Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 225 of 316
Found at i:73824083 original size:94 final size:94
Alignment explanation
Indices: 73823953--73824137 Score: 237
Period size: 94 Copynumber: 2.0 Consensus size: 94
73823943 TTGTAAAACT
* * * *
73823953 TTAGCTCGACTATGACAACATCTGGAGTCTTCCAGGATAATAAACATGGGGTAGTCCACCAGGAC
1 TTAGCTCAACTATGACAACATCTAGAGTCTTCCAGGATAATAAACATGGGATAGTCCACCAAGAC
*
73824018 ATTAAACATGGGGTTACATGTATAAGCCC
66 ATTAAACATAGGGTTACATGTATAAGCCC
* * * * * *
73824047 TTAGCTCAACTATGGCAACATGTAGAGTCTAT-CAGGATAGTAAACATGTGATAGTTCACTAAGA
1 TTAGCTCAACTATGACAACATCTAGAGTCT-TCCAGGATAATAAACATGGGATAGTCCACCAAGA
* *
73824111 CATTAAATATAGGGTTACATGTGTAAG
65 CATTAAACATAGGGTTACATGTATAAG
73824138 ACCATAGTTC
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
94 76 0.99
95 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (94 bp):
TTAGCTCAACTATGACAACATCTAGAGTCTTCCAGGATAATAAACATGGGATAGTCCACCAAGAC
ATTAAACATAGGGTTACATGTATAAGCCC
Found at i:73825867 original size:48 final size:49
Alignment explanation
Indices: 73825733--73825867 Score: 173
Period size: 50 Copynumber: 2.8 Consensus size: 49
73825723 AGGGTTATGT
* *
73825733 GTGATCCCATGTAAAACCATGTCTGGGACATGGCATTGGCATCGATATA
1 GTGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
* * *
73825782 TGTGATCTCATGTAAGACCATATATGGGATATGGCATTGGCATCGATATA
1 -GTGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
* * * *
73825832 -TGATTTCGTGTAAGACCATGTCTAGGACATTGCATT
1 GTGATCTCATGTAAGACCATGTCTGGGACATGGCATT
73825868 AATATGAGAC
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 29 0.40
50 44 0.60
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (49 bp):
GTGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
Found at i:73826816 original size:16 final size:16
Alignment explanation
Indices: 73826795--73826833 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
73826785 CGCCGGAGAT
*
73826795 GCTATCACACTGTCAA
1 GCTATCACACTATCAA
73826811 GCTATCACACTATCAA
1 GCTATCACACTATCAA
73826827 GCTATCA
1 GCTATCA
73826834 TGTTGGGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.33, C:0.31, G:0.10, T:0.26
Consensus pattern (16 bp):
GCTATCACACTATCAA
Found at i:73827612 original size:21 final size:20
Alignment explanation
Indices: 73827578--73827616 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
73827568 TTTCATGATG
73827578 AAAGTTTTCTAAGTCTCTCCA
1 AAAGTTTTCTAAGT-TCTCCA
73827599 AAAGTTTT-TAAAGTTCTC
1 AAAGTTTTCT-AAGTTCTC
73827617 GGTTTAGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (20 bp):
AAAGTTTTCTAAGTTCTCCA
Found at i:73829539 original size:27 final size:27
Alignment explanation
Indices: 73829508--73829685 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73829498 TAAATTGTGC
73829508 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73829535 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73829561 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73829589 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73829617 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73829644 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73829671 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73829686 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73829622 original size:82 final size:81
Alignment explanation
Indices: 73829509--73829664 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73829499 AAATTGTGCA
* *
73829509 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73829573 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73829590 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73829655 TGCGAGTTGA
65 TGCGAATTGA
73829665 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73829676 original size:82 final size:81
Alignment explanation
Indices: 73829507--73829685 Score: 225
Period size: 82 Copynumber: 2.2 Consensus size: 81
73829497 TTAAATTGTG
* *
73829507 CAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
73829572 GTGCGAATTGACCATG
66 GTGCGAATTGACCATA
* ** *
73829588 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAA
1 CAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAA
* **
73829652 GTGTGCGAGTTGATTATA
64 GTGTGCGAATTGACCATA
* *
73829670 TAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCG
73829686 GACTCAATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
CAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGACCATA
Found at i:73832769 original size:48 final size:48
Alignment explanation
Indices: 73832623--73832985 Score: 243
Period size: 48 Copynumber: 7.6 Consensus size: 48
73832613 TGTGTACTAG
* *
73832623 TGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGGCACATTATGAGAGCCAA
* ** *** * * *
73832671 TGTAGGACCATGTCTGGGACATTTCATCGGCGTTGA-TATGTGTGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGG-GCACATTATGAGAGCCAA
* * * *
73832719 TGTAATACCATATCTTGGACATGGCATTGGGCACATTATGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGGCACATTATGAGAGCCAA
* * *** * * *
73832767 TGTAAGACCATGTTTGGGACATGGCATCAGCGTTGA-TAT-ATGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GGGCACATTATGA-GAGCCAA
* * * * * *
73832815 TGTAAAACCAAGTCTAGGACATGGCATCAGCCACATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGGCACATTATGAGAGCCAA
* * * * * *
73832863 TATAAGACCATGTCTGGGACATGGAAAC-GGCA-TTGATATGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGGCACAT--TATGAGAGCCAA
* * * * * * *
73832911 TATAAGACCATGTTTGGGACATGGCATCGGCCTCGA-CATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGGCAC-ATTATGAGAGCCAA
*
73832959 TGTAAGACCATGTCTAGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
73832986 AGGCAATTTA
Statistics
Matches: 235, Mismatches: 69, Indels: 22
0.72 0.21 0.07
Matches are distributed among these distances:
46 1 0.00
47 7 0.03
48 220 0.94
49 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGGCACATTATGAGAGCCAA
Found at i:73832776 original size:96 final size:96
Alignment explanation
Indices: 73832608--73832985 Score: 409
Period size: 96 Copynumber: 3.9 Consensus size: 96
73832598 GACAATTTGG
* * * *
73832608 TGATATGTGTACTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCCAATG
1 TGATATGTGTGCTAGTGTAAAACCATATCTAGGACATGGCATCAGCCACATTATGAGAGCCAATG
* ** *
73832673 TAGGACCATGTCTGGGACATTTCATCGGCGT
66 TAAGACCATGTCTGGGACATGGCATCAGCGT
* * * ** *
73832704 TGATATGTGTGCTAATGTAATACCATATCTTGGACATGGCATTGGGCACATTATGAGAGCCAATG
1 TGATATGTGTGCTAGTGTAAAACCATATCTAGGACATGGCATCAGCCACATTATGAGAGCCAATG
*
73832769 TAAGACCATGTTTGGGACATGGCATCAGCGT
66 TAAGACCATGTCTGGGACATGGCATCAGCGT
* *
73832800 TGATATATGTGCTAGTGTAAAACCA-AGTCTAGGACATGGCATCAGCCACATTATGAGAGCCAGT
1 TGATATGTGTGCTAGTGTAAAACCATA-TCTAGGACATGGCATCAGCCACATTATGAGAGCCAAT
* * * * *
73832864 ATAAGACCATGTCTGGGACATGGAAACGGCAT
65 GTAAGACCATGTCTGGGACATGGCATCAGCGT
* * * * * * * * * * * *
73832896 TGATATGAGAGCTAGTATAAGACCATGTTTGGGACATGGCATCGGCCTCGA-CATGTGAGCCAGT
1 TGATATGTGTGCTAGTGTAAAACCATATCTAGGACATGGCATCAGCCAC-ATTATGAGAGCCAAT
*
73832960 GTAAGACCATGTCTAGGACATGGCAT
65 GTAAGACCATGTCTGGGACATGGCAT
73832986 AGGCAATTTA
Statistics
Matches: 236, Mismatches: 43, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
95 1 0.00
96 234 0.99
97 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (96 bp):
TGATATGTGTGCTAGTGTAAAACCATATCTAGGACATGGCATCAGCCACATTATGAGAGCCAATG
TAAGACCATGTCTGGGACATGGCATCAGCGT
Found at i:73835624 original size:31 final size:31
Alignment explanation
Indices: 73835588--73835650 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
73835578 GCTATAAGCA
73835588 AGGTGACCTCTTCAGGTGCCAGCGAAGGGCC
1 AGGTGACCTCTTCAGGTGCCAGCGAAGGGCC
73835619 AGGTGACCTCTTCAGGTGCCAGCGAAGGGCC
1 AGGTGACCTCTTCAGGTGCCAGCGAAGGGCC
73835650 A
1 A
73835651 CCAAACTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.21, C:0.29, G:0.35, T:0.16
Consensus pattern (31 bp):
AGGTGACCTCTTCAGGTGCCAGCGAAGGGCC
Found at i:73842970 original size:126 final size:126
Alignment explanation
Indices: 73842740--73843121 Score: 631
Period size: 126 Copynumber: 3.0 Consensus size: 126
73842730 TTTCTGCAAG
** *
73842740 AATAATTCTGACCAGACGTTTCTGGAA-AAATAGTGTCGGAAAACGCTTCAAGCAGGATGCACTG
1 AATAATTCTGAGTAGACGTTTCT-GAACAAATAGTG-CCGAAAACGCTTCAAGCAGGATGCACTG
73842804 TCAGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
64 TCAGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
73842867 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGTACTGTT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
* ** *
73842932 AGCAAAATTTCTGGAAAAAGCTCCCACGTAGATACTCTTTTGCTACAATAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
73842993 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCAAAAACACTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
*
73843058 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTGCAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
73843119 AAT
1 AAT
73843122 GAGGCTATAA
Statistics
Matches: 236, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
126 207 0.88
127 29 0.12
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:73846652 original size:18 final size:18
Alignment explanation
Indices: 73846611--73846653 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
73846601 GACTAGGAAA
* *
73846611 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
*
73846629 AAGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
73846647 AGGATAC
1 AGGATAC
73846654 GCACCTGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.09, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:73847258 original size:14 final size:14
Alignment explanation
Indices: 73847235--73847266 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
73847225 TATTACTTAT
*
73847235 ATACATAATACTAA
1 ATACAAAATACTAA
73847249 ATACAAAATACTAA
1 ATACAAAATACTAA
73847263 ATAC
1 ATAC
73847267 GAAACGACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.25
Consensus pattern (14 bp):
ATACAAAATACTAA
Found at i:73848323 original size:48 final size:46
Alignment explanation
Indices: 73848249--73848382 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 46
73848239 ATGCAAACAT
* **
73848249 CATAAATGAAAAAAAATCAAGCAGTATTGAAATTGTAATTATAA-TTA
1 CATAAATGAAAAAATATCAAATAGTATTGAAATT-TAATTA-AATTTA
*
73848296 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAA-AAAATATCAAATAGTATTG-AAATTTAATTAAATTTA
* *
73848344 CATAAATTAAAATAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAA-AATATCAAATAGTATTG-AAATTTAA
73848383 AATTATCACT
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
47 14 0.18
48 57 0.75
49 5 0.07
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (46 bp):
CATAAATGAAAAAATATCAAATAGTATTGAAATTTAATTAAATTTA
Found at i:73855511 original size:20 final size:20
Alignment explanation
Indices: 73855475--73855518 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
73855465 CATAATATAG
*
73855475 AATTTAAAAGTGTTATAAAT
1 AATTTAAAAGTGTTATAAAA
*
73855495 AATTTAAAA-TTTGTATAAAA
1 AATTTAAAAGTGT-TATAAAA
73855515 AATT
1 AATT
73855519 ATAATCAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (20 bp):
AATTTAAAAGTGTTATAAAA
Found at i:73855631 original size:14 final size:14
Alignment explanation
Indices: 73855612--73855643 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
73855602 AGGTCATTTA
73855612 GCCCAACCAAACTG
1 GCCCAACCAAACTG
73855626 GCCCAACCAAACTG
1 GCCCAACCAAACTG
73855640 GCCC
1 GCCC
73855644 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:73860094 original size:14 final size:14
Alignment explanation
Indices: 73860075--73860105 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
73860065 AGGTCATTTA
73860075 GCCCAACCAAACTG
1 GCCCAACCAAACTG
73860089 GCCCAACCAAACTG
1 GCCCAACCAAACTG
73860103 GCC
1 GCC
73860106 TGGTGATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.45, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:73861555 original size:21 final size:21
Alignment explanation
Indices: 73861531--73861594 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
73861521 TTTCAAACAA
73861531 TCACAAAAAGTATCAATACCT
1 TCACAAAAAGTATCAATACCT
73861552 TCACAAAAAGTATCAATACCT
1 TCACAAAAAGTATCAATACCT
* *
73861573 TTACAAAAAGTATCGATACCT
1 TCACAAAAAGTATCAATACCT
73861594 T
1 T
73861595 TTACCAGGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (21 bp):
TCACAAAAAGTATCAATACCT
Found at i:73865915 original size:15 final size:15
Alignment explanation
Indices: 73865895--73865930 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
73865885 GCCCAACCAA
73865895 GGTCTTACACTATAT
1 GGTCTTACACTATAT
*
73865910 GGTCTTACATTATAT
1 GGTCTTACACTATAT
73865925 GGTCTT
1 GGTCTT
73865931 TAGAGTGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (15 bp):
GGTCTTACACTATAT
Found at i:73867652 original size:39 final size:39
Alignment explanation
Indices: 73867589--73867664 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
73867579 CATTCAATTC
*
73867589 AAACAGAATATCCAATTCAGTATTACAATTCCAACAATA
1 AAACAGAATATCCAATTCAATATTACAATTCCAACAATA
* * *
73867628 AAACCGAATATCCAGTTCAATATTATAATTCCAACAA
1 AAACAGAATATCCAATTCAATATTACAATTCCAACAA
73867665 CAATTCATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.26
Consensus pattern (39 bp):
AAACAGAATATCCAATTCAATATTACAATTCCAACAATA
Found at i:73869783 original size:21 final size:21
Alignment explanation
Indices: 73869754--73869805 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
73869744 TTTTGTTCAG
*
73869754 TGTCGTGACATGCAAGGCTTC
1 TGTCATGACATGCAAGGCTTC
73869775 TGTCATGACATGCAAGGCTTC
1 TGTCATGACATGCAAGGCTTC
73869796 TGTCATGACA
1 TGTCATGACA
73869806 CGGAAGACAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (21 bp):
TGTCATGACATGCAAGGCTTC
Found at i:73870779 original size:13 final size:13
Alignment explanation
Indices: 73870763--73870801 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
73870753 TTAAAGAACA
73870763 AAGTTCTTATCAC
1 AAGTTCTTATCAC
73870776 AAGTTCTTATCAC
1 AAGTTCTTATCAC
*
73870789 AAGGTTATTATCA
1 AA-GTTCTTATCA
73870802 GAATTCCTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (13 bp):
AAGTTCTTATCAC
Found at i:73871418 original size:109 final size:109
Alignment explanation
Indices: 73871038--73871465 Score: 450
Period size: 110 Copynumber: 3.9 Consensus size: 109
73871028 CTTTAACCGG
* * *
73871038 CTCACGATGCTGTTCACACAAGCTGTAGAGAATCCGTAACACATGCAGGATCTCAAGCCATCGTT
1 CTCACGATGCTGCTCACACAAGCTGCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCGTT
* ** *
73871103 ATGGCCTGTATCACCAGTACATAGTACATACTAATTAAT-CCCA
66 ACGATCTGTATCACCAGTACATAGTACCTACTAATTAATCCCCA
* * * * * * *
73871146 GGCTCATGATGCTGCTCATACAAGTTGTAGACAATCCGCAACACATGCAGGATCCCAAGCCATTG
1 --CTCACGATGCTGCTCACACAAGCTGCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCG
* * * * *
73871211 TCACAGA-CTGTATCACTAGTACATTGTACCTACTAATTAATTCTCA
64 TTAC-GATCTGTATCACCAGTACATAGTACCTACTAATTAATCCCCA
* * * * *
73871257 GCTCACGATGCTGCTCATAGAAGCTGCAGAGAATCCGCAACATATGCCGGATCTCAAGCCATCAT
1 -CTCACGATGCTGCTCACACAAGCTGCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCGT
* * *
73871322 TACGATCTGTATCACCGGTACATAATACCTA-AAATTAATCCCCTA
65 TACGATCTGTATCACCAGTACATAGTACCTACTAATTAATCCCC-A
* * * * *
73871367 TTCACAATGCTGCTCACACAAG-TCGCGGAGAATCCGCAACATAAGCAGGATCTCAAGCCATCGT
1 CTCACGATGCTGCTCACACAAGCT-GCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCGT
* * * *
73871431 TACGATCTATATCATCGGTACATAGTACCTGCTAA
65 TACGATCTGTATCACCAGTACATAGTACCTACTAA
73871466 ATGATCGCCG
Statistics
Matches: 266, Mismatches: 46, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
108 1 0.00
109 92 0.35
110 169 0.64
111 4 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (109 bp):
CTCACGATGCTGCTCACACAAGCTGCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCGTT
ACGATCTGTATCACCAGTACATAGTACCTACTAATTAATCCCCA
Found at i:73872185 original size:17 final size:17
Alignment explanation
Indices: 73872163--73872200 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
73872153 TCAAGTCCTT
73872163 ACATTTTTA-TCACTTTA
1 ACATTTTTAGTC-CTTTA
73872180 ACA-TTTTAGTCCTTTA
1 ACATTTTTAGTCCTTTA
73872196 ACATT
1 ACATT
73872201 AAAATTAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.29, C:0.18, G:0.03, T:0.50
Consensus pattern (17 bp):
ACATTTTTAGTCCTTTA
Found at i:73873319 original size:26 final size:23
Alignment explanation
Indices: 73873266--73873329 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 23
73873256 TAAGTTCTAG
*
73873266 GATTAA-AAAAAAATTAATTCTA
1 GATTAAGAAAAAAATTAATGCTA
73873288 GA-TAAGAAAAAAATATAAATGCTCA
1 GATTAAGAAAAAAAT-T-AATGCT-A
*
73873313 GATTAAG-ACAAAATTAA
1 GATTAAGAAAAAAATTAA
73873330 CTCTAATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
21 3 0.09
22 10 0.29
23 3 0.09
24 6 0.17
25 9 0.26
26 4 0.11
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.25
Consensus pattern (23 bp):
GATTAAGAAAAAAATTAATGCTA
Found at i:73873705 original size:22 final size:22
Alignment explanation
Indices: 73873677--73873719 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
73873667 AATAGTGAAT
73873677 AAGAAAATAAAATATTTCAATG
1 AAGAAAATAAAATATTTCAATG
73873699 AAGAAAATAAAATATTTCAAT
1 AAGAAAATAAAATATTTCAAT
73873720 TTAAAGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (22 bp):
AAGAAAATAAAATATTTCAATG
Found at i:73874558 original size:19 final size:20
Alignment explanation
Indices: 73874529--73874584 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 20
73874519 GAACAAAAAA
73874529 AAGAA-AAATAATAAAT-TT
1 AAGAATAAATAATAAATATT
73874547 AAGAATAAATAATAAATATT
1 AAGAATAAATAATAAATATT
*
73874567 AAAAAT-AATAACTAAATA
1 AAGAATAAATAA-TAAATA
73874585 AAGAAAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
18 5 0.15
19 16 0.47
20 13 0.38
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAGAATAAATAATAAATATT
Found at i:73874784 original size:12 final size:12
Alignment explanation
Indices: 73874767--73874799 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
73874757 ACAACTCCTT
73874767 GAAGAAAATCAA
1 GAAGAAAATCAA
73874779 GAAGAAAATCAA
1 GAAGAAAATCAA
73874791 GAAGAAAAT
1 GAAGAAAAT
73874800 TGCTTCTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.67, C:0.06, G:0.18, T:0.09
Consensus pattern (12 bp):
GAAGAAAATCAA
Found at i:73876306 original size:20 final size:20
Alignment explanation
Indices: 73876281--73876323 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
73876271 GACTTGTACA
*
73876281 CTGTCAAATCAAAAGTAACC
1 CTGTCAAATCAAAACTAACC
73876301 CTGTCAAATCAAAACTAACC
1 CTGTCAAATCAAAACTAACC
73876321 CTG
1 CTG
73876324 GTCTGATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.28, G:0.09, T:0.21
Consensus pattern (20 bp):
CTGTCAAATCAAAACTAACC
Found at i:73876718 original size:6 final size:6
Alignment explanation
Indices: 73876709--73876736 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
73876699 TTAATTTTAA
73876709 CAATAC CAATAC CAATAC CAATAC CAAT
1 CAATAC CAATAC CAATAC CAATAC CAAT
73876737 TACCTTACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (6 bp):
CAATAC
Found at i:73879245 original size:18 final size:18
Alignment explanation
Indices: 73879195--73879245 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
73879185 ATCATATACA
* *
73879195 TTATATCTTATTATGTGTT
1 TTATATATTATT-TATGTT
*
73879214 TTAT-TATTCTTTTATGTT
1 TTATATATT-ATTTATGTT
73879232 TTATATATTATTTA
1 TTATATATTATTTA
73879246 AGCCATCATG
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.67
Consensus pattern (18 bp):
TTATATATTATTTATGTT
Found at i:73890532 original size:49 final size:49
Alignment explanation
Indices: 73890392--73890618 Score: 354
Period size: 49 Copynumber: 4.7 Consensus size: 49
73890382 GGGAAGGAAG
*
73890392 CCAAAGTAAAAACCCGCAAAGGGCGCTTTGAGACTTT-AAAAAAAAAGA
1 CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTTCAAAAAAAAAGA
* *
73890440 CCAAAGTGAAAACCTGCAAAGAGCGCTTTGAGACTTTC--AAAAAAA-A
1 CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTTCAAAAAAAAAGA
*
73890486 CCAAAGTGAAAACCCGCAAAGGGCGCTTTAAGACTTTCAAAAAAAAAGA
1 CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTTCAAAAAAAAAGA
* * *
73890535 CCAAAGTGAAAAACCGCAAAGGACGCTTTGAGACTTTCAAAAAAAAAGG
1 CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTTCAAAAAAAAAGA
*
73890584 CCAAAGTGAAAACCCGCAAAGGGTGCTTTGAGACT
1 CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACT
73890619 CAATAATAAA
Statistics
Matches: 162, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
46 36 0.22
47 7 0.04
48 41 0.25
49 78 0.48
ACGTcount: A:0.45, C:0.20, G:0.20, T:0.15
Consensus pattern (49 bp):
CCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTTCAAAAAAAAAGA
Found at i:73890571 original size:95 final size:96
Alignment explanation
Indices: 73890389--73890618 Score: 369
Period size: 95 Copynumber: 2.4 Consensus size: 96
73890379 CAAGGGAAGG
*
73890389 AAGCCAAAGTAAAAACCCGCAAAGGGCGCTTTGAGACTTTAAAAAAAAAGACCAAAGTGAAAACC
1 AAGCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTTAAAAAAAAAGACCAAAGTGAAAACC
73890454 TGCAAAGAGCGCTTTGAGACTTTC-AAAAAA
66 TGCAAAGAGCGCTTTGAGACTTTCAAAAAAA
*
73890484 AA-CCAAAGTGAAAACCCGCAAAGGGCGCTTTAAGACTTTCAAAAAAAAAGACCAAAGTGAAAAA
1 AAGCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTT-AAAAAAAAAGACCAAAGTG-AAAA
73890548 CC-GCAAAG-GACGCTTTGAGACTTTCAAAAAAA
64 CCTGCAAAGAG-CGCTTTGAGACTTTCAAAAAAA
*
73890580 AAGGCCAAAGTGAAAACCCGCAAAGGGTGCTTTGAGACT
1 AA-GCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACT
73890619 CAATAATAAA
Statistics
Matches: 125, Mismatches: 4, Indels: 9
0.91 0.03 0.07
Matches are distributed among these distances:
94 36 0.29
95 42 0.34
96 14 0.11
98 33 0.26
ACGTcount: A:0.45, C:0.20, G:0.20, T:0.15
Consensus pattern (96 bp):
AAGCCAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTTTAAAAAAAAAGACCAAAGTGAAAACC
TGCAAAGAGCGCTTTGAGACTTTCAAAAAAA
Found at i:73892090 original size:176 final size:176
Alignment explanation
Indices: 73891765--73892560 Score: 939
Period size: 176 Copynumber: 4.5 Consensus size: 176
73891755 GATATTGGTA
* * * *
73891765 AAGATTGAATATCTTATCTCCCTAAAGTTA-CAGTGGAGCAGATCGAAA-ATGGTGAATTTTATC
1 AAGATTGAAGATCTTATCTCCCT-AAG-TAGTAGCGGAGCAGATCGAAAGA-GGTGAATCTTATC
* * * * * *
73891828 TCCATGTAT--GCAATGGAGCAGATTTTA-CCACTAGCCTCATCTCTTTGAGGTAGCAAGATAGC
63 TCCATGTATCGGTAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
* * *
73891890 ATGTTGAAGATTGAGTCCTATCTTTCTGAAGTAGCAAGAAAGCAGACTG
128 AGGTTGAAGATTGAGTCTTATCTTTCTGAAGTAGCAAAAAAGCAGACTG
*
73891939 AAGATTGAAGATCTTATCTCCCTAAGTAGTAGCGGAGTAGATCGAAAGAGGTGAATCTTATCTCC
1 AAGATTGAAGATCTTATCTCCCTAAGTAGTAGCGGAGCAGATCGAAAGAGGTGAATCTTATCTCC
* * *
73892004 ATGTATCGGTAATGGAGCAGATTTAAGCCCCAAGCCATATCTCTCTGAGGTAGCAAGAGAGTAGG
66 ATGTATCGGTAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
* * *
73892069 TTGAAGATTGAGTCTTATCTTTCTGAAGTAGCAATAAAGTAGATTG
131 TTGAAGATTGAGTCTTATCTTTCTGAAGTAGCAAAAAAGCAGACTG
* * * **
73892115 AAGATTGAATATCTTATCTCCCTAAGCAGTAGCGGAACAGATCGAAAGAGGCAAATCTTATCTCC
1 AAGATTGAAGATCTTATCTCCCTAAGTAGTAGCGGAGCAGATCGAAAGAGGTGAATCTTATCTCC
* * * *
73892180 ATGTATCAGTAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAAG
66 ATGTATCGGTAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
* *
73892245 TTGAAGATTGAGTCTTATCTCTCTGAGGTAGCAAAAAAGCAGACTG
131 TTGAAGATTGAGTCTTATCTTTCTGAAGTAGCAAAAAAGCAGACTG
* * * *
73892291 AAGATTGAAGATTTTATCTCCTTAAGTAGTAGCGGAGCAGATTGGAAGAGGTGAATCTTATCTCC
1 AAGATTGAAGATCTTATCTCCCTAAGTAGTAGCGGAGCAGATCGAAAGAGGTGAATCTTATCTCC
* * * * * *
73892356 ATGTATCGGTAATGGAGAAGATTTTAGCCGCTAGCTTTATCTCTCTGAGGTAGCAAGAGAGCAGA
66 ATGTATCGGTAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
** *
73892421 TTGGCGATTGAAGTCTTAT-TTTCTTGAGGTAG-AAAAGAAGCAGACTG
131 TTGAAGATTG-AGTCTTATCTTTC-TGAAGTAGCAAAA-AAGCAGACTG
* * * * * * * * *
73892468 AACATTGAAGATC-TATTTCCCGAAGTAGTTGTGGAGTA-AGTTG-AGGATGG-CAGATCTTATC
1 AAGATTGAAGATCTTATCTCCCTAAGTAGTAGCGGAGCAGA-TCGAAAGA-GGTGA-ATCTTATC
* *
73892529 TCCATGTATCGGTGATGGAGCAGATTTGAGCC
63 TCCATGTATCGGTAATGGAGCAGATTTAAGCC
73892561 GCCGGTCTTA
Statistics
Matches: 541, Mismatches: 70, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
172 2 0.00
173 39 0.07
174 23 0.04
175 21 0.04
176 419 0.77
177 37 0.07
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (176 bp):
AAGATTGAAGATCTTATCTCCCTAAGTAGTAGCGGAGCAGATCGAAAGAGGTGAATCTTATCTCC
ATGTATCGGTAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
TTGAAGATTGAGTCTTATCTTTCTGAAGTAGCAAAAAAGCAGACTG
Found at i:73892102 original size:43 final size:43
Alignment explanation
Indices: 73892041--73892122 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
73892031 CCCCAAGCCA
* * *
73892041 TATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATTGAGTCT
1 TATCTCTCTGAAGTAGCAAGAAAGTAGATTGAAGATTGAGTCT
* *
73892084 TATCTTTCTGAAGTAGCAATAAAGTAGATTGAAGATTGA
1 TATCTCTCTGAAGTAGCAAGAAAGTAGATTGAAGATTGA
73892123 ATATCTTATC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.32
Consensus pattern (43 bp):
TATCTCTCTGAAGTAGCAAGAAAGTAGATTGAAGATTGAGTCT
Found at i:73892293 original size:43 final size:43
Alignment explanation
Indices: 73892215--73892298 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
73892205 AGCCTCAAGC
* * *
73892215 CTTATCTCTCTAAGGTAGCAAGAGAGCAAGTTGAAGATTGAGT
1 CTTATCTCTCTAAGGTAGCAAAAAAGCAAGCTGAAGATTGAGT
*
73892258 CTTATCTCTCTGAGGTAGCAAAAAAGC-AGACTGAAGATTGA
1 CTTATCTCTCTAAGGTAGCAAAAAAGCAAG-CTGAAGATTGA
73892299 AGATTTTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 34 0.94
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (43 bp):
CTTATCTCTCTAAGGTAGCAAAAAAGCAAGCTGAAGATTGAGT
Found at i:73895010 original size:18 final size:18
Alignment explanation
Indices: 73894960--73895010 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
73894950 ATTATATACA
* *
73894960 TTATATCTTATTATGTGTT
1 TTATATATTATT-TATGTT
*
73894979 TTAT-TATTCTTTTATGTT
1 TTATATATT-ATTTATGTT
73894997 TTATATATTATTTA
1 TTATATATTATTTA
73895011 AGCCATCATG
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.67
Consensus pattern (18 bp):
TTATATATTATTTATGTT
Found at i:73896653 original size:18 final size:17
Alignment explanation
Indices: 73896630--73896663 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
73896620 TATGATAATA
*
73896630 AAATTTATGTATATTTAG
1 AAATTTAAGTAT-TTTAG
73896648 AAATTTAAGTATTTTA
1 AAATTTAAGTATTTTA
73896664 TATAAAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (17 bp):
AAATTTAAGTATTTTAG
Found at i:73896794 original size:16 final size:16
Alignment explanation
Indices: 73896755--73896791 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
73896745 AATTATTTCA
73896755 TTTAAAA-TTAAAATG
1 TTTAAAATTTAAAATG
*
73896770 TTTATAATTTAAAAT-
1 TTTAAAATTTAAAATG
73896785 TTTAAAA
1 TTTAAAA
73896792 ATTATTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (16 bp):
TTTAAAATTTAAAATG
Found at i:73897111 original size:30 final size:30
Alignment explanation
Indices: 73897077--73897138 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
73897067 TGGGTTGGGC
73897077 TTTTCTATTCTTAATATAAAACATATTCTA
1 TTTTCTATTCTTAATATAAAACATATTCTA
73897107 TTTTCTATTCTTAATATAAAACATATTCTA
1 TTTTCTATTCTTAATATAAAACATATTCTA
73897137 TT
1 TT
73897139 ATAAACTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (30 bp):
TTTTCTATTCTTAATATAAAACATATTCTA
Found at i:73898548 original size:15 final size:15
Alignment explanation
Indices: 73898528--73898622 Score: 67
Period size: 15 Copynumber: 6.5 Consensus size: 15
73898518 TCTGTTGTGG
73898528 GAGAAAGAAGATGAA
1 GAGAAAGAAGATGAA
73898543 GAGAAAGAAGA-GAA
1 GAGAAAGAAGATGAA
*
73898557 GA-ACAAGAA-A-AAA
1 GAGA-AAGAAGATGAA
* *
73898570 TA-AAAGAAGCATAAA
1 GAGAAAGAAG-ATGAA
* *
73898585 GAGAAAGAGGTTG-A
1 GAGAAAGAAGATGAA
*
73898599 GGGAGAAGAAGATGAA
1 GAGA-AAGAAGATGAA
73898615 GAGAAAGA
1 GAGAAAGA
73898623 TGAGAAGAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 14
0.72 0.11 0.16
Matches are distributed among these distances:
12 5 0.08
13 6 0.10
14 15 0.24
15 27 0.43
16 10 0.16
ACGTcount: A:0.60, C:0.02, G:0.32, T:0.06
Consensus pattern (15 bp):
GAGAAAGAAGATGAA
Found at i:73904322 original size:17 final size:18
Alignment explanation
Indices: 73904286--73904328 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
73904276 TTTTTAAGCA
**
73904286 ATAAATATTAATTATTTAT
1 ATAAAT-TTAATTAAATAT
73904305 A-AAATTTAATTAAATAT
1 ATAAATTTAATTAAATAT
73904322 ATAAATT
1 ATAAATT
73904329 ATATTTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 11 0.52
18 9 0.43
19 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATAAATTTAATTAAATAT
Found at i:73907633 original size:27 final size:27
Alignment explanation
Indices: 73907591--73907643 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
73907581 CCCAAATTAA
73907591 TAAAATAACTAATATGCCCCTATGAGG
1 TAAAATAACTAATATGCCCCTATGAGG
* * *
73907618 TAAAATGACTATTATGCCCTTATGAG
1 TAAAATAACTAATATGCCCCTATGAG
73907644 ATGTATAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (27 bp):
TAAAATAACTAATATGCCCCTATGAGG
Found at i:73907876 original size:22 final size:23
Alignment explanation
Indices: 73907851--73907893 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
73907841 TATCCCCACA
*
73907851 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
73907873 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
73907894 GTAGGATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.02, G:0.53, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:73914465 original size:15 final size:16
Alignment explanation
Indices: 73914445--73914476 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
73914435 TTTCTCAAAT
73914445 TATTTTTCTTTT-TCA
1 TATTTTTCTTTTCTCA
73914460 TATTTTTCTTTTCTCA
1 TATTTTTCTTTTCTCA
73914476 T
1 T
73914477 TTTATTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (16 bp):
TATTTTTCTTTTCTCA
Found at i:73914505 original size:33 final size:33
Alignment explanation
Indices: 73914468--73914544 Score: 79
Period size: 33 Copynumber: 2.3 Consensus size: 33
73914458 CATATTTTTC
*
73914468 TTTTCTCATTTTATTT-TC-ACTTTCTTTTGTTAT
1 TTTTCTCATTTT-TTTCTCAACTTTCTTTTCTT-T
*
73914501 TTTTCCTC-TTTTTTTCTCAATTTTCTTTTCTTT
1 TTTT-CTCATTTTTTTCTCAACTTTCTTTTCTTT
*
73914534 TTCTCTCATTT
1 TTTTCTCATTT
73914545 GATCTACAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
32 6 0.16
33 17 0.46
34 14 0.38
ACGTcount: A:0.09, C:0.19, G:0.01, T:0.70
Consensus pattern (33 bp):
TTTTCTCATTTTTTTCTCAACTTTCTTTTCTTT
Found at i:73914524 original size:20 final size:20
Alignment explanation
Indices: 73914501--73914538 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
73914491 CTTTTGTTAT
73914501 TTTTCCTCTT-TTTTTCTCAA
1 TTTT-CTCTTCTTTTTCTCAA
*
73914521 TTTTCTTTTCTTTTTCTC
1 TTTTCTCTTCTTTTTCTC
73914539 TCATTTGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTCTCTTCTTTTTCTCAA
Found at i:73917880 original size:28 final size:28
Alignment explanation
Indices: 73917806--73917878 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
73917796 AATTCGACTG
* **
73917806 AAGCTAAAACATATTAAATTTATGTAAT
1 AAGCTAAGACATATTAAAGATATGTAAT
* *
73917834 AAGCTAAGACAAATTAAAGATATGTATT
1 AAGCTAAGACATATTAAAGATATGTAAT
73917862 AA-CTAAGACATATTAAA
1 AAGCTAAGACATATTAAA
73917879 AGCATGCATT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 14 0.36
28 25 0.64
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (28 bp):
AAGCTAAGACATATTAAAGATATGTAAT
Found at i:73917889 original size:27 final size:27
Alignment explanation
Indices: 73917837--73917890 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
73917827 ATGTAATAAG
* *
73917837 CTAAGACAAATTAAAGATATGTATTAA
1 CTAAGACAAATTAAAGACATGCATTAA
*
73917864 CTAAGACATATTAAA-AGCATGCATTAA
1 CTAAGACAAATTAAAGA-CATGCATTAA
73917891 AATAAAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (27 bp):
CTAAGACAAATTAAAGACATGCATTAA
Found at i:73922674 original size:23 final size:22
Alignment explanation
Indices: 73922648--73922691 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
73922638 TAAGTATACT
73922648 AGAACTCTAATTTAAACTAAATC
1 AGAACT-TAATTTAAACTAAATC
* **
73922671 AGAAGTTGTTTTAAACTAAAT
1 AGAACTTAATTTAAACTAAAT
73922692 TTTCTTGTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.34
Consensus pattern (22 bp):
AGAACTTAATTTAAACTAAATC
Found at i:73922771 original size:14 final size:14
Alignment explanation
Indices: 73922752--73922778 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73922742 CAAAATTTGA
73922752 AATAAAATAATAAT
1 AATAAAATAATAAT
73922766 AATAAAATAATAA
1 AATAAAATAATAA
73922779 GAGCTGATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAAAATAATAAT
Found at i:73926232 original size:6 final size:6
Alignment explanation
Indices: 73926221--73926258 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
73926211 AAAAATTGTG
*
73926221 ATAATT ATAATT ATAATT ATAATT -TAAATT ACAATT AT
1 ATAATT ATAATT ATAATT ATAATT AT-AATT ATAATT AT
73926259 TACATAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 1 0.04
6 27 0.96
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (6 bp):
ATAATT
Found at i:73927053 original size:17 final size:17
Alignment explanation
Indices: 73927031--73927064 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
73927021 AACATATCAA
73927031 GAATACTAAATTAGTAC
1 GAATACTAAATTAGTAC
73927048 GAATACTAAATTAGTAC
1 GAATACTAAATTAGTAC
73927065 AATTGTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (17 bp):
GAATACTAAATTAGTAC
Found at i:73927212 original size:16 final size:19
Alignment explanation
Indices: 73927183--73927224 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
73927173 GTGGGTAAAC
*
73927183 AAAAATATTTTATA-TTA-
1 AAAAATATTCTATATTTAT
73927200 AAAAATA-TCTATATTTAT
1 AAAAATATTCTATATTTAT
73927218 AAAAATA
1 AAAAATA
73927225 AATCAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 5 0.23
17 10 0.45
18 7 0.32
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAAATATTCTATATTTAT
Found at i:73935117 original size:35 final size:35
Alignment explanation
Indices: 73935071--73935140 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
73935061 TAACGGCTGA
*
73935071 CGTGGTATGTTGGTAACACTAATTTCTTTGACTAC
1 CGTGGTATGTTGGTAACACTAATCTCTTTGACTAC
73935106 CGTGGTATGTTGGTAACACTAATCTCTTTGACTAC
1 CGTGGTATGTTGGTAACACTAATCTCTTTGACTAC
73935141 ACCAATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.39
Consensus pattern (35 bp):
CGTGGTATGTTGGTAACACTAATCTCTTTGACTAC
Found at i:73936127 original size:28 final size:26
Alignment explanation
Indices: 73936079--73936130 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
73936069 AAATCATTTT
**
73936079 AAAATTGTAAAACTTATTTAAAATAA
1 AAAATTGTAAAAAGTATTTAAAATAA
73936105 AAAATTGTAAAAAAGTATTTTAAAAT
1 AAAATTGT-AAAAAGTA-TTTAAAAT
73936131 TTAGAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 6 0.27
28 8 0.36
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.35
Consensus pattern (26 bp):
AAAATTGTAAAAAGTATTTAAAATAA
Found at i:73936142 original size:35 final size:35
Alignment explanation
Indices: 73936094--73936163 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
73936084 TGTAAAACTT
73936094 ATTTAAAATAAAAAA-TTGTAAAAAAGTATTTTAAA
1 ATTTAAAATAAAAAATTTGT-AAAAAGTATTTTAAA
* *
73936129 ATTTAGAAA-AAAAAATTTGTTAAAATTATTTTAAA
1 ATTTA-AAATAAAAAATTTGTAAAAAGTATTTTAAA
73936164 TATGAAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 24 0.77
36 7 0.23
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (35 bp):
ATTTAAAATAAAAAATTTGTAAAAAGTATTTTAAA
Found at i:73936244 original size:9 final size:9
Alignment explanation
Indices: 73936232--73936287 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
73936222 TAAAAAAAAC
73936232 TAAAAATGT
1 TAAAAATGT
* *
73936241 TAAAACTAT
1 TAAAAATGT
*
73936250 TAAAAATAT
1 TAAAAATGT
*
73936259 TAAAAATGG
1 TAAAAATGT
73936268 T-AAAATGGT
1 TAAAAAT-GT
73936277 TAAAAAGTGT
1 TAAAAA-TGT
73936287 T
1 T
73936288 TTCAAGTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
8 5 0.13
9 25 0.66
10 7 0.18
11 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.12, T:0.32
Consensus pattern (9 bp):
TAAAAATGT
Found at i:73936596 original size:25 final size:24
Alignment explanation
Indices: 73936560--73936608 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
73936550 AGAAATGTAA
* *
73936560 TTTTATTATTTTAATTAACTATAT
1 TTTTATAATTTTAAATAACTATAT
*
73936584 TTTTATAATTTTTAAATAATTATAT
1 TTTTATAA-TTTTAAATAACTATAT
73936609 CAAATTATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTATAATTTTAAATAACTATAT
Found at i:73936941 original size:9 final size:10
Alignment explanation
Indices: 73936928--73936970 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
73936918 AATTTTACAA
73936928 ATTTTTAATG
1 ATTTTTAATG
73936938 -TTTTTAATG
1 ATTTTTAATG
* *
73936947 ATTTTTACTA
1 ATTTTTAATG
73936957 ATTTTTAATG
1 ATTTTTAATG
73936967 ATTT
1 ATTT
73936971 CTTGTCCCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 9 0.32
10 19 0.68
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (10 bp):
ATTTTTAATG
Found at i:73940081 original size:13 final size:13
Alignment explanation
Indices: 73940043--73940074 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
73940033 GTGCCAATGA
73940043 AGGCACATTGGTT
1 AGGCACATTGGTT
73940056 AGGCACATTGGTT
1 AGGCACATTGGTT
73940069 AGGCAC
1 AGGCAC
73940075 TTAGGTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (13 bp):
AGGCACATTGGTT
Found at i:73943574 original size:14 final size:14
Alignment explanation
Indices: 73943555--73943606 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
73943545 CATGTTAATC
73943555 ATTCATATTCGCAT
1 ATTCATATTCGCAT
** *
73943569 ATTCATACCCTACAAT
1 ATTCATATTC-GC-AT
73943585 CATTCATATTCGCAT
1 -ATTCATATTCGCAT
73943600 ATTCATA
1 ATTCATA
73943607 CCCTACAATC
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
14 15 0.52
15 3 0.10
16 3 0.10
17 8 0.28
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (14 bp):
ATTCATATTCGCAT
Found at i:73943586 original size:31 final size:31
Alignment explanation
Indices: 73943551--73943618 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
73943541 ATATCATGTT
73943551 AATCATTCATATTCGCATATTCATACCCTAC
1 AATCATTCATATTCGCATATTCATACCCTAC
73943582 AATCATTCATATTCGCATATTCATACCCTAC
1 AATCATTCATATTCGCATATTCATACCCTAC
73943613 AATCAT
1 AATCAT
73943619 CCACGTTTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.35
Consensus pattern (31 bp):
AATCATTCATATTCGCATATTCATACCCTAC
Found at i:73943591 original size:17 final size:17
Alignment explanation
Indices: 73943569--73943618 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
73943559 ATATTCGCAT
73943569 ATTCATACCCTACAATC
1 ATTCATACCCTACAATC
** *
73943586 ATTCATATTC-GC-AT-
1 ATTCATACCCTACAATC
73943600 ATTCATACCCTACAATC
1 ATTCATACCCTACAATC
73943617 AT
1 AT
73943619 CCACGTTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 6
0.67 0.17 0.17
Matches are distributed among these distances:
14 8 0.33
15 3 0.12
16 3 0.12
17 10 0.42
ACGTcount: A:0.34, C:0.30, G:0.02, T:0.34
Consensus pattern (17 bp):
ATTCATACCCTACAATC
Found at i:73943632 original size:31 final size:31
Alignment explanation
Indices: 73943551--73943646 Score: 95
Period size: 31 Copynumber: 3.1 Consensus size: 31
73943541 ATATCATGTT
* * *
73943551 AATCATTCATATTCGCATATTCATACCCTAC
1 AATCATCCACATTCACATATTCATACCCTAC
* * *
73943582 AATCATTCATATTCGCATATTCATACCCTAC
1 AATCATCCACATTCACATATTCATACCCTAC
* * * *
73943613 AATCATCCACGTTTACATA-TCAAACCCTAT
1 AATCATCCACATTCACATATTCATACCCTAC
73943643 AATC
1 AATC
73943647 GGTCACATTT
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 13 0.22
31 45 0.78
ACGTcount: A:0.34, C:0.29, G:0.03, T:0.33
Consensus pattern (31 bp):
AATCATCCACATTCACATATTCATACCCTAC
Found at i:73947371 original size:18 final size:19
Alignment explanation
Indices: 73947348--73947383 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
73947338 GCTGAATAAC
73947348 TGTATTC-TGTTATTTGTT
1 TGTATTCATGTTATTTGTT
*
73947366 TGTATTCATGTTGTTTGT
1 TGTATTCATGTTATTTGT
73947384 GGGGATGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.11, C:0.06, G:0.19, T:0.64
Consensus pattern (19 bp):
TGTATTCATGTTATTTGTT
Found at i:73950645 original size:22 final size:22
Alignment explanation
Indices: 73950615--73950656 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
73950605 TATATACATG
*
73950615 TGGTAGCACAATCAGCATTTCA
1 TGGTAGCACAATCAACATTTCA
*
73950637 TGGTGGCACAATCAACATTT
1 TGGTAGCACAATCAACATTT
73950657 TGTTTGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (22 bp):
TGGTAGCACAATCAACATTTCA
Found at i:73951121 original size:10 final size:10
Alignment explanation
Indices: 73951106--73951220 Score: 66
Period size: 10 Copynumber: 11.7 Consensus size: 10
73951096 ATAATAATAA
73951106 AATAAAAATT
1 AATAAAAATT
*
73951116 AATAAAAGTT
1 AATAAAAATT
73951126 -ATCAAAAATT
1 AAT-AAAAATT
73951136 -ATAAAAATT
1 AATAAAAATT
* **
73951145 ATTAAATTTT
1 AATAAAAATT
73951155 AATAAAAAATT
1 AAT-AAAAATT
*
73951166 --TAAAATTT
1 AATAAAAATT
*
73951174 ATTAAAAATTT
1 AATAAAAA-TT
73951185 GAA-AAAAATT
1 -AATAAAAATT
73951195 -ATAAAAATCAT
1 AATAAAAAT--T
73951206 AA-AAAAATT
1 AATAAAAATT
73951215 -ATAAAA
1 AATAAAA
73951221 TATATAGAAA
Statistics
Matches: 82, Mismatches: 11, Indels: 25
0.69 0.09 0.21
Matches are distributed among these distances:
8 8 0.10
9 21 0.26
10 32 0.39
11 19 0.23
12 2 0.02
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
AATAAAAATT
Found at i:73951132 original size:19 final size:20
Alignment explanation
Indices: 73951109--73951183 Score: 66
Period size: 19 Copynumber: 3.9 Consensus size: 20
73951099 ATAATAAAAT
*
73951109 AAAAATTAATAAAAGTTATC
1 AAAAATTAATAAAAATTATC
*
73951129 AAAAATT-ATAAAAATTATT
1 AAAAATTAATAAAAATTATC
**
73951148 AAATTTTAATAAAAAATT-T-
1 AAAAATTAAT-AAAAATTATC
* *
73951167 AAAATTTATTAAAAATT
1 AAAAATTAATAAAAATT
73951184 TGAAAAAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
18 7 0.15
19 23 0.49
20 10 0.21
21 7 0.15
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (20 bp):
AAAAATTAATAAAAATTATC
Found at i:73951140 original size:29 final size:29
Alignment explanation
Indices: 73951107--73951220 Score: 106
Period size: 29 Copynumber: 3.9 Consensus size: 29
73951097 TAATAATAAA
* * *
73951107 ATAAAAATTAATAAAAGTTATCAAAAATT
1 ATAAAAATTATTAAAAATTATAAAAAATT
**
73951136 ATAAAAATTATTAAATTTTAATAAAAAATT
1 ATAAAAATTATTAAAAATT-ATAAAAAATT
*
73951166 -TAAAATTTATTAAAAATT-TGAAAAAAATT
1 ATAAAAATTATTAAAAATTAT--AAAAAATT
* *
73951195 ATAAAAATCATAAAAAAATTATAAAA
1 ATAAAAATTAT-TAAAAATTATAAAA
73951221 TATATAGAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
27 1 0.01
29 39 0.57
30 21 0.30
31 7 0.10
32 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (29 bp):
ATAAAAATTATTAAAAATTATAAAAAATT
Found at i:73951226 original size:29 final size:28
Alignment explanation
Indices: 73951189--73951261 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 28
73951179 AAATTTGAAA
*
73951189 AAAATTATAAAAATCATA-AAAAAATTAT
1 AAAATTATAAAAAT-ATAGAAAAAAATAT
*
73951217 AAAATATATAGAAATATAGAAAAAAATAT
1 AAAAT-TATAAAAATATAGAAAAAAATAT
* *
73951246 AAAATTTTATAAATAT
1 AAAATTATAAAAATAT
73951262 TAAGTATGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 17 0.44
29 22 0.56
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (28 bp):
AAAATTATAAAAATATAGAAAAAAATAT
Found at i:73952301 original size:9 final size:9
Alignment explanation
Indices: 73952289--73952408 Score: 57
Period size: 10 Copynumber: 12.4 Consensus size: 9
73952279 TCACTATATA
73952289 TTTTATAATT
1 TTTTATAA-T
*
73952299 TTTTACAATT
1 TTTTATAA-T
73952309 TTTTATAAAT
1 TTTTAT-AAT
73952319 TTTT-TACTAT
1 TTTTATA--AT
*
73952329 TTTTATAAC
1 TTTTATAAT
* *
73952338 TTTTGTGAT
1 TTTTATAAT
73952347 TTTTATAAT
1 TTTTATAAT
*
73952356 TTTT-TCTAT
1 TTTTAT-AAT
73952365 TTTTAATAAAT
1 TTTT-AT-AAT
* *
73952376 TTTAAATATT
1 TTT-TATAAT
73952386 TTTCTATAAT
1 TTT-TATAAT
73952396 TTTCTAT-AT
1 TTT-TATAAT
73952405 TTTT
1 TTTT
73952409 TCTATAACTT
Statistics
Matches: 86, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
8 3 0.03
9 30 0.35
10 41 0.48
11 12 0.14
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:73952319 original size:11 final size:10
Alignment explanation
Indices: 73952289--73952415 Score: 77
Period size: 9 Copynumber: 12.8 Consensus size: 10
73952279 TCACTATATA
73952289 TTTTATAATT
1 TTTTATAATT
*
73952299 TTTTACAATT
1 TTTTATAATT
73952309 TTTTATAAATT
1 TTTTAT-AATT
73952320 TTTTACT-A-T
1 TTTTA-TAATT
*
73952329 TTTTATAA-C
1 TTTTATAATT
* *
73952338 TTTTGTGA-T
1 TTTTATAATT
73952347 TTTTATAATT
1 TTTTATAATT
*
73952357 TTTTCT-ATT
1 TTTTATAATT
* *
73952366 TTTAATAA-A
1 TTTTATAATT
*
73952375 TTTTAAATATT
1 TTTTATA-ATT
73952386 TTTCTATAATT
1 TTT-TATAATT
* *
73952397 TTCTATATTT
1 TTTTATAATT
73952407 TTTCTATAA
1 TTT-TATAA
73952416 CTTCTATTGG
Statistics
Matches: 88, Mismatches: 20, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
8 1 0.01
9 31 0.35
10 31 0.35
11 21 0.24
12 4 0.05
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:73952366 original size:18 final size:19
Alignment explanation
Indices: 73952289--73952408 Score: 95
Period size: 21 Copynumber: 6.2 Consensus size: 19
73952279 TCACTATATA
*
73952289 TTTTATAATTTTTTACAATT
1 TTTTATAATTTTTTACTA-T
73952309 TTTTATAAATTTTTTACTAT
1 TTTTAT-AATTTTTTACTAT
* *
73952329 TTTTATAACTTTTGT--GAT
1 TTTTATAA-TTTTTTACTAT
73952347 TTTTATAATTTTTT-CTAT
1 TTTTATAATTTTTTACTAT
* * *
73952365 TTTTAATAAATTTTAAATATT
1 TTTT-ATAATTTTTTACTA-T
*
73952386 TTTCTATAATTTTCTA-TAT
1 TTT-TATAATTTTTTACTAT
73952405 TTTT
1 TTTT
73952409 TCTATAACTT
Statistics
Matches: 82, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
17 5 0.06
18 17 0.21
19 14 0.17
20 22 0.27
21 23 0.28
22 1 0.01
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTATAATTTTTTACTAT
Found at i:73952394 original size:21 final size:21
Alignment explanation
Indices: 73952362--73952415 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
73952352 TAATTTTTTC
*
73952362 TATTTTT-AATAAATTTTAAA
1 TATTTTTCTATAAATTTTAAA
**
73952382 TATTTTTCTAT-AATTTTCTA
1 TATTTTTCTATAAATTTTAAA
73952402 TATTTTTTCTATAA
1 TA-TTTTTCTATAA
73952416 CTTCTATTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 16 0.57
21 11 0.39
22 1 0.04
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (21 bp):
TATTTTTCTATAAATTTTAAA
Found at i:73952404 original size:20 final size:19
Alignment explanation
Indices: 73952283--73952409 Score: 80
Period size: 20 Copynumber: 6.5 Consensus size: 19
73952273 TCTATATCAC
* *
73952283 TATATATTTTATAATTTTT
1 TATATTTTTTATAATTTTA
* *
73952302 TACAATTTTTTATAAATTTTT
1 TA-TATTTTTTAT-AATTTTA
*
73952323 TACTA-TTTTTATAACTTTTG
1 TA-TATTTTTTATAA-TTTTA
* *
73952343 T-GA-TTTTTATAATTTTT
1 TATATTTTTTATAATTTTA
* *
73952360 TCTATTTTTAATAAATTTTA
1 TATATTTTTTAT-AATTTTA
* *
73952380 AATATTTTTCTATAATTTTC
1 TATATTTTT-TATAATTTTA
73952400 TATATTTTTT
1 TATATTTTTT
73952410 CTATAACTTC
Statistics
Matches: 87, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
17 5 0.06
18 11 0.13
19 11 0.13
20 47 0.54
21 13 0.15
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.65
Consensus pattern (19 bp):
TATATTTTTTATAATTTTA
Found at i:73956146 original size:40 final size:40
Alignment explanation
Indices: 73956102--73956243 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 40
73956092 CAAACACACC
* **
73956102 AATTTGGCACCCAATGCCTCATCGGATAATGTGAAGTAAT
1 AATTTGACACCCAATGCCTCATCGGATAATCCGAAGTAAT
* * *
73956142 AATTTGACACCCAATGTCTCATCGGCTAAACCGAAGT-A-
1 AATTTGACACCCAATGCCTCATCGGATAATCCGAAGTAAT
* * * *
73956180 AA-TTGGCACCTAGTGCCTCATCGAATATATCCGAAGTAAT
1 AATTTGACACCCAATGCCTCATCGGATA-ATCCGAAGTAAT
* *
73956220 AATTTGACACCCAGTGTCTCATCG
1 AATTTGACACCCAATGCCTCATCG
73956244 ACTTGAAGTC
Statistics
Matches: 82, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 19 0.23
38 10 0.12
39 2 0.02
40 33 0.40
41 18 0.22
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (40 bp):
AATTTGACACCCAATGCCTCATCGGATAATCCGAAGTAAT
Found at i:73958549 original size:34 final size:33
Alignment explanation
Indices: 73958464--73958575 Score: 134
Period size: 34 Copynumber: 3.3 Consensus size: 33
73958454 TTTAGTGTTC
* *
73958464 TTTTTTAAAAATTAATTAAATTAGGGTTTAGGG
1 TTTTTAAAAAATTAATTAAATTAGGGTTTAGTG
* * * * *
73958497 ATTTAAAATAAATAAATTAAACTGGGGTTTAGTG
1 TTTTTAAA-AAATTAATTAAATTAGGGTTTAGTG
*
73958531 TTTTTAAGAAAATTAATTAAATTAGGGTTTAGTT
1 TTTTTAA-AAAATTAATTAAATTAGGGTTTAGTG
73958565 TTTTTAAAAAA
1 TTTTTAAAAAA
73958576 GAATATTGTG
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
33 9 0.14
34 54 0.84
35 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (33 bp):
TTTTTAAAAAATTAATTAAATTAGGGTTTAGTG
Found at i:73959089 original size:126 final size:126
Alignment explanation
Indices: 73958631--73959146 Score: 619
Period size: 125 Copynumber: 4.1 Consensus size: 126
73958621 ATAAGGATTT
* * * * *
73958631 TTTTTCTACAGTGGTTCCTGAAAAAATAATTTTGAGAATACGGTTCTAAACAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAAAAGACGGTTCTGAACAAATAGTGTCAAAA
* * * * * * * *
73958696 ATGCTTCAAGCAGGATGCATTATCAGTAAAAATACTGAAAAAAGCTCACACGTAGACGTTC
66 ACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCATGTCGACGCTC
* ** *
73958757 TTTTTCTACAGTAATTCCT-AAAAAATAATTTTGAAAAGACATTTATGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAAAAGACGGTTCTGAACAAATAGTGTCAAAA
* * * * ** * *
73958821 GCGCTTCAAGTAGGATGCACTGTCAACAAAATTACCAAAAAAAGCTCCCATGTGGACGCTA
66 ACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCATGTCGACGCTC
* * *
73958882 TTTTTCTATAGTAGTTCTTG-AAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAAAAGACGGTTCTGAACAAATAGTGTCAAAA
* * * * *
73958946 ATGCTTCAGGCATGATGCACTGTCAGCAAAATTGA-TGAAAAAAGCTCCCATATCGACGCTC
66 ACGCTTCAAGCAGGATGCACTATCAGCAAAATT-ACTGAAAAAAGCTCCCATGTCGACGCTC
* * *
73959007 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAAAAGATGGTTCTGAACAAATAGAGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAAAAGACGGTTCTGAACAAATAGTGTCAAAA
* * *
73959072 ACGCTTCAAGCAGGATGCACTATCAGCAAAATTGA-TGAAAAAA-CTCTCATGTCGACACAC
66 ACGCTTCAAGCAGGATGCACTATCAGCAAAATT-ACTGAAAAAAGCTCCCATGTCGACGCTC
*
73959132 TTTTTCTACAATAGT
1 TTTTTCTACAGTAGT
73959147 CAAGGGTGCT
Statistics
Matches: 330, Mismatches: 57, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
125 233 0.71
126 97 0.29
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAAAAGACGGTTCTGAACAAATAGTGTCAAAA
ACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCATGTCGACGCTC
Found at i:73964946 original size:17 final size:17
Alignment explanation
Indices: 73964924--73964956 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73964914 TCATAATATT
73964924 ATTAAT-TAGTTCAAATA
1 ATTAATATAGTT-AAATA
73964941 ATTAATATAGTTAAAT
1 ATTAATATAGTTAAAT
73964957 TTTTTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (17 bp):
ATTAATATAGTTAAATA
Found at i:73966236 original size:15 final size:16
Alignment explanation
Indices: 73966215--73966260 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
73966205 TAGGATAGAA
73966215 AGAAAATTAGAATGGT
1 AGAAAATTAGAATGGT
* *
73966231 -GAAAATTTGTAAGGGT
1 AGAAAATTAG-AATGGT
73966247 AGAAAATTA-AATGG
1 AGAAAATTAGAATGG
73966261 ATGGAAAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
15 12 0.50
16 5 0.21
17 7 0.29
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (16 bp):
AGAAAATTAGAATGGT
Found at i:73966810 original size:20 final size:21
Alignment explanation
Indices: 73966785--73966827 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
73966775 AATTGTTTTG
73966785 AATTTTTATGAG-CTTTTTAT
1 AATTTTTATGAGTCTTTTTAT
* *
73966805 AATTTTTTTGAGTTTTTTTAT
1 AATTTTTATGAGTCTTTTTAT
73966826 AA
1 AA
73966828 ATTGTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.26, C:0.02, G:0.09, T:0.63
Consensus pattern (21 bp):
AATTTTTATGAGTCTTTTTAT
Found at i:73967020 original size:23 final size:23
Alignment explanation
Indices: 73966977--73967021 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
73966967 TTTGACTCCC
*
73966977 AATGACCAAATTTAACTAAAAAA
1 AATGACCAAATTTAACAAAAAAA
*
73967000 AATGAGCCAAA-TTGACAAAAAA
1 AATGA-CCAAATTTAACAAAAAA
73967022 TATAAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.60, C:0.13, G:0.09, T:0.18
Consensus pattern (23 bp):
AATGACCAAATTTAACAAAAAAA
Found at i:73967995 original size:21 final size:20
Alignment explanation
Indices: 73967955--73967998 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
73967945 TTTATTTTGT
73967955 TTATTTAAAAAATAAATAAA
1 TTATTTAAAAAATAAATAAA
*
73967975 TTATTTCATAAAAA-AAGTAAA
1 TTATTT-A-AAAAATAAATAAA
73967996 TTA
1 TTA
73967999 ATAATTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 10 0.48
22 5 0.24
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
TTATTTAAAAAATAAATAAA
Found at i:73968013 original size:24 final size:24
Alignment explanation
Indices: 73967954--73968014 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
73967944 TTTTATTTTG
*
73967954 TTTATTTAAAAAATAAATAAATTAT
1 TTTA-TTAAAAAATAAATAAATAAT
* * *
73967979 TTCATAAAAAAAGTAAATTAATAAT
1 TTTATTAAAAAA-TAAATAAATAAT
73968004 TTTATTAAAAA
1 TTTATTAAAAA
73968015 TTCTATTCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 7 0.24
25 22 0.76
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (24 bp):
TTTATTAAAAAATAAATAAATAAT
Found at i:73972264 original size:14 final size:14
Alignment explanation
Indices: 73972245--73972271 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73972235 AATTCAAAGT
73972245 TAAATAAATTAAAA
1 TAAATAAATTAAAA
73972259 TAAATAAATTAAA
1 TAAATAAATTAAA
73972272 TATGAGAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAATAAATTAAAA
Found at i:73973962 original size:45 final size:45
Alignment explanation
Indices: 73973898--73973989 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
73973888 CAAGAGATGC
**
73973898 GTAGGGTTCCTTCCTGATTCTTTGCCTAAGGACAACTTCTACATT
1 GTAGGGTTCCTTCCTGATTCTTTGCAGAAGGACAACTTCTACATT
*
73973943 GTAGGGTTCCTTTCTGATTCTTTGCAGAAGGACAACTTCTACATT
1 GTAGGGTTCCTTCCTGATTCTTTGCAGAAGGACAACTTCTACATT
73973988 GT
1 GT
73973990 GATCACTTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (45 bp):
GTAGGGTTCCTTCCTGATTCTTTGCAGAAGGACAACTTCTACATT
Found at i:73977664 original size:29 final size:29
Alignment explanation
Indices: 73977553--73977667 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
73977543 TACAAACATG
* *
73977553 CATATGGCCCATTGGGCCCAA-TCACATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * *
73977581 CATATGGCCCATCT-GGCCTAGTTCAAATT
1 CATATGGCCCAT-TAGGCCCAATTCATATT
* *
73977610 CTTATGGCCCACTAGGCCCAATTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
73977639 CATATGGCCCATTAGGCCCAATTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
73977668 ATACTCATAC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
28 18 0.24
29 56 0.76
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:73977904 original size:8 final size:8
Alignment explanation
Indices: 73977891--73977925 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
73977881 CTTTCAGCTC
73977891 TTCGGCAT
1 TTCGGCAT
73977899 TTCGGCAT
1 TTCGGCAT
*
73977907 TTCGGCTT
1 TTCGGCAT
73977915 TTCGGCAT
1 TTCGGCAT
73977923 TTC
1 TTC
73977926 AGCTTTTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.43
Consensus pattern (8 bp):
TTCGGCAT
Found at i:73977930 original size:16 final size:16
Alignment explanation
Indices: 73977898--73977932 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
73977888 CTCTTCGGCA
*
73977898 TTTCGGCATTTCGGCT
1 TTTCGGCATTTCAGCT
73977914 TTTCGGCATTTCAGCT
1 TTTCGGCATTTCAGCT
73977930 TTT
1 TTT
73977933 GGCGATTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.23, G:0.20, T:0.49
Consensus pattern (16 bp):
TTTCGGCATTTCAGCT
Found at i:73979294 original size:19 final size:19
Alignment explanation
Indices: 73979270--73979315 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
73979260 CAACTCTACC
*
73979270 CCCCGAAAAGAAATTTTGT
1 CCCCGAAAAGAAATTTCGT
73979289 CCCCGAAAAGAAATTTCGT
1 CCCCGAAAAGAAATTTCGT
*
73979308 CCTCGAAA
1 CCCCGAAA
73979316 TTTCCAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (19 bp):
CCCCGAAAAGAAATTTCGT
Found at i:73982192 original size:29 final size:30
Alignment explanation
Indices: 73982130--73982244 Score: 134
Period size: 29 Copynumber: 4.0 Consensus size: 30
73982120 TACATACATG
*
73982130 CATATGGCCCA-CT-GGTCCCAA-TCACATT
1 CATATGGCCCATCTAGG-CCCAATTCATATT
* *
73982158 CATATGACCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
73982187 CTTATGGCCCA-CTAGGCCCAATTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
73982216 CATATGGCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
73982245 ACACTCATGC
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
28 16 0.21
29 59 0.79
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:73982234 original size:58 final size:57
Alignment explanation
Indices: 73982132--73982244 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 57
73982122 CATACATGCA
**
73982132 TATGGCCCACTGGTCCCAATCACATTCATATGACCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTGGTCCCAATCACATTCATATGACCCATCTGGCCCAAATCATATTCT
* *
73982189 TATGGCCCACTAGG-CCCAATTCATATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACT-GGTCCCAA-TCACATTCATATGACCCATCT-GGCCCAAATCATATT
73982245 ACACTCATGC
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
57 17 0.35
58 32 0.65
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTGGTCCCAATCACATTCATATGACCCATCTGGCCCAAATCATATTCT
Found at i:73982480 original size:16 final size:16
Alignment explanation
Indices: 73982459--73982493 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
73982449 GTAGCCCAAA
*
73982459 TTTCGGCATTTCGACT
1 TTTCGGCATTTCAACT
73982475 TTTCGGCATTTCAACT
1 TTTCGGCATTTCAACT
73982491 TTT
1 TTT
73982494 ACCGATTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.23, G:0.14, T:0.49
Consensus pattern (16 bp):
TTTCGGCATTTCAACT
Found at i:73987679 original size:15 final size:15
Alignment explanation
Indices: 73987659--73987702 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
73987649 AACCGTGGCC
*
73987659 TTCTTTCTTTCCTTT
1 TTCTTTATTTCCTTT
*
73987674 TTCTTTATTTCATTT
1 TTCTTTATTTCCTTT
73987689 TT-TTTATTT-CTTT
1 TTCTTTATTTCCTTT
73987702 T
1 T
73987703 ATTTTAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 4 0.15
14 7 0.27
15 15 0.58
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (15 bp):
TTCTTTATTTCCTTT
Found at i:73987694 original size:14 final size:13
Alignment explanation
Indices: 73987670--73987708 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
73987660 TCTTTCTTTC
73987670 CTTTTTCTTTATTT
1 CTTTTT-TTTATTT
73987684 CATTTTTTTTATTT
1 C-TTTTTTTTATTT
73987698 CTTTTATTTTA
1 CTTTT-TTTTA
73987709 ATTACTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.17
14 14 0.61
15 5 0.22
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTTTTTTATTT
Found at i:73988833 original size:28 final size:28
Alignment explanation
Indices: 73988793--73988850 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
73988783 AAACTAATCA
73988793 TACTTGATTGGTTTGTAAGAATGAATTT
1 TACTTGATTGGTTTGTAAGAATGAATTT
73988821 TACTTGATTGGTTTGTAAGAATGAATTT
1 TACTTGATTGGTTTGTAAGAATGAATTT
73988849 TA
1 TA
73988851 ATGGAAGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.29, C:0.03, G:0.21, T:0.47
Consensus pattern (28 bp):
TACTTGATTGGTTTGTAAGAATGAATTT
Found at i:73993388 original size:21 final size:21
Alignment explanation
Indices: 73993362--73993402 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
73993352 AAAAGCAAAC
73993362 AAATGAAGATCAACCCAGCAA
1 AAATGAAGATCAACCCAGCAA
73993383 AAATGAAGATCAACCCAGCA
1 AAATGAAGATCAACCCAGCA
73993403 GCAGAAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.51, C:0.24, G:0.15, T:0.10
Consensus pattern (21 bp):
AAATGAAGATCAACCCAGCAA
Found at i:73996291 original size:13 final size:13
Alignment explanation
Indices: 73996273--73996298 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73996263 ATTTTAAAAT
73996273 TTTTAAAAAATTA
1 TTTTAAAAAATTA
73996286 TTTTAAAAAATTA
1 TTTTAAAAAATTA
73996299 AATACTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTTAAAAAATTA
Found at i:74009189 original size:40 final size:40
Alignment explanation
Indices: 74009095--74009238 Score: 164
Period size: 40 Copynumber: 3.6 Consensus size: 40
74009085 TACTCGAATG
* *
74009095 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGATAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * **
74009136 ACATCCGGACTAAGAT-CTAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
74009176 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
74009216 ATATCCGGGTTAAGACCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
74009239 TCTTGTGTGA
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 59 0.69
41 25 0.29
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:74013321 original size:40 final size:40
Alignment explanation
Indices: 74013273--74013410 Score: 206
Period size: 40 Copynumber: 3.5 Consensus size: 40
74013263 GGTACTTATA
* *
74013273 CCTGATTGCACACACGTGCCCCTATCTGTACCTTGGTACC
1 CCTGATTGCACATACGTGCCCCTATTTGTACCTTGGTACC
* *
74013313 CCTGATTGCATATATGTGCCCCTATTTGTA-CTTCGGTACC
1 CCTGATTGCACATACGTGCCCCTATTTGTACCTT-GGTACC
*
74013353 CCTGATTGCACATACGTGCCCCTATTTGTACTTTGGTACC
1 CCTGATTGCACATACGTGCCCCTATTTGTACCTTGGTACC
*
74013393 ACTGATTGCACATACGTG
1 CCTGATTGCACATACGTG
74013411 TCCATGTTTA
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.03
40 83 0.94
41 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.33
Consensus pattern (40 bp):
CCTGATTGCACATACGTGCCCCTATTTGTACCTTGGTACC
Found at i:74013354 original size:20 final size:20
Alignment explanation
Indices: 74013331--74013392 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
74013321 CATATATGTG
74013331 CCCCTATTTGTACTTCGGTA
1 CCCCTATTTGTACTTCGGTA
* * *
74013351 CCCCTGA-TTGCACATAC-GTG
1 CCCCT-ATTTGTAC-TTCGGTA
*
74013371 CCCCTATTTGTACTTTGGTA
1 CCCCTATTTGTACTTCGGTA
74013391 CC
1 CC
74013393 ACTGATTGCA
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
19 2 0.06
20 26 0.84
21 3 0.10
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.35
Consensus pattern (20 bp):
CCCCTATTTGTACTTCGGTA
Found at i:74014429 original size:12 final size:12
Alignment explanation
Indices: 74014412--74014453 Score: 68
Period size: 12 Copynumber: 3.5 Consensus size: 12
74014402 TCAGAGAGTT
74014412 ACACGGGCATGG
1 ACACGGGCATGG
74014424 ACACGGGCATGG
1 ACACGGGCATGG
74014436 ACACGGGC-TGGG
1 ACACGGGCAT-GG
74014448 ACACGG
1 ACACGG
74014454 CCGCGTGTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 1 0.03
12 28 0.97
ACGTcount: A:0.24, C:0.26, G:0.43, T:0.07
Consensus pattern (12 bp):
ACACGGGCATGG
Found at i:74022097 original size:25 final size:25
Alignment explanation
Indices: 74022069--74022118 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
74022059 GATTTAAGTT
74022069 ACAATTTTATGGTAATGCTCCGTAA
1 ACAATTTTATGGTAATGCTCCGTAA
74022094 ACAATTTTATGGTAATGCTCCGTAA
1 ACAATTTTATGGTAATGCTCCGTAA
74022119 CCCTATTTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (25 bp):
ACAATTTTATGGTAATGCTCCGTAA
Found at i:74036206 original size:24 final size:25
Alignment explanation
Indices: 74036172--74036223 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
74036162 GGAAGAAAAT
*
74036172 AGAGAACAATG-GAAGAGAA-TGAAG
1 AGAGAAAAATGAG-AGAGAAGTGAAG
74036196 AGAGAAAAATGAGAGAGAAGTGAAG
1 AGAGAAAAATGAGAGAGAAGTGAAG
74036221 AGA
1 AGA
74036224 TGAGAAGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 16 0.64
25 9 0.36
ACGTcount: A:0.56, C:0.02, G:0.35, T:0.08
Consensus pattern (25 bp):
AGAGAAAAATGAGAGAGAAGTGAAG
Found at i:74038031 original size:42 final size:42
Alignment explanation
Indices: 74037974--74038088 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 42
74037964 ATCAATTTGA
*
74037974 GATTTACGTGTAAGACCATGTTTGGGACATCGACATCG-TATTT
1 GATTT-CGTGTAAGACCATGTTTGGGACATAG-CATCGATATTT
* * *
74038017 GATTTCGTGTAAGACCCTATCTGGGACAGTAGCATCGATATTT
1 GATTTCGTGTAAGACCATGTTTGGGACA-TAGCATCGATATTT
* * *
74038060 GATTACATGTAAGACCACGTTTGGGACAT
1 GATTTCGTGTAAGACCATGTTTGGGACAT
74038089 TGGCATTGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTTTGGGACATAGCATCGATATTT
Found at i:74044806 original size:49 final size:48
Alignment explanation
Indices: 74044734--74044908 Score: 251
Period size: 49 Copynumber: 3.5 Consensus size: 48
74044724 TGAGGTCACG
74044734 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAATTGGTCGCA
* * * * * *
74044783 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAA-TT-GGTCGCA
74044834 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACA-GATAATTGGTCGCA
74044883 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
74044909 TGCGCACCAG
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
49 66 0.60
50 5 0.05
51 39 0.35
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATAATTGGTCGCA
Found at i:74044902 original size:100 final size:100
Alignment explanation
Indices: 74044729--74044912 Score: 352
Period size: 100 Copynumber: 1.8 Consensus size: 100
74044719 TATTGTGAGG
74044729 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
74044794 AAGTGCAGGCTACTATGCGTATCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTATCTGATAACTTCGA
74044829 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGGATAATTGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GATAATTGGTCGCATGTGTAGTAC
74044893 TAAGTGCAGGCTACTATGCG
65 TAAGTGCAGGCTACTATGCG
74044913 CACCAGATAG
Statistics
Matches: 83, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
99 2 0.02
100 81 0.98
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTATCTGATAACTTCGA
Found at i:74060653 original size:47 final size:46
Alignment explanation
Indices: 74060583--74060751 Score: 177
Period size: 47 Copynumber: 3.6 Consensus size: 46
74060573 TTTTGTGTGT
*
74060583 TAGTGTAAGACATGTCTGAGACATGGCATCAGCATT-GAGATG-AGAGC
1 TAGTGTAAGACATGTCTGGGACAT-GCATCAGC-TTCGAGATGTA-AGC
*
74060630 TAGTGTAAGACATGTCTGGGACATGCATTCGGCTTCGAGATGTAAGC
1 TAGTGTAAGACATGTCTGGGACATGCA-TCAGCTTCGAGATGTAAGC
* * *
74060677 TAGTGTAAGACATGTCTTGGACATGCATCGGCTACGAGATGT---C
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGATGTAAGC
* *
74060720 TCAATGTAAGACCATGTTTGGGACATGGCATC
1 T-AGTGTAAGA-CATGTCTGGGACAT-GCATC
74060752 GGCACGTATA
Statistics
Matches: 109, Mismatches: 7, Indels: 13
0.84 0.05 0.10
Matches are distributed among these distances:
43 2 0.02
44 8 0.07
45 12 0.11
46 24 0.22
47 62 0.57
48 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGATGTAAGC
Found at i:74060781 original size:48 final size:46
Alignment explanation
Indices: 74060678--74060899 Score: 159
Period size: 48 Copynumber: 4.7 Consensus size: 46
74060668 GATGTAAGCT
* *
74060678 AGTGTAAGA-CATGTCTTGGACAT-GCATCGGCTACG--AGATGTCTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGTTAGA-GTGTC
* *
74060722 AATGTAAGACCATGTTTGGGACATGGCATCGGCACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGT-TAGA-GTGTC
* * * * ** *
74060770 AGTGTAAGACCATGTCTGAGACATGGCGTCGATCTCGATTTCAATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCACG-TTAGAGT-GTC
* ** * *
74060819 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGA-TAAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTTAGAGT--GTC
*
74060865 TAGTGTAAGACCATGGCTGGGACATGGCATCGGCA
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
74060900 TTATACCCTA
Statistics
Matches: 144, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
44 8 0.06
45 15 0.10
46 10 0.07
47 35 0.24
48 38 0.26
49 37 0.26
50 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTTAGAGTGTC
Found at i:74065594 original size:30 final size:30
Alignment explanation
Indices: 74065536--74065596 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74065526 TTCCTGAGCC
*
74065536 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTATAAATATGCAAAAGTT
* * * *
74065566 TAGGGGAAAAATTATAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTATAAATATGCAAAAGTT
74065596 T
1 T
74065597 GAGTTAACGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.05, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTATAAATATGCAAAAGTT
Found at i:74075816 original size:21 final size:20
Alignment explanation
Indices: 74075785--74075823 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
74075775 TAAGCATGTG
74075785 TTTTGATGTTTAATGATAAA
1 TTTTGATGTTTAATGATAAA
*
74075805 TTTTGAATGTTTGATGATA
1 TTTTG-ATGTTTAATGATA
74075824 GTTATACAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (20 bp):
TTTTGATGTTTAATGATAAA
Found at i:74076787 original size:5 final size:5
Alignment explanation
Indices: 74076779--74076804 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
74076769 AAAATAAAAT
74076779 TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA T
74076805 GAAATAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:74077257 original size:48 final size:48
Alignment explanation
Indices: 74077185--74077285 Score: 166
Period size: 48 Copynumber: 2.1 Consensus size: 48
74077175 AGGGGTGTTA
* *
74077185 CACTTCGGGTGCGAGATTCATTGATTTGGCTTTGGGCCATGATATTAG
1 CACTTCGGGTGCGAGATACATTGATTTGGCTTCGGGCCATGATATTAG
* *
74077233 TACTTCGGGTGGGAGATACATTGATTTGGCTTCGGGCCATGATATTAG
1 CACTTCGGGTGCGAGATACATTGATTTGGCTTCGGGCCATGATATTAG
74077281 CACTT
1 CACTT
74077286 AGTGTGTGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.35
Consensus pattern (48 bp):
CACTTCGGGTGCGAGATACATTGATTTGGCTTCGGGCCATGATATTAG
Found at i:74092710 original size:42 final size:42
Alignment explanation
Indices: 74092592--74092712 Score: 152
Period size: 43 Copynumber: 2.9 Consensus size: 42
74092582 ACCATACCAT
**
74092592 TGTCATATCCCAGATATGGTCTTACATGGGATCTCATATCGA
1 TGTCATATCCCAGATATGGTCTTACATGAAATCTCATATCGA
* * *
74092634 TGCCAATAGCCCAGCTATGGTCTTACATGAAATCTCATATCGA
1 TGTC-ATATCCCAGATATGGTCTTACATGAAATCTCATATCGA
* * * *
74092677 TGTCATATCTCAAATATGGTCTTACACGTAATCTCA
1 TGTCATATCCCAGATATGGTCTTACATGAAATCTCA
74092713 ACTAACCCTA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 29 0.44
43 37 0.56
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
TGTCATATCCCAGATATGGTCTTACATGAAATCTCATATCGA
Found at i:74094435 original size:43 final size:43
Alignment explanation
Indices: 74094388--74094506 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 43
74094378 CCTCGATTGA
**
74094388 GATTTACATATAAGACCATGTCTGGGACATCGGCAT-TGTATCT
1 GATTTACATATAAGACCATGTCTGGGACATCGGCATCAATAT-T
** * * **
74094431 GATTT-TGTGTAAGACCCTGTCTGGGACAGAGGCATCAATATT
1 GATTTACATATAAGACCATGTCTGGGACATCGGCATCAATATT
* * * *
74094473 GAATTACATATAAGACCACGTCCGGGACGTCGGC
1 GATTTACATATAAGACCATGTCTGGGACATCGGC
74094507 TTTATACTTG
Statistics
Matches: 56, Mismatches: 18, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
42 29 0.52
43 27 0.48
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
GATTTACATATAAGACCATGTCTGGGACATCGGCATCAATATT
Found at i:74096217 original size:3 final size:3
Alignment explanation
Indices: 74096209--74096246 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
74096199 TAAACATGCA
*
74096209 AAT AAT AAT AAT AAT AAT AAT AAT AAT CAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
74096247 ATTCATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:74102148 original size:10 final size:10
Alignment explanation
Indices: 74102108--74102155 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
74102098 TAAATTTTAA
74102108 AAAATTTATT
1 AAAATTTATT
* *
74102118 AAATTTTAAT
1 AAAATTTATT
*
74102128 AAAAATT-TT
1 AAAATTTATT
74102137 AAAATTTATT
1 AAAATTTATT
*
74102147 AAAAATTAT
1 AAAATTTAT
74102156 ATTTTCTATA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
9 7 0.23
10 23 0.77
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AAAATTTATT
Found at i:74102205 original size:19 final size:18
Alignment explanation
Indices: 74102099--74102205 Score: 69
Period size: 19 Copynumber: 5.7 Consensus size: 18
74102089 TAATAAAAAT
74102099 AAATTTTA-AAAAATTTA
1 AAATTTTATAAAAATTTA
74102116 TTAAATTTTAATAAAAATTTTA
1 --AAATTTT-ATAAAAA-TTTA
74102138 AAA-TTTATTAAAAA-TTA
1 AAATTTTA-TAAAAATTTA
* *
74102155 TATTTTCTATAAAAATTGTA
1 AAATTT-TATAAAAATT-TA
***
74102175 AAAAAATA-AAAAATTGTA
1 AAATTTTATAAAAATT-TA
74102193 AAATTTTATAAAA
1 AAATTTTATAAAA
74102206 GTCATAAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
17 4 0.06
18 24 0.35
19 25 0.36
20 7 0.10
21 5 0.07
22 4 0.06
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (18 bp):
AAATTTTATAAAAATTTA
Found at i:74102303 original size:11 final size:11
Alignment explanation
Indices: 74102287--74102330 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
74102277 ACATATGACG
*
74102287 AAAAATGATAA
1 AAAAATTATAA
74102298 AAAAA-TA-AA
1 AAAAATTATAA
*
74102307 AAAAATTATAG
1 AAAAATTATAA
74102318 AAAAATTATAA
1 AAAAATTATAA
74102329 AA
1 AA
74102331 TGTTTCTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
9 7 0.25
10 3 0.11
11 18 0.64
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (11 bp):
AAAAATTATAA
Done.