Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 226 of 316
Found at i:74102330 original size:9 final size:10
Alignment explanation
Indices: 74102287--74102330 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
74102277 ACATATGACG
*
74102287 AAAAATGATA
1 AAAAATTATA
* *
74102297 AAAAAATAAA
1 AAAAATTATA
74102307 AAAAATTATA
1 AAAAATTATA
74102317 GAAAAATTATA
1 -AAAAATTATA
74102328 AAA
1 AAA
74102331 TGTTTCTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (10 bp):
AAAAATTATA
Found at i:74102431 original size:29 final size:29
Alignment explanation
Indices: 74102397--74102494 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 29
74102387 TTATATTTTG
74102397 TATAATTTTCTTACGA-TTTTATAAAATTT
1 TATAATTTT-TTACGATTTTTATAAAATTT
*
74102426 TATAATTTTTTACTATTTTTATAAAATTT
1 TATAATTTTTTACGATTTTTATAAAATTT
* * * * *
74102455 TACAATATTTTA-TATTTTTTTACAATTTT
1 TATAATTTTTTACGATTTTTATA-AAATTT
*
74102484 TATATTTTTTT
1 TATAATTTTTT
74102495 CTAATTTTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
28 14 0.24
29 45 0.76
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (29 bp):
TATAATTTTTTACGATTTTTATAAAATTT
Found at i:74102435 original size:19 final size:19
Alignment explanation
Indices: 74102413--74102551 Score: 65
Period size: 19 Copynumber: 7.3 Consensus size: 19
74102403 TTTCTTACGA
74102413 TTTTATAAAATTTTATAAT
1 TTTTATAAAATTTTATAAT
* * *
74102432 TTTT-TACTATTTTTATAAAA
1 TTTTATA-AAATTTTAT-AAT
* *
74102452 TTTTACAATATTTTAT-AT
1 TTTTATAAAATTTTATAAT
* *
74102470 TTTTTTACAATTTT-TATAT
1 TTTTATAAAATTTTATA-AT
* **
74102489 TTTTTTCTAATTTTAATAAT
1 TTTTATAAAATTTT-ATAAT
* *
74102509 TTTT-TAATATTTTA-ATT
1 TTTTATAAAATTTTATAAT
*
74102526 TTTTAAATAAAA-TTTATAGT
1 TTTT--ATAAAATTTTATAAT
74102546 TTTTAT
1 TTTTAT
74102552 TTTTTTGTAC
Statistics
Matches: 89, Mismatches: 20, Indels: 23
0.67 0.15 0.17
Matches are distributed among these distances:
17 7 0.08
18 16 0.18
19 35 0.39
20 28 0.31
21 3 0.03
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTTATAAAATTTTATAAT
Found at i:74102455 original size:39 final size:37
Alignment explanation
Indices: 74102412--74102521 Score: 112
Period size: 39 Copynumber: 2.9 Consensus size: 37
74102402 TTTTCTTACG
74102412 ATTTTATAAAATTTTATAATTTTTTACTATTTTTATAAA
1 ATTTTATAAAATTTTATAATTTTTTACTATTTTTAT--A
* * * *
74102451 ATTTTACAATATTTTATATTTTTTTACAATTTTTATA
1 ATTTTATAAAATTTTATAATTTTTTACTATTTTTATA
* * ** *
74102488 TTTTTTTCTAATTTTAATAATTTTTTAATATTTT
1 ATTTTATAAAATTTT-ATAATTTTTTACTATTTT
74102522 AATTTTTTAA
Statistics
Matches: 57, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
37 10 0.18
38 15 0.26
39 32 0.56
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.64
Consensus pattern (37 bp):
ATTTTATAAAATTTTATAATTTTTTACTATTTTTATA
Found at i:74102492 original size:20 final size:20
Alignment explanation
Indices: 74102422--74102529 Score: 95
Period size: 19 Copynumber: 5.7 Consensus size: 20
74102412 ATTTTATAAA
* *
74102422 ATTTTATAATTTTTTACTAT
1 ATTTTATATTTTTTTACAAT
***
74102442 -TTTTATAAAATTTTACAAT
1 ATTTTATATTTTTTTACAAT
74102461 ATTTTATATTTTTTTACAAT
1 ATTTTATATTTTTTTACAAT
74102481 -TTTTATATTTTTTT-CTAAT
1 ATTTTATATTTTTTTAC-AAT
* *
74102500 -TTTAATAATTTTTT--AAT
1 ATTTTATATTTTTTTACAAT
74102517 ATTTTA-ATTTTTT
1 ATTTTATATTTTTT
74102530 AAATAAAATT
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
17 9 0.12
18 5 0.07
19 45 0.60
20 16 0.21
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.66
Consensus pattern (20 bp):
ATTTTATATTTTTTTACAAT
Found at i:74102784 original size:90 final size:88
Alignment explanation
Indices: 74102599--74102786 Score: 213
Period size: 90 Copynumber: 2.1 Consensus size: 88
74102589 GTTTAATTAC
* * *
74102599 TTTTTTTTT-AAGTTTGAGGGTCTTTTTTATGCATTTTAAAAGTTCAAGTACGAAATTGAGTGCA
1 TTTTTTTTTAAAGTTTGAGGGTCTTTTTGATGCATTTTAAAAGTTCAAATACGAAATTGAAT--A
*
74102663 AAAAAAAAGTGGGGCTTAATTGCTT
64 AAAAAAAAGTGGGGCTTAATTGATT
* * *
74102688 TTTTTTTTTAAAGATTTGAGGGTC-TTTTGATGCATTTTGAAATTTCAAATACCTAAA-TGAAT-
1 TTTTTTTTTAAAG-TTTGAGGGTCTTTTTGATGCATTTTAAAAGTTCAAATA-CGAAATTGAATA
*
74102750 AAAAAAAAGTAGGGGCTTAATTTTATT
64 AAAAAAAAGT-GGGGCTTAA-TTGATT
74102777 TTATTTTTTT
1 TT-TTTTTTT
74102787 GAAAAAATTC
Statistics
Matches: 85, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
87 10 0.12
88 9 0.11
89 15 0.18
90 37 0.44
91 14 0.16
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (88 bp):
TTTTTTTTTAAAGTTTGAGGGTCTTTTTGATGCATTTTAAAAGTTCAAATACGAAATTGAATAAA
AAAAAAGTGGGGCTTAATTGATT
Found at i:74114963 original size:32 final size:32
Alignment explanation
Indices: 74114927--74114989 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
74114917 GTCTAATGTG
*
74114927 AAAGCTTCACTTTATAATGATTTTTTTTATAT
1 AAAGCTTCACTTTATAATGATTTTTTATATAT
74114959 AAAGCTTCACTTTATAATGATTTTTTATATA
1 AAAGCTTCACTTTATAATGATTTTTTATATA
74114990 CTTTTATCGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (32 bp):
AAAGCTTCACTTTATAATGATTTTTTATATAT
Found at i:74123646 original size:294 final size:294
Alignment explanation
Indices: 74123109--74123696 Score: 838
Period size: 294 Copynumber: 2.0 Consensus size: 294
74123099 AATACCATTC
* * *
74123109 CGATAAGGCTAATGTAGTGGTAAATGCTCTTAGCCGTAGAGTAATGACCGATATGAGGGCAATGT
1 CGATAAGGCTAATATAGTGGTAAATGCTCTTAGACGTAGAGCAATGACCGATATGAGGGCAATGT
*
74123174 TCGCTCGTCTGAGTTTGTTTGAGGATGGGAGTCTGCTAGCTAAATTGCAGGTTAAACCAACATGG
66 TCGCTCGTCTGAGTTTGTTTGAGGATGGGAGTCTGCTAGCTAAATTACAGGTTAAACCAACATGG
* *
74123239 GTCAATCAGATTCAAGCTAAACAGTTGAGTGATATGTCTCTAGTTTAACATCTACAATAGATTGA
131 GTCAATCAGATTCAAGCTAAACAGTTGAGTGATAAGTCTCTAGTTTAACATCTACAACAGATTGA
* *
74123304 TTCAAGTGAAACTTCAAATTTTAGTTTGAACAACTATAAGGCTTTGTGTTTCAGGGCTCAGATTT
196 TTCAAGTGAAACTTCAAATTTTAGTTTGAACAACTACAAGGCTTTGTGTTTCAGGGATCAGATTT
*
74123369 GTGTGCCTAACAACAAAGAGTTGAGGTGATTGAT
261 GTGTGCCTAACAACAAAGAGTTGAGGCGATTGAT
* * * * ** * **
74123403 CGATAAGGCTAATATGGTGGTAGATGCTCTTAGATGTAGAGCGATGATTGATCTGAGGGTGATGT
1 CGATAAGGCTAATATAGTGGTAAATGCTCTTAGACGTAGAGCAATGACCGATATGAGGGCAATGT
* *
74123468 TCGCTCGTCTGAGTTT-TTTCGAGGATGGGAGTTTGCTAGCTAAATTACAGGTTAAACCAACTTG
66 TCGCTCGTCTGAGTTTGTTT-GAGGATGGGAGTCTGCTAGCTAAATTACAGGTTAAACCAACATG
* * * * *
74123532 GGTCAATTAGATTCGATCTAAACAGTTGAGTGATAAGTCTCTAGTTTAACGTCTGCAACAGATTG
130 GGTCAATCAGATTCAAGCTAAACAGTTGAGTGATAAGTCTCTAGTTTAACATCTACAACAGATTG
* ** * ** * *
74123597 ATTTAAGTGAAACTTCGGATTTTAGTTT-AAGTAGTTACAAGGTTTTGTGTTTCAGGGATCGGAT
195 ATTCAAGTGAAACTTCAAATTTTAGTTTGAA-CAACTACAAGGCTTTGTGTTTCAGGGATCAGAT
*
74123661 TTGTGTGCCTAACAATAAAGAGTTGAGGCGATTGAT
259 TTGTGTGCCTAACAACAAAGAGTTGAGGCGATTGAT
74123697 TCTACAGGAG
Statistics
Matches: 258, Mismatches: 34, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
293 5 0.02
294 253 0.98
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (294 bp):
CGATAAGGCTAATATAGTGGTAAATGCTCTTAGACGTAGAGCAATGACCGATATGAGGGCAATGT
TCGCTCGTCTGAGTTTGTTTGAGGATGGGAGTCTGCTAGCTAAATTACAGGTTAAACCAACATGG
GTCAATCAGATTCAAGCTAAACAGTTGAGTGATAAGTCTCTAGTTTAACATCTACAACAGATTGA
TTCAAGTGAAACTTCAAATTTTAGTTTGAACAACTACAAGGCTTTGTGTTTCAGGGATCAGATTT
GTGTGCCTAACAACAAAGAGTTGAGGCGATTGAT
Found at i:74128710 original size:6 final size:6
Alignment explanation
Indices: 74128699--74128885 Score: 154
Period size: 6 Copynumber: 30.8 Consensus size: 6
74128689 AACCAAAATG
* *
74128699 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAACC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
74128747 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
74128796 AGAATC AGTAA-C AGAATT AGAATC AGAACC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
74128844 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
74128886 GTGAATGCAA
Statistics
Matches: 145, Mismatches: 20, Indels: 32
0.74 0.10 0.16
Matches are distributed among these distances:
5 11 0.08
6 121 0.83
7 10 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:74128714 original size:30 final size:30
Alignment explanation
Indices: 74128678--74128885 Score: 209
Period size: 30 Copynumber: 7.1 Consensus size: 30
74128668 AAGAAACATT
* *
74128678 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* * *
74128708 ATCAGAATCAGTAACAGAATCAGAACCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
74128738 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
74128768 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
*
74128799 ATCAG---T---AACAGAATTAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* * *
74128823 ACCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
74128853 ATCAGAATTACGTG-ACAGAATCAGAATCAGA
1 ATCAGAATTA-G-GAACAGAATCAGAATCAGA
74128884 AT
1 AT
74128886 GTGAATGCAA
Statistics
Matches: 150, Mismatches: 16, Indels: 23
0.79 0.08 0.12
Matches are distributed among these distances:
24 20 0.13
27 1 0.01
28 1 0.01
29 1 0.01
30 81 0.54
31 46 0.31
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:74128799 original size:85 final size:85
Alignment explanation
Indices: 74128699--74128885 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
74128689 AACCAAAATG
*
74128699 AGAATCAGAATCAGAATCAGTAACAGAATCAGAACCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAACCAGAACCAATATTAGTAACAGAATCAGAAT
*
74128764 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
* * *
74128784 AGAATCAGAATCAGAATCAGTAACAGAATTAGAATCAGAACCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAACCAGAACCAATATTAGTAACAGAATCAGAAT
74128849 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
74128869 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
74128886 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAACCAGAACCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:74129040 original size:27 final size:26
Alignment explanation
Indices: 74129003--74129068 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
74128993 AGCATGGCTG
*
74129003 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
74129029 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
74129056 CCAGAATCAGATA
1 CCAGAA-CAGATA
74129069 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:74129073 original size:27 final size:27
Alignment explanation
Indices: 74129003--74129076 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
74128993 AGCATGGCTG
* *
74129003 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
74129029 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
74129056 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
74129077 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:74129083 original size:27 final size:27
Alignment explanation
Indices: 74129027--74129084 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
74129017 GTGACAGAGT
* * *
74129027 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
74129054 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
74129081 CACC
1 CACC
74129085 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:74129289 original size:22 final size:22
Alignment explanation
Indices: 74129241--74129299 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
74129231 GTAAATACGT
*
74129241 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
74129263 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
74129285 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
74129300 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:74129426 original size:27 final size:26
Alignment explanation
Indices: 74129387--74129469 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
74129377 TCGATCGGTC
* *
74129387 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAA
*
74129413 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAA
*
74129440 AACAGATATTTGTGGCATAGCCACCAA
1 AACAGATA-TTGTGGCAGAGCCACCAA
74129467 AAC
1 AAC
74129470 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAA
Found at i:74129698 original size:27 final size:27
Alignment explanation
Indices: 74129668--74129863 Score: 241
Period size: 27 Copynumber: 7.3 Consensus size: 27
74129658 GGAGCAAAAT
* * *
74129668 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74129695 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74129722 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
74129749 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74129776 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74129803 AGTAATTCTACCCTA-TAGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
74129830 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74129857 AGTAATT
1 GGTAATT
74129864 TCACAATCAA
Statistics
Matches: 143, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 2 0.01
27 140 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:74129734 original size:54 final size:54
Alignment explanation
Indices: 74129668--74129863 Score: 268
Period size: 54 Copynumber: 3.6 Consensus size: 54
74129658 GGAGCAAAAT
* * * *
74129668 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
74129722 GGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTC
* * * *
74129776 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
74129830 GGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
74129864 TCACAATCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 123 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:74129898 original size:27 final size:27
Alignment explanation
Indices: 74129868--74130223 Score: 457
Period size: 27 Copynumber: 13.2 Consensus size: 27
74129858 GTAATTTCAC
*
74129868 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
74129895 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
74129922 AATTGAGGGTAAACCAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
74129949 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
74129976 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
74130003 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
74130030 AA-CTGAGGGTAAAACGATAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
74130057 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
74130084 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
74130111 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
74130138 AATCGAGGGTAAAACGATAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
74130165 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
74130192 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
74130219 AATCG
1 AATCG
74130224 GGAGTACTTT
Statistics
Matches: 281, Mismatches: 44, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 277 0.99
28 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:74131670 original size:14 final size:14
Alignment explanation
Indices: 74131651--74131677 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74131641 TCACATTAGT
74131651 TTCTCTTCTTCCTC
1 TTCTCTTCTTCCTC
74131665 TTCTCTTCTTCCT
1 TTCTCTTCTTCCT
74131678 TATTCTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (14 bp):
TTCTCTTCTTCCTC
Found at i:74137469 original size:11 final size:11
Alignment explanation
Indices: 74137453--74137478 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
74137443 AGTGTGCTAT
74137453 ATGAATCTAGG
1 ATGAATCTAGG
74137464 ATGAATCTAGG
1 ATGAATCTAGG
74137475 ATGA
1 ATGA
74137479 GTATGTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (11 bp):
ATGAATCTAGG
Found at i:74137541 original size:26 final size:26
Alignment explanation
Indices: 74137505--74137561 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
74137495 GTTAATGTGT
* *
74137505 TTATAGGTGTTTGGCTATGCCAAGGA
1 TTATAGGTGTTTAGATATGCCAAGGA
*
74137531 TTATAGGTGTTTAGATATGCTAAGGA
1 TTATAGGTGTTTAGATATGCCAAGGA
74137557 TTATA
1 TTATA
74137562 TTTGATGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.07, G:0.26, T:0.39
Consensus pattern (26 bp):
TTATAGGTGTTTAGATATGCCAAGGA
Found at i:74144548 original size:181 final size:181
Alignment explanation
Indices: 74144244--74144592 Score: 644
Period size: 181 Copynumber: 1.9 Consensus size: 181
74144234 GTCATCTCAA
74144244 TTCAATTCTCGACATTCCATATCATCATATACAAACCGAATCATGAGAAAAATAGAATCCATACC
1 TTCAATTCTCGACATTCCATATCATCATATACAAACCGAATCATGAGAAAAATAGAATCCATACC
* *
74144309 TCAAATAAGCTATCTTGTAACAACTTATATCTATTGAACTCAAATTATGAGAGTACAAATCGTAA
66 TCAAATAAGCTAGCTTGTAACAACTTATATATATTGAACTCAAATTATGAGAGTACAAATCGTAA
* *
74144374 TAGTTACTCATCTACAACTCTTACCTTTCCCTCCTCTTGAGATAGCCCGGT
131 TAGGTACTCATCTACAACTCTTACCTTTCCCTCATCTTGAGATAGCCCGGT
* *
74144425 TTCAATTCTCGACATTCCATATCATCATATGCAAACCGAATCATGAGAAAAATAGAATGCATACC
1 TTCAATTCTCGACATTCCATATCATCATATACAAACCGAATCATGAGAAAAATAGAATCCATACC
74144490 TCAAATAAGCTAGCTTGTAACAACTTATATATATTGAACTCAAATTATGAGAGTACAAATCGTAA
66 TCAAATAAGCTAGCTTGTAACAACTTATATATATTGAACTCAAATTATGAGAGTACAAATCGTAA
74144555 TAGGTACTCATCTACAACTCTTACCTTTCCCTCATCTT
131 TAGGTACTCATCTACAACTCTTACCTTTCCCTCATCTT
74144593 TTGTTGCATT
Statistics
Matches: 162, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
181 162 1.00
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (181 bp):
TTCAATTCTCGACATTCCATATCATCATATACAAACCGAATCATGAGAAAAATAGAATCCATACC
TCAAATAAGCTAGCTTGTAACAACTTATATATATTGAACTCAAATTATGAGAGTACAAATCGTAA
TAGGTACTCATCTACAACTCTTACCTTTCCCTCATCTTGAGATAGCCCGGT
Found at i:74146345 original size:45 final size:45
Alignment explanation
Indices: 74146243--74146364 Score: 129
Period size: 45 Copynumber: 2.7 Consensus size: 45
74146233 ATATGCCTAG
* * *
74146243 AGATGAATAAGACCATAGCTGGAAGATGTTATGGTATCACGCTAA
1 AGATGAATAAGACCATAGCTGAAAGATGTTATGGCATCACGATAA
** * *
74146288 AGACCAATAAGACCATAACTGAAAGATGTTATGGCATCATGATATA
1 AGATGAATAAGACCATAGCTGAAAGATGTTATGGCATCACGATA-A
* * * *
74146334 A-ATGAAGAAGACTATAGCTAAAAGACGTTAT
1 AGATGAATAAGACCATAGCTGAAAGATGTTAT
74146365 AACATCCTTT
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
45 60 0.97
46 2 0.03
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (45 bp):
AGATGAATAAGACCATAGCTGAAAGATGTTATGGCATCACGATAA
Found at i:74146679 original size:27 final size:27
Alignment explanation
Indices: 74146649--74146713 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
74146639 AACAACACAT
*
74146649 TAAACATGGGATAGTCCAT-TAGGACAC
1 TAAACATGGGATAGTCC-TCTAGGACAA
* *
74146676 TAAACTCTGGG-TAGTCCTCTTGGACAA
1 TAAAC-ATGGGATAGTCCTCTAGGACAA
74146703 TAAACATGGGA
1 TAAACATGGGA
74146714 GATTATGAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
26 5 0.16
27 22 0.71
28 4 0.13
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
TAAACATGGGATAGTCCTCTAGGACAA
Found at i:74148600 original size:46 final size:49
Alignment explanation
Indices: 74148497--74148719 Score: 216
Period size: 46 Copynumber: 4.7 Consensus size: 49
74148487 GGTTATTTGT
* * * *
74148497 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATG-A
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTA
* *
74148545 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCAAGATGTA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTA
74148592 -AGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGG-CTACGAGATGT-
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-CGAGATGTA
** * * * **
74148637 --GTTAGTGTAAGACCATGACTAGGATATGGCATTGGCCTCGATTTCG-A
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGAT-GTA
* *
74148684 TAGTCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
74148720 AGTTGATGGA
Statistics
Matches: 147, Mismatches: 19, Indels: 17
0.80 0.10 0.09
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 63 0.43
47 17 0.12
48 13 0.09
49 30 0.20
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTA
Found at i:74149917 original size:24 final size:24
Alignment explanation
Indices: 74149890--74149937 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
74149880 GGAGTTGGAC
74149890 ATCATCGGAGGTAGCATCACACTA
1 ATCATCGGAGGTAGCATCACACTA
74149914 ATCATCGGAGGTAGCATCACACTA
1 ATCATCGGAGGTAGCATCACACTA
74149938 TCAAGTCGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (24 bp):
ATCATCGGAGGTAGCATCACACTA
Found at i:74157196 original size:93 final size:93
Alignment explanation
Indices: 74157032--74157203 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
74157022 GCCCATAAGT
* * *
74157032 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
74157097 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* * *
74157125 GAACTCGGATTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74157190 CAAGTTCGGATGCC
66 CAAGTTCGGATGCC
74157204 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74157199 original size:46 final size:46
Alignment explanation
Indices: 74157024--74157199 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
74157014 TGTAACCCGC
* * * *
74157024 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
74157070 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
74157120 -C-TCA-CGAACTCGGATTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
74157163 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74157200 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:74159617 original size:13 final size:13
Alignment explanation
Indices: 74159599--74159624 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74159589 TTTGAGACCT
74159599 AATAAAAAATAAA
1 AATAAAAAATAAA
74159612 AATAAAAAATAAA
1 AATAAAAAATAAA
74159625 GAGGAGAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AATAAAAAATAAA
Found at i:74161015 original size:45 final size:45
Alignment explanation
Indices: 74160966--74161053 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
74160956 AAGTAGACTG
*
74160966 AAGATTGAAG-ATCTTAT-TTCCCTGAGATAGTAGTGGAGCAGATCA
1 AAGA-TGAAGAATCTTATCTTCCC-GAGATAGTAGGGGAGCAGATCA
** *
74161011 AAGATGGCGAATCTTATCTTCCCGAGGTAGTAGGGGAGCAGAT
1 AAGATGAAGAATCTTATCTTCCCGAGATAGTAGGGGAGCAGAT
74161054 TTTAGCCACC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 3 0.08
45 29 0.78
46 5 0.14
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (45 bp):
AAGATGAAGAATCTTATCTTCCCGAGATAGTAGGGGAGCAGATCA
Found at i:74161095 original size:178 final size:178
Alignment explanation
Indices: 74160796--74161133 Score: 514
Period size: 178 Copynumber: 1.9 Consensus size: 178
74160786 GTGAATTCAC
* * * *
74160796 AGATCTTATCTCCTTGAGATAACAGTAGAGCATATCGAAGATAGCGAATCTTATCTTCTCGAGGT
1 AGATCTTATCTCCCTGAGATAACAGTAGAGCAGATCAAAGATAGCGAATCTTATCTTCCCGAGGT
* * *
74160861 AGCAGGGGAGCAGATTTTAGCCGCCAGCCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGGAGA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAA
* *
74160926 TTGTAGTCTTATCTTCTTGAGGTAGCAAGGAAGTAGACTGAAGATTGA
131 TTGTAGCCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATTGA
* ** * *
74160974 AGATCTTATTTCCCTGAGATAGTAGTGGAGCAGATCAAAGATGGCGAATCTTATCTTCCCGAGGT
1 AGATCTTATCTCCCTGAGATAACAGTAGAGCAGATCAAAGATAGCGAATCTTATCTTCCCGAGGT
* * * *
74161039 AGTAGGGGAGCAGATTTTAGCCACCAGCCTTTTCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAA
74161104 TTGTAGCCTTATCTTCCTGAGGTAGCAAGG
131 TTGTAGCCTTATCTTCCTGAGGTAGCAAGG
74161134 GAGCAAGCCA
Statistics
Matches: 142, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
178 142 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (178 bp):
AGATCTTATCTCCCTGAGATAACAGTAGAGCAGATCAAAGATAGCGAATCTTATCTTCCCGAGGT
AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAAGTAGCAAGAGAGCAGGTTGAAAA
TTGTAGCCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATTGA
Found at i:74161112 original size:44 final size:43
Alignment explanation
Indices: 74161064--74161172 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 43
74161054 TTTAGCCACC
* * ***
74161064 AGCCTTTTCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATTGT
1 AGCCTTATCT-TCTGAGGTAGCAAGAGAGCAAGCCAAAAATTGT
*
74161108 AGCCTTATCTTCCTGAGGTAGCAAGGGAGCAAGCCAAAAATTGT
1 AGCCTTATCTT-CTGAGGTAGCAAGAGAGCAAGCCAAAAATTGT
*
74161152 AGTCTTATCTTTCTGAGGTAG
1 AGCCTTATC-TTCTGAGGTAG
74161173 TAAGGAAGCA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 53 0.95
45 2 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
AGCCTTATCTTCTGAGGTAGCAAGAGAGCAAGCCAAAAATTGT
Found at i:74161183 original size:44 final size:44
Alignment explanation
Indices: 74161100--74161183 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
74161090 GAGCAGGTTG
*
74161100 AAAATTGTAGCCTTATCTTCCTGAGGTAGCAAGGGAGCAAGCCA
1 AAAATTGTAGCCTTATCTTCCTGAGGTAGCAAGGAAGCAAGCCA
* * *
74161144 AAAATTGTAGTCTTATCTTTCTGAGGTAGTAAGGAAGCAA
1 AAAATTGTAGCCTTATCTTCCTGAGGTAGCAAGGAAGCAA
74161184 ACTGTTCTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (44 bp):
AAAATTGTAGCCTTATCTTCCTGAGGTAGCAAGGAAGCAAGCCA
Found at i:74163148 original size:27 final size:27
Alignment explanation
Indices: 74163089--74163148 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
74163079 AATTCTAAAA
* * *
74163089 TTATTGTTTTAAAATTCTCTTTTATAT
1 TTATTGTTTAAAAATTCTCTATAATAT
* *
74163116 TATATTGTTTAAAAATTTTGTATAATAT
1 T-TATTGTTTAAAAATTCTCTATAATAT
74163144 TTATT
1 TTATT
74163149 TTGAATTACC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (27 bp):
TTATTGTTTAAAAATTCTCTATAATAT
Found at i:74163615 original size:11 final size:11
Alignment explanation
Indices: 74163599--74163624 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
74163589 TATTTAATAA
74163599 TTTTCAAATTG
1 TTTTCAAATTG
74163610 TTTTCAAATTG
1 TTTTCAAATTG
74163621 TTTT
1 TTTT
74163625 GTATGTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (11 bp):
TTTTCAAATTG
Found at i:74168205 original size:19 final size:20
Alignment explanation
Indices: 74168161--74168208 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
74168151 CTTAATTAGG
74168161 CTTAATCAAGTTTAACTTAA
1 CTTAATCAAGTTTAACTTAA
*
74168181 CTTAATCAAGTTTAA-TTAT
1 CTTAATCAAGTTTAACTTAA
74168200 CTTAATCAA
1 CTTAATCAA
74168209 ACTATTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.42
Consensus pattern (20 bp):
CTTAATCAAGTTTAACTTAA
Found at i:74170458 original size:39 final size:40
Alignment explanation
Indices: 74170357--74170458 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
74170347 TATTCGAATG
* * *
74170357 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTGACT
74170397 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAA-ATCCCGAAGGCATTTGTGCGAG-TGACT
74170437 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGG
74170459 TACTTGGGTT
Statistics
Matches: 56, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
38 1 0.02
39 14 0.25
40 39 0.70
41 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTGACT
Found at i:74171257 original size:30 final size:30
Alignment explanation
Indices: 74171223--74171283 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
74171213 GGAATTTAAT
74171223 TAAATAATGAATAAATTATGTAATCTAACC
1 TAAATAATGAATAAATTATGTAATCTAACC
74171253 TAAATAATGAATAAATTATGTAATCTAACC
1 TAAATAATGAATAAATTATGTAATCTAACC
74171283 T
1 T
74171284 TGATGAGTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (30 bp):
TAAATAATGAATAAATTATGTAATCTAACC
Found at i:74174424 original size:17 final size:17
Alignment explanation
Indices: 74174402--74174444 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
74174392 TTATTTAATT
74174402 ATATTTATTAAACTC-G
1 ATATTTATTAAACTCAG
* *
74174418 AATATTTAGTAAATTCAG
1 -ATATTTATTAAACTCAG
74174436 ATATTTATT
1 ATATTTATT
74174445 TTATAATCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (17 bp):
ATATTTATTAAACTCAG
Found at i:74175644 original size:23 final size:23
Alignment explanation
Indices: 74175602--74175645 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
74175592 AAAAAATTTA
*
74175602 AAATTATAAAAATATGTTAAATG
1 AAATTATAAAAATATATTAAATG
74175625 AAATTATATAAAAT-TATTAAA
1 AAATTATA-AAAATATATTAAA
74175646 ATAATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (23 bp):
AAATTATAAAAATATATTAAATG
Found at i:74186095 original size:55 final size:55
Alignment explanation
Indices: 74186008--74186113 Score: 151
Period size: 55 Copynumber: 1.9 Consensus size: 55
74185998 TTTAATTTAT
*
74186008 AAGTTAGTATAGGACACGGGTAGGCCACACGGGCGTGTCCCAT-AGCCATGTCCCA
1 AAGTTAGTATAGAACACGGGTAGGCCACACGGGCGTGTCCCATGA-CCATGTCCCA
* * * *
74186063 AAGTTAGTATTGAACACGGGTAGTCCATACGGGCGTGTGCCATGACCATGT
1 AAGTTAGTATAGAACACGGGTAGGCCACACGGGCGTGTCCCATGACCATGT
74186114 TTAAAAGTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
55 44 0.98
56 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (55 bp):
AAGTTAGTATAGAACACGGGTAGGCCACACGGGCGTGTCCCATGACCATGTCCCA
Found at i:74186121 original size:55 final size:55
Alignment explanation
Indices: 74186003--74186121 Score: 141
Period size: 55 Copynumber: 2.2 Consensus size: 55
74185993 GGATGTTTAA
* *
74186003 TTTATAAGTTAGTATAGGACACGGGTAGGCCACACGGGCGTGTCCCATAGCCATG
1 TTTAAAAGTTAGTATAGAACACGGGTAGGCCACACGGGCGTGTCCCATAGCCATG
*** * * * *
74186058 TCCCAAAGTTAGTATTGAACACGGGTAGTCCATACGGGCGTGTGCCAT-GACCATG
1 TTTAAAAGTTAGTATAGAACACGGGTAGGCCACACGGGCGTGTCCCATAG-CCATG
74186113 TTTAAAAGT
1 TTTAAAAGT
74186122 CAGTGTTGCC
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
54 1 0.02
55 50 0.98
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (55 bp):
TTTAAAAGTTAGTATAGAACACGGGTAGGCCACACGGGCGTGTCCCATAGCCATG
Found at i:74192109 original size:153 final size:152
Alignment explanation
Indices: 74191830--74192138 Score: 501
Period size: 153 Copynumber: 2.0 Consensus size: 152
74191820 ATAGAATTTC
74191830 TTCATAAAACTTTAACACATGATTATTCCCATATCCTAGACTTCATAATGATCATAAAATAATTA
1 TTCATAAAACTTTAACACATGATTATTCCCATATCCTAGACTTCATAATGATCATAAAATAATTA
* * * * * * *
74191895 TTTTAATGTCAGATTTGTGGTCCTGAAACCACTATTCTGACTAGGCCCAAATTCGGGATGTTACA
66 TTTTAACGTCAGATTTGTGGCCCCGAAACAACTATTCTAACTAGGCCCAAATTCAGAATGTT-CA
74191960 TTGGGAATTCTTTAATACTACAT
130 TTGGGAATTCTTTAATACTACAT
* * * *
74191983 TTCATGAAACTTTAACACATGCTTATTCCTATATCCTAGACTTCATAATGATCATTAAATAATTA
1 TTCATAAAACTTTAACACATGATTATTCCCATATCCTAGACTTCATAATGATCATAAAATAATTA
*
74192048 TTTTAACGTCAGATTTGTGGCCCCGAAACAACTATTCTAACTAGGCCCTAATTCAGAATGTTCAT
66 TTTTAACGTCAGATTTGTGGCCCCGAAACAACTATTCTAACTAGGCCCAAATTCAGAATGTTCAT
74192113 TGGGAATTCTTTAATACTACAT
131 TGGGAATTCTTTAATACTACAT
74192135 TTCA
1 TTCA
74192139 GAGCAAGTAT
Statistics
Matches: 144, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
152 29 0.20
153 115 0.80
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (152 bp):
TTCATAAAACTTTAACACATGATTATTCCCATATCCTAGACTTCATAATGATCATAAAATAATTA
TTTTAACGTCAGATTTGTGGCCCCGAAACAACTATTCTAACTAGGCCCAAATTCAGAATGTTCAT
TGGGAATTCTTTAATACTACAT
Found at i:74200902 original size:41 final size:42
Alignment explanation
Indices: 74200808--74200967 Score: 191
Period size: 42 Copynumber: 3.8 Consensus size: 42
74200798 AGGGTTACTA
* * * *
74200808 AGACTACGTGTAAGACCATATTTGGGGTATGGCATCAATATG
1 AGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
74200850 AGACTTCGTGTAAGACCATATCTGGGATATGG-ATCGATATG
1 AGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
* **
74200891 AGACTTCGTGTAAGACCATAGT-TGGGCTATTGGCATCGATACA
1 AGACTTCGTGTAAGACCATA-TCTGGGATA-TGGCATCGATATG
* *
74200934 AGA-TTACATATAAGACCATATCTGGGATATGGCA
1 AGACTT-CGTGTAAGACCATATCTGGGATATGGCA
74200968 ATGGTATGGT
Statistics
Matches: 103, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
41 34 0.33
42 41 0.40
43 28 0.27
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
AGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
Found at i:74200960 original size:84 final size:83
Alignment explanation
Indices: 74200808--74200965 Score: 219
Period size: 84 Copynumber: 1.9 Consensus size: 83
74200798 AGGGTTACTA
* * ** * *
74200808 AGACTACGTGTAAGACCATATTTGGGGTATGGCATCAATATGAGACTTCGTGTAAGACCATATCT
1 AGACTACGTGTAAGACCATAGTTGGGCTATGGCATCAATACAAGACTTCATATAAGACCATATCT
74200873 GGGATATGGATCGATATG
66 GGGATATGGATCGATATG
* *
74200891 AGACTTCGTGTAAGACCATAGTTGGGCTATTGGCATCGATACAAGA-TTACATATAAGACCATAT
1 AGACTACGTGTAAGACCATAGTTGGGCTA-TGGCATCAATACAAGACTT-CATATAAGACCATAT
74200955 CTGGGATATGG
64 CTGGGATATGG
74200966 CAATGGTATG
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
83 28 0.43
84 37 0.57
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (83 bp):
AGACTACGTGTAAGACCATAGTTGGGCTATGGCATCAATACAAGACTTCATATAAGACCATATCT
GGGATATGGATCGATATG
Found at i:74205326 original size:17 final size:17
Alignment explanation
Indices: 74205306--74205385 Score: 56
Period size: 17 Copynumber: 4.5 Consensus size: 17
74205296 GAAAGAGTAG
74205306 TAATTTTTAATTTTTTA
1 TAATTTTTAATTTTTTA
*
74205323 TAATATTTAATATTTTTAA
1 TAATTTTTAAT-TTTTT-A
* *
74205342 AAATTTTATATAATTTTTCTG
1 TAA-TTT-T-TAATTTTT-TA
*
74205363 TAATTTTCAA--TTTTA
1 TAATTTTTAATTTTTTA
74205378 TAATTTTT
1 TAATTTTT
74205386 TTTACAACTT
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
15 8 0.16
16 3 0.06
17 10 0.20
18 7 0.14
19 4 0.08
20 5 0.10
21 7 0.14
22 5 0.10
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (17 bp):
TAATTTTTAATTTTTTA
Found at i:74205416 original size:32 final size:32
Alignment explanation
Indices: 74205371--74205454 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 32
74205361 TGTAATTTTC
*
74205371 AATTTTA-TAATTTTTTTTACAACTTTTAATAA
1 AATTTTACT-ATTTTTTTTAAAACTTTTAATAA
* * *
74205403 TATTTTACTA-TTTTTTAAAAACTTTTAGTAA
1 AATTTTACTATTTTTTTTAAAACTTTTAATAA
74205434 AATATTTACTACTTCTTTTTT
1 AAT-TTTACTA-TT-TTTTTT
74205455 GTTTTCTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
31 20 0.49
32 14 0.34
33 1 0.02
34 1 0.02
35 5 0.12
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.57
Consensus pattern (32 bp):
AATTTTACTATTTTTTTTAAAACTTTTAATAA
Found at i:74205426 original size:31 final size:32
Alignment explanation
Indices: 74205382--74205444 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
74205372 ATTTTATAAT
* * *
74205382 TTTTTTTACAACTTTTAATAATAT-TTTACTA
1 TTTTTTAAAAACTTTTAATAAAATATTTACTA
*
74205413 TTTTTTAAAAACTTTTAGTAAAATATTTACTA
1 TTTTTTAAAAACTTTTAATAAAATATTTACTA
74205445 CTTCTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (32 bp):
TTTTTTAAAAACTTTTAATAAAATATTTACTA
Found at i:74207716 original size:17 final size:19
Alignment explanation
Indices: 74207694--74207772 Score: 94
Period size: 19 Copynumber: 4.4 Consensus size: 19
74207684 ACGGAAATAT
74207694 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
74207711 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
74207730 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
* *
74207747 AATCTTAGATATGATATGT
1 AATCTTACATATGATATGC
74207766 AATCTTA
1 AATCTTA
74207773 GAAGATATGA
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
17 23 0.41
18 1 0.02
19 32 0.57
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:74207778 original size:22 final size:23
Alignment explanation
Indices: 74207753--74207797 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
74207743 ATACAATCTT
74207753 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
74207775 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
74207798 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:74207781 original size:17 final size:19
Alignment explanation
Indices: 74207702--74207774 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
74207692 ATAATCTTCA
74207702 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74207721 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74207740 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
74207757 ATGATATGTAATCTTAGA
1 ATGATATGCAATCTTAGA
74207775 AGATATGATT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 17 0.33
19 34 0.67
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:74207807 original size:22 final size:23
Alignment explanation
Indices: 74207763--74207807 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
74207753 AGATATGATA
*
74207763 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
74207786 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
74207808 GTAGATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:74213972 original size:7 final size:7
Alignment explanation
Indices: 74213951--74214000 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
74213941 AAATGGGGGG
74213951 AAAAGAA
1 AAAAGAA
*
74213958 AATA-AA
1 AAAAGAA
74213964 AAAAGAA
1 AAAAGAA
74213971 AAAAG-A
1 AAAAGAA
*
74213977 AAAATAA
1 AAAAGAA
*
74213984 AAAA-TA
1 AAAAGAA
74213990 AAAAGAA
1 AAAAGAA
74213997 AAAA
1 AAAA
74214001 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
6 15 0.43
7 20 0.57
ACGTcount: A:0.86, C:0.00, G:0.08, T:0.06
Consensus pattern (7 bp):
AAAAGAA
Found at i:74213992 original size:20 final size:20
Alignment explanation
Indices: 74213951--74213999 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
74213941 AAATGGGGGG
74213951 AAAAG-AAAATAAAAAAAGAA
1 AAAAGAAAAATAAAAAAAG-A
*
74213971 AAAAGAAAAAT-AAAAAATA
1 AAAAGAAAAATAAAAAAAGA
74213990 AAAAGAAAAA
1 AAAAGAAAAA
74214000 ATGGAGAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 11 0.41
20 11 0.41
21 5 0.19
ACGTcount: A:0.86, C:0.00, G:0.08, T:0.06
Consensus pattern (20 bp):
AAAAGAAAAATAAAAAAAGA
Found at i:74214001 original size:13 final size:13
Alignment explanation
Indices: 74213951--74214001 Score: 68
Period size: 13 Copynumber: 3.9 Consensus size: 13
74213941 AAATGGGGGG
74213951 AAAAGAAAATAA-A
1 AAAAGAAAA-AATA
*
74213964 AAAAGAAAAAAGA
1 AAAAGAAAAAATA
*
74213977 AAAATAAAAAATA
1 AAAAGAAAAAATA
74213990 AAAAGAAAAAAT
1 AAAAGAAAAAAT
74214002 GGAGAGGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
12 2 0.06
13 32 0.94
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (13 bp):
AAAAGAAAAAATA
Found at i:74215054 original size:44 final size:44
Alignment explanation
Indices: 74215003--74215132 Score: 179
Period size: 44 Copynumber: 2.9 Consensus size: 44
74214993 GATCCAAGAT
* *
74215003 GATTTGGCATATTTGTATTGGCAGAGAGCAGATCGAAGACAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAACA
* * ** *
74215047 GATTTGGCGTCTCTGTATTGGCAGAGAACAGATCGAAGATGACT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAACA
*
74215091 GATTTGGCATCTCTGTGTTCGGCAGAGAGCAGATCGAAGACA
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAGACA
74215133 TAACTGATTT
Statistics
Matches: 73, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
44 54 0.74
45 19 0.26
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAACA
Found at i:74215317 original size:175 final size:175
Alignment explanation
Indices: 74215090--74215492 Score: 713
Period size: 175 Copynumber: 2.3 Consensus size: 175
74215080 CGAAGATGAC
*
74215090 TGATTTGGCATCTCTGTGTTCGGCAGAGAGCAGATCGAAGACATAACTGATTTGGCTTTCATGTG
1 TGATTTGGCATCTCTGTATTCGGCAGAGAGCAGATCGAAGACATAACTGATTTGGCTTTCATGTG
*
74215155 TTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACA
66 TTTACGTTGAAGCAAATCTAAGAAGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACA
74215220 TAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
131 TAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
*
74215265 TGATTTGGCATCTCTGTATTCGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTG
1 TGATTTGGCATCTCTGTATTCGGCAGAGAGCAGATCGAAGACATAACTGATTTGGCTTTCATGTG
74215330 TTTACGTTGAAGCAAATCTAAGAAGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACA
66 TTTACGTTGAAGCAAATCTAAGAAGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACA
*
74215395 TAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
131 TAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
* * * *
74215440 TGATTTGGCGTCTCTGTATT-GTCAGAGAGTAGATCGAAG--ATAACAGATTTGGC
1 TGATTTGGCATCTCTGTATTCGGCAGAGAGCAGATCGAAGACATAACTGATTTGGC
74215493 ATCTCCATAT
Statistics
Matches: 219, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
172 12 0.05
174 17 0.08
175 190 0.87
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (175 bp):
TGATTTGGCATCTCTGTATTCGGCAGAGAGCAGATCGAAGACATAACTGATTTGGCTTTCATGTG
TTTACGTTGAAGCAAATCTAAGAAGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACA
TAGCTAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGA
Found at i:74215333 original size:88 final size:87
Alignment explanation
Indices: 74214986--74215479 Score: 656
Period size: 87 Copynumber: 5.6 Consensus size: 87
74214976 GTATTTATAC
* * * * *
74214986 TGAAGCAGATCCAAGATGATTTGGCATATTTGTATTGGCAGAGAGCAGATCGAAGACA-A-CAGA
1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGA
* * **
74215049 TTTGGCGTCTC-TGTATTGGCAG-
66 TTTGGC-TTTCATGTGTTTAC-GT
* * * *
74215071 AGAA-CAGATCGAAGATGACTGATTTGGCATCTCTGTGTTCGGCAGAGAGCAGATCGAAGACATA
1 TGAAGCAAATC-TA-A-GA-TGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAGACATA
*
74215135 ACTGATTTGGCTTTCATGTGTTTACGT
61 GCTGATTTGGCTTTCATGTGTTTACGT
* * *
74215162 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTAA
1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGA
*
74215227 TTTGGCTTTCACGTGTTTACGT
66 TTTGGCTTTCATGTGTTTACGT
74215249 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTCGGCAGAGAGCAGATCGAAGACATAGCTG
1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAGACATAGCTG
74215314 ATTTGGCTTTCATGTGTTTACGT
65 ATTTGGCTTTCATGTGTTTACGT
* * *
74215337 TGAAGCAAATCTAAGAAGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGA
1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGA
*
74215402 TTTGGCTTTCACGTGTTTACGT
66 TTTGGCTTTCATGTGTTTACGT
* * *
74215424 TGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGA
1 TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
74215480 TAACAGATTT
Statistics
Matches: 367, Mismatches: 31, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
84 6 0.02
85 4 0.01
86 1 0.00
87 185 0.50
88 117 0.32
89 24 0.07
90 6 0.02
91 19 0.05
92 5 0.01
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (87 bp):
TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGA
TTTGGCTTTCATGTGTTTACGT
Found at i:74216007 original size:78 final size:78
Alignment explanation
Indices: 74215904--74216233 Score: 464
Period size: 78 Copynumber: 4.1 Consensus size: 78
74215894 ATTCGACAGA
*
74215904 GAGCAGATAGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
74215969 TGTATTAGACGGG
66 TGTATTAGACGGG
*
74215982 GAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
74216047 TGTATTAGACGGG
66 TGTATTAGACGGG
* ** *
74216060 GAGCAGATCAAAGACATAATAGAT-TGGACCTTTATTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCT
*
74216124 CTGTATTAGACAGG
65 CTGTATTAGACGGG
74216138 GAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGTTACATCGAAGCAGATCCAAGATGACA
1 GAGCAGATCGAAGACATAGCAGATCTGACCTTCA-----T---T-GAAGCAGATCCAAGAT----
74216203 GATTTGGCATCTCTGTATTAGACGGG
53 GATTTGGCATCTCTGTATTAGACGGG
74216229 GAGCA
1 GAGCA
74216234 AATCAGAGAT
Statistics
Matches: 224, Mismatches: 13, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
77 1 0.00
78 174 0.78
79 1 0.00
83 1 0.00
86 1 0.00
87 16 0.07
91 30 0.13
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (78 bp):
GAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTC
TGTATTAGACGGG
Found at i:74216264 original size:45 final size:45
Alignment explanation
Indices: 74216112--74216384 Score: 284
Period size: 45 Copynumber: 6.1 Consensus size: 45
74216102 GATCCAAGAT
* * *
74216112 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC-AA-AGATAACA
* * * * * * * *
74216159 GATCTGACCT-TCATGTGTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGTATTAGA-CGGGGAGCAGATCAAAGATAACA
* *
74216203 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* * ** *
74216248 GATTTGGCATCTCTGTATTAGACGAGGAGTAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
*
74216292 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* * *
74216337 GATTTGGCGTCTCTGTATTAGACGGGGAACAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
74216382 GAT
1 GAT
74216385 ATCGCCTTCC
Statistics
Matches: 183, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
43 1 0.01
44 57 0.31
45 99 0.54
46 11 0.06
47 14 0.08
48 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
Found at i:74216750 original size:17 final size:19
Alignment explanation
Indices: 74216728--74216823 Score: 114
Period size: 19 Copynumber: 5.4 Consensus size: 19
74216718 ATGGAAATAT
74216728 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
74216745 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
74216764 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
74216781 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
*
74216799 AATCTTAGATAT-ATATGC
1 AATCTTACATATGATATGC
74216817 AATCTTA
1 AATCTTA
74216824 GAAGATATGA
Statistics
Matches: 73, Mismatches: 1, Indels: 9
0.88 0.01 0.11
Matches are distributed among these distances:
17 24 0.33
18 24 0.33
19 25 0.34
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:74216803 original size:18 final size:19
Alignment explanation
Indices: 74216736--74216825 Score: 152
Period size: 18 Copynumber: 4.9 Consensus size: 19
74216726 ATAATCTTCA
74216736 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74216755 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74216774 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74216791 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
74216809 AT-ATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
74216826 AGATATGATT
Statistics
Matches: 68, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
17 18 0.26
18 25 0.37
19 25 0.37
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:74221789 original size:21 final size:22
Alignment explanation
Indices: 74221765--74221846 Score: 71
Period size: 21 Copynumber: 3.7 Consensus size: 22
74221755 TTAAGGTCCG
74221765 CATATAATTCCTATAG-GTTCA
1 CATATAATTCCTATAGTGTTCA
*
74221786 CATATAACTT-CTA-CGTGTTCA
1 CATATAA-TTCCTATAGTGTTCA
* *
74221807 CATTACAATTCCTACAGTGTTCA
1 CA-TATAATTCCTATAGTGTTCA
* *
74221830 CATGTTATTTCCTATAG
1 CAT-ATAATTCCTATAG
74221847 GTTTGCATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
20 1 0.02
21 19 0.40
22 10 0.21
23 18 0.38
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (22 bp):
CATATAATTCCTATAGTGTTCA
Found at i:74221830 original size:23 final size:23
Alignment explanation
Indices: 74221765--74221832 Score: 74
Period size: 21 Copynumber: 3.1 Consensus size: 23
74221755 TTAAGGTCCG
*
74221765 CATAT-AATTCCTATAG-GTTCA
1 CATATAAATTCCTACAGTGTTCA
*
74221786 CATATAACTT-CTAC-GTGTTCA
1 CATATAAATTCCTACAGTGTTCA
74221807 CAT-TACAATTCCTACAGTGTTCA
1 CATATA-AATTCCTACAGTGTTCA
74221830 CAT
1 CAT
74221833 GTTATTTCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 3 0.08
21 19 0.49
22 7 0.18
23 10 0.26
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.37
Consensus pattern (23 bp):
CATATAAATTCCTACAGTGTTCA
Found at i:74224846 original size:12 final size:12
Alignment explanation
Indices: 74224829--74224853 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74224819 ATATAAACTT
74224829 ATAAAAATTATA
1 ATAAAAATTATA
74224841 ATAAAAATTATA
1 ATAAAAATTATA
74224853 A
1 A
74224854 AAACTTGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAAAAATTATA
Found at i:74225368 original size:26 final size:27
Alignment explanation
Indices: 74225336--74225392 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 27
74225326 TAAAACATGT
74225336 TTTATTA-ATTT-TATTATTTTTAATAA
1 TTTATTAGATTTATATTATTTTT-ATAA
74225362 TTTATTAGATTTAATATTATTTTTATAA
1 TTTATTAGATTT-ATATTATTTTTATAA
74225390 TTT
1 TTT
74225393 TTTTATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.25
27 4 0.14
28 7 0.25
29 10 0.36
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTATTAGATTTATATTATTTTTATAA
Found at i:74225392 original size:19 final size:19
Alignment explanation
Indices: 74225370--74225433 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
74225360 AATTTATTAG
*
74225370 ATTTAATATTATTTTTATA
1 ATTTTATATTATTTTTATA
* *
74225389 ATTTTTTTATAATTTTTAATA
1 A-TTTTATATTATTTTT-ATA
*
74225410 ATATTTATATT-TTTTGATA
1 AT-TTTATATTATTTTTATA
74225429 ATTTT
1 ATTTT
74225434 TCCTATTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
18 3 0.08
19 6 0.17
20 17 0.47
21 10 0.28
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
ATTTTATATTATTTTTATA
Found at i:74225394 original size:9 final size:9
Alignment explanation
Indices: 74225335--74225434 Score: 60
Period size: 9 Copynumber: 10.4 Consensus size: 9
74225325 TTAAAACATG
74225335 TTTTATTAA-
1 TTTTA-TAAT
*
74225344 TTTTATTAT
1 TTTTATAAT
74225353 TTTTAATAAT
1 TTTT-ATAAT
*
74225363 TTATTA-GAT
1 TT-TTATAAT
* *
74225372 TTAATATTAT
1 TT-TTATAAT
74225382 TTTTATAATTT
1 TTTTATAA--T
74225393 TTTTATAAT
1 TTTTATAAT
74225402 TTTTAATAAT
1 TTTT-ATAAT
* *
74225412 ATTTATATT
1 TTTTATAAT
74225421 TTTTGATAAT
1 TTTT-ATAAT
74225431 TTTT
1 TTTT
74225435 CCTATTTTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 15
0.73 0.11 0.15
Matches are distributed among these distances:
8 2 0.03
9 32 0.44
10 27 0.38
11 11 0.15
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:74225394 original size:10 final size:10
Alignment explanation
Indices: 74225381--74225434 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
74225371 TTTAATATTA
74225381 TTTTTATAATT
1 TTTTTATAA-T
74225392 TTTTTATAAT
1 TTTTTATAAT
*
74225402 TTTTAATAA-
1 TTTTTATAAT
*
74225411 TATTTAT-AT
1 TTTTTATAAT
74225420 TTTTTGATAAT
1 TTTTT-ATAAT
74225431 TTTT
1 TTTT
74225435 CCTATTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
8 1 0.03
9 9 0.25
10 11 0.31
11 15 0.42
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:74228519 original size:17 final size:19
Alignment explanation
Indices: 74228498--74228542 Score: 67
Period size: 17 Copynumber: 2.5 Consensus size: 19
74228488 ATTCGCATTC
*
74228498 AGTTCGTATT-CATATAAG
1 AGTTCGCATTGCATATAAG
74228516 -GTTCGCATTGCATATAAG
1 AGTTCGCATTGCATATAAG
74228534 AGTTCGCAT
1 AGTTCGCAT
74228543 ACCTATGTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 8 0.33
18 8 0.33
19 8 0.33
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (19 bp):
AGTTCGCATTGCATATAAG
Found at i:74229051 original size:37 final size:37
Alignment explanation
Indices: 74228960--74229035 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
74228950 TCCTTCGGTC
*
74228960 TCACTGGTAACTTCCTTTCCTTTCCATCTCTACGCTT
1 TCACTGGTAACTTCCTTTCATTTCCATCTCTACGCTT
74228997 TCACTGGTAACTTCCTTTCATTTCCATCTCTACGCTT
1 TCACTGGTAACTTCCTTTCATTTCCATCTCTACGCTT
74229034 TC
1 TC
74229036 TTTTTTTCTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.14, C:0.34, G:0.08, T:0.43
Consensus pattern (37 bp):
TCACTGGTAACTTCCTTTCATTTCCATCTCTACGCTT
Found at i:74229768 original size:91 final size:91
Alignment explanation
Indices: 74229610--74229776 Score: 275
Period size: 91 Copynumber: 1.8 Consensus size: 91
74229600 GGCTGCAGGA
* *
74229610 AACTAGTGGAATGAGTATTTAGGGTCCAAGTTTCACGATAAGAGCTTTGCTTGTGAGTTTTTCTC
1 AACTAGTGGAATGAGTATTTAGGATCCAAGTTTAACGATAAGAGCTTTGCTTGTGAGTTTTTCTC
74229675 TAGTAACTAAACCCTAAACCCTAATG
66 TAGTAACTAAACCCTAAACCCTAATG
*
74229701 AACTAGTGGAATGAGTATTTATGATCCAAGTTTGAAC-ATAAGAGCTTTGCTTGTGAGTTGTTT-
1 AACTAGTGGAATGAGTATTTAGGATCCAAGTTT-AACGATAAGAGCTTTGCTTGTGAGTT-TTTC
74229764 TCTAGTAACTAAA
64 TCTAGTAACTAAA
74229777 ACCTTTCAAG
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
91 66 0.93
92 5 0.07
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (91 bp):
AACTAGTGGAATGAGTATTTAGGATCCAAGTTTAACGATAAGAGCTTTGCTTGTGAGTTTTTCTC
TAGTAACTAAACCCTAAACCCTAATG
Found at i:74230936 original size:31 final size:31
Alignment explanation
Indices: 74230895--74230958 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
74230885 CCTTTTCATA
*
74230895 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
74230926 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
74230957 TT
1 TT
74230959 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:74231197 original size:49 final size:47
Alignment explanation
Indices: 74231144--74231289 Score: 177
Period size: 49 Copynumber: 3.0 Consensus size: 47
74231134 TGCTTTATCA
* *
74231144 TATAACTGGAGGCCT-AGCCTCTTTTAGTAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTA-TAACTGGGGCATAAGCCCTTTT
*
74231193 TATAACTGGGGCATAAGCCCTTTATTATAACTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCC-TT-TTATAACTGGGGCATAAGCCCTT-TT
* * *
74231243 CATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTT
74231290 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
47 1 0.01
48 27 0.31
49 36 0.42
50 22 0.26
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTT
Found at i:74231198 original size:24 final size:24
Alignment explanation
Indices: 74231144--74231289 Score: 172
Period size: 25 Copynumber: 6.0 Consensus size: 24
74231134 TGCTTTATCA
*
74231144 TATAACTGGAGGCCT-AG-CCTCTTT
1 TATAACTGG-GGCATAAGCCCT-TTT
*
74231168 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCCTTTT
74231193 TATAACTGGGGCATAAGCCCTTTAT
1 TATAACTGGGGCATAAGCCCTTT-T
*
74231218 TATAACTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCCTT-TT
* *
74231243 CATAACTAGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTT
*
74231266 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
74231290 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
23 19 0.18
24 29 0.27
25 56 0.52
26 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
TATAACTGGGGCATAAGCCCTTTT
Found at i:74231366 original size:20 final size:20
Alignment explanation
Indices: 74231343--74231445 Score: 197
Period size: 20 Copynumber: 5.2 Consensus size: 20
74231333 GAACATCTCG
74231343 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
74231363 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
74231383 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
74231403 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
74231423 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
74231443 TGT
1 TGT
74231446 TTATCAAAAT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 81 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:74231524 original size:25 final size:25
Alignment explanation
Indices: 74231482--74231529 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74231472 AAGTATAAAC
* * *
74231482 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74231507 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74231530 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74232722 original size:25 final size:25
Alignment explanation
Indices: 74232694--74232743 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
74232684 TATTCATCAT
74232694 TTTACCATACAGGGG-TATTACGGTC
1 TTTACCATACAGGGGCT-TTACGGTC
*
74232719 TTTACCCTACAGGGGCTTTACGGTC
1 TTTACCATACAGGGGCTTTACGGTC
74232744 ACTTTACCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (25 bp):
TTTACCATACAGGGGCTTTACGGTC
Found at i:74232842 original size:27 final size:27
Alignment explanation
Indices: 74232819--74232954 Score: 121
Period size: 27 Copynumber: 5.0 Consensus size: 27
74232809 AATGGTATTT
* * *
74232819 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCAAGGGTAAAA
* *
74232846 TAGTAATCCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTATAAATCAAGGGTAAAA
* *
74232873 TAGTAATTCTATAAATCGACGGTAAAA
1 TAGTAATTCTATAAATCAAGGGTAAAA
* * *
74232900 -CGATAATTCTGTAAATCGAGGGTAAAA
1 TAG-TAATTCTATAAATCAAGGGTAAAA
** * * *
74232927 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 TAGTAATTCTATAAATCAAGGGTAAAA
74232954 T
1 T
74232955 GGGGGTAAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 92 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTATAAATCAAGGGTAAAA
Found at i:74232878 original size:54 final size:55
Alignment explanation
Indices: 74232819--74232954 Score: 177
Period size: 54 Copynumber: 2.5 Consensus size: 55
74232809 AATGGTATTT
*
74232819 TAGTAATTTTGTAAATCGAGGGTAAAATAG-TAATCCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAATAGATAATCCTGTAAATCAAGGGTAAAA
* * * * *
74232873 TAGTAATTCTATAAATCGACGGTAAAA-CGATAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAATAGATAATCCTGTAAATCAAGGGTAAAA
** *
74232927 CGGTAATTCTGTAAGTCGAGGGTAAAAT
1 TAGTAATTCTGTAAATCGAGGGTAAAAT
74232955 GGGGGTAAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 68 0.99
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (55 bp):
TAGTAATTCTGTAAATCGAGGGTAAAATAGATAATCCTGTAAATCAAGGGTAAAA
Found at i:74232961 original size:38 final size:38
Alignment explanation
Indices: 74232919--74232994 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
74232909 TGTAAATCGA
* *
74232919 GGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGG
1 GGGTAAAACGGTAATTATGTAAATCGAGGGTAAAATGG
* *
74232957 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGG
1 GGGTAAAACGGTAATTATGTAAATCGAGGGTAAAATGG
74232995 TAATTTTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.36, C:0.05, G:0.34, T:0.25
Consensus pattern (38 bp):
GGGTAAAACGGTAATTATGTAAATCGAGGGTAAAATGG
Found at i:74233022 original size:27 final size:27
Alignment explanation
Indices: 74232951--74233029 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 27
74232941 GTCGAGGGTA
* *
74232951 AAAT-GGGGGTAAAATGGTAATTATGT
1 AAATCGGGGGTAAAATGGTAATTTTAT
74232977 AAATCGGGGGTAAAATGGTAATTTTAT
1 AAATCGGGGGTAAAATGGTAATTTTAT
* ***
74233004 AAATCGGTGGTACTTTGGTAATTTTA
1 AAATCGGGGGTAAAATGGTAATTTTA
74233030 CAAGTCGAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 4 0.09
27 42 0.91
ACGTcount: A:0.34, C:0.04, G:0.27, T:0.35
Consensus pattern (27 bp):
AAATCGGGGGTAAAATGGTAATTTTAT
Found at i:74233042 original size:27 final size:27
Alignment explanation
Indices: 74232994--74233110 Score: 121
Period size: 27 Copynumber: 4.3 Consensus size: 27
74232984 GGGTAAAATG
* ** *
74232994 GTAATTTTATAAATCGGTGGTACTTT-G
1 GTAATTTTACAAATCGAAGGTA-TTTCA
*
74233021 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
74233048 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
74233075 GTATTTTTACAAA-CTAAGCGTATTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
74233102 GTAATTTTA
1 GTAATTTTA
74233111 GTAAACTAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 70 0.92
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:74233124 original size:27 final size:27
Alignment explanation
Indices: 74233021--74233125 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
74233011 TGGTACTTTG
* *
74233021 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
74233048 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
74233075 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
74233102 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
74233126 CTAAACAGGG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.84
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:74236409 original size:15 final size:15
Alignment explanation
Indices: 74236379--74236407 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
74236369 ACTATTAGTA
74236379 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
74236394 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
74236408 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:74238082 original size:46 final size:46
Alignment explanation
Indices: 74237984--74238152 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
74237974 ATTGCGAGCT
* * *
74237984 AGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGACATC-GCCTTGAGATGA-AGCC
*
74238032 AGTGTAAGA-CATGTCTGAGACATG-CATCGACCTTGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCG-CCTTGAGATG-AAGCC
* * *
74238078 AGTGTAAGA-TATGTCTGGGACATG-CATCGGCTACGAGATG-AGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGCCT-TGAGATGAAGCC
*
74238122 AATGTAAGACCATGTCTGGGACATGACATCG
1 AGTGTAAGACCATGTCTGGGACATGACATCG
74238153 GTATCCTACC
Statistics
Matches: 106, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
44 12 0.11
45 17 0.16
46 53 0.50
47 15 0.14
48 9 0.08
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGACATCGCCTTGAGATGAAGCC
Found at i:74242086 original size:16 final size:16
Alignment explanation
Indices: 74242065--74242118 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
74242055 TGAATTATTG
*
74242065 ATTACAGCTCTATTCC
1 ATTACAGTTCTATTCC
* *
74242081 ATTACAATTCTATTCT
1 ATTACAGTTCTATTCC
*
74242097 ACTACAGTTCTATTCC
1 ATTACAGTTCTATTCC
74242113 ATTACA
1 ATTACA
74242119 ACAAACCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.41
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:74248571 original size:114 final size:113
Alignment explanation
Indices: 74248366--74248571 Score: 259
Period size: 114 Copynumber: 1.8 Consensus size: 113
74248356 TTAAAAGATA
* * * *
74248366 ATTTTTTGTAATGTTTTTTAGATTTAAATTTGTATTAAATGTATGGTTAGTTTATTTTATTAATG
1 ATTTTTTGTAATGTTTTTTAGATTTAAATTTGTATTAAAGGTATGATTAATTTATTTTATTAATA
* **
74248431 TTATTGTTGTATCTTATATCCGTTTTTTTCGTTTTCAAGGGAAATGAT
66 TTATTGTGGTATCTTATATCAATTTTTTTCGTTTTCAAGGGAAATGAT
** ** * * *
74248479 ATTTTTTGTTGTGTTTTTTTATTTTTATATTTGTATTGAAGGTATGATTAATTTGTTTTATTAAT
1 ATTTTTTGTAATG-TTTTTTAGATTTAAATTTGTATTAAAGGTATGATTAATTTATTTTATTAAT
* *
74248544 ATTTTTGTGGTATCTTATATTAATTTTT
65 ATTATTGTGGTATCTTATATCAATTTTT
74248572 CGTATTTACT
Statistics
Matches: 76, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
113 11 0.14
114 65 0.86
ACGTcount: A:0.23, C:0.03, G:0.14, T:0.60
Consensus pattern (113 bp):
ATTTTTTGTAATGTTTTTTAGATTTAAATTTGTATTAAAGGTATGATTAATTTATTTTATTAATA
TTATTGTGGTATCTTATATCAATTTTTTTCGTTTTCAAGGGAAATGAT
Found at i:74255412 original size:28 final size:29
Alignment explanation
Indices: 74255381--74255438 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
74255371 ATCTAAACAA
74255381 TTAAAAAAA-ATATTTGAAATATTTTTAT
1 TTAAAAAAAGATATTTGAAATATTTTTAT
*
74255409 TTAAAAAAAGGTATTTGAAATATTTTTAT
1 TTAAAAAAAGATATTTGAAATATTTTTAT
74255438 T
1 T
74255439 CTTACATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (29 bp):
TTAAAAAAAGATATTTGAAATATTTTTAT
Found at i:74256114 original size:30 final size:26
Alignment explanation
Indices: 74256056--74256114 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 26
74256046 ATTATGACTA
* *
74256056 AATTTTTTAAAATTATAAGTTGGTAT
1 AATTTTTTAAAATTATAAATTGATAT
74256082 AATTTTTTAAAATTAAAACTAAATTGATAT
1 AATTTTTTAAAATT---A-TAAATTGATAT
74256112 AAT
1 AAT
74256115 ATATAAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 14 0.52
29 1 0.04
30 12 0.44
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (26 bp):
AATTTTTTAAAATTATAAATTGATAT
Found at i:74256521 original size:6 final size:6
Alignment explanation
Indices: 74256510--74256537 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
74256500 AACCATTTTT
74256510 ATTAAA ATTAAA ATTAAA ATTAAA ATTA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTA
74256538 CATCTTGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
ATTAAA
Found at i:74258743 original size:6 final size:6
Alignment explanation
Indices: 74258732--74258845 Score: 183
Period size: 6 Copynumber: 18.8 Consensus size: 6
74258722 AGTCCTTTAT
74258732 AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC
1 AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC
* * *
74258780 AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC AAATAC AAATAT
1 AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC
*
74258828 AGATAC AAATAAC AGATA
1 AGATAC AGAT-AC AGATA
74258846 AACAGAACAA
Statistics
Matches: 101, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
6 96 0.95
7 5 0.05
ACGTcount: A:0.54, C:0.15, G:0.14, T:0.18
Consensus pattern (6 bp):
AGATAC
Found at i:74265706 original size:16 final size:16
Alignment explanation
Indices: 74265685--74265720 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
74265675 GGTGTAGGTT
74265685 TTAACACTAAACTAAA
1 TTAACACTAAACTAAA
*
74265701 TTAACACTAAATTAAA
1 TTAACACTAAACTAAA
74265717 TTAA
1 TTAA
74265721 GTCTTTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.31
Consensus pattern (16 bp):
TTAACACTAAACTAAA
Found at i:74269717 original size:30 final size:30
Alignment explanation
Indices: 74269683--74269744 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
74269673 TCCTTAACTC
74269683 AAACTTTTAAAAAATTAAAATTTTGCCCCT
1 AAACTTTTAAAAAATTAAAATTTTGCCCCT
* * * * *
74269713 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTTAAAAAATTAAAATTTTGCCCCT
74269743 AA
1 AA
74269745 GCTCGGGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.37, C:0.21, G:0.03, T:0.39
Consensus pattern (30 bp):
AAACTTTTAAAAAATTAAAATTTTGCCCCT
Found at i:74271732 original size:19 final size:15
Alignment explanation
Indices: 74271679--74271721 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
74271669 AAGTGAAAGG
* *
74271679 TTAATTAAATATTAA
1 TTAAGTAAATTTTAA
74271694 TTAAGTAAATTTTAA
1 TTAAGTAAATTTTAA
74271709 TTAAGTAAATTTT
1 TTAAGTAAATTTT
74271722 GCTTAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (15 bp):
TTAAGTAAATTTTAA
Found at i:74271865 original size:22 final size:22
Alignment explanation
Indices: 74271837--74271894 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
74271827 AGGTGACATG
74271837 TGTGTGGTAAAAATTAATTACA
1 TGTGTGGTAAAAATTAATTACA
74271859 TGTGTGGTAAAAATTAATTACA
1 TGTGTGGTAAAAATTAATTACA
* *
74271881 TGTGTAGTATAAAT
1 TGTGTGGTAAAAAT
74271895 ATATGTTTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.40, C:0.03, G:0.19, T:0.38
Consensus pattern (22 bp):
TGTGTGGTAAAAATTAATTACA
Found at i:74271932 original size:17 final size:17
Alignment explanation
Indices: 74271907--74271962 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 17
74271897 ATGTTTACTT
*
74271907 ATATTATAAGTAAATAAA
1 ATATAATAA-TAAATAAA
74271925 A-ATAATAATAATTACTAAA
1 ATATAATAATAA--A-TAAA
74271944 ATATAATAATATAATAAA
1 ATATAATAATA-AATAAA
74271962 A
1 A
74271963 GAATAAAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
16 3 0.09
17 6 0.19
18 7 0.22
19 6 0.19
20 9 0.28
21 1 0.03
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (17 bp):
ATATAATAATAAATAAA
Found at i:74276790 original size:70 final size:70
Alignment explanation
Indices: 74276624--74276792 Score: 196
Period size: 70 Copynumber: 2.4 Consensus size: 70
74276614 TAAACCAATA
* * ** * * *
74276624 AGCCTTTAGATTCCAGCTGGGAGTGTAAACTCGCGCTAACTGTTTTCGCGGCTGTGGTATTGAAC
1 AGCCTTAAGATTCCAGCTGGGAGCGTAGGCTCACGCTAACTATTTTCGAGGCTGTGGTATTGAAC
*
74276689 TTGTG
66 CTGTG
* * * * *
74276694 AGCCCTAAGATTCTAGCTGAGG-GCGTAGGCTCATGCTAACTATTTTGGAGGTTGTGGTATTGAA
1 AGCCTTAAGATTCCAGCTG-GGAGCGTAGGCTCACGCTAACTATTTTCGAGGCTGTGGTATTGAA
74276758 CCTGTG
65 CCTGTG
*
74276764 AGCCTTAAGATTCCAGTTGGGAGCGTAGG
1 AGCCTTAAGATTCCAGCTGGGAGCGTAGG
74276793 TGATAAGACG
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
69 2 0.02
70 77 0.95
71 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (70 bp):
AGCCTTAAGATTCCAGCTGGGAGCGTAGGCTCACGCTAACTATTTTCGAGGCTGTGGTATTGAAC
CTGTG
Found at i:74286643 original size:140 final size:140
Alignment explanation
Indices: 74286386--74287045 Score: 556
Period size: 140 Copynumber: 4.7 Consensus size: 140
74286376 TAGGCTTGCC
*** * * *
74286386 CTAACTGTTTTGGAGGCTGCAGTATTGAACCTACGAGCCTTAAGATTCTAGCTGAGAGCGTAAGC
1 CTAACTGTTTTGGAGGCTATGGTATTGAACCTACGAGCCTTAAGATTCTAGTTGGGAGCGTAGGC
* * * * * * *
74286451 TCGCGTTAACTATTTTGGAGGCTGCGTTATTGAACCTGCGAGA-CTTAGGATTCAAACTGGGAGC
66 TCACGCTAACTATTTTGGAGGTTGCGGTATTGAACCTGC-AAACCTTAAGATTCAAATTGGGAGC
*
74286515 GTAAGCTTGCG
130 GTAAGCTCGCG
* ** * **
74286526 CTAATTGTTTTAAAGGCTGTGGTATTGAACCTACGAGCCAAAAGATTCTAGTTGGGAGCGTAGGC
1 CTAACTGTTTTGGAGGCTATGGTATTGAACCTACGAGCCTTAAGATTCTAGTTGGGAGCGTAGGC
* * * * * * *
74286591 TCACGCTAACTCTTTTGGAGGATGCGGTACTGAACTTGCAAACCTTAAGATTCCATTTGGGAGCA
66 TCACGCTAACTATTTTGGAGGTTGCGGTATTGAACCTGCAAACCTTAAGATTCAAATTGGGAGCG
74286656 TAAGCTCGCG
131 TAAGCTCGCG
* * * *** * *
74286666 CTAACTATTTTAGAGGTTACAATATTAAACCTACGAGCCTTAAGATTCTAGTTGGGAGCATAGGC
1 CTAACTGTTTTGGAGGCTATGGTATTGAACCTACGAGCCTTAAGATTCTAGTTGGGAGCGTAGGC
* * * ** * * * * * *
74286731 TCACGGTAATTACTTTGGAGGTTGTTGTATTTAGCCTACGAACCTTAAGATTACAGA-TGGCAGC
66 TCACGCTAACTATTTTGGAGGTTGCGGTATTGAACCTGCAAACCTTAAGATT-CAAATTGGGAGC
* * *
74286795 GTAGGCTCACA
130 GTAAGCTCGCG
* * * * * ** * * *
74286806 TTAACTATTTTGGAGGCTATGGTATTGAACTTGCGAGCCTTAATATTAGAGCTAGGAGTGTAGGC
1 CTAACTGTTTTGGAGGCTATGGTATTGAACCTACGAGCCTTAAGATTCTAGTTGGGAGCGTAGGC
* * * * *
74286871 TCACGCTAACTATTTTAGAGGTTGTGGTATTGAACTTGCAAGCCTTAAGATT-ATAGTTGGGAGC
66 TCACGCTAACTATTTTGGAGGTTGCGGTATTGAACCTGCAAACCTTAAGATTCA-AATTGGGAGC
*
74286935 GTAGGCTCGCG
130 GTAAGCTCGCG
* * * **
74286946 GTAACTGTTTTGAAGG-TTTGGGTATTGAACCTACGAGCCTTAAGATTAC-AGTTGGGAGTTTAG
1 CTAACTGTTTTGGAGGCTAT-GGTATTGAACCTACGAGCCTTAAGATT-CTAGTTGGGAGCGTAG
** * * * *
74287009 GCTCGTGCTAACTATTTTAGAGGCTGTGATATTGAAC
64 GCTCACGCTAACTATTTTGGAGGTTGCGGTATTGAAC
74287046 TTGTGAGCCT
Statistics
Matches: 410, Mismatches: 104, Indels: 12
0.78 0.20 0.02
Matches are distributed among these distances:
138 1 0.00
139 4 0.01
140 404 0.99
141 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (140 bp):
CTAACTGTTTTGGAGGCTATGGTATTGAACCTACGAGCCTTAAGATTCTAGTTGGGAGCGTAGGC
TCACGCTAACTATTTTGGAGGTTGCGGTATTGAACCTGCAAACCTTAAGATTCAAATTGGGAGCG
TAAGCTCGCG
Found at i:74286981 original size:210 final size:209
Alignment explanation
Indices: 74286386--74287060 Score: 672
Period size: 210 Copynumber: 3.2 Consensus size: 209
74286376 TAGGCTTGCC
* * * * *
74286386 CTAACTGTTTTGGAGGCTGCAGTATTGAACCTACGAGCCTTAAGATTCTAGCTGAGAGCGTAAGC
1 CTAACTATTTTGGAGGCTGCGGTATTGAACTTGCGAGCCTTAAGATTCCAGCTG-GAGCGTAAGC
* * * * * * **
74286451 TCGCGTTAACTATTTTGGAGGCTGCGTTATTGAACCTGCGAGACTTAGGATTCA-AACTGGGAGC
65 TCGCGCTAACTATTTTAGAGGTTGCGATATTGAACCTGCGAGCCTTAAGATT-ATAGTTGGGAGC
* * * * * **
74286515 GTAAGCTTGCGCTAATTGTTTTAAAGGCTGTGGTATTGAACCTACGAGCCAAAAGATT-CTAGTT
129 GTAGGCTCGCGGTAATTGTTTTGAAGGTTGTGGTATTGAACCTACGAGCCTTAAGATTAC-AGTT
74286579 GGGAGCGTAGGCTCACG
193 GGGAGCGTAGGCTCACG
* * * * * ** *
74286596 CTAACTCTTTTGGAGGATGCGGTACTGAACTTGCAAACCTTAAGATTCCATTTGGGAGCATAAGC
1 CTAACTATTTTGGAGGCTGCGGTATTGAACTTGCGAGCCTTAAGATTCCAGCT-GGAGCGTAAGC
* * * * * *
74286661 TCGCGCTAACTATTTTAGAGGTTACAATATTAAACCTACGAGCCTTAAGATTCTAGTTGGGAGCA
65 TCGCGCTAACTATTTTAGAGGTTGCGATATTGAACCTGCGAGCCTTAAGATTATAGTTGGGAGCG
* ** * * * * * *
74286726 TAGGCTCACGGTAATTACTTTGGAGGTTGTTGTATTTAGCCTACGAACCTTAAGATTACAGATGG
130 TAGGCTCGCGGTAATTGTTTTGAAGGTTGTGGTATTGAACCTACGAGCCTTAAGATTACAGTTGG
* *
74286791 CAGCGTAGGCTCACA
195 GAGCGTAGGCTCACG
* ** * ** * *
74286806 TTAACTATTTTGGAGGCTATGGTATTGAACTTGCGAGCCTTAATATTAGAGCTAGGAGTGTAGGC
1 CTAACTATTTTGGAGGCTGCGGTATTGAACTTGCGAGCCTTAAGATTCCAGCT-GGAGCGTAAGC
* * * * *
74286871 TCACGCTAACTATTTTAGAGGTTGTGGTATTGAACTTGCAAGCCTTAAGATTATAGTTGGGAGCG
65 TCGCGCTAACTATTTTAGAGGTTGCGATATTGAACCTGCGAGCCTTAAGATTATAGTTGGGAGCG
*
74286936 TAGGCTCGCGGTAACTGTTTTGAAGGTT-TGGGTATTGAACCTACGAGCCTTAAGATTACAGTTG
130 TAGGCTCGCGGTAATTGTTTTGAAGGTTGT-GGTATTGAACCTACGAGCCTTAAGATTACAGTTG
** **
74287000 GGAGTTTAGGCTCGTG
194 GGAGCGTAGGCTCACG
* * * *
74287016 CTAACTATTTTAGAGGCTGTGATATTGAACTTGTGAGCCTTAAGA
1 CTAACTATTTTGGAGGCTGCGGTATTGAACTTGCGAGCCTTAAGA
74287061 ATGCCCTGTC
Statistics
Matches: 367, Mismatches: 94, Indels: 8
0.78 0.20 0.02
Matches are distributed among these distances:
209 1 0.00
210 364 0.99
211 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (209 bp):
CTAACTATTTTGGAGGCTGCGGTATTGAACTTGCGAGCCTTAAGATTCCAGCTGGAGCGTAAGCT
CGCGCTAACTATTTTAGAGGTTGCGATATTGAACCTGCGAGCCTTAAGATTATAGTTGGGAGCGT
AGGCTCGCGGTAATTGTTTTGAAGGTTGTGGTATTGAACCTACGAGCCTTAAGATTACAGTTGGG
AGCGTAGGCTCACG
Found at i:74287054 original size:70 final size:70
Alignment explanation
Indices: 74286375--74287060 Score: 439
Period size: 70 Copynumber: 9.8 Consensus size: 70
74286365 TCACGTATCA
* * * * ** * * *
74286375 GTAGGCTTGCCCTAACTGTTTTGGAGGCTGCAGTATTGAACCTACGAGCCTTAAGATT-CTAGCT
1 GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGATTAC-AGTT
* *
74286439 GAGAGC
65 GGGAGT
* * * * * * * * **
74286445 GTAAGCTCGCGTTAACTATTTTGGAGGCTGCGTTATTGAACCTGCGAGACTTAGGATT-CAAACT
1 GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGATTAC-AGTT
*
74286509 GGGAGC
65 GGGAGT
* * * * * * * **
74286515 GTAAGCTTGCGCTAATTGTTTTAAAGGCTGTGGTATTGAACCTACGAGCCAAAAGATT-CTAGTT
1 GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGATTAC-AGTT
*
74286579 GGGAGC
65 GGGAGT
* * * * * * * * * *
74286585 GTAGGCTCACGCTAACTCTTTTGGAGGATGCGGTACTGAACTTGCAAACCTTAAGATTCCATTTG
1 GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGATTACAGTTG
*
74286650 GGAGC
66 GGAGT
* * * **** * * *
74286655 ATAAGCTCGCGCTAACTATTTTAGAGGTTACAATATTAAACCTACGAGCCTTAAGATT-CTAGTT
1 GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGATTAC-AGTT
*
74286719 GGGAGC
65 GGGAGT
* * * * * * * * * * * * * *
74286725 ATAGGCTCACGGTAATTACTTTGGAGGTTGTTGTATTTAGCCTACGAACCTTAAGATTACAGATG
1 GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGATTACAGTTG
* *
74286790 GCAGC
66 GGAGT
* ** * * * * * *
74286795 GTAGGCTCACATTAACTATTTTGGAGGCTATGGTATTGAACTTGCGAGCCTTAATATTAGAGCTA
1 GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGATTACAGTTG
74286860 GGAGT
66 GGAGT
* * * *
74286865 GTAGGCTCACGCTAACTATTTTAGAGGTTGTGGTATTGAACTTGCAAGCCTTAAGATTATAGTTG
1 GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGATTACAGTTG
*
74286930 GGAGC
66 GGAGT
* * * * *
74286935 GTAGGCTCGCGGTAACTGTTTT-GAAGG-TTTGGGTATTGAACCTACGAGCCTTAAGATTACAGT
1 GTAGGCTCGCGCTAACTATTTTAG-AGGCTGT-GGTATTGAACTTGCGAGCCTTAAGATTACAGT
74286998 TGGGAGT
64 TGGGAGT
* * * *
74287005 TTAGGCTCGTGCTAACTATTTTAGAGGCTGTGATATTGAACTTGTGAGCCTTAAGA
1 GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGA
74287061 ATGCCCTGTC
Statistics
Matches: 484, Mismatches: 125, Indels: 14
0.78 0.20 0.02
Matches are distributed among these distances:
69 4 0.01
70 475 0.98
71 5 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (70 bp):
GTAGGCTCGCGCTAACTATTTTAGAGGCTGTGGTATTGAACTTGCGAGCCTTAAGATTACAGTTG
GGAGT
Found at i:74292355 original size:42 final size:40
Alignment explanation
Indices: 74292274--74292356 Score: 112
Period size: 40 Copynumber: 2.0 Consensus size: 40
74292264 ACACACCTAC
* * *
74292274 AATTAGATAAAGAAGATAAAAAGAGGTAAATTGAAATTCT
1 AATTAGAAAAAGAAGATAAAAAAAGGTAAATTCAAATTCT
*
74292314 AATTAGAAAAAGAAGATAAAAAAATGGTAGAATTCTAATTCT
1 AATTAGAAAAAGAAGATAAAAAAA-GGTA-AATTCAAATTCT
74292356 A
1 A
74292357 TTGGAATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
40 22 0.59
41 4 0.11
42 11 0.30
ACGTcount: A:0.55, C:0.04, G:0.16, T:0.25
Consensus pattern (40 bp):
AATTAGAAAAAGAAGATAAAAAAAGGTAAATTCAAATTCT
Found at i:74300664 original size:42 final size:41
Alignment explanation
Indices: 74300618--74300698 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 41
74300608 CAGAAGCTCA
*
74300618 TAAGAGCTGAA-TGAAAACCTAGTAGGGTTAAACTGAAACTCG
1 TAAGAGCTGAACT-AAAACCCAGTAGGGTT-AACTGAAACTCG
* *
74300660 TAAGAGTTGAACTAAAACCCATTAGGGTTAACTGAAACT
1 TAAGAGCTGAACTAAAACCCAGTAGGGTTAACTGAAACT
74300699 TATATAAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
41 10 0.29
42 24 0.69
43 1 0.03
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (41 bp):
TAAGAGCTGAACTAAAACCCAGTAGGGTTAACTGAAACTCG
Found at i:74300672 original size:21 final size:21
Alignment explanation
Indices: 74300589--74300677 Score: 56
Period size: 21 Copynumber: 4.2 Consensus size: 21
74300579 AGTATTAACA
* * *
74300589 GAAACTCGTAAGGGTTGCACA
1 GAAACTCGTAAGAGTTGAACT
* * *
74300610 GAAGCTCATAAGAGCTGAA-T
1 GAAACTCGTAAGAGTTGAACT
* * *
74300630 GAAAACCTAGT-AGGGTTAAACT
1 G-AAA-CTCGTAAGAGTTGAACT
74300652 GAAACTCGTAAGAGTTGAACT
1 GAAACTCGTAAGAGTTGAACT
*
74300673 AAAAC
1 GAAAC
74300678 CCATTAGGGT
Statistics
Matches: 48, Mismatches: 16, Indels: 8
0.67 0.22 0.11
Matches are distributed among these distances:
20 5 0.10
21 38 0.79
22 5 0.10
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (21 bp):
GAAACTCGTAAGAGTTGAACT
Found at i:74307498 original size:41 final size:41
Alignment explanation
Indices: 74307441--74307555 Score: 164
Period size: 41 Copynumber: 2.9 Consensus size: 41
74307431 TACTTATCCC
*
74307441 TCAAAAGTTTA-ATTAAATAATGTTATTAACAATAAAAAAA
1 TCAAAATTTTAGATTAAATAATGTTATTAACAATAAAAAAA
*
74307481 TCAAAATTTTAGATTAAATAA-GTTATTAACAATACAAAAA
1 TCAAAATTTTAGATTAAATAATGTTATTAACAATAAAAAAA
* *
74307521 TCCAAAATTTTAGCTTAAA-AATATTATTAACAATA
1 T-CAAAATTTTAGATTAAATAATGTTATTAACAATA
74307556 GAATATTTAT
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
40 31 0.46
41 37 0.54
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.34
Consensus pattern (41 bp):
TCAAAATTTTAGATTAAATAATGTTATTAACAATAAAAAAA
Found at i:74307839 original size:20 final size:20
Alignment explanation
Indices: 74307814--74307851 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74307804 GACTAAATTG
74307814 AAAACTTTAG-AAAATTTTAC
1 AAAAC-TTAGAAAAATTTTAC
74307834 AAAACTTAGAAAAATTTT
1 AAAACTTAGAAAAATTTT
74307852 CACTAAACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
AAAACTTAGAAAAATTTTAC
Found at i:74313400 original size:32 final size:32
Alignment explanation
Indices: 74313358--74313420 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
74313348 GTTGATTGAT
* * *
74313358 TAATTTTATAATTCGTTTAATTCGATCAATGG
1 TAATTGTATAATTCATTAAATTCGATCAATGG
*
74313390 TAATTGTATAATTCATTAAATTGGATCAATG
1 TAATTGTATAATTCATTAAATTCGATCAATG
74313421 ATTGTACAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (32 bp):
TAATTGTATAATTCATTAAATTCGATCAATGG
Found at i:74320045 original size:42 final size:42
Alignment explanation
Indices: 74319994--74320199 Score: 367
Period size: 42 Copynumber: 4.9 Consensus size: 42
74319984 GTTTACAAAC
* * *
74319994 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGACGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
74320036 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
74320078 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
74320120 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
74320162 AAAAACGCCGCTAAAGAACATGTTCTTTAGTGGCGCTT
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
74320200 TTATACAAAA
Statistics
Matches: 159, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 159 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
Found at i:74320291 original size:14 final size:14
Alignment explanation
Indices: 74320268--74320301 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
74320258 GCCCTCCTGT
*
74320268 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
74320282 AGCAACATTTCAAA
1 AGCAACATTTCAAA
74320296 AGCAAC
1 AGCAAC
74320302 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:74320576 original size:21 final size:21
Alignment explanation
Indices: 74320508--74320578 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
74320498 TTTTGCTCTG
*
74320508 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCTCTCGCTGCAGC
* * *
74320529 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCTCTCGCTGCAGC
* * *
74320550 CGCTGCTTCTCTCGCTTCCGC
1 CTCTGCTTCTCTCGCTGCAGC
74320571 CTCTGCTT
1 CTCTGCTT
74320579 TAAGTTGTAG
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.03, C:0.44, G:0.18, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCTCTCGCTGCAGC
Found at i:74326051 original size:18 final size:18
Alignment explanation
Indices: 74326028--74326192 Score: 69
Period size: 18 Copynumber: 9.5 Consensus size: 18
74326018 AATTGCAATG
74326028 GTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
74326046 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
74326064 GTAAGTTAAATGTAAG-T-T
1 GTAAGTT--ATGTAAGTTAT
*
74326082 GTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAG--TTAT
74326101 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
*
74326119 GT-A-TTGTGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
74326133 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
74326151 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
*
74326167 -TATGTATTATGTAAG-T-T
1 GTAAG--TTATGTAAGTTAT
74326184 GTAAGTTAT
1 GTAAGTTAT
74326193 TATGTATTGT
Statistics
Matches: 116, Mismatches: 5, Indels: 54
0.66 0.03 0.31
Matches are distributed among these distances:
14 6 0.05
15 8 0.07
16 14 0.12
17 8 0.07
18 61 0.53
19 15 0.13
20 4 0.03
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (18 bp):
GTAAGTTATGTAAGTTAT
Found at i:74326076 original size:11 final size:9
Alignment explanation
Indices: 74326028--74326192 Score: 69
Period size: 7 Copynumber: 19.0 Consensus size: 9
74326018 AATTGCAATG
74326028 GTAAGTTAT
1 GTAAGTTAT
74326037 GTAAGTTAT
1 GTAAGTTAT
74326046 GTAAGTTAAAT
1 GTAAGTT--AT
74326057 GT-A-TTAT
1 GTAAGTTAT
74326064 GTAAGTTAAAT
1 GTAAGTT--AT
74326075 GTAAG-T-T
1 GTAAGTTAT
74326082 GTAAGTTAT
1 GTAAGTTAT
*
74326091 -TATGTATTAT
1 GTAAG--TTAT
74326101 GTAAG-T-T
1 GTAAGTTAT
74326108 GTAAGTTAAAT
1 GTAAGTT--AT
*
74326119 GT-A-TTGT
1 GTAAGTTAT
74326126 GTAAG-T-T
1 GTAAGTTAT
74326133 GTAAGTTAAAT
1 GTAAGTT--AT
74326144 GT-A-TTAT
1 GTAAGTTAT
74326151 GTAAG-T-T
1 GTAAGTTAT
74326158 GTAAGTTAT
1 GTAAGTTAT
*
74326167 -TATGTATTAT
1 GTAAG--TTAT
74326177 GTAAG-T-T
1 GTAAGTTAT
74326184 GTAAGTTAT
1 GTAAGTTAT
74326193 TATGTATTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 60
0.65 0.03 0.32
Matches are distributed among these distances:
7 41 0.34
8 18 0.15
9 27 0.22
10 12 0.10
11 23 0.19
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:74326107 original size:26 final size:26
Alignment explanation
Indices: 74326073--74326485 Score: 524
Period size: 26 Copynumber: 16.1 Consensus size: 26
74326063 TGTAAGTTAA
74326073 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
74326099 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
74326124 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
74326149 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
74326175 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* * *
74326201 GTGTAAGTTGCAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
74326226 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
74326252 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
74326278 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
74326304 ATGTAAGTTGTAAGTT-GTAAGTTATT
1 ATGTAAGTTGTAAGTTATTATG-TATT
* * * *
74326330 ATGT-ATTGTGTAAGTT-GTAAGT-TAA
1 ATGTAAGT-TGTAAGTTATTATGTAT-T
* * * *
74326355 ATGT-ATTATGTCAGTCA-AATGTATT
1 ATGTAAGT-TGTAAGTTATTATGTATT
*
74326380 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
74326405 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
74326431 ATGTAAGTAATGTAAGTTA-AATGTATT
1 ATGTAAGT--TGTAAGTTATTATGTATT
74326458 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
74326484 AT
1 AT
74326486 TTAATAAAAT
Statistics
Matches: 347, Mismatches: 28, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
24 1 0.00
25 136 0.39
26 186 0.54
27 15 0.04
28 9 0.03
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:74326409 original size:18 final size:18
Alignment explanation
Indices: 74326345--74326466 Score: 74
Period size: 18 Copynumber: 6.4 Consensus size: 18
74326335 TTGTGTAAGT
74326345 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
* *
74326363 TGTCAGTCAAATGTATTATGTAA
1 TGTAAGTTAAATG---TAT-T-A
74326386 GTTGTAAGTTAAATGTATTA
1 --TGTAAGTTAAATGTATTA
*
74326406 TGTAAGTTGTAA-GTTATTA
1 TGTAAGTT-AAATG-TATTA
*
74326425 TGT-A-TT--ATGTAAGTAA
1 TGTAAGTTAAATGT-A-TTA
74326441 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
74326459 TGTAAGTT
1 TGTAAGTT
74326467 GTAAGTTATT
Statistics
Matches: 81, Mismatches: 7, Indels: 32
0.68 0.06 0.27
Matches are distributed among these distances:
14 2 0.02
15 2 0.02
16 5 0.06
17 3 0.04
18 33 0.41
19 11 0.14
20 5 0.06
21 4 0.05
22 4 0.05
23 1 0.01
25 11 0.14
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:74326478 original size:19 final size:19
Alignment explanation
Indices: 74326171--74326481 Score: 101
Period size: 19 Copynumber: 16.5 Consensus size: 19
74326161 AGTTATTATG
74326171 TATTATGTAAGTTGTAAGT
1 TATTATGTAAGTTGTAAGT
74326190 TATTATGT-A-TTGT--GT
1 TATTATGTAAGTTGTAAGT
* * * *
74326205 AAGT-TGCAAG-T-TAAAT
1 TATTATGTAAGTTGTAAGT
74326221 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
*
74326241 TATTATGT-ATTATGTAAG-
1 TATTATGTAAGT-TGTAAGT
* *
74326259 ---T-TGTAAGTTATTA-T
1 TATTATGTAAGTTGTAAGT
*
74326273 GTATTGTGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
*
74326293 TATTATGT-ATTATGTAAGT
1 TATTATGTAAGT-TGTAAGT
* * * *
74326312 TGTAAGTTGTAAGTTATTA-T
1 TATTA--TGTAAGTTGTAAGT
*
74326332 GTATTGTGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
* * *
74326352 TAAATGTAT-TATGTCAGTCAAAT
1 T--AT-TATGTAAGT-TGT-AAGT
74326375 GTATTATGTAAGTTGTAAGTTAAAT
1 -TATTATGTAAGTTGTAAG-----T
74326400 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
*
74326420 TATTATGT-ATTATGTAAG-
1 TATTATGTAAGT-TGTAAGT
*
74326438 TA--ATGTAAG-T-TAAAT
1 TATTATGTAAGTTGTAAGT
74326453 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
74326473 TATTATGTA
1 TATTATGTA
74326482 TTATTTAATA
Statistics
Matches: 212, Mismatches: 37, Indels: 86
0.63 0.11 0.26
Matches are distributed among these distances:
14 12 0.06
15 10 0.05
16 7 0.03
17 7 0.03
18 22 0.10
19 85 0.40
20 14 0.07
21 19 0.09
22 12 0.06
23 3 0.01
24 1 0.00
25 20 0.09
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (19 bp):
TATTATGTAAGTTGTAAGT
Found at i:74326679 original size:74 final size:74
Alignment explanation
Indices: 74326522--74326669 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
74326512 ACATTACTAA
74326522 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
74326587 TATTTTTTT
66 TATTTTTTT
74326596 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
74326661 TATTTTTTT
66 TATTTTTTT
74326670 ATATTTTATT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (74 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTTT
Found at i:74326837 original size:13 final size:13
Alignment explanation
Indices: 74326819--74326889 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
74326809 ATTTATAATT
74326819 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
74326832 ATTTAAGTAACAT
1 ATTTAAGTAATAA
74326845 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
74326858 ATTTAAGTAACAT
1 ATTTAAGTAATAA
74326871 ATTTAAGTAATAA
1 ATTTAAGTAATAA
74326884 ATTTAA
1 ATTTAA
74326890 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:74326848 original size:26 final size:26
Alignment explanation
Indices: 74326818--74326889 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
74326808 TATTTATAAT
74326818 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
74326844 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
74326870 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
74326890 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:74326916 original size:17 final size:17
Alignment explanation
Indices: 74326894--74327192 Score: 161
Period size: 17 Copynumber: 16.6 Consensus size: 17
74326884 ATTTAAACAA
74326894 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
74326911 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
74326928 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
74326945 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* * *
74326968 ATTTAAGTAATTAAT-A
1 ATTTTAGTAAGTAATGT
* *
74326984 AATTTA--AA-CAA---
1 ATTTTAGTAAGTAATGT
74326995 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
74327012 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
74327029 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
74327046 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* *
74327069 ATTTTAG-AAATAAATTT
1 ATTTTAGTAAGT-AATGT
*
74327086 AAACAAATTTATGTAAGTAATGT
1 -----ATTTTA-GTAAGTAATGT
74327109 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
74327126 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
74327143 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
74327166 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
74327183 ATTTTAGTAA
1 ATTTTAGTAA
74327193 TAAATTTAAC
Statistics
Matches: 224, Mismatches: 20, Indels: 76
0.70 0.06 0.24
Matches are distributed among these distances:
11 5 0.02
13 4 0.02
14 4 0.02
16 10 0.04
17 137 0.61
18 5 0.02
22 5 0.02
23 48 0.21
24 6 0.03
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Done.