
* * *
72943125 AGTGAACTCGGACTCAACTCAATGAGCTTGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCA--TACATC-CT
* * * * * *
72943174 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTTGG--ATGCCCATACATCCT
*
72943218 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCATACATCCT
72943264 AGTGA
1 AGTGA
72943269 CATGTCACTT
Statistics
Matches: 73, Mismatches: 16, Indels: 15
0.70 0.15 0.14
Matches are distributed among these distances:
44 8 0.11
46 32 0.44
47 29 0.40
49 4 0.05
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCATACATCCT
Found at i:72950614 original size:56 final size:54
Alignment explanation
Indices: 72950501--72950647 Score: 152
Period size: 56 Copynumber: 2.6 Consensus size: 54
72950491 GACATAGCAC
* * * * *
72950501 GCCTCTCAACAGGGCTACATATGAGCACCCAGACCTAGCTTGCATCACATTACCAT
1 GCCTCTCAACAGGGCTACATA--AGCTCCCGGACCTAACGTGCACCACATTACCAT
*
72950557 GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAACGTGTACCACATAATTA-CAT
1 GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAACGTGCACCAC---ATTACCAT
* * * *
72950613 GCCTCTCAACGGGGCAACACAAGCTCCCGAACCTA
1 GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTA
72950648 GCATGTATCA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
54 19 0.24
56 55 0.71
57 4 0.05
ACGTcount: A:0.29, C:0.35, G:0.17, T:0.19
Consensus pattern (54 bp):
GCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAACGTGCACCACATTACCAT
Found at i:72959467 original size:56 final size:55
Alignment explanation
Indices: 72959400--72959559 Score: 164
Period size: 56 Copynumber: 2.9 Consensus size: 55
72959390 CATGACATAG
* *
72959400 CACGCCTCTCAACAGGGCTACATATGAGCACCCGGACCTAGCATGCATCAC-ATTA
1 CACGCCTCTCAACAGGGCTACATAT-AGCTCCCGGACCTAGCATGTATCACAATTA
* * * * * *
72959455 CCACGCCTCTCAACAAGTCTATATA-AGCTCCTGGACCTAGCGTGTACCACATAATTA
1 -CACGCCTCTCAACAGGGCTACATATAGCTCCCGGACCTAGCATGTATCAC--AATTA
* * *
72959512 CATGCCTCTCAACGGGGCTACACA-AGCTCCCGGACCTAGCATGTATCA
1 CACGCCTCTCAACAGGGCTACATATAGCTCCCGGACCTAGCATGTATCA
72959560 TGTTATCAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
54 20 0.24
56 60 0.71
57 4 0.05
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (55 bp):
CACGCCTCTCAACAGGGCTACATATAGCTCCCGGACCTAGCATGTATCACAATTA
Found at i:72967086 original size:43 final size:42
Alignment explanation
Indices: 72967023--72967119 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 42
72967013 CATAAGCTCG
* * * *
72967023 TACAATGCCAATGTCTCAGACGTGGTCTTACAGGTAATCAAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA
*
72967065 TATCAATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA
*
72967108 TACGATGCCAAT
1 TACAATGCCAAT
72967120 TGATACGTGA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 10 0.21
43 37 0.79
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA
Found at i:72968542 original size:44 final size:44
Alignment explanation
Indices: 72968492--72968606 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
72968482 CGGTTTATCA
* * * *
72968492 CCAATGTCCCAGACATGGTCTCACATGTAAATCCCAAATCGATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAAATCACAAATCAATG
* * * * *
72968536 CCAATGTCCTAGATGTGATCTTACACGTAATTCACAAATCAATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAAATCACAAATCAATG
72968580 CCAATGTCCCAGACGTGGTCTTACATG
1 CCAATGTCCCAGACGTGGTCTTACATG
72968607 ATAACACATA
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (44 bp):
CCAATGTCCCAGACGTGGTCTTACATGTAAATCACAAATCAATG
Found at i:72978588 original size:43 final size:44
Alignment explanation
Indices: 72978468--72978626 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 44
72978458 AGCTCATACA
* * *
72978468 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* * * * ** *
72978511 ATGCCACTATCCTATACCGGGTCTTACAC-AAAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
*
72978553 ATGCCAATGTCCCAGACATGCTCTTACACGTAAATCACAA-ATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AATATCG
*
72978597 ATGCCAATGTCCCAGGCATGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
72978627 ATAACACATA
Statistics
Matches: 93, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
42 24 0.26
43 37 0.40
44 32 0.34
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:72978602 original size:44 final size:44
Alignment explanation
Indices: 72978468--72978626 Score: 157
Period size: 44 Copynumber: 3.7 Consensus size: 44
72978458 AGCTCATACA
* * *
72978468 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCG
* * * * ** *
72978511 ATGCCACTATCCTATACCGGGTCTTACAC-AAAAT--CAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAAT-CG
*
72978553 ATGCCAATGTCCCAGACATGCTCTTACACGTAAATCACAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
*
72978597 ATGCCAATGTCCCAGGCATGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
72978627 ATAACACATA
Statistics
Matches: 91, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.02
42 26 0.29
43 28 0.31
44 30 0.33
45 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
Found at i:72987142 original size:56 final size:56
Alignment explanation
Indices: 72987056--72987191 Score: 211
Period size: 56 Copynumber: 2.4 Consensus size: 56
72987046 ACCATGGCAT
72987056 CGATATATGTGTGC-AGGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGA-GTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
* **
72987112 CGATATATGTGTCCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
* *
72987168 TGATTTATGTGTGCGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
72987192 TTGTCTGGGA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
56 72 0.99
57 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.33
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
Found at i:72991221 original size:50 final size:50
Alignment explanation
Indices: 72991118--72991406 Score: 285
Period size: 50 Copynumber: 5.7 Consensus size: 50
72991108 ACCGAAGCTC
* * * ** * *
72991118 TCTGATACAGATAGTATCCTGCACTTAGTACTACACATACGACCAAATAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
72991168 TCTGGTACACGTAGAAGCCTGCACTTAGTACTACACATGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * * *
72991218 TCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * *
72991269 TCGGGTACGCATAGTAGCCTGCACTTAGTACGACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
72991319 TCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
72991368 -CTGTCTTAAATACATAGTAGCCTGCACATAGTACTACAC
1 TCTG--GT--ACACATAGTAGCCTGCACTTAGTACTACAC
72991407 GTGTTCTCAC
Statistics
Matches: 197, Mismatches: 37, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
48 2 0.01
49 2 0.01
50 126 0.64
51 39 0.20
52 28 0.14
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:72991407 original size:151 final size:150
Alignment explanation
Indices: 72991128--72991409 Score: 377
Period size: 151 Copynumber: 1.9 Consensus size: 150
72991118 TCTGATACAG
* * * * *
72991128 ATAGTATCCTGCACTTAGTACTACACATACGACCAAATAATCTGGTACACGTAGAAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACGACACATACGACCAAACAATCCGGTACACATAGAAGCCTGCACT
* * * *
72991193 TAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGT
66 TAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTA-ACACGT
72991258 GATCGAAGCTATCGGGTACGC
130 GATCGAAGCTATCGGGTACGC
* * *
72991279 ATAGTAGCCTGCACTTAGTACGACACATGCGACCTAACAATCCGGTACACATAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACGACACATACGACCAAACAATCCGGTACACATAGAAGCCTGCACT
** * * *
72991344 TAGTACTACACACGTGACCTAAAACTGTCTTAAATACATAGTAGCCTGCACATAGTACT-ACACG
66 TAGTACTACACACGTGACCT--AACCATCTGAAACACATAGTAGCCTACACATAGTACTAACACG
72991408 TG
129 TG
72991410 TTCTCACAAC
Statistics
Matches: 112, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
151 83 0.74
153 29 0.26
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (150 bp):
ATAGTAGCCTGCACTTAGTACGACACATACGACCAAACAATCCGGTACACATAGAAGCCTGCACT
TAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTAACACGTG
ATCGAAGCTATCGGGTACGC
Found at i:72993226 original size:49 final size:48
Alignment explanation
Indices: 72993085--72993228 Score: 166
Period size: 49 Copynumber: 2.9 Consensus size: 48
72993075 TCTATTGTGA
*
72993085 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATA-CC--AAACTGT
* * * *
72993136 GATCACGTGTGTAGTACTAAGTGCAGGCTACTA--CATGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCA--TACCAAACTG-T
*
72993185 GGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCATACCAAA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAAA
72993229 TAGCTTCGGC
Statistics
Matches: 78, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
48 5 0.06
49 37 0.47
50 2 0.03
51 34 0.44
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAAACTGT
Found at i:73001812 original size:28 final size:27
Alignment explanation
Indices: 73001755--73001906 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
73001745 TAAATTGTGC
*
73001755 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
73001782 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
73001810 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
73001837 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
73001865 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
73001892 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73001907 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:73001822 original size:55 final size:55
Alignment explanation
Indices: 73001755--73001906 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
73001745 TAAATTGTGC
*
73001755 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
73001810 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
73001865 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
73001907 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:73003547 original size:18 final size:17
Alignment explanation
Indices: 73003521--73003560 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
73003511 CATAATACAG
*
73003521 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAA
*
73003539 GCCCGTGTGGCCCACAA
1 GCCCATGTGGCCCACAA
73003556 GCCCA
1 GCCCA
73003561 AATCTGGCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.17, C:0.45, G:0.28, T:0.10
Consensus pattern (17 bp):
GCCCATGTGGCCCACAA
Found at i:73011455 original size:27 final size:26
Alignment explanation
Indices: 73011408--73011458 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
73011398 CGAGGCTACT
*
73011408 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
73011434 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
73011459 TTGTAGTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:73015396 original size:34 final size:34
Alignment explanation
Indices: 73015350--73015422 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
73015340 GCATTTCTGT
*
73015350 TACTGTTACTGTAATGGGTTAAGGCCC-ACACTGA
1 TACTGTTACTGTAATGGGCTAAGGCCCTA-ACTGA
* *
73015384 TACTGTTGCTGTAATGGGCTATGGCCCTAACTGA
1 TACTGTTACTGTAATGGGCTAAGGCCCTAACTGA
73015418 TACTG
1 TACTG
73015423 GACTGCCACT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
34 34 0.97
35 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (34 bp):
TACTGTTACTGTAATGGGCTAAGGCCCTAACTGA
Found at i:73016958 original size:40 final size:40
Alignment explanation
Indices: 73016882--73016986 Score: 158
Period size: 40 Copynumber: 2.6 Consensus size: 40
73016872 ATTGACAACA
*
73016882 TTCGGCTATGTACGGCAC-TAGTGTGCGATTCAAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
* *
73016921 TTCGGCTATGTGTGGCACTTAGTGTGCGATTCGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
* *
73016961 TTCAGCTATGTATGACACTTAGTGTG
1 TTCGGCTATGTATGGCACTTAGTGTG
73016987 AAAGAATTCG
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.27
40 43 0.73
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
Found at i:73018054 original size:12 final size:12
Alignment explanation
Indices: 73018037--73018071 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
73018027 ACAGGTTTGG
73018037 CACGGCCTAGCA
1 CACGGCCTAGCA
*
73018049 CACGGCCTAACA
1 CACGGCCTAGCA
*
73018061 CACGGGCTAGC
1 CACGGCCTAGC
73018072 CACATGAGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.40, G:0.26, T:0.09
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:73024405 original size:15 final size:15
Alignment explanation
Indices: 73024387--73024424 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
73024377 TTCTTAAAAA
73024387 TAAAAATAATTTTTT
1 TAAAAATAATTTTTT
73024402 TAAAAGAT-ATTTTTT
1 TAAAA-ATAATTTTTT
*
73024417 AAAAAATA
1 TAAAAATA
73024425 TATATTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
14 2 0.10
15 16 0.80
16 2 0.10
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (15 bp):
TAAAAATAATTTTTT
Found at i:73025257 original size:14 final size:14
Alignment explanation
Indices: 73025231--73025260 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
73025221 AAACACTTGG
73025231 TGTGTGTTATTTTT
1 TGTGTGTTATTTTT
73025245 TGTG-GTTATTTTT
1 TGTGTGTTATTTTT
73025258 TGT
1 TGT
73025261 TTTGTTCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.07, C:0.00, G:0.23, T:0.70
Consensus pattern (14 bp):
TGTGTGTTATTTTT
Found at i:73028054 original size:12 final size:12
Alignment explanation
Indices: 73028037--73028061 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73028027 TTAGTCTTTG
73028037 AACTAGAAACTA
1 AACTAGAAACTA
73028049 AACTAGAAACTA
1 AACTAGAAACTA
73028061 A
1 A
73028062 GTAAAATCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AACTAGAAACTA
Found at i:73029553 original size:20 final size:20
Alignment explanation
Indices: 73029525--73029577 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
73029515 ATAAAACATG
73029525 AGTAATTAAACTAATTAATA
1 AGTAATTAAACTAATTAATA
* *
73029545 AGTAGTTAAACTAATTAATC
1 AGTAATTAAACTAATTAATA
* *
73029565 ATTAATAAAACTA
1 AGTAATTAAACTA
73029578 TATAATCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.53, C:0.08, G:0.06, T:0.34
Consensus pattern (20 bp):
AGTAATTAAACTAATTAATA
Found at i:73029864 original size:22 final size:20
Alignment explanation
Indices: 73029823--73029864 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
73029813 CTATTATTGA
*
73029823 GAAATTGAAGAATTAGGCTT
1 GAAATTGAAGAATTAAGCTT
73029843 GAAATTGATAGAAGTTAAGCTT
1 GAAATTGA-AGAA-TTAAGCTT
73029865 AGATTATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 4 0.21
22 7 0.37
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (20 bp):
GAAATTGAAGAATTAAGCTT
Found at i:73035379 original size:14 final size:14
Alignment explanation
Indices: 73035360--73035390 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
73035350 TTTTCTTGGC
*
73035360 CGGTTCGGTTTAAT
1 CGGTTCAGTTTAAT
73035374 CGGTTCAGTTTAAT
1 CGGTTCAGTTTAAT
73035388 CGG
1 CGG
73035391 ACCATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.16, G:0.29, T:0.39
Consensus pattern (14 bp):
CGGTTCAGTTTAAT
Found at i:73044721 original size:47 final size:47
Alignment explanation
Indices: 73044668--73045150 Score: 759
Period size: 47 Copynumber: 10.3 Consensus size: 47
73044658 ACAAGATATG
*
73044668 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
73044715 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
73044762 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
73044809 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
73044856 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
73044903 TATATGTGACAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
73044950 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
73044997 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
73045044 TATATGAGATAAGACCTAATGACCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
73045091 TATATGTGATAAGGCCCAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
73045138 TAAATGTGATAAG
1 TATATGTGATAAG
73045151 TCCCGAAGGG
Statistics
Matches: 400, Mismatches: 36, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 400 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:73051361 original size:16 final size:16
Alignment explanation
Indices: 73051340--73051372 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
73051330 CTGTAATGCC
73051340 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
73051356 CCAAAAATCCTGAAAT
1 CCAAAAATCCCGAAAT
73051372 C
1 C
73051373 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:73054743 original size:9 final size:9
Alignment explanation
Indices: 73054729--73054755 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
73054719 GATCTTTAAG
73054729 GGCGTGGCT
1 GGCGTGGCT
73054738 GGCGTGGCT
1 GGCGTGGCT
73054747 GGCGTGGCT
1 GGCGTGGCT
73054756 CCTAACGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.00, C:0.22, G:0.56, T:0.22
Consensus pattern (9 bp):
GGCGTGGCT
Done.