Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 229 of 316
Found at i:75128557 original size:23 final size:22
Alignment explanation
Indices: 75128527--75128574 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
75128517 AAATTAAAAT
*
75128527 CCTTTATTTTCTGCCTTGCTTA
1 CCTTTATTTTCTACCTTGCTTA
*
75128549 CCTTATATTTTCTACCTTGTTTA
1 CCTT-TATTTTCTACCTTGCTTA
75128572 CCT
1 CCT
75128575 GACTGTTGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.12, C:0.27, G:0.06, T:0.54
Consensus pattern (22 bp):
CCTTTATTTTCTACCTTGCTTA
Found at i:75132359 original size:219 final size:219
Alignment explanation
Indices: 75131975--75132416 Score: 848
Period size: 219 Copynumber: 2.0 Consensus size: 219
75131965 ACTGTGGGCC
*
75131975 TACTGTAGGGTCGGTAAGCTTACCTAGACCCCTAATTGACTGAAATGACTGTATGACTGATATGA
1 TACTGTAGGGTCAGTAAGCTTACCTAGACCCCTAATTGACTGAAATGACTGTATGACTGATATGA
*
75132040 TTAAGCCTGATGATGTCCCATTGATTTGATACTGTATGCCCTATTTACATGCATGATATTATGTT
66 TTAAGCCTGATGATGTCCCATTAATTTGATACTGTATGCCCTATTTACATGCATGATATTATGTT
*
75132105 ATAACACGTCATATCCGTATATTGCATTGTATTGGGTTGGGGGATTTTAATGTTCAGAGGAAGTG
131 ATAACACGTCATATCCGTATATTGCATTATATTGGGTTGGGGGATTTTAATGTTCAGAGGAAGTG
75132170 TACTGAAAGGCCTCGAGCCTAATT
196 TACTGAAAGGCCTCGAGCCTAATT
75132194 TACTGTAGGGTCAGTAAGCTTACCTAGACCCCTAATTGACTGAAATGACTGTATGACTGATATGA
1 TACTGTAGGGTCAGTAAGCTTACCTAGACCCCTAATTGACTGAAATGACTGTATGACTGATATGA
75132259 TTAAGCCTGATGATGTCCCATTAATTTGATACTGTATGCCCTATTTACATGCATGATATTATGTT
66 TTAAGCCTGATGATGTCCCATTAATTTGATACTGTATGCCCTATTTACATGCATGATATTATGTT
*
75132324 ATAACACGTCATATCTGTATATTGCATTATATTGGGTTGGGGGATTTTAATGTTCAGAGGAAGTG
131 ATAACACGTCATATCCGTATATTGCATTATATTGGGTTGGGGGATTTTAATGTTCAGAGGAAGTG
75132389 TACTGAAAGGCCTCGAGCCTAATT
196 TACTGAAAGGCCTCGAGCCTAATT
75132413 TACT
1 TACT
75132417 AGCAGCTTAG
Statistics
Matches: 219, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
219 219 1.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (219 bp):
TACTGTAGGGTCAGTAAGCTTACCTAGACCCCTAATTGACTGAAATGACTGTATGACTGATATGA
TTAAGCCTGATGATGTCCCATTAATTTGATACTGTATGCCCTATTTACATGCATGATATTATGTT
ATAACACGTCATATCCGTATATTGCATTATATTGGGTTGGGGGATTTTAATGTTCAGAGGAAGTG
TACTGAAAGGCCTCGAGCCTAATT
Found at i:75133091 original size:18 final size:18
Alignment explanation
Indices: 75133062--75133123 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
75133052 AAAAAAATGT
*
75133062 TTTGAAATTGAATAACGA
1 TTTGAAAATGAATAACGA
* * *
75133080 TTTGTAAATGAATAATGT
1 TTTGAAAATGAATAACGA
*
75133098 TTTGAAAATGAACGACACGA
1 TTTGAAAATGAA-TA-ACGA
75133118 TTTGAA
1 TTTGAA
75133124 GTTAACATAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
18 25 0.74
19 1 0.03
20 8 0.24
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (18 bp):
TTTGAAAATGAATAACGA
Found at i:75135055 original size:44 final size:44
Alignment explanation
Indices: 75134994--75135419 Score: 318
Period size: 44 Copynumber: 9.8 Consensus size: 44
75134984 ACTAGATGCG
* * *
75134994 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTA-TCACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATTCGCTTTA
* * * * * *
75135037 ATCCGCTCCGCTGCAACTTTAGGGAGATAGGATTAGTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTCGCTTTA
* *
75135081 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCA-TCATCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ATTC-GCTTTA
* * *
75135126 ATCTGCCCCACTGCAACTTCAGGGGGATAAGATCTATTTGC-TTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATTCGCTTTA
** * * *
75135170 GCCTGCTCCGCTGCAACTTCAGGGAGATAGGATTATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTCGCTTTA
*
75135214 ATATGCTCCACTGCAACTTCAGGGAGATAAGA-T-TT-GCTTATTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTCGC-T-TT-A
* * * * ** * ** *
75135258 GTCTGCTTCGCTACAAGATCAGGGAGATAAGACTAAACGC---G
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTCGCTTTA
* * * * **
75135299 ATCTTCT-CTCTGCAACTTCAGAGAGATAAGATCT-GTCATTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATTCGCTTTA
* * *
75135342 ATCTGCTCCACTGTAACTTCAGGGAGATAGGATTATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTCGCTTTA
* * *
75135386 ATTTGCTACACTGCAACTTCAGGGAGATAGGATT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
75135420 TGTGGTTTTA
Statistics
Matches: 298, Mismatches: 66, Indels: 37
0.74 0.16 0.09
Matches are distributed among these distances:
40 20 0.07
41 8 0.03
42 3 0.01
43 24 0.08
44 200 0.67
45 39 0.13
46 2 0.01
47 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTCGCTTTA
Found at i:75140766 original size:12 final size:12
Alignment explanation
Indices: 75140749--75140786 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
75140739 ATAAAAGAGA
75140749 AATAATACTAAT
1 AATAATACTAAT
75140761 AATAATACTAAT
1 AATAATACTAAT
*
75140773 AATAATAATAAT
1 AATAATACTAAT
75140785 AA
1 AA
75140787 ACCAATTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (12 bp):
AATAATACTAAT
Found at i:75140806 original size:3 final size:3
Alignment explanation
Indices: 75140749--75140786 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
75140739 ATAAAAGAGA
* *
75140749 AAT AAT ACT AAT AAT AAT ACT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
75140787 ACCAATTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:75145555 original size:18 final size:17
Alignment explanation
Indices: 75145534--75145576 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
75145524 AAAAAAATGT
75145534 TTTGAAATTGAATAACGA
1 TTTGAAA-TGAATAACGA
* *
75145552 TTTGTAAATGAATAATGT
1 TTTG-AAATGAATAACGA
75145570 TTTGAAA
1 TTTGAAA
75145577 ACGAACGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 16 0.73
19 3 0.14
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (17 bp):
TTTGAAATGAATAACGA
Found at i:75146394 original size:114 final size:114
Alignment explanation
Indices: 75146256--75146480 Score: 423
Period size: 114 Copynumber: 2.0 Consensus size: 114
75146246 AACTTTGGAT
75146256 AATGTTTTAGGGTTTTTCTTTTTTGCATGATTTGTTATGTTAAATTATAATTGAAATAATTTGAA
1 AATGTTTTAGGGTTTTTCTTTTTTGCATGATTTGTTATGTTAAATTATAATTGAAATAATTTGAA
75146321 GAAACAAAACTAAAATGACAAACTATTTTTATAACAAAATTTATTATAA
66 GAAACAAAACTAAAATGACAAACTATTTTTATAACAAAATTTATTATAA
* *
75146370 AATGTTTTAGGGTTTTTCTTTTTTGCATGATTTGTTATTTTATATTATAATTGAAATAATTTGAA
1 AATGTTTTAGGGTTTTTCTTTTTTGCATGATTTGTTATGTTAAATTATAATTGAAATAATTTGAA
*
75146435 GAAACAAAACTAAAATGACAGACTATTTTTATAACAAAATTTATTA
66 GAAACAAAACTAAAATGACAAACTATTTTTATAACAAAATTTATTA
75146481 GACTCCAAGT
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 108 1.00
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (114 bp):
AATGTTTTAGGGTTTTTCTTTTTTGCATGATTTGTTATGTTAAATTATAATTGAAATAATTTGAA
GAAACAAAACTAAAATGACAAACTATTTTTATAACAAAATTTATTATAA
Found at i:75158176 original size:21 final size:20
Alignment explanation
Indices: 75158152--75158191 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
75158142 TGGAACTTAT
75158152 ATTTTTTAAATTTTGAAAATC
1 ATTTTTT-AATTTTGAAAATC
*
75158173 ATTTTTTTATTTTGAAAAT
1 ATTTTTTAATTTTGAAAAT
75158192 TTAAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (20 bp):
ATTTTTTAATTTTGAAAATC
Found at i:75167487 original size:23 final size:22
Alignment explanation
Indices: 75167461--75167513 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
75167451 TTAAGAGTGA
*
75167461 AAAAGAAATT-GAAGAAAGAAGAG
1 AAAAGAAATTAGAA-AAAGAA-AC
75167484 AAAATG-AATTAGAAAAAGAAAC
1 AAAA-GAAATTAGAAAAAGAAAC
75167506 AAAAGAAA
1 AAAAGAAA
75167514 AAGACGTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 1 0.04
22 7 0.27
23 14 0.54
24 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (22 bp):
AAAAGAAATTAGAAAAAGAAAC
Found at i:75170357 original size:91 final size:91
Alignment explanation
Indices: 75170210--75170417 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
75170200 TTGATTTTAG
* *
75170210 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
75170275 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
75170302 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
75170367 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
75170393 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
75170418 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:75170386 original size:26 final size:28
Alignment explanation
Indices: 75170332--75170392 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
75170322 TATTATCAAG
* *
75170332 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
75170360 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
75170386 AATTATA
1 AATTATA
75170393 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:75170392 original size:44 final size:43
Alignment explanation
Indices: 75170250--75170392 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
75170240 GAATTTTATG
* *
75170250 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
75170294 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
75170341 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
75170385 AAATTATA
1 AAATTATA
75170393 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:75170492 original size:64 final size:63
Alignment explanation
Indices: 75170423--75170738 Score: 228
Period size: 64 Copynumber: 5.1 Consensus size: 63
75170413 TATTAGTTAT
75170423 AATTATTTTAAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCA
1 AATTA-TTTAAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCA
* * * ** * * * ** *
75170487 AATTA--T--ATTTTA-TAGAATCATATATTATGATTTGAGTA-AATTCATA-TAAGAATATTAA
1 AATTATTTAAATTTTATTA-AGTCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCA
*
75170545 TAATTATTAAGAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCA
1 -AATTATTTA-AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCA
* * * * ** * * * ** *
75170610 AATTATCTT---TTATAGT-A-TCATATATTATGATTTGAGTA-AATTCATA-TAAGAATATTAA
1 AATTAT-TTAAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCA
*
75170668 TAATTATTAAGAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCA
1 -AATTATTTA-AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCA
75170733 AATTAT
1 AATTAT
75170739 CTTTTATAGT
Statistics
Matches: 181, Mismatches: 49, Indels: 44
0.66 0.18 0.16
Matches are distributed among these distances:
57 10 0.06
58 21 0.12
59 50 0.28
60 1 0.01
61 6 0.03
62 5 0.03
63 1 0.01
64 56 0.31
65 21 0.12
66 10 0.06
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (63 bp):
AATTATTTAAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCA
Found at i:75170510 original size:59 final size:58
Alignment explanation
Indices: 75170445--75170997 Score: 254
Period size: 59 Copynumber: 9.2 Consensus size: 58
75170435 TTTTATTAAG
75170445 TCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGAA
1 TCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGAA
* * ** * * *
75170504 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATAATTATTAA-GA-ATTTTATTA-
1 TCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATT-TAAATTATATTTTA-TAG
*
75170566 AG
57 AA
* *
75170568 TCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGTA
1 TCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGAA
* * ** * * *
75170627 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATAATTATTAA-GA-ATTTTATTA-
1 TCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATT-TAAATTATATTTTA-TAG
*
75170689 AG
57 AA
* *
75170691 TCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGTA
1 TCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGAA
* * ** **
75170750 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTA-TT-AA--GGATTTTATTA-A
1 TCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTAAATTATATTTTA-TAGA
75170810 A
58 A
* * * *
75170811 TTATATA-TTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTA
1 TCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGAA
* * ** * * * * * * * *
75170869 TCATATATTATGATTTGAGTA-AATTCATATAAGAATATTGATTATTAAGGATTTTATTA-AA
1 TCATATATTTTAATTAAAATATATTTAATATTA-ATTATTTA-AATT-A-TATTTTA-TAGAA
* * * *
75170930 TTATATATTTTAA-TAATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTA
1 TCATATATTTTAATTAA-AATATATTTAATATTAATTAT-TTAAATTATATTTTATAGAA
75170989 TCATATATT
1 TCATATATT
75170998 ATGATTTGAG
Statistics
Matches: 355, Mismatches: 89, Indels: 100
0.65 0.16 0.18
Matches are distributed among these distances:
53 10 0.03
54 4 0.01
55 3 0.01
56 6 0.02
57 30 0.08
58 39 0.11
59 72 0.20
60 22 0.06
61 41 0.12
62 15 0.04
63 19 0.05
64 33 0.09
65 20 0.06
66 39 0.11
67 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (58 bp):
TCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGAA
Found at i:75170820 original size:17 final size:17
Alignment explanation
Indices: 75170800--75170833 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75170790 ATTATTAAGG
* *
75170800 ATTTTATTAAATTATAT
1 ATTTAATTAAAATATAT
75170817 ATTTAATTAAAATATAT
1 ATTTAATTAAAATATAT
75170834 TTAATAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTAATTAAAATATAT
Found at i:75170961 original size:18 final size:16
Alignment explanation
Indices: 75170932--75170973 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
75170922 TTATTAAATT
75170932 ATATATTTTAATAATA
1 ATATATTTTAATAATA
75170948 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
*
75170963 AT-TATGTTAAT
1 ATATATTTTAAT
75170974 TTATATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 2 0.08
15 17 0.71
16 5 0.21
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:75171005 original size:239 final size:243
Alignment explanation
Indices: 75170419--75171095 Score: 1073
Period size: 239 Copynumber: 2.8 Consensus size: 243
75170409 AATTTATTAG
*
75170419 TTATAATTATTTTA-AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT
1 TTATAATTA-TTAAGAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT
*
75170483 TTCAAATTATATTTTATAGAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATAA
65 TTCAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA-T--TAA
* * *
75170548 TTATTAAGAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAA
127 TTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAA
*
75170612 TTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
192 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
75170664 TTAATAATTATTAAGAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT
1 TT-ATAATTATTAAGAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTAT
*
75170729 TTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTA
65 TTCAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTA
* *
75170794 TTAAGGATTTTATTAAATTATATA-TTTAATTAAAATATATTTAATAATAATTATGTT-AATTTA
130 TTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTA
75170857 TATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
195 TATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
* * * * *
75170906 -T-TGATTATTAAGGATTTTATTAAATTATATATTTTAA-TAATAATATATTTAATAATAATTAT
1 TTATAATTATTAAGAATTTTATTAAGTCATATATTTTAATTAA-AATATATTTAATATTAATTAT
* *
75170968 GTT-AATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATT
65 -TTCAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATT
* *
75171032 ATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
129 ATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAAT
75171096 ATGATTAAAT
Statistics
Matches: 405, Mismatches: 20, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
238 3 0.01
239 134 0.33
240 34 0.08
241 4 0.01
242 82 0.20
243 29 0.07
245 6 0.01
246 113 0.28
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (243 bp):
TTATAATTATTAAGAATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATT
TCAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTAT
TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTCAAATTAT
ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
Found at i:75171073 original size:16 final size:16
Alignment explanation
Indices: 75171052--75171093 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
75171042 TTATTAAATT
*
75171052 ATATATTTTAATTATA
1 ATATATTTTAATAATA
75171068 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
75171083 AT-TATGTTTAA
1 ATATAT-TTTAA
75171094 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:75171078 original size:15 final size:15
Alignment explanation
Indices: 75171043--75171084 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
75171033 TTAAGAATTT
*
75171043 TATTAAATTAT-ATA
1 TATTTAATTATAATA
75171057 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
75171071 TATTTAATAATAAT
1 TATTTAATTATAAT
75171085 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:75171090 original size:120 final size:120
Alignment explanation
Indices: 75170433--75171087 Score: 1030
Period size: 123 Copynumber: 5.4 Consensus size: 120
75170423 AATTATTTTA
* *
75170433 AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
*
75170498 ATAGAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA-T--TAATTATTAAG
* * *
75170556 AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
75170621 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA-T--TAATTATTAAG
* * *
75170679 AATTTTATTAAGTCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
75170744 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
75170799 GATTTTATTAAATTATATA-TTTAATTAAAATATATTTAATAATAATTATGTT-AATTTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATATTT
*
75170862 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
75170918 GATTTTATTAAATTATATATTTTAA-TAATAATATATTTAATAATAATTATGTT-AATTTATATT
1 AATTTTATTAAATCATATATTTTAATTAA-AATATATTTAATAATAATTAT-TTCAAATTATATT
*
75170981 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
64 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
75171038 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTAT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT
75171088 GTTTAAATAT
Statistics
Matches: 517, Mismatches: 11, Indels: 11
0.96 0.02 0.02
Matches are distributed among these distances:
119 115 0.22
120 170 0.33
121 2 0.00
122 1 0.00
123 229 0.44
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:75171263 original size:39 final size:40
Alignment explanation
Indices: 75171220--75171324 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 40
75171210 TTTCATTATG
75171220 CTATTACACCTCTATTCCATTCAACCAAACACA-AGA-ATA
1 CTATTACACCTCTATTCCATTCAACCAAACA-ATAGATATA
* * *
75171259 CTATTACGCCTCTATTCCATTACATTCAACCAAACAATTGATTTA
1 CTATTACACCTCTATT-C----CATTCAACCAAACAATAGATATA
75171304 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
75171325 ACACCTCTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
39 15 0.27
40 5 0.09
43 1 0.02
44 17 0.31
45 17 0.31
ACGTcount: A:0.34, C:0.30, G:0.03, T:0.33
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACAATAGATATA
Found at i:75171327 original size:16 final size:16
Alignment explanation
Indices: 75171306--75171343 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
75171296 TTGATTTACT
75171306 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
75171322 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
75171338 AATACA
1 ATTACA
75171344 GCCATTACGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:75172327 original size:9 final size:10
Alignment explanation
Indices: 75172303--75172329 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
75172293 TGACTTATTC
75172303 CTTTTTTCTT
1 CTTTTTTCTT
75172313 CTTTTTTCTT
1 CTTTTTTCTT
75172323 CTTTTTT
1 CTTTTTT
75172330 GATGGAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (10 bp):
CTTTTTTCTT
Found at i:75175082 original size:15 final size:16
Alignment explanation
Indices: 75175055--75175084 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75175045 TAAATTCATA
75175055 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
75175071 TAAGAA-ATTTATTA
1 TAAGAATATTTATTA
75175085 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:75175106 original size:119 final size:120
Alignment explanation
Indices: 75174894--75175189 Score: 558
Period size: 119 Copynumber: 2.5 Consensus size: 120
75174884 TTAATTAAAA
* *
75174894 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAATAAT
1 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAA
*
75174959 TTTATTAGATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATT
66 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATT
75175014 ATATTTTATAGTATCATATATTATGA-TTTAGTAAATTCATATAAGAATATTTATTATTAAGAAA
1 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAA
75175078 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATT
66 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATT
75175133 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTA
1 ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTA
75175190 AATTATATAT
Statistics
Matches: 172, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
119 116 0.67
120 56 0.33
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
ATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAAA
TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATT
Found at i:75175259 original size:102 final size:102
Alignment explanation
Indices: 75175071--75175408 Score: 453
Period size: 102 Copynumber: 3.1 Consensus size: 102
75175061 TATTTATTAT
75175071 TAAGAA-ATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTAT
1 TAAGAATATTTATTAAATTATATATTTTAATTAAAATATA-TT--TAATAATTATTTCAAATTAT
75175135 ATTTTATAGTATCATATATTATGATTTTAGTAAATTCATA
63 ATTTTATAGTATCATATATTATGATTTTAGTAAATTCATA
75175175 TAAGAATATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATTATATT
1 TAAGAATATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATTATATT
*
75175240 TTATAGTATCATTTATTATGATTTTAGTAAATTCATA
66 TTATAGTATCATATATTATGATTTTAGTAAATTCATA
* * * *
75175277 TAAGAATATTTATTATTATGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATT
1 TAAGAATA--T-TTATTA--AA--TTA-TATATT-T-TA-ATTAA--AATATAT-TTA-ATAATT
75175342 ATTTCAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATA
51 ATTTCAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATA
*
75175394 TAAAAATATTTATTA
1 TAAGAATATTTATTA
75175409 CTAATAATTT
Statistics
Matches: 211, Mismatches: 7, Indels: 22
0.88 0.03 0.09
Matches are distributed among these distances:
102 67 0.32
104 9 0.04
105 39 0.18
107 2 0.01
109 3 0.01
110 5 0.02
111 1 0.00
112 2 0.01
113 4 0.02
114 6 0.03
115 7 0.03
116 2 0.01
117 64 0.30
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (102 bp):
TAAGAATATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATTATATT
TTATAGTATCATATATTATGATTTTAGTAAATTCATA
Found at i:75175321 original size:117 final size:117
Alignment explanation
Indices: 75175178--75175573 Score: 697
Period size: 117 Copynumber: 3.4 Consensus size: 117
75175168 ATTCATATAA
75175178 GAATATTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATTATATTTTA
1 GAAT-TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATTATATTTTA
*
75175243 TAGTATCATTTATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAT
65 TAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAT
75175296 GAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATTATATTTTAT
1 GAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATTATATTTTAT
* *
75175361 AGTATCATATATTATGATTTTAGTAAATTCATATAAAAATATTTATTACTAAT
66 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTA-TTAT
*
75175414 -AATTTTATTAAATTATATATTTTAGTTAAAATATATTTAATAATTATTTCAAATTATATTTTAT
1 GAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATTATATTTTAT
* *
75175478 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTACTATTAA
66 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAT
*
75175530 GAATTTTATTAAATTATATATATTAATTAAAATA-ATTTAATAAT
1 GAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAT
75175574 AATTATGTTA
Statistics
Matches: 266, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
116 12 0.05
117 247 0.93
118 7 0.03
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (117 bp):
GAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATTATTTCAAATTATATTTTAT
AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAT
Found at i:75175326 original size:18 final size:17
Alignment explanation
Indices: 75175298--75175332 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
75175288 ATTATTATGA
*
75175298 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
75175315 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
75175333 TTAATAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:75175448 original size:18 final size:17
Alignment explanation
Indices: 75175415--75175449 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
75175405 ATTACTAATA
*
75175415 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
75175432 ATTTTAGTTAAAATATAT
1 ATTTTA-TTAAAATATAT
75175450 TTAATAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:75175449 original size:16 final size:15
Alignment explanation
Indices: 75175394--75175451 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 15
75175384 TAAATTCATA
75175394 TAAAA-ATA-TTTAT
1 TAAAATATATTTTAT
*
75175407 TACTAATA-ATTTTAT
1 TA-AAATATATTTTAT
75175422 TAAATTATATATTTTAGT
1 TAAA--ATATATTTTA-T
75175440 TAAAATATATTT
1 TAAAATATATTT
75175452 AATAATTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
13 2 0.06
14 4 0.11
15 8 0.22
16 11 0.31
17 6 0.17
18 5 0.14
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
TAAAATATATTTTAT
Found at i:75175791 original size:44 final size:46
Alignment explanation
Indices: 75175724--75175816 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 46
75175714 TTACACCTCT
* *
75175724 ATTCCATTCAACCAAACACAAGAA-TACC-ATTACGTCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
* *
75175768 ATTCCATTCAACTAAACAAAAGAATTACCTATTATGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
75175814 ATT
1 ATT
75175817 ACACCTCTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 22 0.51
45 4 0.09
46 17 0.40
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.31
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
Found at i:75175823 original size:16 final size:16
Alignment explanation
Indices: 75175804--75175835 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
75175794 ACCTATTATG
75175804 CCTCTATTCCATTACA
1 CCTCTATTCCATTACA
75175820 CCTCTATTCCATTACA
1 CCTCTATTCCATTACA
75175836 GCGAACCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38
Consensus pattern (16 bp):
CCTCTATTCCATTACA
Found at i:75185152 original size:17 final size:18
Alignment explanation
Indices: 75185119--75185152 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
75185109 ATGTTGTGCC
*
75185119 AAACTATTTTTGTGCTTG
1 AAACTATTTTGGTGCTTG
75185137 AAACTA-TTTGGTGCTT
1 AAACTATTTTGGTGCTT
75185153 ATCATTCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.47
Consensus pattern (18 bp):
AAACTATTTTGGTGCTTG
Found at i:75207811 original size:44 final size:44
Alignment explanation
Indices: 75207763--75208076 Score: 154
Period size: 44 Copynumber: 7.1 Consensus size: 44
75207753 ATAGCAGATA
* *
75207763 TTATCTCCTTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATC
* * * * * ** **
75207807 TTATCTTTCC-AAG-A-TAGTGGGAAGAAAATTTAAGCCACCAAGCC
1 TTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGACGGCAAATC
* * * * * * ** *
75207851 TTATCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGCAGATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATC
* * *
75207895 TTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGACGGCAAATA
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATC
* * * ** **
75207939 TTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCC
1 TTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTAAAGACGGCAAATC
* * * * * * * **
75207983 TGATCTCCCTGAGCAGCAATGGAGTAGGTTGAAGATTGCAAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATC
* * *
75208027 TTATCTCCCTAAGCAGTAGTGGAGCATATCAAAGACGGAAAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATC
75208071 TTATCT
1 TTATCT
75208077 TTCCAAGATA
Statistics
Matches: 184, Mismatches: 74, Indels: 24
0.65 0.26 0.09
Matches are distributed among these distances:
42 8 0.04
43 12 0.07
44 149 0.81
45 11 0.06
46 4 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (44 bp):
TTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATC
Found at i:75207989 original size:132 final size:132
Alignment explanation
Indices: 75207750--75208126 Score: 576
Period size: 132 Copynumber: 2.9 Consensus size: 132
75207740 CAGATCAGTA
* * *
75207750 AAGATAGCAGATATTATCTCCTTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTT
1 AAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTT
* * *
75207815 CCAAGATAGTGGGAAGAAAATTTAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGGT
66 CCAAGATAGTGGGAAGAAGATTTAAGCCACCAAGCCTGATCTCCCTGAGCAGCAACGGAGTAGGT
75207880 TG
131 TG
* *
75207882 AAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGACGGCAAATATTATCTTT
1 AAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTT
* *
75207947 CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTGATCTCCCTGAGCAGCAATGGAGTAGGT
66 CCAAGATAGTGGGAAGAAGATTTAAGCCACCAAGCCTGATCTCCCTGAGCAGCAACGGAGTAGGT
75208012 TG
131 TG
* * *
75208014 AAGATTGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCATATCAAAGACGGAAAATCTTATCTTT
1 AAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTT
* * ** *
75208079 CCAAGATAGTGGGAAGTAGGTTTAAGTTACCGAGCCCTG-TCTCCCTGA
66 CCAAGATAGTGGGAAGAAGATTTAAGCCACCAAG-CCTGATCTCCCTGA
75208127 TGTTGCAGTG
Statistics
Matches: 224, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 220 0.98
133 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (132 bp):
AAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTT
CCAAGATAGTGGGAAGAAGATTTAAGCCACCAAGCCTGATCTCCCTGAGCAGCAACGGAGTAGGT
TG
Found at i:75208469 original size:17 final size:18
Alignment explanation
Indices: 75208431--75208470 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
75208421 AATACAACGG
*
75208431 GCCCAAAACTCTAACCTA
1 GCCCAAAACTCCAACCTA
*
75208449 GCCCAAAAC-CCAACTTA
1 GCCCAAAACTCCAACCTA
75208466 GCCCA
1 GCCCA
75208471 GCAGATTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.38, C:0.42, G:0.07, T:0.12
Consensus pattern (18 bp):
GCCCAAAACTCCAACCTA
Found at i:75212505 original size:17 final size:16
Alignment explanation
Indices: 75212477--75212522 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
75212467 AAATCATCCC
75212477 TCATCC-CTCATCTCA
1 TCATCCTCTCATCTCA
75212492 TCATCCCTCTCATCTC-
1 TCAT-CCTCTCATCTCA
75212508 TCATCCTCTC-TCTCA
1 TCATCCTCTCATCTCA
75212523 ACTCTCATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 4 0.14
15 10 0.36
16 6 0.21
17 8 0.29
ACGTcount: A:0.15, C:0.48, G:0.00, T:0.37
Consensus pattern (16 bp):
TCATCCTCTCATCTCA
Found at i:75212509 original size:19 final size:19
Alignment explanation
Indices: 75212487--75212530 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
75212477 TCATCCCTCA
*
75212487 TCTCATCATCCCTCTCATC
1 TCTCATCATCCCTCTCAAC
* *
75212506 TCTCATCCTCTCTCTCAAC
1 TCTCATCATCCCTCTCAAC
75212525 TCTCAT
1 TCTCAT
75212531 AGCTCTCACG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.16, C:0.45, G:0.00, T:0.39
Consensus pattern (19 bp):
TCTCATCATCCCTCTCAAC
Found at i:75212510 original size:7 final size:7
Alignment explanation
Indices: 75212470--75212530 Score: 54
Period size: 7 Copynumber: 8.6 Consensus size: 7
75212460 ATTTTTTAAA
*
75212470 TCATCCC
1 TCATCTC
*
75212477 TCATCCC
1 TCATCTC
75212484 TCATCTC
1 TCATCTC
75212491 ATCATCCCTC
1 -TCAT--CTC
75212501 TCATCTC
1 TCATCTC
75212508 TCATC-C
1 TCATCTC
75212514 TC-TCTC
1 TCATCTC
*
75212520 TCAACTC
1 TCATCTC
75212527 TCAT
1 TCAT
75212531 AGCTCTCACG
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
5 2 0.04
6 6 0.13
7 27 0.59
8 4 0.09
9 4 0.09
10 3 0.07
ACGTcount: A:0.16, C:0.48, G:0.00, T:0.36
Consensus pattern (7 bp):
TCATCTC
Found at i:75229670 original size:43 final size:43
Alignment explanation
Indices: 75229599--75229697 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
75229589 ACAGGGGAGA
* * *
75229599 CACAGTCGTGTCGCATAGCCGTGTGTCACACAAGG-TAAAGACT
1 CACAGCCGTGTCGCATAGCAGTGCGTCACACAAGGCT-AAGACT
* *
75229642 CAC-GCCCGTGTCGCATGGCAGTGCGTCACACACGGCTAAGACT
1 CACAG-CCGTGTCGCATAGCAGTGCGTCACACAAGGCTAAGACT
75229685 CACAGCCGTGTCG
1 CACAGCCGTGTCG
75229698 TAGGCCAAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
42 1 0.02
43 45 0.94
44 2 0.04
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (43 bp):
CACAGCCGTGTCGCATAGCAGTGCGTCACACAAGGCTAAGACT
Found at i:75231748 original size:45 final size:45
Alignment explanation
Indices: 75231683--75232038 Score: 372
Period size: 45 Copynumber: 7.9 Consensus size: 45
75231673 TCATTTTTCG
* ** ** * * * *
75231683 TCGTGTTGCCATAGTGTCTTTCAACCATGGTCTTATTTGTTTGAT
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAA
* *
75231728 TCTTGATGCCATAACGTCTTTCAG-CTATGGTCTTACTCGATAGAA
1 TCGTGATGCCATAACGTCTTTCAGTC-ATGGTCTTACTCGTTAGAA
* * * * *
75231773 TCATGATGCCGTAACGTCTTTCAATCATGGTCTTACTCGATATAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAA
** * * * * * *
75231818 TTATGATGCCGTAACATCTTTCATTCATGGTGTTACTTGTTAAAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAA
* **
75231863 TCGTGATGGCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAA
* * *
75231908 TCGTGATGCCATAACGTCTTTCAGTCATGGTTTTACTTGATAGAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAA
* * *
75231953 TTGTGATGCCATAACATCTTTCAGTCATGGCCTTACTCGTTAGAA
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAA
* * *
75231998 TCGTGATGCCATGACTTCTTTCAGTCATGGTCTTTCTCGTT
1 TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTT
75232039 TTTGGTATGG
Statistics
Matches: 262, Mismatches: 47, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
44 1 0.00
45 260 0.99
46 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (45 bp):
TCGTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAA
Found at i:75231758 original size:91 final size:92
Alignment explanation
Indices: 75231593--75231761 Score: 209
Period size: 91 Copynumber: 1.8 Consensus size: 92
75231583 CAAATGATCG
* * **
75231593 GTGTGTGCCATTGTATCTTTCAAACATTGTCTTATTTATTCTCGTCTTGATGCCATAGTGTCTTC
1 GTGTGTGCCATAGTATCTTTCAAACATGGTCTTATTTATTCTCGTCTTGATGCCATAACGTCTTC
75231658 CAACCATGGTCTTCTTCATTTTTCGTC
66 CAACCATGGTCTTCTTCATTTTTCGTC
* * *
75231685 GTGT-TGCCATAGTGTCTTTCAACCATGGTCTTATTTGTT-T-GATTCTTGATGCCATAACGTCT
1 GTGTGTGCCATAGTATCTTTCAAACATGGTCTTATTTATTCTCG--TCTTGATGCCATAACGTCT
* * *
75231747 TTCAGCTATGGTCTT
64 TCCAACCATGGTCTT
75231762 ACTCGATAGA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
89 1 0.02
90 1 0.02
91 59 0.91
92 4 0.06
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (92 bp):
GTGTGTGCCATAGTATCTTTCAAACATGGTCTTATTTATTCTCGTCTTGATGCCATAACGTCTTC
CAACCATGGTCTTCTTCATTTTTCGTC
Found at i:75231882 original size:135 final size:135
Alignment explanation
Indices: 75231731--75232036 Score: 434
Period size: 135 Copynumber: 2.3 Consensus size: 135
75231721 GTTTGATTCT
*
75231731 TGATGCCATAACGTCTTTCAG-CTATGGTCTTACTCGATAGAATCATGATGCCGTAACGTCTTTC
1 TGATGCCATAACGTCTTTCAGTC-ATGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTC
* * * ** *
75231795 AATCATGGTCTTACTCGATATAATTATGATGCCGTAACATCTTTCATTCATGGTGTTACTTGTTA
65 AATCATGGTCTTACTCGATAGAATTATGATGCCATAACATCTTTCAGTCATGGCCTTACTCGTTA
75231860 AAATCG
130 AAATCG
* * *
75231866 TGATGGCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAATCGTGATGCCATAACGTCTTTCA
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCA
* * * * *
75231931 GTCATGGTTTTACTTGATAGAATTGTGATGCCATAACATCTTTCAGTCATGGCCTTACTCGTTAG
66 ATCATGGTCTTACTCGATAGAATTATGATGCCATAACATCTTTCAGTCATGGCCTTACTCGTTAA
75231996 AATCG
131 AATCG
* * *
75232001 TGATGCCATGACTTCTTTCAGTCATGGTCTTTCTCG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCG
75232037 TTTTTGGTAT
Statistics
Matches: 150, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
135 149 0.99
136 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (135 bp):
TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCATGATGCCATAACGTCTTTCA
ATCATGGTCTTACTCGATAGAATTATGATGCCATAACATCTTTCAGTCATGGCCTTACTCGTTAA
AATCG
Found at i:75236516 original size:27 final size:27
Alignment explanation
Indices: 75236486--75236660 Score: 172
Period size: 27 Copynumber: 6.4 Consensus size: 27
75236476 TTGAGCCCGT
* * * *
75236486 ACACTCAGTGCTATATAATCAACTCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* *
75236513 ACACTTAGTGCTACGTAATCAAATCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* **
75236540 ACACTTAGTGCCACATAGTCCATCTCGC
1 ACACTTAGTGCTACATAGT-CAAATCGC
** * *
75236568 ACACTTAGTGCCGCATGGTCAATTCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* **
75236595 ACACTTAGTGC-ATCATATTCATTTCGC
1 ACACTTAGTGCTA-CATAGTCAAATCGC
*
75236622 ACACTTAGTGCAACATAGTCAAATCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
75236649 ACACTTAGTGCT
1 ACACTTAGTGCT
75236661 GTACAATTTA
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
ACACTTAGTGCTACATAGTCAAATCGC
Found at i:75236623 original size:82 final size:81
Alignment explanation
Indices: 75236504--75236659 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
75236494 TGCTATATAA
* * **
75236504 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-CAAATCGCA
75236569 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75236586 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
75236650 CACTTAGTGC
65 CACTTAGTGC
75236660 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75236643 original size:54 final size:54
Alignment explanation
Indices: 75236508--75236659 Score: 198
Period size: 54 Copynumber: 2.8 Consensus size: 54
75236498 ATATAATCAA
* * *
75236508 CTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCAT
1 CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTG-CACATAGTCCAT
** * * *
75236563 CTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATA-TTCAT
1 CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCA-CATAGTCCAT
*
75236617 TTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
1 CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
75236660 TGTACAATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 44 0.52
55 40 0.48
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (54 bp):
CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCACATAGTCCAT
Found at i:75244699 original size:27 final size:27
Alignment explanation
Indices: 75244669--75244843 Score: 172
Period size: 27 Copynumber: 6.4 Consensus size: 27
75244659 TTGAGCCCGT
* * * *
75244669 ACACTCAGTGCTATATAATCAACTCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* *
75244696 ACACTTAGTGCTACGTAATCAAATCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* **
75244723 ACACTTAGTGCCACATAGTCCATCTCGC
1 ACACTTAGTGCTACATAGT-CAAATCGC
** * *
75244751 ACACTTAGTGCCGCATGGTCAATTCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* **
75244778 ACACTTAGTGC-ATCATATTCATTTCGC
1 ACACTTAGTGCTA-CATAGTCAAATCGC
*
75244805 ACACTTAGTGCAACATAGTCAAATCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
75244832 ACACTTAGTGCT
1 ACACTTAGTGCT
75244844 GTACAATTTA
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
ACACTTAGTGCTACATAGTCAAATCGC
Found at i:75244806 original size:82 final size:81
Alignment explanation
Indices: 75244687--75244842 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
75244677 TGCTATATAA
* * **
75244687 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-CAAATCGCA
75244752 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75244769 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
75244833 CACTTAGTGC
65 CACTTAGTGC
75244843 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75244826 original size:54 final size:54
Alignment explanation
Indices: 75244691--75244842 Score: 198
Period size: 54 Copynumber: 2.8 Consensus size: 54
75244681 ATATAATCAA
* * *
75244691 CTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCCAT
1 CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTG-CACATAGTCCAT
** * * *
75244746 CTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATA-TTCAT
1 CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCA-CATAGTCCAT
*
75244800 TTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
1 CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGC
75244843 TGTACAATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 44 0.52
55 40 0.48
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (54 bp):
CTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCACATAGTCCAT
Found at i:75248976 original size:45 final size:45
Alignment explanation
Indices: 75248903--75249207 Score: 416
Period size: 45 Copynumber: 6.8 Consensus size: 45
75248893 GTTTGATTCC
* * * *
75248903 TGATACCATAGCGTGTTTCAG-CTATGGTCTTGCTCGATAGAATCG
1 TGATGCCATAACGTCTTTCAGTC-ATGGTCTTACTCGATAGAATCG
** * * *
75248948 CCATGCCATAACGTTTTTCAATCGTGGTCTTACTCGATAGAATCG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCG
* * *
75248993 TGATGCCATAACGTCTTTCACTCATGGTCTTACTCGTTAGAATTG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCG
*
75249038 TGGTGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCG
*
75249083 TGATGCCATAATGTCTTTCAGTCATGGTCTTACTCGATAGAATCG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCG
* *
75249128 TGATGCCATAATGTATTTCAGTCATGGTCTTACTCGATAGAATCG
1 TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCG
* *
75249173 TTATGCCATAACTTC-TTCTAGTCATGGTCTTACTC
1 TGATGCCATAACGTCTTTC-AGTCATGGTCTTACTC
75249208 ATTTCTAGTA
Statistics
Matches: 232, Mismatches: 26, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
44 3 0.01
45 228 0.98
46 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (45 bp):
TGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCG
Found at i:75249249 original size:90 final size:88
Alignment explanation
Indices: 75248951--75249237 Score: 314
Period size: 90 Copynumber: 3.2 Consensus size: 88
75248941 AGAATCGCCA
* * * * * *
75248951 TGCCATAACGTTTTTCAATCGTGGTCTTACTCGATAGAATCGTGATGCCATAACGTCTTTCACTC
1 TGCCATAATGTCTTTCAGTCATGGTCTTACTCGATAGAATCGTGATGCCATAACTTCTTTCAGTC
* *
75249016 ATGGTCTTACTC-GTTAGAATTGTGG
66 ATGGTCTTACTCATTTAG---TATGG
*
75249041 TGCCATAACGTCTTTCAGTCATGGTCTTACTCGATAGAATCGTGATGCCATAA-TGTCTTTCAGT
1 TGCCATAATGTCTTTCAGTCATGGTCTTACTCGATAGAATCGTGATGCCATAACT-TCTTTCAGT
*
75249105 CATGGTCTTACTCGA--TAGAATCGTG
65 CATGGTCTTACTC-ATTTAGTAT-G-G
* *
75249130 ATGCCATAATGTATTTCAGTCATGGTCTTACTCGATAGAATCGTTATGCCATAACTTC-TTCTAG
1 -TGCCATAATGTCTTTCAGTCATGGTCTTACTCGATAGAATCGTGATGCCATAACTTCTTTC-AG
75249194 TCATGGTCTTACTCATTTCTAGTATGG
64 TCATGGTCTTACTCA-TT-TAGTATGG
* *
75249221 TGTCATAGTGTCTTTCA
1 TGCCATAATGTCTTTCA
75249238 ACTATTGTCT
Statistics
Matches: 171, Mismatches: 14, Indels: 24
0.82 0.07 0.11
Matches are distributed among these distances:
87 1 0.01
88 1 0.01
89 5 0.03
90 156 0.91
91 2 0.01
92 1 0.01
93 5 0.03
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (88 bp):
TGCCATAATGTCTTTCAGTCATGGTCTTACTCGATAGAATCGTGATGCCATAACTTCTTTCAGTC
ATGGTCTTACTCATTTAGTATGG
Found at i:75250030 original size:80 final size:80
Alignment explanation
Indices: 75249897--75250060 Score: 301
Period size: 80 Copynumber: 2.0 Consensus size: 80
75249887 GTGCTAGTTG
* * *
75249897 GACCAAGTTGCAATGATTTGAAAGACATAAAATTTACTAGAAATAAACTCAAAAAGAATACCATG
1 GACCAAGTTGCAACGATTTCAAAAACATAAAATTTACTAGAAATAAACTCAAAAAGAATACCATG
75249962 CATGCTCCAAAAGAA
66 CATGCTCCAAAAGAA
75249977 GACCAAGTTGCAACGATTTCAAAAACATAAAATTTACTAGAAATAAACTCAAAAAGAATACCATG
1 GACCAAGTTGCAACGATTTCAAAAACATAAAATTTACTAGAAATAAACTCAAAAAGAATACCATG
75250042 CATGCTCCAAAAGAA
66 CATGCTCCAAAAGAA
75250057 GACC
1 GACC
75250061 GAATGCTCAA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.49, C:0.18, G:0.13, T:0.20
Consensus pattern (80 bp):
GACCAAGTTGCAACGATTTCAAAAACATAAAATTTACTAGAAATAAACTCAAAAAGAATACCATG
CATGCTCCAAAAGAA
Found at i:75259583 original size:22 final size:22
Alignment explanation
Indices: 75259555--75259600 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
75259545 ACCGATAGAG
75259555 TTAGAAAGAATTCATAATGTGT
1 TTAGAAAGAATTCATAATGTGT
75259577 TTAGAAAGAATTCATAATGTGT
1 TTAGAAAGAATTCATAATGTGT
75259599 TT
1 TT
75259601 CATGTATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.39
Consensus pattern (22 bp):
TTAGAAAGAATTCATAATGTGT
Found at i:75266498 original size:45 final size:43
Alignment explanation
Indices: 75266404--75266603 Score: 168
Period size: 45 Copynumber: 4.5 Consensus size: 43
75266394 TTGGAAATAT
* * ** **
75266404 AGGTGGATGCTATGTGCTGATTCCACCCGATATTAATGAAAATAA
1 AGGTGGTTGCTATGTGCTGATTTCA-CCGATACCAATG-GTATAA
* *
75266449 AGGTGGTTGCTATGTGCTGATTTCACCGAAAACCAATGGTTATAT
1 AGGTGGTTGCTATGTGCTGATTTCACCG-ATACCAATGG-TATAA
* * *
75266494 AGGTGGTTGCTATGTGCTGATTTTACCTGGTACCATTGAGTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACC-GATACCAATG-GTATAA
* * * *
75266539 AGCTGGTTGCTATGTGCTGATTTCACCGAGTACTATTGACTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCGA-TACCAATG-GTATAA
* *
75266584 GGGTGG-TGCTGTGTGCTGAT
1 AGGTGGTTGCTATGTGCTGAT
75266604 CCGTCGTGTA
Statistics
Matches: 129, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
44 17 0.13
45 110 0.85
46 2 0.02
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (43 bp):
AGGTGGTTGCTATGTGCTGATTTCACCGATACCAATGGTATAA
Found at i:75266553 original size:90 final size:90
Alignment explanation
Indices: 75266400--75266567 Score: 237
Period size: 90 Copynumber: 1.9 Consensus size: 90
75266390 ATCGTTGGAA
** *
75266400 ATATAGGTGGATGCTATGTGCTGATTCCACCCGATATTAATGAAAATAAAGGTGGTTGCTATGTG
1 ATATAGGTGGATGCTATGTGCTGATTCCACCCGATACCAATGAAAATAAAGCTGGTTGCTATGTG
75266465 CTGATTTCACCGAAAACCAATGGTT
66 CTGATTTCACCGAAAACCAATGGTT
* ** * * * **
75266490 ATATAGGTGGTTGCTATGTGCTGATTTTACCTGGTACCATTGAGTATAAAGCTGGTTGCTATGTG
1 ATATAGGTGGATGCTATGTGCTGATTCCACCCGATACCAATGAAAATAAAGCTGGTTGCTATGTG
75266555 CTGATTTCACCGA
66 CTGATTTCACCGA
75266568 GTACTATTGA
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
90 67 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (90 bp):
ATATAGGTGGATGCTATGTGCTGATTCCACCCGATACCAATGAAAATAAAGCTGGTTGCTATGTG
CTGATTTCACCGAAAACCAATGGTT
Found at i:75270956 original size:30 final size:30
Alignment explanation
Indices: 75270922--75270995 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 30
75270912 ATAGCTGAGG
75270922 CTATCCCTTTTCATAATTTGATAACCGAAA
1 CTATCCCTTTTCATAATTTGATAACCGAAA
** *
75270952 CTATCCCTTTTCATAATTTGATAGTCGAAG
1 CTATCCCTTTTCATAATTTGATAACCGAAA
*
75270982 CCATCCCTTTTCAT
1 CTATCCCTTTTCAT
75270996 GATCGATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.27, C:0.26, G:0.08, T:0.39
Consensus pattern (30 bp):
CTATCCCTTTTCATAATTTGATAACCGAAA
Found at i:75271012 original size:29 final size:29
Alignment explanation
Indices: 75270893--75271140 Score: 153
Period size: 29 Copynumber: 8.4 Consensus size: 29
75270883 ATGCTTGACA
* * *
75270893 CATCCCTTTTCTTTATTCGATAG-CTGAGGC
1 CATCCCTTTTC-ATAATCGATAGTC-GAAGC
* * ** *
75270923 TATCCCTTTTCATAATTTGATAACCGAAAC
1 CATCCCTTTTCATAA-TCGATAGTCGAAGC
* *
75270953 TATCCCTTTTCATAATTTGATAGTCGAAGC
1 CATCCCTTTTCATAA-TCGATAGTCGAAGC
* *
75270983 CATCCCTTTTCATGATCGATAATCGAAGC
1 CATCCCTTTTCATAATCGATAGTCGAAGC
* * * *
75271012 CACCCCTTTTCATAGTTCGATGGTCGTCA-C
1 CATCCCTTTTCATA-ATCGATAGTCG-AAGC
* * * * *
75271042 CATCCCCTTCCATAATTGATGGTCGTCA-C
1 CATCCCTTTTCATAATCGATAGTCG-AAGC
*
75271071 CATCCCTTTTCATAATCGATAGTTGAAGC
1 CATCCCTTTTCATAATCGATAGTCGAAGC
* * *
75271100 TATCCCTTTTCA-AGTTCGATAGCCGAAGC
1 CATCCCTTTTCATA-ATCGATAGTCGAAGC
* *
75271129 TATCCCATTTCA
1 CATCCCTTTTCA
75271141 CCCGTCAATG
Statistics
Matches: 176, Mismatches: 36, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.01
29 94 0.53
30 78 0.44
31 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.35
Consensus pattern (29 bp):
CATCCCTTTTCATAATCGATAGTCGAAGC
Found at i:75271045 original size:59 final size:60
Alignment explanation
Indices: 75270896--75271126 Score: 168
Period size: 59 Copynumber: 3.9 Consensus size: 60
75270886 CTTGACACAT
* * * * * * *
75270896 CCCTTTTCTTTATTCGATAG-CTGAGGCTATCCCTTTTCATAATTTGATAACCGAAACTAT
1 CCCTTTTCATAATTCGATAGTC-GAAGCCATCCCTTTTCATAATTCGATAACCGAAACCAC
* * * *
75270956 CCCTTTTCATAATTTGATAGTCGAAGCCATCCCTTTTCATGA-TCGATAATCGAAGCCAC
1 CCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTTCATAATTCGATAACCGAAACCAC
* * * * * *** ** *
75271015 CCCTTTTCATAGTTCGATGGTCGTCA-CCATCCCCTTCCATAATT-GATGGTCGTCACCAT
1 CCCTTTTCATAATTCGATAGTCG-AAGCCATCCCTTTTCATAATTCGATAACCGAAACCAC
* * * *
75271074 CCCTTTTCATAA-TCGATAGTTGAAGCTATCCCTTTTCA-AGTTCGATAGCCGAA
1 CCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTTCATAATTCGATAACCGAA
75271127 GCTATCCCAT
Statistics
Matches: 130, Mismatches: 36, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
57 4 0.03
58 24 0.18
59 65 0.50
60 36 0.28
61 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (60 bp):
CCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTTCATAATTCGATAACCGAAACCAC
Found at i:75277667 original size:20 final size:20
Alignment explanation
Indices: 75277642--75277680 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
75277632 TACTTTCATT
75277642 TTTACTTACTCT-CTTACTTC
1 TTTACTTACT-TGCTTACTTC
75277662 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
75277681 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.26, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTC
Found at i:75281446 original size:89 final size:90
Alignment explanation
Indices: 75281283--75281511 Score: 239
Period size: 89 Copynumber: 2.6 Consensus size: 90
75281273 ATACGATGGT
* * ** * *
75281283 TCACACATCCCTTTTCTTTATTCGATAGCCGAGGCTATCCCTTTTCATATTTTGATAGCCAAAAC
1 TCAC-CATCCCTTTTCATTATTCGATGGCCGTCGCCATCCCTTTTCATAATTTGATAGCCAAAAC
* *
75281348 TATCTCTTTTAAAAATTTGATGGT-G
65 CATCCCTTTTAAAAATTTGATGGTCG
* * * *
75281373 ATCACCATCCCTTTTCATTGTTCGATGGGCGTCGCCATCCC-TTTCATAATTTGCTAGCCAAAGC
1 -TCACCATCCCTTTTCATTATTCGATGGCCGTCGCCATCCCTTTTCATAATTTGATAGCCAAAAC
* * *
75281437 CATCCCTTTTCATAGTTTGATGGTCG
65 CATCCCTTTTAAAAATTTGATGGTCG
* * * * *
75281463 TCACCATCCCTTTCCATAATT-GATGGTCGTCACCTTCCCTTTTCATAAT
1 TCACCATCCCTTTTCATTATTCGATGGCCGTCGCCATCCCTTTTCATAAT
75281512 CGATAGTCGA
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
88 15 0.13
89 66 0.57
90 30 0.26
91 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (90 bp):
TCACCATCCCTTTTCATTATTCGATGGCCGTCGCCATCCCTTTTCATAATTTGATAGCCAAAACC
ATCCCTTTTAAAAATTTGATGGTCG
Found at i:75281470 original size:30 final size:30
Alignment explanation
Indices: 75281363--75281509 Score: 131
Period size: 29 Copynumber: 5.0 Consensus size: 30
75281353 CTTTTAAAAA
*
75281363 TTTGATGGT-GATCACCATCCCTTTTCATTG
1 TTTGATGGTCG-TCACCATCCCTTTTCATAG
* * * *
75281393 TTCGATGGGCGTCGCCATCCC-TTTCATAA
1 TTTGATGGTCGTCACCATCCCTTTTCATAG
* * ***
75281422 TTTGCTAG-CCAAAGCCATCCCTTTTCATAG
1 TTTGATGGTCGTCA-CCATCCCTTTTCATAG
*
75281452 TTTGATGGTCGTCACCATCCCTTTCCATA-
1 TTTGATGGTCGTCACCATCCCTTTTCATAG
* *
75281481 ATTGATGGTCGTCACCTTCCCTTTTCATA
1 TTTGATGGTCGTCACCATCCCTTTTCATA
75281510 ATCGATAGTC
Statistics
Matches: 91, Mismatches: 22, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
28 1 0.01
29 44 0.48
30 43 0.47
31 3 0.03
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTGATGGTCGTCACCATCCCTTTTCATAG
Found at i:75281502 original size:59 final size:57
Alignment explanation
Indices: 75281364--75281509 Score: 152
Period size: 59 Copynumber: 2.5 Consensus size: 57
75281354 TTTTAAAAAT
* *
75281364 TTGATGGTGATCACCATCCCTTTTCATTGTTCGATGGGCGTCGCCATCCCTTTCATAA
1 TTGATGGTG-TCACCATCCCTTTTCATAGTTCGATGGGCGTCACCATCCCTTTCATAA
* * * *
75281422 TT--TGCTAGCCAAAGCCATCCCTTTTCATAGTTTGATGGTCGTCACCATCCCTTTCCATAA
1 TTGATGGT-GTC--A-CCATCCCTTTTCATAGTTCGATGGGCGTCACCATCCCTTT-CATAA
*
75281482 TTGATGGTCGTCACCTTCCCTTTTCATA
1 TTGATGGT-GTCACCATCCCTTTTCATA
75281510 ATCGATAGTC
Statistics
Matches: 71, Mismatches: 10, Indels: 13
0.76 0.11 0.14
Matches are distributed among these distances:
56 4 0.06
57 1 0.01
58 3 0.04
59 50 0.70
60 8 0.11
62 5 0.07
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.37
Consensus pattern (57 bp):
TTGATGGTGTCACCATCCCTTTTCATAGTTCGATGGGCGTCACCATCCCTTTCATAA
Found at i:75287488 original size:26 final size:26
Alignment explanation
Indices: 75287455--75287518 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 26
75287445 ACAAATATTT
75287455 CCACAAAGGCTTCCTTTCAGAGATAG
1 CCACAAAGGCTTCCTTTCAGAGATAG
* *
75287481 CCACAAAGGCTTTCTTTTAGAGATAG
1 CCACAAAGGCTTCCTTTCAGAGATAG
75287507 CCACAAAAGGCT
1 CCAC-AAAGGCT
75287519 CACTTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 28 0.80
27 7 0.20
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (26 bp):
CCACAAAGGCTTCCTTTCAGAGATAG
Found at i:75287524 original size:27 final size:25
Alignment explanation
Indices: 75287455--75287526 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 25
75287445 ACAAATATTT
*
75287455 CCACAAAGGCTTCCTTTCAGAGATAG
1 CCACAAAGGC-TCCTTTTAGAGATAG
*
75287481 CCACAAAGGCTTTCTTTTAGAGATAG
1 CCACAAAGGC-TCCTTTTAGAGATAG
75287507 CCACAAAAGGCTCACTTTTA
1 CCAC-AAAGGCTC-CTTTTA
75287527 AAGAAATTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
26 29 0.71
27 12 0.29
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (25 bp):
CCACAAAGGCTCCTTTTAGAGATAG
Found at i:75288446 original size:128 final size:128
Alignment explanation
Indices: 75288218--75288474 Score: 514
Period size: 128 Copynumber: 2.0 Consensus size: 128
75288208 TTTTAGTTGA
75288218 AGTTTTAGAATTTGATTTACATTCAATAAAAAGTGTAATTTGAGTCTTTTATTGACCTTAGAGGC
1 AGTTTTAGAATTTGATTTACATTCAATAAAAAGTGTAATTTGAGTCTTTTATTGACCTTAGAGGC
75288283 CGAATGAGGCCTAAGGGTTAGCTAATATACTTTGTGAGTGTGCAAGAGACCATTAGAGGGTGT
66 CGAATGAGGCCTAAGGGTTAGCTAATATACTTTGTGAGTGTGCAAGAGACCATTAGAGGGTGT
75288346 AGTTTTAGAATTTGATTTACATTCAATAAAAAGTGTAATTTGAGTCTTTTATTGACCTTAGAGGC
1 AGTTTTAGAATTTGATTTACATTCAATAAAAAGTGTAATTTGAGTCTTTTATTGACCTTAGAGGC
75288411 CGAATGAGGCCTAAGGGTTAGCTAATATACTTTGTGAGTGTGCAAGAGACCATTAGAGGGTGT
66 CGAATGAGGCCTAAGGGTTAGCTAATATACTTTGTGAGTGTGCAAGAGACCATTAGAGGGTGT
75288474 A
1 A
75288475 ACAACTCAAT
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
128 129 1.00
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (128 bp):
AGTTTTAGAATTTGATTTACATTCAATAAAAAGTGTAATTTGAGTCTTTTATTGACCTTAGAGGC
CGAATGAGGCCTAAGGGTTAGCTAATATACTTTGTGAGTGTGCAAGAGACCATTAGAGGGTGT
Found at i:75308420 original size:8 final size:9
Alignment explanation
Indices: 75308406--75308434 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
75308396 AATTTTTTTG
75308406 AATTTTTAA
1 AATTTTTAA
75308415 AATTTTTAA
1 AATTTTTAA
75308424 AATTTTTAA
1 AATTTTTAA
75308433 AA
1 AA
75308435 AATAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
AATTTTTAA
Found at i:75313484 original size:22 final size:23
Alignment explanation
Indices: 75313441--75313486 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
75313431 TTTTAGGTCT
*
75313441 TTAGGAATTTATTTCTTTCATAA
1 TTAGGAATTTATTTCTTGCATAA
75313464 TTAGG-ATTTAATTTC-TGCATAA
1 TTAGGAATTT-ATTTCTTGCATAA
75313486 T
1 T
75313487 AAAACATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (23 bp):
TTAGGAATTTATTTCTTGCATAA
Found at i:75315864 original size:20 final size:20
Alignment explanation
Indices: 75315839--75315877 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
75315829 TACTTTCCTC
75315839 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
75315859 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
75315878 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:75316203 original size:50 final size:50
Alignment explanation
Indices: 75316078--75316369 Score: 268
Period size: 50 Copynumber: 5.7 Consensus size: 50
75316068 GATAATACCA
* * * ** * * *
75316078 TGCCAAAGCCATATCCCAGACATGGTCTTACATGAGATGTTTCCTAT-AT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
* * * * **
75316127 TACCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATC-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
* ** *
75316176 ATGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAG
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
* *
75316227 TGCCAATGCCATGTCCCAGGA-ATGGTCTTACGTGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCA-GACATGGTCTTACATGGGACCTCTCATATCAG
* *
75316277 TGCCAATGCCATGTCCCAGGA-ATGGTCTTACGTGGGACCTCTCATAGCCCCAATG
1 TGCCAATGCCATGTCCCA-GACATGGTCTTACATGGGACCTCTCATA---TC-A-G
*
75316332 ATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
75316370 TCTCATTCCC
Statistics
Matches: 206, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
49 38 0.18
50 128 0.62
51 3 0.01
53 1 0.00
54 1 0.00
55 3 0.01
56 32 0.16
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
Found at i:75325794 original size:20 final size:20
Alignment explanation
Indices: 75325757--75325796 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75325747 GTAAAATGCT
* *
75325757 TTGAAAAAAAGCATATGTAC
1 TTGAAAAAAAACAGATGTAC
*
75325777 TTGAAAAAAAATAGATGTAC
1 TTGAAAAAAAACAGATGTAC
75325797 AAAGGAGCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.07, G:0.15, T:0.25
Consensus pattern (20 bp):
TTGAAAAAAAACAGATGTAC
Found at i:75326398 original size:18 final size:18
Alignment explanation
Indices: 75326372--75326407 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
75326362 ATAAAAATAT
*
75326372 TTTTGAAAAAATAATTAA
1 TTTTAAAAAAATAATTAA
75326390 TTTTAAAAAAATAATTAA
1 TTTTAAAAAAATAATTAA
75326408 AGTGCACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
TTTTAAAAAAATAATTAA
Found at i:75328566 original size:14 final size:14
Alignment explanation
Indices: 75328538--75328566 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
75328528 GCTTAGTGGC
75328538 TTTTGACTTGATTT
1 TTTTGACTTGATTT
75328552 TTTTG-CTTGATTT
1 TTTTGACTTGATTT
75328565 TT
1 TT
75328567 AAGCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (14 bp):
TTTTGACTTGATTT
Found at i:75330811 original size:75 final size:75
Alignment explanation
Indices: 75330683--75330844 Score: 195
Period size: 75 Copynumber: 2.2 Consensus size: 75
75330673 TTAAATATGA
* * ** *
75330683 AAAACACATAATGCAAGTCTTAAAGGATGCTAATGTATTAATGTAAAGCATTAACTAAAAATGCA
1 AAAACACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATGCAAAAAATTAAATAAAAATGCA
*
75330748 TTCAATAAAC
66 TTCAACAAAC
* *
75330758 AAGAA-ACATAATGCACA-TTTTAAAAGATG-TAGATGTATTAATGCAAAAAATTAAATAAAGAT
1 AA-AACACATAATGCA-AGTCTTAAAAGATGCTA-ATGTATTAATGCAAAAAATTAAATAAAAAT
*
75330820 GCATTTAACAAAC
63 GCATTCAACAAAC
75330833 AAAACACATAAT
1 AAAACACATAAT
75330845 TAAAATTTGA
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
74 4 0.05
75 67 0.91
76 3 0.04
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26
Consensus pattern (75 bp):
AAAACACATAATGCAAGTCTTAAAAGATGCTAATGTATTAATGCAAAAAATTAAATAAAAATGCA
TTCAACAAAC
Found at i:75331548 original size:22 final size:23
Alignment explanation
Indices: 75331523--75331565 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
75331513 ATAATCTCAT
75331523 TAAA-AGGTAA-AGGCATTAAATC
1 TAAAGAGGTAAGAGG-ATTAAATC
*
75331545 TAAAGATGTAAGAGGATTAAA
1 TAAAGAGGTAAGAGGATTAAA
75331566 ACCATATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 11 0.61
24 3 0.17
ACGTcount: A:0.51, C:0.05, G:0.21, T:0.23
Consensus pattern (23 bp):
TAAAGAGGTAAGAGGATTAAATC
Found at i:75333365 original size:35 final size:35
Alignment explanation
Indices: 75333319--75333388 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
75333309 AATCGGTAAG
*
75333319 AGAAAGAGAAAACAAAAAGGAAGAAATCAGTCACT
1 AGAAAGAGAAAACAAAAAGGAACAAATCAGTCACT
* * *
75333354 AGAAAGGGAAAACAGAAAGGAACAATTCAGTCACT
1 AGAAAGAGAAAACAAAAAGGAACAAATCAGTCACT
75333389 GACGGTGGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.56, C:0.13, G:0.21, T:0.10
Consensus pattern (35 bp):
AGAAAGAGAAAACAAAAAGGAACAAATCAGTCACT
Found at i:75342615 original size:41 final size:41
Alignment explanation
Indices: 75342556--75342804 Score: 309
Period size: 41 Copynumber: 6.1 Consensus size: 41
75342546 ACAAAAATAC
*
75342556 ATTCAGGGGTATCGAAGTACAAATAGGGGCACGTATGTGCA
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCA
* * * * * * *
75342597 ATTCAAGGGTGCCTAAGTACAAACAAGGGTACTTATGTGCA
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCA
*
75342638 ATTCAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCA
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCA
* * * * * * *
75342679 ATTCAAGGGTGCCTAAGTACAAACAAGGGTACTTATGTGCA
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCA
*
75342720 ATTCAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCA
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCA
* * * *
75342761 ATTCAGGGGTATCAAAGTATAAATAGGGGCACATATGTGCA
1 ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCA
75342802 ATT
1 ATT
75342805 TAGGAATAAT
Statistics
Matches: 171, Mismatches: 37, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 171 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.23
Consensus pattern (41 bp):
ATTCAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCA
Found at i:75342645 original size:20 final size:20
Alignment explanation
Indices: 75342589--75342768 Score: 62
Period size: 20 Copynumber: 8.8 Consensus size: 20
75342579 TAGGGGCACG
*
75342589 TATGTGCAATTCAAGGGTGCC
1 TATGTGCAATTC-AGGGTACC
* * * *
75342610 TAAGTACAA-ACAAGGGTACT
1 TATGTGCAATTC-AGGGTACC
75342630 TATGTGCAATTCAGGGGTACC
1 TATGTGCAATTCA-GGGTACC
* * * * * *
75342651 GAAGTACAAGT-AGGGGCACG
1 TATGTGCAATTCA-GGGTACC
*
75342671 TATGTGCAATTCAAGGGTGCC
1 TATGTGCAATTC-AGGGTACC
* * * *
75342692 TAAGTACAA-ACAAGGGTACT
1 TATGTGCAATTC-AGGGTACC
75342712 TATGTGCAATTCAGGGGTACC
1 TATGTGCAATTCA-GGGTACC
* * * * * *
75342733 GAAGTACAAGT-AGGGGCACG
1 TATGTGCAATTCA-GGGTACC
75342753 TATGTGCAATTCAGGG
1 TATGTGCAATTCAGGG
75342769 GTATCAAAGT
Statistics
Matches: 111, Mismatches: 41, Indels: 15
0.66 0.25 0.09
Matches are distributed among these distances:
20 63 0.57
21 47 0.42
22 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (20 bp):
TATGTGCAATTCAGGGTACC
Found at i:75342804 original size:82 final size:82
Alignment explanation
Indices: 75342556--75342770 Score: 403
Period size: 82 Copynumber: 2.6 Consensus size: 82
75342546 ACAAAAATAC
* *
75342556 ATTCAGGGGTATCGAAGTACAAATAGGGGCACGTATGTGCAATTCAAGGGTGCCTAAGTACAAAC
1 ATTCAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAATTCAAGGGTGCCTAAGTACAAAC
75342621 AAGGGTACTTATGTGCA
66 AAGGGTACTTATGTGCA
75342638 ATTCAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAATTCAAGGGTGCCTAAGTACAAAC
1 ATTCAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAATTCAAGGGTGCCTAAGTACAAAC
75342703 AAGGGTACTTATGTGCA
66 AAGGGTACTTATGTGCA
*
75342720 ATTCAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAATTCAGGGGT
1 ATTCAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAATTCAAGGGT
75342771 ATCAAAGTAT
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 130 1.00
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.22
Consensus pattern (82 bp):
ATTCAGGGGTACCGAAGTACAAGTAGGGGCACGTATGTGCAATTCAAGGGTGCCTAAGTACAAAC
AAGGGTACTTATGTGCA
Found at i:75350109 original size:50 final size:50
Alignment explanation
Indices: 75350045--75350234 Score: 191
Period size: 50 Copynumber: 3.7 Consensus size: 50
75350035 TCTGTACTGT
* * * * **
75350045 CAATGCCATATCCCAGATATGGTCTTCCATGGGAGTTCTCATATCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGGTGC
* * *
75350095 CCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGGTGC
** * *
75350145 CAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATAATCTCAATGATTC
1 CAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAT-A--TC---GGTGC
* *
75350201 CAATGCCATGTCCCATACATGGTCTTACATGGGA
1 CAATGCCATGTCCCAGACATGGTCTTACAGGGGA
75350235 TCTCATTCCC
Statistics
Matches: 116, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 79 0.68
53 2 0.02
56 35 0.30
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
CAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATCGGTGC
Found at i:75357769 original size:50 final size:50
Alignment explanation
Indices: 75357647--75357771 Score: 153
Period size: 50 Copynumber: 2.5 Consensus size: 50
75357637 TATCCCATAT
* * *
75357647 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCAAGAC
1 ATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCCATGTCCAAGAC
* ** *
75357697 ATGGCCTTACGGGGGACTTCTCATCTCGGTGCCAACGCCATGTTCC-AGAC
1 ATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCCATG-TCCAAGAC
* *
75357747 ATGGTCTTACATAGGACCTCTCATA
1 ATGGTCTTACATGGGACTTCTCATA
75357772 ATCTCAATGA
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 58 0.95
51 3 0.05
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (50 bp):
ATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCCATGTCCAAGAC
Found at i:75359343 original size:20 final size:21
Alignment explanation
Indices: 75359293--75359351 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 21
75359283 AAGCTAGGGA
* *
75359293 ACGTATGTGCAATTCAGGGGT
1 ACGTATGTGCAAATCAGGGGC
*
75359314 ATCG-AAGTGCAAAT-AGGGGC
1 A-CGTATGTGCAAATCAGGGGC
*
75359334 ACGTATGTGCAATTCAGG
1 ACGTATGTGCAAATCAGG
75359352 AATAATCTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 2 0.07
20 14 0.47
21 12 0.40
22 2 0.07
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (21 bp):
ACGTATGTGCAAATCAGGGGC
Found at i:75359348 original size:41 final size:41
Alignment explanation
Indices: 75359182--75359351 Score: 193
Period size: 41 Copynumber: 4.2 Consensus size: 41
75359172 ACAAAAATAC
*
75359182 ATTCA-GGGTACCGAAGTACAAACAGGGGTA-GTTATGTGCA
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACG-TATGTGCA
* * * *
75359222 ATTTAGGGGTACCGAAGTACAAGCAGGGGCACTTATGTGTA
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
* * * *
75359263 ATTTAGGGGTATCGAAGTACAAGCTA-GGGAACGTATGTGCA
1 ATTCAGGGGTACCGAAGTACAAAC-AGGGGCACGTATGTGCA
* * *
75359304 ATTCAGGGGTATCGAAGTGCAAATAGGGGCACGTATGTGCA
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
75359345 ATTCAGG
1 ATTCAGG
75359352 AATAATCTTC
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
40 5 0.04
41 106 0.95
42 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.32, T:0.24
Consensus pattern (41 bp):
ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCA
Found at i:75361854 original size:22 final size:22
Alignment explanation
Indices: 75361826--75361877 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
75361816 ATGAGGAAGA
* *
75361826 TATGTGG-CAGTTTATCTGTAAT
1 TATGTGGTC-GTTTATCGGCAAT
75361848 TATGTGGTCGTTTATCGGCAAT
1 TATGTGGTCGTTTATCGGCAAT
75361870 TATGTGGT
1 TATGTGGT
75361878 GGCTTGACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (22 bp):
TATGTGGTCGTTTATCGGCAAT
Found at i:75364564 original size:101 final size:102
Alignment explanation
Indices: 75364436--75364619 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 102
75364426 AAGTGATGGC
* * *
75364436 CACGTGTGTAGTACTATGTGTAGGCTACTACGTATACCGGAATGAT-A-GGTCGCATTTGTAGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTATACCGG-ATGATAATGGTCACATGTGTAGTA
*
75364499 CTATGTGC-AGGCTACTATGCGTACCAGATAGTTTCGAT
65 CTATGTACAAGG-TACTATGCGTACCAGATAGTTTCGAT
* * *
75364537 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTATACCGGATGATAATGGTCACATGTGTAGTAC
75364602 TATGTACAAGGTACTATG
66 TATGTACAAGGTACTATG
75364620 TGAACCGAAC
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
100 4 0.05
101 38 0.52
102 28 0.38
103 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTATACCGGATGATAATGGTCACATGTGTAGTAC
TATGTACAAGGTACTATGCGTACCAGATAGTTTCGAT
Found at i:75364596 original size:51 final size:50
Alignment explanation
Indices: 75364431--75364606 Score: 183
Period size: 51 Copynumber: 3.5 Consensus size: 50
75364421 AGTGAAAGTG
* * * * *
75364431 ATGGCCACGTGTGTAGTACTATGTGTAGGCTACTACGTATACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGGT
* * * * * *
75364482 A-GGTCGCATTTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGT
* * * *
75364531 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGT
75364582 AATGGTCACATGTGTAGTACTATGT
1 -ATGGTCACATGTGTAGTACTATGT
75364607 ACAAGGTACT
Statistics
Matches: 98, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
49 3 0.03
50 34 0.35
51 60 0.61
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGT
Found at i:75364674 original size:45 final size:45
Alignment explanation
Indices: 75364623--75364717 Score: 156
Period size: 45 Copynumber: 2.1 Consensus size: 45
75364613 TACTATGTGA
*
75364623 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCT-AATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAA-TCC
*
75364668 ACCGAACATCATTGATTAATAAGGTGGTTGGTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
75364713 ACCGA
1 ACCGA
75364718 GTATCTGTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 45 0.96
46 2 0.04
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:75369583 original size:51 final size:51
Alignment explanation
Indices: 75369434--75369631 Score: 186
Period size: 51 Copynumber: 3.9 Consensus size: 51
75369424 AGTGAAAGTG
* * *
75369434 ATGGTCATGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGA-A-TG
1 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * * *
75369483 ATAGGTCGCCTGTGTAGTACTATATGTACAGGCTACTATGCGTACCGGATAGT-
1 AT-GGTCACGTGTGTAGTAC--TATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * * *
75369536 TTCGATCACGTGTGTAGTACTATTTGCAGGCTACTACGTGTATCGGATGGTA
1 AT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * *
75369588 ATGGTCACATGTGTAGTAATATGTGCAGGCTACTATGTGAACCG
1 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
75369632 AACATCATTG
Statistics
Matches: 117, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
49 2 0.02
50 14 0.12
51 60 0.51
52 24 0.21
53 16 0.14
54 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (51 bp):
ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
Found at i:75369678 original size:45 final size:45
Alignment explanation
Indices: 75369628--75369722 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
75369618 TACTATGTGA
* * *
75369628 ACCGAACATCATTGATTAGTAAGGTGGTTGATATGTTATGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGATATGTGATGAATCC
* *
75369673 ACCGAACATCATTGATTAATAAGGTGGTTGGTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGATATGTGATGAATCC
75369718 ACCGA
1 ACCGA
75369723 GTATCTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGATATGTGATGAATCC
Found at i:75375150 original size:19 final size:19
Alignment explanation
Indices: 75375126--75375164 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
75375116 TTTTACATTA
*
75375126 ATTTTTTTGGCTTAATATT
1 ATTTTTTAGGCTTAATATT
*
75375145 ATTTTTTAGGCTTATTATT
1 ATTTTTTAGGCTTAATATT
75375164 A
1 A
75375165 GTATGATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62
Consensus pattern (19 bp):
ATTTTTTAGGCTTAATATT
Found at i:75379234 original size:19 final size:18
Alignment explanation
Indices: 75379210--75379255 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
75379200 TGCTCTATTT
* *
75379210 TGCATTCATTTCATGCATC
1 TGCATTCATGTCAT-CATA
75379229 TGCATTGCATGTCATCATA
1 TGCATT-CATGTCATCATA
75379248 TGCATTCA
1 TGCATTCA
75379256 AGATTATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 15 0.62
20 7 0.29
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (18 bp):
TGCATTCATGTCATCATA
Found at i:75384169 original size:40 final size:40
Alignment explanation
Indices: 75384114--75384340 Score: 409
Period size: 40 Copynumber: 5.7 Consensus size: 40
75384104 AGCATTGGAT
*
75384114 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
75384154 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
75384194 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
75384234 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
75384274 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
75384314 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
75384341 ATGTGTTTGC
Statistics
Matches: 180, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 180 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:75387340 original size:48 final size:48
Alignment explanation
Indices: 75387286--75387411 Score: 198
Period size: 48 Copynumber: 2.6 Consensus size: 48
75387276 TGAGATCCCG
* *
75387286 TGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTATGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTATGCAAA
* **
75387334 TGTAAGACCATGTCTAGGACATGGCATTAGTGATGATATGTATGCAAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTATGCAAA
*
75387382 TGTAAGACCATGTCTGGGATATGGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
75387412 CACCAATATG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTATGCAAA
Found at i:75387421 original size:48 final size:47
Alignment explanation
Indices: 75387286--75387462 Score: 169
Period size: 48 Copynumber: 3.7 Consensus size: 47
75387276 TGAGATCCCG
**
75387286 TGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTATGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CATGATATGTATGCCAA
* * *
75387334 TGTAAGACCATGTCTAGGACATGGCATTAGTG-ATGATATGTATGCAAA
1 TGTAAGACCATGTCTGGGACATGGCA-TCG-GCATGATATGTATGCCAA
* ** *
75387382 TGTAAGACCATGTCTGGGATATGGCATCGGCACCAATATGTGAT-CCCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA-TGATATGT-ATGCCAA
* * * * *
75387430 TATAAGACCATATCAGGGATATGGCTTCGGCAT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAT
75387463 CGTTAAGTGA
Statistics
Matches: 108, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
46 1 0.01
47 3 0.03
48 99 0.92
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATGATATGTATGCCAA
Found at i:75387473 original size:48 final size:48
Alignment explanation
Indices: 75387384--75387501 Score: 128
Period size: 48 Copynumber: 2.5 Consensus size: 48
75387374 TATGCAAATG
* *
75387384 TAAGACCATGTCTGGGATATGGCATCGGCACCAATATGTGATCCCATA
1 TAAGACCATATCTGGGATATGGCATCGGCACCAATAAGTGATCCCATA
* * * ** ****
75387432 TAAGACCATATCAGGGATATGGCTTCGGCATCGTTAAGTGATTTTGTA
1 TAAGACCATATCTGGGATATGGCATCGGCACCAATAAGTGATCCCATA
*
75387480 TAAGACCATATTTGGGATATGG
1 TAAGACCATATCTGGGATATGG
75387502 TGTCCATATG
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (48 bp):
TAAGACCATATCTGGGATATGGCATCGGCACCAATAAGTGATCCCATA
Found at i:75404270 original size:46 final size:47
Alignment explanation
Indices: 75404220--75404523 Score: 247
Period size: 45 Copynumber: 6.7 Consensus size: 47
75404210 TATGTGCGCT
** *
75404220 AGTGTTAA-ACCACATTGGACATGGCATCGGCCATATTACGAGAGTC
1 AGTGTTAAGACCATGTTGGACATGGCATCGGCCATATTACGAGAGCC
* * * * *
75404266 AGTG-TAAGACCATGTTGCACATGGCATC-GACGT-TGACTGTGAGCC
1 AGTGTTAAGACCATGTTGGACATGGCATCGGCCATATTAC-GAGAGCC
* *
75404311 AGT-ATAAGACCATGTTGGACATGGCATCGGCCACATTACGAGAGCC
1 AGTGTTAAGACCATGTTGGACATGGCATCGGCCATATTACGAGAGCC
* * ** * *** *
75404357 AGTG-TAAGACCATGCTAGACATGAAATCAGTGTTGATT--GTGAGCC
1 AGTGTTAAGACCATGTTGGACATGGCATCGGCCAT-ATTACGAGAGCC
* *
75404402 AGTG-TAAGACCATGTTGGACATGGCACCGGCCACATTACGAGAGCC
1 AGTGTTAAGACCATGTTGGACATGGCATCGGCCATATTACGAGAGCC
* * ** *
75404448 AGTG-TAAGAACATGTTGGACATGGCATTGGCGTTGATT--GTGAGCC
1 AGTGTTAAGACCATGTTGGACATGGCATCGGCCAT-ATTACGAGAGCC
*
75404493 AGTG-TAAGACCATGTTGGACATGGCCTCGGC
1 AGTGTTAAGACCATGTTGGACATGGCATCGGC
75404524 ATTGAGAAGA
Statistics
Matches: 203, Mismatches: 45, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
44 6 0.03
45 101 0.50
46 87 0.43
47 9 0.04
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTTAAGACCATGTTGGACATGGCATCGGCCATATTACGAGAGCC
Found at i:75404325 original size:45 final size:45
Alignment explanation
Indices: 75404265--75404564 Score: 259
Period size: 45 Copynumber: 6.6 Consensus size: 45
75404255 TTACGAGAGT
*
75404265 CAGTGTAAGACCATGTTGCACATGGCATCGACGTTGACTGTGAGC
1 CAGTGTAAGACCATGTTGGACATGGCATCGACGTTGACTGTGAGC
* * *
75404310 CAGTATAAGACCATGTTGGACATGGCATCGGCCACATT-AC-GAGAGC
1 CAGTGTAAGACCATGTTGGACATGGCATC-G--ACGTTGACTGTGAGC
* * ** * *
75404356 CAGTGTAAGACCATGCTAGACATGAAATC-AGTGTTGATTGTGAGC
1 CAGTGTAAGACCATGTTGGACATGGCATCGA-CGTTGACTGTGAGC
* * *
75404401 CAGTGTAAGACCATGTTGGACATGGCACCGGCCACATT-AC-GAGAGC
1 CAGTGTAAGACCATGTTGGACATGGCATC-G--ACGTTGACTGTGAGC
* * * *
75404447 CAGTGTAAGAACATGTTGGACATGGCATTGGCGTTGATTGTGAGC
1 CAGTGTAAGACCATGTTGGACATGGCATCGACGTTGACTGTGAGC
* * * ** *
75404492 CAGTGTAAGACCATGTTGGACATGGCCTCGGCATTGAGAAGAGAGC
1 CAGTGTAAGACCATGTTGGACATGGCATCGACGTTGA-CTGTGAGC
*
75404538 TAGTGTAAGACCATGTTTGGGACATGG
1 CAGTGTAAGACCATG-TT-GGACATGG
75404565 TGTCAATAAT
Statistics
Matches: 203, Mismatches: 37, Indels: 27
0.76 0.14 0.10
Matches are distributed among these distances:
42 1 0.00
43 5 0.02
44 2 0.01
45 95 0.47
46 80 0.39
47 5 0.02
48 14 0.07
49 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
CAGTGTAAGACCATGTTGGACATGGCATCGACGTTGACTGTGAGC
Found at i:75404349 original size:91 final size:90
Alignment explanation
Indices: 75404176--75404523 Score: 432
Period size: 91 Copynumber: 3.8 Consensus size: 90
75404166 TGTATGCTAT
* * * * **
75404176 TGTAAGACCAT-TCTAGACATGGCATCGGCATTGATATGTGCGCTAGTGTTAA-ACCACATTGGA
1 TGTAAGACCATGT-T-GACATGGCATCGACGTTGAT-TGTGAGCCAGTG-TAAGACCATGTTGGA
* *
75404239 CATGGCATCGGCCATATTACGAGAGTCAG
62 CATGGCATCGGCCACATTACGAGAGCCAG
* *
75404268 TGTAAGACCATGTTGCACATGGCATCGACGTTGACTGTGAGCCAGTATAAGACCATGTTGGACAT
1 TGTAAGACCATGTTG-ACATGGCATCGACGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACAT
75404333 GGCATCGGCCACATTACGAGAGCCAG
65 GGCATCGGCCACATTACGAGAGCCAG
* ** *
75404359 TGTAAGACCATGCTAGACATGAAATC-AGTGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACA
1 TGTAAGACCATG-TTGACATGGCATCGA-CGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACA
*
75404423 TGGCACCGGCCACATTACGAGAGCCAG
64 TGGCATCGGCCACATTACGAGAGCCAG
* * *
75404450 TGTAAGAACATGTTGGACATGGCATTGGCGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACAT
1 TGTAAGACCATGTT-GACATGGCATCGACGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACAT
*
75404515 GGCCTCGGC
65 GGCATCGGC
75404524 ATTGAGAAGA
Statistics
Matches: 223, Mismatches: 26, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
90 5 0.02
91 187 0.84
92 30 0.13
93 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (90 bp):
TGTAAGACCATGTTGACATGGCATCGACGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATG
GCATCGGCCACATTACGAGAGCCAG
Found at i:75404491 original size:182 final size:183
Alignment explanation
Indices: 75404176--75404523 Score: 493
Period size: 182 Copynumber: 1.9 Consensus size: 183
75404166 TGTATGCTAT
* ** * * *
75404176 TGTAAGACCATTCTAGACATGGCATCGGCATTGATATGTGCGCTAGTGTTAAACCACATTGGACA
1 TGTAAGACCATGCTAGACATGAAATCAGCATTGATATGTGAGCCAGTGTTAAACCACATTGGACA
* * * *
75404241 TGGCATCGGCCATATTACGAGAGTCAGTGTAAGACCATGTTGCACATGGCATCGACGTTGACTGT
66 TGGCACCGGCCACATTACGAGAGCCAGTGTAAGAACATGTTGCACATGGCATCGACGTTGACTGT
75404306 GAGCCAGTATAAGACCATGTTGGACATGGCATCGGCCACATTACGAGAGCCAG
131 GAGCCAGTATAAGACCATGTTGGACATGGCATCGGCCACATTACGAGAGCCAG
** **
75404359 TGTAAGACCATGCTAGACATGAAATCAGTGTTGAT-TGTGAGCCAGTG-TAAGACCATGTTGGAC
1 TGTAAGACCATGCTAGACATGAAATCAGCATTGATATGTGAGCCAGTGTTAA-ACCACATTGGAC
* * * *
75404422 ATGGCACCGGCCACATTACGAGAGCCAGTGTAAGAACATGTTGGACATGGCATTGGCGTTGATTG
65 ATGGCACCGGCCACATTACGAGAGCCAGTGTAAGAACATGTTGCACATGGCATCGACGTTGACTG
* *
75404487 TGAGCCAGTGTAAGACCATGTTGGACATGGCCTCGGC
130 TGAGCCAGTATAAGACCATGTTGGACATGGCATCGGC
75404524 ATTGAGAAGA
Statistics
Matches: 144, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
181 3 0.02
182 112 0.78
183 29 0.20
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (183 bp):
TGTAAGACCATGCTAGACATGAAATCAGCATTGATATGTGAGCCAGTGTTAAACCACATTGGACA
TGGCACCGGCCACATTACGAGAGCCAGTGTAAGAACATGTTGCACATGGCATCGACGTTGACTGT
GAGCCAGTATAAGACCATGTTGGACATGGCATCGGCCACATTACGAGAGCCAG
Found at i:75404536 original size:91 final size:89
Alignment explanation
Indices: 75404176--75404564 Score: 408
Period size: 91 Copynumber: 4.2 Consensus size: 89
75404166 TGTATGCTAT
* * * * **
75404176 TGTAAGACCAT-TCTAGACATGGCATCGGCATTGATATGTGCGCTAGTGTTAA-ACCACATTGGA
1 TGTAAGACCATGT-TGGACATGGCATCGGCGTTGAT-TGTGAGCCAGTG-TAAGACCATGTTGGA
* *
75404239 CATGGCATCGGCCATATTACGAGAGTCAG
63 CATGGCCTCGGCC--ATTACGAGAGCCAG
* * * *
75404268 TGTAAGACCATGTTGCACATGGCATCGACGTTGACTGTGAGCCAGTATAAGACCATGTTGGACAT
1 TGTAAGACCATGTTGGACATGGCATCGGCGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACAT
*
75404333 GGCATCGGCCACATTACGAGAGCCAG
66 GGCCTCGG-C-CATTACGAGAGCCAG
* * ** * *
75404359 TGTAAGACCATGCTAGACATGAAATCAGTGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACAT
1 TGTAAGACCATGTTGGACATGGCATCGGCGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACAT
75404424 GGCAC-CGGCCACATTACGAGAGCCAG
66 GGC-CTCGG-C-CATTACGAGAGCCAG
* *
75404450 TGTAAGAACATGTTGGACATGGCATTGGCGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACAT
1 TGTAAGACCATGTTGGACATGGCATCGGCGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACAT
* *
75404515 GGCCTCGG-CATTGAGAAGAGAGCTAG
66 GGCCTCGGCCATT---ACGAGAGCCAG
75404541 TGTAAGACCATGTTTGGGACATGG
1 TGTAAGACCATG-TT-GGACATGG
75404565 TGTCAATAAT
Statistics
Matches: 253, Mismatches: 33, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
88 4 0.02
90 4 0.02
91 204 0.81
92 31 0.12
93 10 0.04
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (89 bp):
TGTAAGACCATGTTGGACATGGCATCGGCGTTGATTGTGAGCCAGTGTAAGACCATGTTGGACAT
GGCCTCGGCCATTACGAGAGCCAG
Found at i:75404553 original size:46 final size:45
Alignment explanation
Indices: 75404176--75404564 Score: 209
Period size: 46 Copynumber: 8.5 Consensus size: 45
75404166 TGTATGCTAT
* * * * * *
75404176 TGTAAGACCAT-TCTAGACATGGCATCGGCATTGATATGTGCGCTAG
1 TGTAAGACCATGT-TGGACATGGCCTCGGCATTGA-AAGAGAGCCAG
** * * * *
75404222 TGTTAA-ACCACATTGGACATGGCATCGGCCATAT-TACGAGAGTCAG
1 TG-TAAGACCATGTTGGACATGGCCTCGG-CAT-TGAAAGAGAGCCAG
* * * * ** *
75404268 TGTAAGACCATGTTGCACATGGCATCGACGTTGACTGTGAGCCAG
1 TGTAAGACCATGTTGGACATGGCCTCGGCATTGAAAGAGAGCCAG
* * *
75404313 TATAAGACCATGTTGGACATGGCATCGGCCACATT--ACGAGAGCCAG
1 TGTAAGACCATGTTGGACATGGCCTCGG---CATTGAAAGAGAGCCAG
* * *** * ** ** *
75404359 TGTAAGACCATGCTAGACATGAAATCAGTGTTGATTGTGAGCCAG
1 TGTAAGACCATGTTGGACATGGCCTCGGCATTGAAAGAGAGCCAG
*
75404404 TGTAAGACCATGTTGGACATGGCAC-CGGCCACATT--ACGAGAGCCAG
1 TGTAAGACCATGTTGGACATGGC-CTCGG---CATTGAAAGAGAGCCAG
* * * * ** *
75404450 TGTAAGAACATGTTGGACATGGCATTGGCGTTGATTGTGAGCCAG
1 TGTAAGACCATGTTGGACATGGCCTCGGCATTGAAAGAGAGCCAG
*
75404495 TGTAAGACCATGTTGGACATGGCCTCGGCATTGAGAAGAGAGCTAG
1 TGTAAGACCATGTTGGACATGGCCTCGGCATTGA-AAGAGAGCCAG
75404541 TGTAAGACCATGTTTGGGACATGG
1 TGTAAGACCATG-TT-GGACATGG
75404565 TGTCAATAAT
Statistics
Matches: 260, Mismatches: 62, Indels: 40
0.72 0.17 0.11
Matches are distributed among these distances:
43 5 0.02
44 1 0.00
45 104 0.40
46 127 0.49
47 9 0.03
48 14 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (45 bp):
TGTAAGACCATGTTGGACATGGCCTCGGCATTGAAAGAGAGCCAG
Found at i:75407674 original size:54 final size:54
Alignment explanation
Indices: 75407612--75407738 Score: 204
Period size: 54 Copynumber: 2.4 Consensus size: 54
75407602 AAATGATGAT
*
75407612 GAAA-AAAAA-AAGGAAAGAAAAGAAGCTCTCATGTTGCTCTTGGCCGAATAGAA
1 GAAAGAAAAAGAAGGAAA-AAAAAAAGCTCTCATGTTGCTCTTGGCCGAATAGAA
* *
75407665 GAAAGAAAAAGAAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAA
1 GAAAGAAAAAGAAGGAAAAAAAAAAGCTCTCATGTTGCTCTTGGCCGAATAGAA
75407719 GAAAGAAAAAGAAGGAAAAA
1 GAAAGAAAAAGAAGGAAAAA
75407739 GAGCTTTGAG
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
53 4 0.06
54 58 0.85
55 6 0.09
ACGTcount: A:0.53, C:0.10, G:0.22, T:0.15
Consensus pattern (54 bp):
GAAAGAAAAAGAAGGAAAAAAAAAAGCTCTCATGTTGCTCTTGGCCGAATAGAA
Found at i:75409105 original size:40 final size:40
Alignment explanation
Indices: 75408868--75409091 Score: 380
Period size: 40 Copynumber: 5.6 Consensus size: 40
75408858 GGATTGATAA
* *
75408868 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
75408908 CCGGGATAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
75408947 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75408987 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75409027 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
75409067 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75409092 AGCTAGTAGC
Statistics
Matches: 175, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 34 0.19
40 141 0.81
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75410755 original size:93 final size:93
Alignment explanation
Indices: 75410643--75410814 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
75410633 CGCCCATAAG
*
75410643 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTCCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATCCGCATCCATAAGTGAACTCGGACTCAACTC
75410707 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
75410736 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
75410801 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75410815 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75410811 original size:46 final size:46
Alignment explanation
Indices: 75410636--75410811 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
75410626 TGTAACCCGC
* * *
75410636 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTCCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
75410682 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75410732 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75410775 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75410812 TGCTCAATCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75419696 original size:31 final size:31
Alignment explanation
Indices: 75419658--75419720 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
75419648 GTTATTATGA
75419658 AATTAATGCTTCGATATGGTATAAAATGTAT
1 AATTAATGCTTCGATATGGTATAAAATGTAT
75419689 AATTAATGCTTCGATATGGTATAAAATGTAT
1 AATTAATGCTTCGATATGGTATAAAATGTAT
75419720 A
1 A
75419721 CTTGTGTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.38
Consensus pattern (31 bp):
AATTAATGCTTCGATATGGTATAAAATGTAT
Found at i:75431536 original size:40 final size:40
Alignment explanation
Indices: 75431485--75431881 Score: 668
Period size: 40 Copynumber: 9.9 Consensus size: 40
75431475 ATAACCGCAA
* * * *
75431485 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
75431525 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
75431565 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
75431605 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
75431645 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
75431685 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
75431725 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
75431765 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
75431805 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
75431845 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
75431882 ATGCTCATGC
Statistics
Matches: 339, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 339 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:75437465 original size:40 final size:40
Alignment explanation
Indices: 75437322--75437458 Score: 172
Period size: 40 Copynumber: 3.5 Consensus size: 40
75437312 TGGATATTCG
* *
75437322 GAAGGCATTTGTGTGAGTTACTA-ATTCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATAATCCGGGCTAAGT-CC
* *
75437362 GAAGGCATTTGTGCGAGTTACCA-AATTCGGGCTAAGTCC
1 GAAGGCATTTGTGCGAGTTACTATAATCCGGGCTAAGTCC
* *
75437401 GAAGGCATTGGTGCGAGTTACTATAA-CCGGGCTATGTCC
1 GAAGGCATTTGTGCGAGTTACTATAATCCGGGCTAAGTCC
*
75437440 AGAAGGCATTTGAGCGAGT
1 -GAAGGCATTTGTGCGAGT
75437459 AGCTATATTC
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.40
40 51 0.60
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTATAATCCGGGCTAAGTCC
Found at i:75450613 original size:34 final size:34
Alignment explanation
Indices: 75450575--75450642 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
75450565 AGATTATGAT
75450575 GTAATGAGCTTACCTATATTTAATCGATGATTCC
1 GTAATGAGCTTACCTATATTTAATCGATGATTCC
75450609 GTAATGAGCTTACCTATATTTAATCGATGATTCC
1 GTAATGAGCTTACCTATATTTAATCGATGATTCC
75450643 ACGATGTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (34 bp):
GTAATGAGCTTACCTATATTTAATCGATGATTCC
Found at i:75458827 original size:80 final size:80
Alignment explanation
Indices: 75458690--75458853 Score: 303
Period size: 80 Copynumber: 2.1 Consensus size: 80
75458680 ACTCATGCAC
75458690 GTTA-GTTTATAATGGTAGATCAATTGTTGATGTCTATTTTGATAGCTAATGAGTGTATTTGTGC
1 GTTACGTTTATAATGGTAGATCAATTGTTGATGTCTATTTTGATAGCTAATGAGTGTATTTGTGC
75458754 ATGAAGTATTGTAAG
66 ATGAAGTATTGTAAG
*
75458769 GTTACGTTTATAATGGTAGATCAATTGTTGATGTCTATTTTGATAGCTAATGAGTGTATTTGTGT
1 GTTACGTTTATAATGGTAGATCAATTGTTGATGTCTATTTTGATAGCTAATGAGTGTATTTGTGC
75458834 ATGAAGTATTGTAAG
66 ATGAAGTATTGTAAG
*
75458849 CTTAC
1 GTTAC
75458854 TACATGATAA
Statistics
Matches: 82, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
79 4 0.05
80 78 0.95
ACGTcount: A:0.27, C:0.06, G:0.23, T:0.43
Consensus pattern (80 bp):
GTTACGTTTATAATGGTAGATCAATTGTTGATGTCTATTTTGATAGCTAATGAGTGTATTTGTGC
ATGAAGTATTGTAAG
Found at i:75459294 original size:23 final size:23
Alignment explanation
Indices: 75459261--75459339 Score: 104
Period size: 23 Copynumber: 3.4 Consensus size: 23
75459251 TAATGTTTTA
* *
75459261 TAAAGCTTTTGTGGCTTATTCTG
1 TAAAGCCTTTGTGGCATATTCTG
*
75459284 TAAAGCCTTTGTGGCGTATTCTG
1 TAAAGCCTTTGTGGCATATTCTG
* * *
75459307 TAAAGCCTGTCTGGCATATTTTG
1 TAAAGCCTTTGTGGCATATTCTG
75459330 TAAAGCCTTT
1 TAAAGCCTTT
75459340 ATGGTGTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42
Consensus pattern (23 bp):
TAAAGCCTTTGTGGCATATTCTG
Found at i:75459349 original size:23 final size:23
Alignment explanation
Indices: 75459261--75459351 Score: 101
Period size: 23 Copynumber: 4.0 Consensus size: 23
75459251 TAATGTTTTA
* * *
75459261 TAAAGCTTTTGTGGCTTATTCTG
1 TAAAGCCTTTATGGCGTATTCTG
*
75459284 TAAAGCCTTTGTGGCGTATTCTG
1 TAAAGCCTTTATGGCGTATTCTG
* * * *
75459307 TAAAGCCTGTCTGGCATATTTTG
1 TAAAGCCTTTATGGCGTATTCTG
*
75459330 TAAAGCCTTTATGGTGTATTCT
1 TAAAGCCTTTATGGCGTATTCT
75459352 ATGATGCTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (23 bp):
TAAAGCCTTTATGGCGTATTCTG
Found at i:75459884 original size:24 final size:24
Alignment explanation
Indices: 75459853--75459901 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
75459843 TGTGATATGG
75459853 GTTGATTTAAGACATGATTTGACT
1 GTTGATTTAAGACATGATTTGACT
75459877 GTTGATTTAAGACATGATTTGACT
1 GTTGATTTAAGACATGATTTGACT
75459901 G
1 G
75459902 GTAATCTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (24 bp):
GTTGATTTAAGACATGATTTGACT
Found at i:75461105 original size:20 final size:20
Alignment explanation
Indices: 75461060--75461105 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
75461050 AAATACTAAC
*
75461060 TATATTTTATAAAATAAAAA
1 TATATTTTATAAAAAAAAAA
75461080 TA-ATTTT-TAATAAAAAAAA
1 TATATTTTATAA-AAAAAAAA
75461099 TATATTT
1 TATATTT
75461106 GTAAATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 3 0.13
19 14 0.61
20 6 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TATATTTTATAAAAAAAAAA
Found at i:75461859 original size:15 final size:16
Alignment explanation
Indices: 75461834--75461866 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
75461824 GGAGCAAATG
*
75461834 TATTATAATTTGACTT
1 TATTATAATTTAACTT
75461850 TATT-TAATTTAACTT
1 TATTATAATTTAACTT
75461865 TA
1 TA
75461867 AGTTTTGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (16 bp):
TATTATAATTTAACTT
Found at i:75465993 original size:81 final size:80
Alignment explanation
Indices: 75465844--75466002 Score: 255
Period size: 80 Copynumber: 2.0 Consensus size: 80
75465834 TTTTTAGAAG
* * * *
75465844 ATAGGTTAAAAAGAATTTTGTATTTGTCGAAAGGAAAAAGATTAGAGGAGATTGAAATAGCAGCA
1 ATAGGTTAAAAACAACTTTGTATTTGTAGAAAGGAAAAAGATTAGAGGAGATTGAAATAGCAACA
75465909 TACAAAAGAAATAAT
66 TACAAAAGAAATAAT
* *
75465924 ATAGGTTTAAAACAACTTTGTATTTGTAGAAAGGAAAAAGATTTAGAGGAGATTGAAATAGCAAT
1 ATAGGTTAAAAACAACTTTGTATTTGTAGAAAGGAAAAAGA-TTAGAGGAGATTGAAATAGCAAC
75465989 ATACAAAAGAAATA
65 ATACAAAAGAAATA
75466003 TATGTTCATC
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 37 0.51
81 35 0.49
ACGTcount: A:0.49, C:0.05, G:0.20, T:0.26
Consensus pattern (80 bp):
ATAGGTTAAAAACAACTTTGTATTTGTAGAAAGGAAAAAGATTAGAGGAGATTGAAATAGCAACA
TACAAAAGAAATAAT
Found at i:75466029 original size:81 final size:79
Alignment explanation
Indices: 75465864--75466010 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 79
75465854 AAGAATTTTG
* *
75465864 TATTTGTCGAAAGGAAAAAGATTAGAGGAGATTGAAATAGCAGCATACAAAAGAAATAATATAGG
1 TATTTGTAGAAAGGAAAAAGATTAGAGGAGATTGAAATAGCAACATACAAAAGAAATAATATA-G
* **
75465929 TTTAAAACAACTTTG
65 TTCAAAACAACTTAC
*
75465944 TATTTGTAGAAAGGAAAAAGATTTAGAGGAGATTGAAATAGCAATATACAAAAGAAAT-ATAT-G
1 TATTTGTAGAAAGGAAAAAGA-TTAGAGGAGATTGAAATAGCAACATACAAAAGAAATAATATAG
75466007 TTCA
65 TTCA
75466011 TCATCTATCT
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
78 4 0.06
80 24 0.39
81 34 0.55
ACGTcount: A:0.48, C:0.06, G:0.20, T:0.26
Consensus pattern (79 bp):
TATTTGTAGAAAGGAAAAAGATTAGAGGAGATTGAAATAGCAACATACAAAAGAAATAATATAGT
TCAAAACAACTTAC
Found at i:75466079 original size:20 final size:21
Alignment explanation
Indices: 75466054--75466096 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
75466044 TCAAGTTTAA
75466054 ATATTT-AATTTT-ATTAAAAT
1 ATATTTAAATTTTCA-TAAAAT
75466074 ATATTTAAATTTTCATAAAAT
1 ATATTTAAATTTTCATAAAAT
75466095 AT
1 AT
75466097 CCTTTCATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.29
21 14 0.67
22 1 0.05
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATTTAAATTTTCATAAAAT
Found at i:75467254 original size:14 final size:15
Alignment explanation
Indices: 75467227--75467255 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75467217 TAATACCTCT
75467227 AGTTTTCATATTAAA
1 AGTTTTCATATTAAA
75467242 AGTTTTC-TATTAAA
1 AGTTTTCATATTAAA
75467256 TAATCTAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (15 bp):
AGTTTTCATATTAAA
Found at i:75471570 original size:17 final size:19
Alignment explanation
Indices: 75471550--75471587 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
75471540 TTTTATATAA
75471550 AAAATAA-AATTATT-CTT
1 AAAATAATAATTATTGCTT
*
75471567 AAAATAATACTTATTGCTT
1 AAAATAATAATTATTGCTT
75471586 AA
1 AA
75471588 TAAAAACAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 6 0.33
19 5 0.28
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (19 bp):
AAAATAATAATTATTGCTT
Done.