Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 23 of 316
Found at i:6677335 original size:65 final size:65
Alignment explanation
Indices: 6677253--6677375 Score: 237
Period size: 65 Copynumber: 1.9 Consensus size: 65
6677243 GGCAACTAAG
*
6677253 TCTCAAGTTTGATTCTTGTCAATCATGCTCATTTCATCGAGCATGGCTTGCTTCCAACAGCTAGC
1 TCTCAAGTCTGATTCTTGTCAATCATGCTCATTTCATCGAGCATGGCTTGCTTCCAACAGCTAGC
6677318 TCTCAAGTCTGATTCTTGTCAATCATGCTCATTTCATCGAGCATGGCTTGCTTCCAAC
1 TCTCAAGTCTGATTCTTGTCAATCATGCTCATTTCATCGAGCATGGCTTGCTTCCAAC
6677376 CTTGTTGAGC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (65 bp):
TCTCAAGTCTGATTCTTGTCAATCATGCTCATTTCATCGAGCATGGCTTGCTTCCAACAGCTAGC
Found at i:6681346 original size:10 final size:10
Alignment explanation
Indices: 6681327--6681386 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
6681317 TTAAATTTTA
6681327 AAAGATAAAT
1 AAAGATAAAT
6681337 ACAA-ATAAAT
1 A-AAGATAAAT
*
6681347 AAAGATAATT
1 AAAGATAAAT
*
6681357 AAATATAAAT
1 AAAGATAAAT
6681367 AAAGATAAAT
1 AAAGATAAAT
6681377 GAAA-ATAAAT
1 -AAAGATAAAT
6681387 CCTAAAATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:6681350 original size:20 final size:19
Alignment explanation
Indices: 6681327--6681386 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 19
6681317 TTAAATTTTA
6681327 AAAGATAAATACAAATAAAT
1 AAAGATAAATA-AAATAAAT
*
6681347 AAAGATAATTAAATATAAAT
1 AAAGATAAATAAA-ATAAAT
6681367 AAAGATAAATGAAAATAAAT
1 AAAGATAAAT-AAAATAAAT
6681387 CCTAAAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.06
20 31 0.86
21 3 0.08
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (19 bp):
AAAGATAAATAAAATAAAT
Found at i:6682198 original size:95 final size:96
Alignment explanation
Indices: 6682030--6682207 Score: 268
Period size: 95 Copynumber: 1.9 Consensus size: 96
6682020 TTTTTATTTA
* * *
6682030 TTTATTTTTGCTTAAGAATATATTGAATATTTTGACGTGAAGAGAGATAACAACCAAGCACCCCA
1 TTTATTTTTGCTTAAGAACATATCGAACATTTTGACGTGAAGAGAGATAACAACCAAGCACCCCA
* *
6682095 CCCTGGTTACTCAGCCCATTATACTCCTAAT
66 CCCCGGTTACTCAACCCATTATACTCCTAAT
* * * *
6682126 TTTATTTTT-CTTAAGAACATATCGAACCTTTTGACGTGAAGAGAGATTACAGCCAAGCACCTCA
1 TTTATTTTTGCTTAAGAACATATCGAACATTTTGACGTGAAGAGAGATAACAACCAAGCACCCCA
6682190 CCCCGGTTACTCAACCCA
66 CCCCGGTTACTCAACCCA
6682208 ACACATTCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
95 64 0.88
96 9 0.12
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (96 bp):
TTTATTTTTGCTTAAGAACATATCGAACATTTTGACGTGAAGAGAGATAACAACCAAGCACCCCA
CCCCGGTTACTCAACCCATTATACTCCTAAT
Found at i:6683346 original size:5 final size:5
Alignment explanation
Indices: 6683336--6683418 Score: 53
Period size: 5 Copynumber: 15.6 Consensus size: 5
6683326 ATTAATATCC
* * *
6683336 AAATA AAATA AAGTA ATAA-A ATAATA AATTAA AAATAA ATAATA AATTAA
1 AAATA AAATA AAATA A-AATA A-AATA AAAT-A AAAT-A A-AATA AAAT-A
*
6683386 AAATA AATATA AAA-A GAATA AAATA AAATA AAA
1 AAATA AA-ATA AAATA AAATA AAATA AAATA AAA
6683419 ATTGGGTTAC
Statistics
Matches: 63, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
4 3 0.05
5 36 0.57
6 21 0.33
7 3 0.05
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (5 bp):
AAATA
Found at i:6683359 original size:18 final size:16
Alignment explanation
Indices: 6683336--6683419 Score: 59
Period size: 18 Copynumber: 5.1 Consensus size: 16
6683326 ATTAATATCC
6683336 AAATAAAATAAAGTAATA
1 AAATAAAATAAA-TAA-A
*
6683354 AAAT--AATAAATTAA
1 AAATAAAATAAATAAA
*
6683368 AAATAAATAATAAATTAA
1 AAAT-AA-AATAAATAAA
6683386 AAAT-AAATATAA-AAA
1 AAATAAAATA-AATAAA
*
6683401 GAATAAAATAAAATAAA
1 AAATAAAAT-AAATAAA
6683418 AA
1 AA
6683420 TTGGGTTACC
Statistics
Matches: 54, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
14 5 0.09
15 11 0.20
16 15 0.28
17 5 0.09
18 18 0.33
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (16 bp):
AAATAAAATAAATAAA
Found at i:6683368 original size:26 final size:24
Alignment explanation
Indices: 6683336--6683418 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 24
6683326 ATTAATATCC
6683336 AAATAAAATAAAGTAATAAAATAA
1 AAATAAAATAAAGTAATAAAATAA
*
6683360 TAAATTAAAAATAAA-TAATAAATTAA
1 -AAA-T-AAAATAAAGTAATAAAATAA
6683386 AAATAAATATAAAAAG-AATAAAAT-A
1 AAATAAA-AT--AAAGTAATAAAATAA
6683411 AAATAAAA
1 AAATAAAA
6683419 ATTGGGTTAC
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
23 3 0.06
24 4 0.08
25 14 0.28
26 21 0.42
27 8 0.16
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (24 bp):
AAATAAAATAAAGTAATAAAATAA
Found at i:6683374 original size:11 final size:11
Alignment explanation
Indices: 6683358--6683420 Score: 50
Period size: 11 Copynumber: 6.3 Consensus size: 11
6683348 GTAATAAAAT
6683358 AATAAATTAAA
1 AATAAATTAAA
6683369 AATAAA-T---
1 AATAAATTAAA
6683376 AATAAATTAAA
1 AATAAATTAAA
6683387 AATAAATATAAA
1 AATAAAT-TAAA
*
6683399 AA-GAA-T-AA
1 AATAAATTAAA
*
6683407 AATAAAATAAA
1 AATAAATTAAA
6683418 AAT
1 AAT
6683421 TGGGTTACCT
Statistics
Matches: 42, Mismatches: 2, Indels: 16
0.70 0.03 0.27
Matches are distributed among these distances:
7 6 0.14
8 5 0.12
9 3 0.07
10 2 0.05
11 20 0.48
12 6 0.14
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.24
Consensus pattern (11 bp):
AATAAATTAAA
Found at i:6685274 original size:16 final size:17
Alignment explanation
Indices: 6685253--6685287 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
6685243 TAATGTCTAT
6685253 GAAAATTA-TTAATTGA
1 GAAAATTACTTAATTGA
6685269 GAAAATTATCTTAATTGA
1 GAAAATTA-CTTAATTGA
6685287 G
1 G
6685288 GGGTTAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (17 bp):
GAAAATTACTTAATTGA
Found at i:6686422 original size:50 final size:50
Alignment explanation
Indices: 6686347--6686623 Score: 455
Period size: 50 Copynumber: 5.5 Consensus size: 50
6686337 CCATGGCAAC
* *
6686347 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
6686397 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
6686447 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
6686497 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
6686547 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
6686598 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
6686624 CTGATCAATG
Statistics
Matches: 214, Mismatches: 12, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
50 191 0.89
51 23 0.11
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:6686643 original size:32 final size:32
Alignment explanation
Indices: 6686602--6686662 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
6686592 AATGGCAAGT
6686602 AAAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAAGTGGTAGCTTCGGCTACCTGATCAATG
6686634 AAAAAGTGGTAGCTTCGGCTACCTGATCA
1 AAAAAGTGGTAGCTTCGGCTACCTGATCA
6686663 TCGGCTACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (32 bp):
AAAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:6686701 original size:46 final size:47
Alignment explanation
Indices: 6686616--6686706 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 47
6686606 AGTGGTAGCT
*
6686616 TCGGCTACCTGATCAATGAAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAAGTGGTAGCTCCGGCTACCTGATCA
* * *
6686663 TCGGCTACTTGATTAGTGAAAAA-TGGTAGCTCCGGCTACCTGAT
1 TCGGCTACCTGATCAATGAAAAAGTGGTAGCTCCGGCTACCTGAT
6686707 AAGTGAATAG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 20 0.50
47 20 0.50
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (47 bp):
TCGGCTACCTGATCAATGAAAAAGTGGTAGCTCCGGCTACCTGATCA
Found at i:6686712 original size:31 final size:31
Alignment explanation
Indices: 6686664--6686732 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
6686654 ACCTGATCAT
* * *
6686664 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATAAGTGAAAAATGATAGCTC
* * *
6686695 CGGCTACCTGATAAGTGAATAGTGATAGCTT
1 CGGCTACCTGATAAGTGAAAAATGATAGCTC
6686726 CGGCTAC
1 CGGCTAC
6686733 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATAAGTGAAAAATGATAGCTC
Found at i:6688210 original size:33 final size:33
Alignment explanation
Indices: 6688164--6688237 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
6688154 TTTCCTTTTG
* * *
6688164 GAAATCAAGAGTTTGCCGTAGAATTTACTGTTA
1 GAAATCAACAGTTTGCCATAGAATCTACTGTTA
* * *
6688197 GAAATCAACAGTTTGCCATTGTATCTGCTGTTA
1 GAAATCAACAGTTTGCCATAGAATCTACTGTTA
6688230 GAAATCAA
1 GAAATCAA
6688238 GCATATTAGC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (33 bp):
GAAATCAACAGTTTGCCATAGAATCTACTGTTA
Found at i:6690608 original size:10 final size:10
Alignment explanation
Indices: 6690581--6690618 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
6690571 TTAAATTCTA
*
6690581 AAAGATAAAT
1 AAAGATAATT
6690591 ACAA-ATAATT
1 A-AAGATAATT
6690601 AAAGATAATT
1 AAAGATAATT
6690611 AAAGATAA
1 AAAGATAA
6690619 ATGAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAATT
Found at i:6690628 original size:10 final size:10
Alignment explanation
Indices: 6690615--6690640 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
6690605 ATAATTAAAG
6690615 ATAAATGAAA
1 ATAAATGAAA
6690625 ATAAATGAAA
1 ATAAATGAAA
6690635 ATAAAT
1 ATAAAT
6690641 CCTAAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (10 bp):
ATAAATGAAA
Found at i:6714622 original size:17 final size:18
Alignment explanation
Indices: 6714586--6714625 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
6714576 CTTCTAAGAC
*
6714586 GCACTTTTGGGACAAAAA
1 GCACTTTTGAGACAAAAA
*
6714604 GCACTTTTGAGA-TAAAA
1 GCACTTTTGAGACAAAAA
6714621 GCACT
1 GCACT
6714626 CCTAAACAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (18 bp):
GCACTTTTGAGACAAAAA
Found at i:6718032 original size:21 final size:22
Alignment explanation
Indices: 6718006--6718055 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
6717996 ACTTGTGACT
*
6718006 ATTTTTGTCATCTAATTA-TTA
1 ATTTTTGTAATCTAATTATTTA
* *
6718027 ATTTTTTTAATTTAATTATTTA
1 ATTTTTGTAATCTAATTATTTA
6718049 ACTTTTT
1 A-TTTTT
6718056 TGAAATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 15 0.62
22 4 0.17
23 5 0.21
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (22 bp):
ATTTTTGTAATCTAATTATTTA
Found at i:6718054 original size:23 final size:21
Alignment explanation
Indices: 6718018--6718066 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
6718008 TTTTGTCATC
* *
6718018 TAATTATTAATTTTTTTAATT
1 TAATTATTAATTTTTTGAAAT
6718039 TAATTATTTAACTTTTTTGAAAT
1 TAATTA-TTAA-TTTTTTGAAAT
6718062 TAATT
1 TAATT
6718067 TTTTTAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 6 0.25
22 4 0.17
23 14 0.58
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TAATTATTAATTTTTTGAAAT
Found at i:6719357 original size:31 final size:31
Alignment explanation
Indices: 6719289--6719357 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
6719279 GATTAGCCCT
* * *** *
6719289 TAAATTTAGCAATTGTTCCTATATTGGGGGC
1 TAAACTTAGCAATTGTTCCCATATCAAGGCC
*
6719320 TGAACTTAGCAATTGTTCCCATATCAAGGCC
1 TAAACTTAGCAATTGTTCCCATATCAAGGCC
6719351 TAAACTT
1 TAAACTT
6719358 TGGGGTTTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (31 bp):
TAAACTTAGCAATTGTTCCCATATCAAGGCC
Found at i:6724012 original size:14 final size:14
Alignment explanation
Indices: 6723995--6724022 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6723985 AAAATAATTT
6723995 AATAAATTTAATAA
1 AATAAATTTAATAA
6724009 AATAAATTTAATAA
1 AATAAATTTAATAA
6724023 TTATTGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATAAATTTAATAA
Found at i:6740346 original size:29 final size:30
Alignment explanation
Indices: 6740287--6740344 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
6740277 TCCGAGCCTT
*
6740287 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
6740317 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
6740345 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:6740574 original size:13 final size:13
Alignment explanation
Indices: 6740556--6740587 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6740546 TTTCCAGCAA
6740556 TTATGAATTTATT
1 TTATGAATTTATT
6740569 TTATGAATTTATT
1 TTATGAATTTATT
*
6740582 TGATGA
1 TTATGA
6740588 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:6740795 original size:50 final size:50
Alignment explanation
Indices: 6740682--6740923 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
6740672 ATTTGGGTAA
* * * *
6740682 AGAGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCCTTAAGAGCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC----GAG-ACG
*
6740738 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
6740788 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
6740838 AGAGGTCCCCTATAAGACCATGTCTGGGACATGACATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
6740888 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
6740924 TTTGGCATGT
Statistics
Matches: 163, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.56
51 31 0.19
55 2 0.01
56 38 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:6740870 original size:100 final size:103
Alignment explanation
Indices: 6740682--6740931 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 103
6740672 ATTTGGGTAA
*
6740682 AGAGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCCTTAAGAGCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGAGCATGAGAGGTCCC
* * *
6740747 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGACATGGGCACC-ATCACG
* *
6740788 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GAG-ATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGAGCATGAGAGGTCCCCTA
6740850 TAAGACCATGTCTGGGACATGACATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGACATGGGCACCATCACG
* *
6740888 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
6740932 GTTATTATCA
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 40 0.30
105 2 0.02
106 39 0.30
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGAGCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGACATGGGCACCATCACG
Found at i:6743344 original size:16 final size:16
Alignment explanation
Indices: 6743323--6743391 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
6743313 TTTGGTTCGC
6743323 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6743339 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6743355 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
6743372 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6743388 TGTA
1 TGTA
6743392 ATAGCAAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:6743369 original size:33 final size:32
Alignment explanation
Indices: 6743323--6743391 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
6743313 TTTGGTTCGC
6743323 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
6743355 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
6743388 TGTA
1 TGTA
6743392 ATAGCAAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:6743647 original size:16 final size:16
Alignment explanation
Indices: 6743607--6743661 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
6743597 TTAATCATAT
*
6743607 TTAAACATA-ATTTTTA
1 TTAAA-ATATATTTTAA
6743623 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
6743638 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
6743656 -TAAAAT
1 TTAAAAT
6743662 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:6743654 original size:18 final size:17
Alignment explanation
Indices: 6743627--6743661 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6743617 TTTTTATTAA
*
6743627 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6743645 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6743662 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6743820 original size:19 final size:18
Alignment explanation
Indices: 6743745--6743821 Score: 75
Period size: 18 Copynumber: 4.2 Consensus size: 18
6743735 TTATTATTAA
*
6743745 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAATT
6743763 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAATT
* ***
6743781 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAATT
6743800 ATATGAATTTAATAAAATT
1 ATAT-AATTTAATAAAATT
6743819 ATA
1 ATA
6743822 ATATATAATA
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
17 4 0.09
18 20 0.43
19 16 0.35
20 3 0.07
21 3 0.07
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (18 bp):
ATATAATTTAATAAAATT
Found at i:6743840 original size:61 final size:61
Alignment explanation
Indices: 6743754--6743960 Score: 201
Period size: 61 Copynumber: 3.4 Consensus size: 61
6743744 AATATAATTT
* *
6743754 AATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAA
1 AATAATAATATATAATCTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAA
* * * * * **
6743815 AATTATAATATATAATACT-ATAAAA-T-ATAAT-TTAAAATAATTATTAT-TAAATATAATTT
1 AATAATAATATATAAT-CTAATAAAATTCTTAATATT-AAAT-ATTCTTATATGAATTTAATAA
* * * * *
6743874 AACAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAA
1 AATAATAATATATAATCTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAA
*
6743935 AATCATAATATATAATACT-ATAAAAT
1 AATAATAATATATAAT-CTAATAAAAT
6743961 ATAATTTAAA
Statistics
Matches: 112, Mismatches: 25, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
58 3 0.03
59 35 0.31
60 15 0.13
61 55 0.49
62 4 0.04
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (61 bp):
AATAATAATATATAATCTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAA
Found at i:6743853 original size:22 final size:23
Alignment explanation
Indices: 6743811--6743853 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
6743801 TATGAATTTA
*
6743811 ATAAAATTATAATATATAATACT
1 ATAAAATTATAATATAAAATACT
*
6743834 ATAAAA-TATAATTTAAAATA
1 ATAAAATTATAATATAAAATA
6743854 ATTATTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAAAATTATAATATAAAATACT
Found at i:6743867 original size:120 final size:120
Alignment explanation
Indices: 6743605--6744021 Score: 537
Period size: 120 Copynumber: 3.5 Consensus size: 120
6743595 ATTTAATCAT
* * *
6743605 ATTTAAACATAATTTTTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAAA-ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAAT-
* * * * * *
6743670 ATTAGCAGAAATTGTT-T-TGGTAA-TT-AT--TATTA-ACA-ATA-AATAATTTAAAAGATA
64 ATTA--A-ATATTCTTATAT-G-AATTTAATAAAATTATA-ATATATAATACTATAAAATATA
*
6743724 ATTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
6743789 TAAATATTCTTATATGAATTTAATAAAATTATAATATATAATACTATAAAATATA
66 TAAATATTCTTATATGAATTTAATAAAATTATAATATATAATACTATAAAATATA
*
6743844 ATTTAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
* * *
6743909 TAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
66 TAAATATTCTTATATGAATTTAATAAAATTATAATATATAATACTATAAAATATA
* *
6743964 ATTTAAAATAATTATTATTAAAAATATAATTTAGTAAAAATATATAATTTAATCAAAT
1 ATTTAAAATAATTATTATT--AAATATAATTTAATAAAAATATATAATTTAATAAAAT
6744022 CATTATATTC
Statistics
Matches: 269, Mismatches: 18, Indels: 19
0.88 0.06 0.06
Matches are distributed among these distances:
114 8 0.03
115 5 0.02
116 3 0.01
117 4 0.01
118 58 0.22
119 10 0.04
120 147 0.55
122 34 0.13
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (120 bp):
ATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
TAAATATTCTTATATGAATTTAATAAAATTATAATATATAATACTATAAAATATA
Found at i:6744219 original size:25 final size:25
Alignment explanation
Indices: 6744145--6744223 Score: 112
Period size: 25 Copynumber: 3.3 Consensus size: 25
6744135 ATTGCAAAAA
6744145 GAAATTACTGTAAGTTAGAGCATAT
1 GAAATTACTGTAAGTTAGAGCATAT
*
6744170 GAAATTACT-T---TTTGAAGCATAT
1 GAAATTACTGTAAGTTAG-AGCATAT
6744192 GAAATTACTGTAAGTTAGAGCATAT
1 GAAATTACTGTAAGTTAGAGCATAT
6744217 GAAATTA
1 GAAATTA
6744224 AGCAAAGATC
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.06
22 16 0.34
23 1 0.02
24 1 0.02
25 23 0.49
26 3 0.06
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.34
Consensus pattern (25 bp):
GAAATTACTGTAAGTTAGAGCATAT
Found at i:6750897 original size:20 final size:19
Alignment explanation
Indices: 6750874--6750912 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
6750864 GTTTATATAT
6750874 TATTTATATTAACAATTTAA
1 TATTTATATTAA-AATTTAA
* *
6750894 TATTTTTTTTAAAATTTAA
1 TATTTATATTAAAATTTAA
6750913 AATAATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
TATTTATATTAAAATTTAA
Found at i:6751336 original size:16 final size:18
Alignment explanation
Indices: 6751294--6751331 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
6751284 TTTTTTAAAT
6751294 TTAAAA-AATATTAAAAA
1 TTAAAATAATATTAAAAA
6751311 TTAAAATAATA-TAAAAA
1 TTAAAATAATATTAAAAA
6751328 TTAA
1 TTAA
6751332 TTAATTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TTAAAATAATATTAAAAA
Found at i:6754169 original size:4 final size:4
Alignment explanation
Indices: 6754153--6754185 Score: 57
Period size: 4 Copynumber: 8.0 Consensus size: 4
6754143 GTAAGGGCAG
6754153 CATA CATTA CATA CATA CATA CATA CATA CATA
1 CATA CA-TA CATA CATA CATA CATA CATA CATA
6754186 TGTTTTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.27
Consensus pattern (4 bp):
CATA
Found at i:6756339 original size:24 final size:24
Alignment explanation
Indices: 6756316--6756360 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
6756306 ATATTTAATA
*
6756316 ATAAATGTTGT-ATAATATAAAAT
1 ATAAATATTGTAATAATATAAAAT
*
6756339 ATAAATATTTTAATAATATAAA
1 ATAAATATTGTAATAATATAAA
6756361 TAAGAGTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (24 bp):
ATAAATATTGTAATAATATAAAAT
Found at i:6756784 original size:13 final size:13
Alignment explanation
Indices: 6756766--6756790 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6756756 CACAATCATC
6756766 TTGACACAAAAAA
1 TTGACACAAAAAA
6756779 TTGACACAAAAA
1 TTGACACAAAAA
6756791 GAAAAACAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (13 bp):
TTGACACAAAAAA
Found at i:6763135 original size:35 final size:35
Alignment explanation
Indices: 6763089--6763158 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
6763079 GAAAAAAATC
6763089 TTGTAGCTGCTCTCTCTTATCTATTTTCATTTTCT
1 TTGTAGCTGCTCTCTCTTATCTATTTTCATTTTCT
6763124 TTGTAGCTGCTCTCTCTTATCTATTTTCATTTTCT
1 TTGTAGCTGCTCTCTCTTATCTATTTTCATTTTCT
6763159 AAGTGTCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.09, T:0.57
Consensus pattern (35 bp):
TTGTAGCTGCTCTCTCTTATCTATTTTCATTTTCT
Found at i:6772835 original size:25 final size:25
Alignment explanation
Indices: 6772798--6772847 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
6772788 AAAAATACAA
* * *
6772798 TTTTATCATTTTTAATAGTTTAAAT
1 TTTTATCAATTTTAAAAGATTAAAT
*
6772823 TTTTATGAATTTTAAAAGATTAAAT
1 TTTTATCAATTTTAAAAGATTAAAT
6772848 CAAATTTGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (25 bp):
TTTTATCAATTTTAAAAGATTAAAT
Found at i:6776601 original size:39 final size:40
Alignment explanation
Indices: 6776557--6776636 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
6776547 AACTTAATCT
6776557 ATGCATTATAAACGAT-AAAAAAAAACTAATATATATATG
1 ATGCATTATAAACGATAAAAAAAAAACTAATATATATATG
6776596 ATGCATTATAAACGATAAAAAAAAAACTAATATATATATG
1 ATGCATTATAAACGATAAAAAAAAAACTAATATATATATG
6776636 A
1 A
6776637 GAAGAGATGC
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 16 0.40
40 24 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.28
Consensus pattern (40 bp):
ATGCATTATAAACGATAAAAAAAAAACTAATATATATATG
Found at i:6777058 original size:44 final size:44
Alignment explanation
Indices: 6777005--6777094 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
6776995 GTTACTGGGT
6777005 TCAAACTTCAAACCTTCTAAATACTGCCTTTTAAAGTTAATTAC
1 TCAAACTTCAAACCTTCTAAATACTGCCTTTTAAAGTTAATTAC
6777049 TCAAACTTCAAACCTTCTAAATACTGCCTTTTAAAGTTAATTAC
1 TCAAACTTCAAACCTTCTAAATACTGCCTTTTAAAGTTAATTAC
6777093 TC
1 TC
6777095 GAATCAATTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.37
Consensus pattern (44 bp):
TCAAACTTCAAACCTTCTAAATACTGCCTTTTAAAGTTAATTAC
Found at i:6779015 original size:5 final size:5
Alignment explanation
Indices: 6779005--6779041 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
6778995 TTCATCGTAC
*
6779005 AAATA AAATA AAATA AAATA AAAT- AAATA CAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAA
6779042 AACAAGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:6779025 original size:15 final size:14
Alignment explanation
Indices: 6779005--6779041 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
6778995 TTCATCGTAC
6779005 AAATAAAATAAAATA
1 AAATAAAAT-AAATA
6779020 AAATAAAATAAATA
1 AAATAAAATAAATA
*
6779034 CAATAAAA
1 AAATAAAA
6779042 AACAAGATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAATA
Found at i:6789042 original size:26 final size:26
Alignment explanation
Indices: 6789013--6789064 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
6789003 TTTTTGGTTT
6789013 GGCATATACTAAGGATAATTTGACTA
1 GGCATATACTAAGGATAATTTGACTA
6789039 GGCATATACTAAGGATAATTTGACTA
1 GGCATATACTAAGGATAATTTGACTA
6789065 TGGTTTGCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (26 bp):
GGCATATACTAAGGATAATTTGACTA
Found at i:6794775 original size:12 final size:12
Alignment explanation
Indices: 6794758--6794784 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6794748 AAGTACCCAA
6794758 ATATATTTATAT
1 ATATATTTATAT
6794770 ATATATTTATAT
1 ATATATTTATAT
6794782 ATA
1 ATA
6794785 AGTATATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATATATTTATAT
Found at i:6794796 original size:4 final size:4
Alignment explanation
Indices: 6794789--6794828 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
6794779 TATATAAGTA
*
6794789 TATG TATG CATG TA-- TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
6794829 GGGATTCCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
4 30 0.94
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:6794803 original size:14 final size:14
Alignment explanation
Indices: 6794786--6794817 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
6794776 TTATATATAA
6794786 GTATATGTATGCAT
1 GTATATGTATGCAT
*
6794800 GTATATGTATGTAT
1 GTATATGTATGCAT
6794814 GTAT
1 GTAT
6794818 GTATGTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.22, T:0.47
Consensus pattern (14 bp):
GTATATGTATGCAT
Found at i:6808540 original size:13 final size:13
Alignment explanation
Indices: 6808507--6808531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6808497 TTTGATTCCC
6808507 AGAAAAAAAGAAA
1 AGAAAAAAAGAAA
6808520 AGAAAAAAAGAA
1 AGAAAAAAAGAA
6808532 CAAATAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AGAAAAAAAGAAA
Found at i:6808827 original size:3 final size:3
Alignment explanation
Indices: 6808819--6808843 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6808809 TTGTAGTTTC
6808819 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
6808844 AAGTGAAGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:6817447 original size:38 final size:38
Alignment explanation
Indices: 6817391--6817469 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
6817381 TCTAGCCATT
6817391 TAAACATTTGTACCTAAATTGCTTGGACAACTTGAATC
1 TAAACATTTGTACCTAAATTGCTTGGACAACTTGAATC
*
6817429 TAAACATTTGTACTTAAATTGCTTGGACAACTTGAATC
1 TAAACATTTGTACCTAAATTGCTTGGACAACTTGAATC
6817467 TAA
1 TAA
6817470 CATGTTAGGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (38 bp):
TAAACATTTGTACCTAAATTGCTTGGACAACTTGAATC
Found at i:6817694 original size:19 final size:19
Alignment explanation
Indices: 6817670--6817708 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
6817660 AAGGAAGAAA
6817670 GATCTTTGATCCAATGGAT
1 GATCTTTGATCCAATGGAT
6817689 GATCTTTGATCCAATGGAT
1 GATCTTTGATCCAATGGAT
6817708 G
1 G
6817709 CTTGAAAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (19 bp):
GATCTTTGATCCAATGGAT
Found at i:6818272 original size:26 final size:25
Alignment explanation
Indices: 6818243--6818306 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
6818233 TTATAGATTA
**
6818243 TTAATTTAAATTTTATTATTAAATAT
1 TTAATTTAAATTTTAAGATTAAA-AT
*
6818269 TTAATTCAAATATTTAAGATTAAAAT
1 TTAATTTAAAT-TTTAAGATTAAAAT
6818295 TT-ATTATAAATT
1 TTAATT-TAAATT
6818307 AAATTTATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
25 4 0.12
26 18 0.56
27 10 0.31
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (25 bp):
TTAATTTAAATTTTAAGATTAAAAT
Found at i:6819851 original size:53 final size:53
Alignment explanation
Indices: 6819770--6819915 Score: 186
Period size: 53 Copynumber: 2.7 Consensus size: 53
6819760 CTTACACGGT
* * *
6819770 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGAAATTACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGAAATCACATTA
* * *
6819825 TCACATTATACCGATGTCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGAAATCACATTA
**
6819878 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTA
6819916 AACGGGCGCA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 1 0.01
53 73 0.90
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGAAATCACATTA
Found at i:6820994 original size:61 final size:61
Alignment explanation
Indices: 6820929--6821052 Score: 230
Period size: 61 Copynumber: 2.0 Consensus size: 61
6820919 ATAGGGGTAT
*
6820929 TTTGTTCTTTGAAAGGGGATGGATTACTTTTAGATTCTCACTTTAATTTGGAATTGGATTA
1 TTTGTTCTTTGAAAGGGGATGGATTACTTTTAGATTCCCACTTTAATTTGGAATTGGATTA
*
6820990 TTTGTTCTTTGAAAGGGGATGGATTACTTTTGGATTCCCACTTTAATTTGGAATTGGATTA
1 TTTGTTCTTTGAAAGGGGATGGATTACTTTTAGATTCCCACTTTAATTTGGAATTGGATTA
6821051 TT
1 TT
6821053 CTCTCTTTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.23, C:0.09, G:0.22, T:0.46
Consensus pattern (61 bp):
TTTGTTCTTTGAAAGGGGATGGATTACTTTTAGATTCCCACTTTAATTTGGAATTGGATTA
Found at i:6821536 original size:14 final size:15
Alignment explanation
Indices: 6821504--6821537 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
6821494 ATATTATTAT
*
6821504 TATTTATCTAATTTT
1 TATTTATCTAATTTA
6821519 TATTTATC-AATTTA
1 TATTTATCTAATTTA
6821533 TATTT
1 TATTT
6821538 CTACTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTTATCTAATTTA
Found at i:6821545 original size:23 final size:23
Alignment explanation
Indices: 6821522--6821579 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
6821512 TAATTTTTAT
6821522 TTATCA-ATTTATATTTCTACTA
1 TTATCATATTTATATTTCTACTA
* *
6821544 TTATTATATTTCTATTTCTA-T-
1 TTATCATATTTATATTTCTACTA
*
6821565 TTAT-ATATTAATATT
1 TTATCATATTTATATT
6821580 ATTTTTATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 9 0.29
21 4 0.13
22 6 0.19
23 12 0.39
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (23 bp):
TTATCATATTTATATTTCTACTA
Found at i:6821565 original size:17 final size:18
Alignment explanation
Indices: 6821528--6821588 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 18
6821518 TTATTTATCA
6821528 ATTTATATTTCTACTATT
1 ATTTATATTTCTACTATT
*
6821546 A-TTATATTTCTA-TTTCT
1 ATTTATATTTCTACTAT-T
* *
6821563 ATTTATATAT-TAATATT
1 ATTTATATTTCTACTATT
*
6821580 ATTTTTATT
1 ATTTATATT
6821589 GTTATTTTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
16 2 0.06
17 23 0.66
18 10 0.29
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTATATTTCTACTATT
Found at i:6821709 original size:3 final size:3
Alignment explanation
Indices: 6821701--6821787 Score: 174
Period size: 3 Copynumber: 29.0 Consensus size: 3
6821691 TTAAAACTTG
6821701 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6821749 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6821788 ATTTTTCCTT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:6821858 original size:37 final size:38
Alignment explanation
Indices: 6821811--6821884 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 38
6821801 GTATTTATTC
** *
6821811 ATTTATTTTATTTCCATTTTTTTACA-AATTTCTATTTT
1 ATTTATTTTATTT-CAGATTTTTACATAATATCTATTTT
6821849 ATTTA-TTTATTTCAGATTTTTACATAATATCTATTT
1 ATTTATTTTATTTCAGATTTTTACATAATATCTATTT
6821885 CCAACTCTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 10 0.31
37 17 0.53
38 5 0.16
ACGTcount: A:0.27, C:0.09, G:0.01, T:0.62
Consensus pattern (38 bp):
ATTTATTTTATTTCAGATTTTTACATAATATCTATTTT
Found at i:6821860 original size:19 final size:19
Alignment explanation
Indices: 6821811--6821861 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
6821801 GTATTTATTC
6821811 ATTTATTTTATTTCCATTTT
1 ATTTA-TTTATTTCCATTTT
*** *
6821831 -TTTACAAATTTCTATTTT
1 ATTTATTTATTTCCATTTT
6821849 ATTTATTTATTTC
1 ATTTATTTATTTC
6821862 AGATTTTTAC
Statistics
Matches: 23, Mismatches: 7, Indels: 3
0.70 0.21 0.09
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTATTTATTTCCATTTT
Found at i:6824869 original size:139 final size:136
Alignment explanation
Indices: 6824612--6825009 Score: 370
Period size: 139 Copynumber: 2.8 Consensus size: 136
6824602 TCGAAACATC
* * ***
6824612 TTAACAATGCATACATAGATGCATTAAAAACTTGCATCAGTTCCTAAACT-CGAAAGAAAGA-GG
1 TTAACAAAGCACACATAGATGCATT-AAAACTCATATCAGTTCCTAAACTACGAAAGAAA-ACGG
* * * * * * *
6824675 AAACCAAATGATACACAAGTATACTCATTAATAAAATTAAATTCACAAGACAAAGA-AAGGCTAG
64 AAATCAAAAGACACACAAGTATACTTATTAATAAAAATAAATTCACAAAACAAAGAGAA-GCTAA
* *
6824739 TCGAGACACC
128 TCAAGACA-A
* * * *
6824749 TTAACAAGGTACACATAGATGCATTAGAAACTCATATCCGTTCCTAAACTTACCAAAGAAAACGG
1 TTAACAAAGCACACATAGATGCATTA-AAACTCATATCAGTTCCTAAAC-TACGAAAGAAAACGG
* *
6824814 AAATCAAAAGACACATAAGTATACTTATTAATAAAAATAAATTCACAAAAGAAAGAGAAGCTAAT
64 AAATCAAAAGACACACAAGTATACTTATTAATAAAAATAAATTCACAAAACAAAGAGAAGCTAAT
6824879 CAAGACAA
129 CAAGACAA
* ** * *
6824887 TTTACAAAGCATGCATAGATGCATTAAAAGCTCATATCGGTTCCTAAACACACGAAAGAAAGCAA
1 TTAACAAAGCACACATAGATGCATTAAAA-CTCATATCAGTTCCTAAAC-TAC----GAAAG--A
** * * *
6824952 AAAGCAAAAATCAAAGGGCACACAAGTATACTTATTAATAAAAATAAATTCATAAAAC
58 AAA-CGGAAATCAAAAGACACACAAGTATACTTATTAATAAAAATAAATTCACAAAAC
6825010 CTCTCTATCC
Statistics
Matches: 213, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
136 1 0.00
137 43 0.20
138 43 0.20
139 69 0.32
140 2 0.01
142 4 0.02
144 4 0.02
145 47 0.22
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (136 bp):
TTAACAAAGCACACATAGATGCATTAAAACTCATATCAGTTCCTAAACTACGAAAGAAAACGGAA
ATCAAAAGACACACAAGTATACTTATTAATAAAAATAAATTCACAAAACAAAGAGAAGCTAATCA
AGACAA
Found at i:6825238 original size:23 final size:23
Alignment explanation
Indices: 6825208--6825278 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 23
6825198 TATTATCGTT
6825208 ATTTAAAAAAACAATACATTCAA
1 ATTTAAAAAAACAATACATTCAA
** *
6825231 ATTT---AAAATTAT-CATT--T
1 ATTTAAAAAAACAATACATTCAA
6825248 ATTTAAAAAAACAATACATTCAA
1 ATTTAAAAAAACAATACATTCAA
6825271 ATTTAAAA
1 ATTTAAAA
6825279 TTATCATTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
17 4 0.11
19 4 0.11
20 12 0.33
21 4 0.11
23 12 0.33
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (23 bp):
ATTTAAAAAAACAATACATTCAA
Found at i:6825285 original size:40 final size:40
Alignment explanation
Indices: 6825206--6825286 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
6825196 TTTATTATCG
6825206 TTATTTAAAAAAACAATACATTCAAATTTAAAATTATCAT
1 TTATTTAAAAAAACAATACATTCAAATTTAAAATTATCAT
6825246 TTATTTAAAAAAACAATACATTCAAATTTAAAATTATCAT
1 TTATTTAAAAAAACAATACATTCAAATTTAAAATTATCAT
6825286 T
1 T
6825287 CTCTTTTGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (40 bp):
TTATTTAAAAAAACAATACATTCAAATTTAAAATTATCAT
Found at i:6827988 original size:62 final size:62
Alignment explanation
Indices: 6827855--6827989 Score: 148
Period size: 62 Copynumber: 2.2 Consensus size: 62
6827845 ACTTCGATCT
* * ** **
6827855 TTTCGATGATGCACTAGGTGCCAGTATGATATAAATAGTGCTGAGCGTTAATTACTTCAGGC
1 TTTCGATGATGCACTAAGTGCAAGTATGATATAAATAGCACTGAGCGCAAATTACTTCAGGC
* * *
6827917 TTTCCGATGATGCATTAAGTGCAAGTATGATAT-GATAGCACTGAGCGCAAATTATTTC-GGAC
1 TTT-CGATGATGCACTAAGTGCAAGTATGATATAAATAGCACTGAGCGCAAATTACTTCAGG-C
6827979 TTTCTGATGAT
1 TTTC-GATGAT
6827990 ACTTTGAGGT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
61 3 0.05
62 32 0.52
63 26 0.43
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (62 bp):
TTTCGATGATGCACTAAGTGCAAGTATGATATAAATAGCACTGAGCGCAAATTACTTCAGGC
Found at i:6828387 original size:22 final size:22
Alignment explanation
Indices: 6828359--6828400 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
6828349 TATAATTTAT
6828359 TTTTTAATTATTAAAA-TAATCA
1 TTTTTAA-TATTAAAACTAATCA
6828381 TTTTTAATATTAAAACTAAT
1 TTTTTAATATTAAAACTAAT
6828401 AAAATTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTTTAATATTAAAACTAATCA
Found at i:6828817 original size:30 final size:30
Alignment explanation
Indices: 6828768--6828833 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
6828758 GTTAGGATAA
* * *
6828768 AAAATTTAAAATTCGAAAAGTTCAA-AATT
1 AAAATTTAAAATTCAAAAAGTACAATAACT
*
6828797 AAAATTTATCAATTCAAAAAGTACAATAACT
1 AAAATTTA-AAATTCAAAAAGTACAATAACT
6828828 AAAATT
1 AAAATT
6828834 GACCAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 8 0.26
30 14 0.45
31 9 0.29
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (30 bp):
AAAATTTAAAATTCAAAAAGTACAATAACT
Found at i:6833780 original size:3 final size:3
Alignment explanation
Indices: 6833761--6833810 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
6833751 TTCTTCTTCT
* * * *
6833761 TCA TCA ACA TCA CCA TCA TCA TCA TCA CCA TCA TCA TCA TCA CCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
6833809 TC
1 TC
6833811 GTTTTCTTCA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.34, C:0.40, G:0.00, T:0.26
Consensus pattern (3 bp):
TCA
Found at i:6833781 original size:15 final size:15
Alignment explanation
Indices: 6833761--6833810 Score: 91
Period size: 15 Copynumber: 3.3 Consensus size: 15
6833751 TTCTTCTTCT
*
6833761 TCATCAACATCACCA
1 TCATCATCATCACCA
6833776 TCATCATCATCACCA
1 TCATCATCATCACCA
6833791 TCATCATCATCACCA
1 TCATCATCATCACCA
6833806 TCATC
1 TCATC
6833811 GTTTTCTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.34, C:0.40, G:0.00, T:0.26
Consensus pattern (15 bp):
TCATCATCATCACCA
Found at i:6838746 original size:21 final size:21
Alignment explanation
Indices: 6838720--6838760 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6838710 ATCTGCTCAA
* *
6838720 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
6838741 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
6838761 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:6841694 original size:11 final size:11
Alignment explanation
Indices: 6841678--6841702 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6841668 AATATTTTTC
6841678 AATAAATTAAA
1 AATAAATTAAA
6841689 AATAAATTAAA
1 AATAAATTAAA
6841700 AAT
1 AAT
6841703 TATACTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AATAAATTAAA
Found at i:6847441 original size:26 final size:26
Alignment explanation
Indices: 6847412--6847467 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
6847402 ACACATAAGC
6847412 TAATAGCTAAGCTTACGGAATGACCA
1 TAATAGCTAAGCTTACGGAATGACCA
*
6847438 TAATAGCTAAGCTTATGGAATGACCA
1 TAATAGCTAAGCTTACGGAATGACCA
6847464 TAAT
1 TAAT
6847468 CTGATGTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (26 bp):
TAATAGCTAAGCTTACGGAATGACCA
Found at i:6854036 original size:26 final size:24
Alignment explanation
Indices: 6854006--6854054 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
6853996 AAATAAAAAA
*
6854006 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
6854032 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
6854055 AAAATAATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 3 0.14
26 13 0.59
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:6855008 original size:43 final size:44
Alignment explanation
Indices: 6854945--6855031 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 44
6854935 ATTCACCAAG
* * *
6854945 CCTTAAACCCCTAAGTAGTAGGGTAACAGG-TTAAATTTACAGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGA
* *
6854988 CCTTAACCCCCTAAGCAGTAGGGTAATAGGCTGAAAATTACAGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGA
6855032 TCTCGTCTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
43 27 0.71
44 11 0.29
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (44 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGA
Found at i:6855163 original size:43 final size:44
Alignment explanation
Indices: 6855106--6855189 Score: 125
Period size: 43 Copynumber: 1.9 Consensus size: 44
6855096 CGAAGCAGAT
* *
6855106 TGAAGTCACTAGTCTTATCTCCCTGAAGT-GCAATGGAGCAAAC
1 TGAAGTCACAAGTCTCATCTCCCTGAAGTCGCAATGGAGCAAAC
* *
6855149 TGAAGTTACAAGTCTCATCTCCCTGAAGTCGCAGTGGAGCA
1 TGAAGTCACAAGTCTCATCTCCCTGAAGTCGCAATGGAGCA
6855190 GACTAAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 26 0.72
44 10 0.28
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (44 bp):
TGAAGTCACAAGTCTCATCTCCCTGAAGTCGCAATGGAGCAAAC
Found at i:6855357 original size:44 final size:43
Alignment explanation
Indices: 6855213--6855547 Score: 152
Period size: 44 Copynumber: 7.7 Consensus size: 43
6855203 GACCTTAAAC
* * *
6855213 CCCCTAAGCAGTAGGGTAAC-AGGTTAA-ATTCACAGATCTTAT
1 CCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTA-AGATCTTAT
* * * *** * *
6855255 CACCCTAAGCAGTAGGGAAAC-AGATCAA-AGGCAACGAGCTTTAA
1 C-CCCTAAGCAGTAGGGTAACAAGCTGAAGATTTAA-GATC-TTAT
6855299 CCCCTTAAGCAGTAGGGTAACAAGCTGAAG-TTTATAGATCTTAT
1 CCCC-TAAGCAGTAGGGTAACAAGCTGAAGATTTA-AGATCTTAT
* * * *** * * *
6855343 CGCCCTAAGTAGTAGGGAAAC-AGATCGAAGACGGAGGGTCTTAAA
1 C-CCCTAAGCAGTAGGGTAACAAGCT-GAAGATTTAAGATCTT-AT
*
6855388 CCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAT
1 CCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTA-AGATCTTAT
* * * * *
6855432 CACCCTAAGCAGTAGGG-AAGC-AGATCGAAGA-TGATGAGCTTTGAC
1 C-CCCTAAGCAGTAGGGTAA-CAAGCT-GAAGATTTAAGATC-TT-AT
* * *
6855477 CCCCTAAGCAGTAGGGTAACAAGC-CAA-ATTTACAGACCTTAA
1 CCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTA-AGATCTTAT
* * *
6855519 CCCTCTAAGCAGAAGGGTAATAGGCTGAA
1 CCC-CTAAGCAGTAGGGTAACAAGCTGAA
6855548 AATTACAGAT
Statistics
Matches: 219, Mismatches: 50, Indels: 46
0.70 0.16 0.15
Matches are distributed among these distances:
42 7 0.03
43 62 0.28
44 100 0.46
45 49 0.22
46 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (43 bp):
CCCCTAAGCAGTAGGGTAACAAGCTGAAGATTTAAGATCTTAT
Found at i:6855358 original size:88 final size:87
Alignment explanation
Indices: 6855210--6855535 Score: 372
Period size: 88 Copynumber: 3.7 Consensus size: 87
6855200 ATAGACCTTA
* * * *
6855210 AACCCCCTAAGCAGTAGGGTAAC-AGGTTAAATTCACAGATCTTATCACCCTAAGCAGTAGGGAA
1 AACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTACAGATCTTATCACCCTAAGCAGTAGGGAA
* * *
6855274 ACAGATCAAAGGCAACGAGCTTT
66 ACAGATCGAAGACGA-GAGCTTT
* * * *
6855297 AACCCCTTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCGCCCTAAGTAGTAGGGAA
1 AACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTACAGATCTTATCACCCTAAGCAGTAGGGAA
*
6855362 ACAGATCGAAGACG-GAGGGTCTT
66 ACAGATCGAAGACGAGA-GCT-TT
* *
6855385 AAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCACCCTAAGCAGTAGGGA
1 AACCCCCTAAGCAGTAGGGTAACAAGCTGAAG-TTTACAGATCTTATCACCCTAAGCAGTAGGGA
* *
6855450 AGCAGATCGAAGATGATGAGCTTT
65 AACAGATCGAAGACGA-GAGCTTT
* * * * * *
6855474 GACCCCCTAAGCAGTAGGGTAACAAGC-CAAATTTACAGACCTTAAC-CCTCTAAGCAGAAGGG
1 AACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTACAGATCTTATCACC-CTAAGCAGTAGGG
6855536 TAATAGGCTG
Statistics
Matches: 203, Mismatches: 29, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
86 4 0.02
87 49 0.24
88 78 0.38
89 68 0.33
90 2 0.01
91 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (87 bp):
AACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTACAGATCTTATCACCCTAAGCAGTAGGGAA
ACAGATCGAAGACGAGAGCTTT
Found at i:6856301 original size:42 final size:42
Alignment explanation
Indices: 6856246--6856374 Score: 222
Period size: 42 Copynumber: 3.1 Consensus size: 42
6856236 GAGCAGTTAA
* *
6856246 AAGCCACAACAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
1 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
*
6856288 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTAATCG
1 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
*
6856330 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATTG
1 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
6856372 AAG
1 AAG
6856375 TCACATGTCT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (42 bp):
AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
Found at i:6856372 original size:21 final size:21
Alignment explanation
Indices: 6856264--6856375 Score: 57
Period size: 21 Copynumber: 5.3 Consensus size: 21
6856254 ACAGATCTCC
*
6856264 TTGAAGTTTCAGTGGAATTGA
1 TTGAAGTTTCAGTGGAATTCA
* * * ** *
6856285 TCGAAGCTACAGCAG-ATCTCC
1 TTGAAGTTTCAGTGGAAT-TCA
*
6856306 TTGAAGTTTCAGTGGAATTAA
1 TTGAAGTTTCAGTGGAATTCA
* * * ** *
6856327 TCGAAGCTACAGCAG-ATCTCC
1 TTGAAGTTTCAGTGGAAT-TCA
*
6856348 TTGAAGTTTCAGTGGAATTGA
1 TTGAAGTTTCAGTGGAATTCA
6856369 TTGAAGT
1 TTGAAGT
6856376 CACATGTCTT
Statistics
Matches: 59, Mismatches: 28, Indels: 8
0.62 0.29 0.08
Matches are distributed among these distances:
20 4 0.07
21 51 0.86
22 4 0.07
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (21 bp):
TTGAAGTTTCAGTGGAATTCA
Found at i:6856694 original size:12 final size:12
Alignment explanation
Indices: 6856677--6856701 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6856667 ACCCAAAACC
6856677 CTTAGCCCAAAA
1 CTTAGCCCAAAA
6856689 CTTAGCCCAAAA
1 CTTAGCCCAAAA
6856701 C
1 C
6856702 ACTAACCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTTAGCCCAAAA
Found at i:6857881 original size:20 final size:22
Alignment explanation
Indices: 6857842--6857882 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
6857832 TAATATTACA
*
6857842 TATATATATTTTATAGTTGTTT
1 TATATATATTATATAGTTGTTT
6857864 TATATATATTAT-TA-TTGTT
1 TATATATATTATATAGTTGTT
6857883 CCTAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 2 0.11
22 11 0.61
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.63
Consensus pattern (22 bp):
TATATATATTATATAGTTGTTT
Found at i:6859080 original size:11 final size:11
Alignment explanation
Indices: 6859064--6859096 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
6859054 AGAGTTTTTT
6859064 GGCCCGGGCCC
1 GGCCCGGGCCC
6859075 GGCCCGGGCCC
1 GGCCCGGGCCC
6859086 GGCCC-GGCCC
1 GGCCCGGGCCC
6859096 G
1 G
6859097 AATTATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.00, C:0.55, G:0.45, T:0.00
Consensus pattern (11 bp):
GGCCCGGGCCC
Found at i:6859142 original size:15 final size:16
Alignment explanation
Indices: 6859122--6859154 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
6859112 TATATATATT
6859122 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
6859137 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
6859154 T
1 T
6859155 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:6859227 original size:21 final size:22
Alignment explanation
Indices: 6859201--6859259 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
6859191 GTTTTAAGAA
*
6859201 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
6859222 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
6859244 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
6859260 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:6859290 original size:25 final size:26
Alignment explanation
Indices: 6859230--6859278 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
6859220 ATTTGTTTTA
*
6859230 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
6859254 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
6859279 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:6866193 original size:36 final size:36
Alignment explanation
Indices: 6866146--6866214 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
6866136 CATTATTGAC
* *
6866146 ATGGCCTGCCATTTGTCTGCAGAATATAGTGATGTG
1 ATGGCCTGCCATTCGTCTGCAGAACATAGTGATGTG
6866182 ATGGCCTGCCATTCGTCTGCAGAACATAGTGAT
1 ATGGCCTGCCATTCGTCTGCAGAACATAGTGAT
6866215 ATGAGCTTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (36 bp):
ATGGCCTGCCATTCGTCTGCAGAACATAGTGATGTG
Found at i:6867030 original size:16 final size:15
Alignment explanation
Indices: 6867009--6867056 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
6866999 GATGTGAATA
6867009 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
6867025 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
6867040 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
6867056 A
1 A
6867057 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:6867032 original size:24 final size:24
Alignment explanation
Indices: 6867005--6867060 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
6866995 TAATGATGTG
*
6867005 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
6867029 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
6867053 AATAATAA
1 AATAATAA
6867061 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:6867039 original size:8 final size:8
Alignment explanation
Indices: 6867005--6867056 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
6866995 TAATGATGTG
*
6867005 AATAATAA
1 AATATTAA
6867013 AATATATAA
1 AATAT-TAA
6867022 AATA-TAA
1 AATATTAA
6867029 AATATTAA
1 AATATTAA
*
6867037 AATATCAA
1 AATATTAA
*
6867045 AATATTAG
1 AATATTAA
6867053 AATA
1 AATA
6867057 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:6867272 original size:22 final size:24
Alignment explanation
Indices: 6867209--6867273 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
6867199 CGTGATAATA
*
6867209 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
6867234 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
6867257 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
6867274 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:6867298 original size:30 final size:29
Alignment explanation
Indices: 6867262--6867329 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
6867252 TATAGTTAAG
*
6867262 ATATATACATAAGATAACATGTAAAAATAT
1 ATATATAAATAAGATAACAT-TAAAAATAT
* * *
6867292 ATATATAAATAATATAATATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAAATAT
*
6867321 ATACATAAA
1 ATATATAAA
6867330 ATAGTATAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAAATAT
Found at i:6867315 original size:77 final size:77
Alignment explanation
Indices: 6867223--6867369 Score: 188
Period size: 77 Copynumber: 1.9 Consensus size: 77
6867213 AAATATGTAC
* * * *
6867223 ATAATATAGTGTTAAAAATACATACATAATATAGT-TAAGATATATACATAAGATAACATGTAAA
1 ATAATATAATATTAAAAATACATACATAAAATAGTATAAGATATATACATAAGATAAAAT-TAAA
6867287 AATATATATATAA
65 AATATATATATAA
* * * * * *
6867300 ATAATATAATATTAAAGATATATACATAAAATAGTATAATATATATACGTAATATAAAATTTAAA
1 ATAATATAATATTAAAAATACATACATAAAATAGTATAAGATATATACATAAGATAAAATTAAAA
6867365 ATATA
66 ATATA
6867370 CCTAATATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
77 39 0.66
78 20 0.34
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (77 bp):
ATAATATAATATTAAAAATACATACATAAAATAGTATAAGATATATACATAAGATAAAATTAAAA
ATATATATATAA
Found at i:6867320 original size:25 final size:24
Alignment explanation
Indices: 6867203--6867421 Score: 103
Period size: 23 Copynumber: 9.0 Consensus size: 24
6867193 TAAATACGTG
* *
6867203 ATAATATTAAAAATATGTACATAAT
1 ATAATATT-AAGATATATACATAAT
* * * *
6867228 ATAGTGTTAAAAATACATACATAAT
1 ATAATATT-AAGATATATACATAAT
* *
6867253 AT-A-GTTAAGATATATACATAAG
1 ATAATATTAAGATATATACATAAT
* * *
6867275 ATAACATGTAAAAATATATATATAAATAAT
1 ATAATAT-T----A-AGATATATACATAAT
*
6867305 ATAATATTAAAGATATATACATAAA
1 ATAATATT-AAGATATATACATAAT
* * *
6867330 ATAGTA-TAATATATATACGTAAT
1 ATAATATTAAGATATATACATAAT
* *
6867353 ATAAAATTTAA-A-ATATACCTAAT
1 ATAATA-TTAAGATATATACATAAT
* * *
6867376 ATATTA-AAAGA-ATATATATAAT
1 ATAATATTAAGATATATACATAAT
*
6867398 ATAATATTAAGAAATATA-ATAAT
1 ATAATATTAAGATATATACATAAT
6867421 A
1 A
6867422 ACAAAAAAAA
Statistics
Matches: 151, Mismatches: 30, Indels: 28
0.72 0.14 0.13
Matches are distributed among these distances:
21 2 0.01
22 30 0.20
23 45 0.30
24 8 0.05
25 44 0.29
26 2 0.01
29 2 0.01
30 18 0.12
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.34
Consensus pattern (24 bp):
ATAATATTAAGATATATACATAAT
Found at i:6868057 original size:30 final size:30
Alignment explanation
Indices: 6867907--6868081 Score: 237
Period size: 30 Copynumber: 5.8 Consensus size: 30
6867897 TAGGTACAAG
* *
6867907 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
6867937 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
6867967 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
6867997 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
6868027 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
6868057 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
6868082 TGAGAAAAGT
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
29 2 0.02
30 129 0.98
ACGTcount: A:0.21, C:0.04, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:6868951 original size:77 final size:77
Alignment explanation
Indices: 6868794--6869045 Score: 375
Period size: 77 Copynumber: 3.3 Consensus size: 77
6868784 ATGTAAACCC
* *
6868794 AAGGCTCAACTCACATCTCGCAATATAAGTTGA--TTTTTGAAAAGCAGAAATTGAAAAT-GCCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAG-CT
** * *
6868856 CAGCGTGTGACCC
65 CAGCACGTGAGCA
*
6868869 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
6868934 AGCACGTGAGCA
66 AGCACGTGAGCA
* * *
6868946 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAATGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
6869011 AGCACGTGAGCA
66 AGCACGTGAGCA
*
6869023 AAGGCTCAACTCACTTCTCGCAA
1 AAGGCTCAACTCACCTCTCGCAA
6869046 AAGTAGATTT
Statistics
Matches: 161, Mismatches: 13, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
75 30 0.19
77 130 0.81
78 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (77 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
AGCACGTGAGCA
Found at i:6869169 original size:14 final size:14
Alignment explanation
Indices: 6869136--6869169 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6869126 ATAAATTGAA
*
6869136 AAAAAACAGAAATT
1 AAAAAGCAGAAATT
*
6869150 GAAAAGCAGAAATT
1 AAAAAGCAGAAATT
6869164 AAAAAG
1 AAAAAG
6869170 ACCTCAGCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.68, C:0.06, G:0.15, T:0.12
Consensus pattern (14 bp):
AAAAAGCAGAAATT
Found at i:6869307 original size:75 final size:75
Alignment explanation
Indices: 6869148--6869389 Score: 308
Period size: 76 Copynumber: 3.2 Consensus size: 75
6869138 AAAACAGAAA
* * ** *
6869148 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
*
6869213 GAGTT-A-ATTT
64 GAGTTGATTTTT
* * * * *
6869223 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACATTTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
6869288 GTTGATTTTT
66 GTTGATTTTT
*
6869298 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
6869363 AGTTGATTTTT
65 AGTTGATTTTT
* **
6869374 TTTACGAACAGAAATT
1 TTGAAAAACAGAAATT
6869390 GAAGAACAGA
Statistics
Matches: 144, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
73 33 0.23
74 1 0.01
75 43 0.30
76 67 0.47
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (75 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:6869398 original size:14 final size:14
Alignment explanation
Indices: 6869379--6869406 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6869369 TTTTTTTTAC
6869379 GAACAGAAATTGAA
1 GAACAGAAATTGAA
6869393 GAACAGAAATTGAA
1 GAACAGAAATTGAA
6869407 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:6869525 original size:73 final size:74
Alignment explanation
Indices: 6869388--6869556 Score: 223
Period size: 73 Copynumber: 2.3 Consensus size: 74
6869378 CGAACAGAAA
* * *
6869388 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGATGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATAT
6869453 GAGTTAATTT
65 GAGTTAATTT
* ** * *
6869463 TTGACAAACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTTTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
*
6869527 AGTTGATTT
66 AGTTAATTT
* *
6869536 TTGAAAAATATAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
6869557 AATAGAAATT
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
73 55 0.68
75 26 0.32
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTT
Found at i:6869555 original size:14 final size:14
Alignment explanation
Indices: 6869536--6869585 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
6869526 GAGTTGATTT
*
6869536 TTGAAAAATATAAA
1 TTGAAAAATAGAAA
6869550 TTGAAAAAATAGAAA
1 TTG-AAAAATAGAAA
**
6869565 TTGAAAAGCAGAAA
1 TTGAAAAATAGAAA
6869579 TT-AAAAA
1 TTGAAAAA
6869586 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 14 0.45
15 13 0.42
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.22
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:6869559 original size:15 final size:15
Alignment explanation
Indices: 6869539--6869571 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
6869529 TTGATTTTTG
*
6869539 AAAAATATAAATTGA
1 AAAAATAGAAATTGA
6869554 AAAAATAGAAATTGA
1 AAAAATAGAAATTGA
6869569 AAA
1 AAA
6869572 GCAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATAGAAATTGA
Found at i:6869695 original size:78 final size:75
Alignment explanation
Indices: 6869565--6869806 Score: 298
Period size: 78 Copynumber: 3.2 Consensus size: 75
6869555 AAAATAGAAA
* * * *
6869565 TTGAAAAGCAGAAATT-AAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATA
6869629 TGAGTTGATTTTT
64 TGAGTTGA-TTTT
* * *
6869642 TTGACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATA
6869707 TGAGTTGATTTT
64 TGAGTTGATTTT
* *
6869719 TTGAAAAATAGAAATTG-AAAACACCTCAGCATGT-G--AGGCTCAACTCACCTCTTGCAATATG
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATG
*
6869780 AGTTG-GTTT
66 AGTTGATTTT
*
6869789 TTGAAAAACATAAATTGA
1 TTGAAAAACAGAAATTGA
6869807 GCAGAAATTG
Statistics
Matches: 147, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
70 18 0.12
71 30 0.20
74 1 0.01
76 15 0.10
77 33 0.22
78 50 0.34
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTT
Found at i:6869894 original size:71 final size:71
Alignment explanation
Indices: 6869811--6869948 Score: 222
Period size: 71 Copynumber: 1.9 Consensus size: 71
6869801 AATTGAGCAG
* *
6869811 AAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCAACTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCAACTCTCACAATATGAGTTGATTTTTT
6869876 GATGAT
66 GATGAT
* * * *
6869882 AAATTGAAAATACCTTAATGTGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCAACTCTCACAATATGAGTTGATTTTTT
6869947 GA
66 GA
6869949 ATTAAAACAG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCAACTCTCACAATATGAGTTGATTTTTT
GATGAT
Found at i:6869911 original size:155 final size:156
Alignment explanation
Indices: 6869687--6870039 Score: 414
Period size: 155 Copynumber: 2.2 Consensus size: 156
6869677 AAGCCAAGGC
*
6869687 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATA-AAATTGAAAACACCTAAGCATG
** * *
6869752 TGAGGCTCAACTCACCTCTTGCAATATGAGTTG-GTTTTTG-A-AAAACATAAATTG-AGCAGAA
65 TGAGGCTCAACTCACCTCTCACAATATGAGTTGAGTTTTTGAATAAAACAGAAATTGAAACAGAA
* * *
6869813 ATTGAAAATACCTCAACGGGTCTTGAGGT
130 ATGGAAAACACCTC-A-GCGTCTTGAGGT
* ** * *
6869842 TCAACTCAACTCTCGCAATATGAGTTGATTTTTTG-ATGAT-AAATTGAAAATACCTTAATGTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACC-TAA-G-CA
* *
6869905 CT-TGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAA
63 -TGTGAGGCTCAACTCACCTCTCACAATATGAGTTGAGTTTTTGAA-TAAAACAGAAATTG-AAA
*
6869969 TAGAAATGGAAAACACCTCAGCGTCTTGAGGT
125 CAGAAATGGAAAACACCTCAGCGTCTTGAGGT
*
6870001 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA
6870040 CACATAAATT
Statistics
Matches: 167, Mismatches: 19, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
152 13 0.08
153 2 0.01
154 4 0.02
155 65 0.39
156 7 0.04
157 1 0.01
159 49 0.29
160 8 0.05
161 18 0.11
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31
Consensus pattern (156 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACCTAAGCATGT
GAGGCTCAACTCACCTCTCACAATATGAGTTGAGTTTTTGAATAAAACAGAAATTGAAACAGAAA
TGGAAAACACCTCAGCGTCTTGAGGT
Found at i:6870070 original size:88 final size:87
Alignment explanation
Indices: 6869905--6870071 Score: 212
Period size: 88 Copynumber: 1.9 Consensus size: 87
6869895 CTTAATGTGA
* * *
6869905 CTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAAT
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAA-TAAAACAGAAATTAAAAAA
*
6869970 AGAAATGGAAAACACCTCAGCGT
65 AGAAATGAAAAACACCTCAGCGT
* * *
6869993 CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG-A-AACACATAAATTAAAAAA
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGA-TTTTTTGAATAAAACAGAAATT--AAAA
*
6870056 AAAGAAATTAAAAACA
63 AAAGAAATGAAAAACA
6870072 GAATTTGAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
86 10 0.15
88 51 0.75
89 7 0.10
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (87 bp):
CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAATAAAACAGAAATTAAAAAAA
GAAATGAAAAACACCTCAGCGT
Found at i:6870189 original size:75 final size:74
Alignment explanation
Indices: 6870063--6870381 Score: 351
Period size: 77 Copynumber: 4.3 Consensus size: 74
6870053 AAAAAAGAAA
* * ** *
6870063 TTAAAAACAGAATTTGAAAGGACCTC-GACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATAT
1 TTAAAAACAAAAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATAT
6870127 GAGTTGATTCTT
63 GAGTTGATTCTT
6870139 TTAAAAAGCAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTAAAAA-CAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
6870204 GTTGATTTTT
65 GTTGATTCTT
* * *
6870214 TTGATAAAA-ATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 TT-A-AAAACA-A-AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
6870278 TGAGTTGA-TCTT
62 TGAGTTGATTCTT
* * * ** *
6870290 TGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 TTAAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
6870353 TTGATTTTT
66 TTGATTCTT
** * *
6870362 TTTGAAACATAAATTAAAAA
1 TTAAAAACAAAAATTGAAAA
6870382 AACGAAAATT
Statistics
Matches: 211, Mismatches: 24, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
71 36 0.17
72 17 0.08
73 16 0.08
74 4 0.02
75 44 0.21
76 13 0.06
77 80 0.38
78 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (74 bp):
TTAAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTCTT
Found at i:6870262 original size:77 final size:76
Alignment explanation
Indices: 6870105--6870521 Score: 440
Period size: 77 Copynumber: 5.4 Consensus size: 76
6870095 TGGCCCGAGA
* *
6870105 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTT-AAAAAGCAAAAATTGAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
*
6870169 GTGTCCCGAGG
66 GTGTCCTGAGG
* * * *
6870180 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAAAACAAAAATTGAAAATACCTCAG
6870245 CGTGTCCTGAGG
65 CGTGTCCTGAGG
* * *
6870257 CTCAACTCACCTCTCGCAATATGAGTTGA--TCTTTG-ACAAACAAAAATTGAAATTACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
*
6870319 --GTCTTGAGG
66 GTGTCCTGAGG
* * **
6870328 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAACGAAAATTG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG-AA-A-AAA--CAAAAATTG--AA---
6870393 AAAATACCTCAGCGTGTCCTGAGG
55 --AATACCTCAGCGTGTCCTGAGG
** *
6870417 CTCAACTCACCTCTCGCAATATGAGTTGA---AATT-AAAACACAAAAATTGAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
* *
6870478 GTGCCCCGAGG
66 GTGTCCTGAGG
* *
6870489 CTCAACTCACCTCTTGCAATATGAGCTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
6870522 AAAAAAGTAG
Statistics
Matches: 284, Mismatches: 35, Indels: 46
0.78 0.10 0.13
Matches are distributed among these distances:
71 36 0.13
72 47 0.17
73 21 0.07
74 5 0.02
75 40 0.14
76 2 0.01
77 63 0.22
78 3 0.01
79 6 0.02
80 6 0.02
81 2 0.01
82 3 0.01
83 2 0.01
85 2 0.01
87 10 0.04
89 36 0.13
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (76 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
GTGTCCTGAGG
Found at i:6870420 original size:160 final size:160
Alignment explanation
Indices: 6870230--6870521 Score: 453
Period size: 160 Copynumber: 1.8 Consensus size: 160
6870220 AAAATAGAAT
* ** *
6870230 TTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGACA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAA
* ** * *
6870295 A-ACAAAAATTGAAATTACCTCAGCGT-CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
64 ACACAAAAATTGAAAATACCTCAGCGTCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
6870358 TTTTTTTGAAACATAAATTAAAAAAACGAAAA
129 TTTTTTTGAAACATAAATTAAAAAAACGAAAA
6870390 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
*
6870455 ACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATT
66 ACAAAAATTGAAAATACCTCAGCGT-CCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
6870520 TT
130 TT
6870522 AAAAAAGTAG
Statistics
Matches: 119, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
158 3 0.03
159 26 0.22
160 55 0.46
161 35 0.29
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (160 bp):
TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
ACAAAAATTGAAAATACCTCAGCGTCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTTGAAACATAAATTAAAAAAACGAAAA
Found at i:6870490 original size:72 final size:73
Alignment explanation
Indices: 6870372--6870527 Score: 233
Period size: 72 Copynumber: 2.2 Consensus size: 73
6870362 TTTGAAACAT
* * *
6870372 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
6870437 ATGAGTTG
66 ATGAGTTG
* *
6870445 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
*
6870509 ATGAGCTG
66 ATGAGTTG
**
6870517 ATTTTAAAAAA
1 AAATTAAAAAA
6870528 GTAGAAATTA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
72 64 0.88
73 9 0.12
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTG
Found at i:6870892 original size:72 final size:73
Alignment explanation
Indices: 6870667--6871026 Score: 361
Period size: 72 Copynumber: 4.8 Consensus size: 73
6870657 AGTGTGTAAT
* * * *
6870667 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA---TATTTTGAAAACAGAAATTGAAAATAC
*
6870732 CTCAGCATGTGAAC
63 CTCAGC--GTG-TC
* *
6870746 C-GAGGCTCAACTCACCTCTCGTAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA----TATTTTGAAAACAGAAATTGAAAATA
*
6870810 CCTCAACGTGTC
62 CCTCAGCGTGTC
* ** *
6870822 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAGAAATTGAAAATACCTC
6870886 AGCGTGTC
66 AGCGTGTC
** * * * * *
6870894 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAGCAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TATTTTGA-AAACAGAAATTGAAAATAC
6870959 CTCAGCGTGTC
63 CTCAGCGTGTC
* * *
6870970 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG--ATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTG-AAAACAGAAATTGAAAA
6871027 GGCTTAACTC
Statistics
Matches: 248, Mismatches: 26, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
71 3 0.01
72 80 0.32
73 1 0.00
75 5 0.02
76 61 0.25
77 33 0.13
78 30 0.12
79 35 0.14
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (73 bp):
CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAGAAATTGAAAATACCTC
AGCGTGTC
Found at i:6870973 original size:76 final size:76
Alignment explanation
Indices: 6870667--6871008 Score: 442
Period size: 76 Copynumber: 4.5 Consensus size: 76
6870657 AGTGTGTAAT
* *
6870667 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAGAAACAGAAATTGAAAATAC
*
6870732 CTCAGCATGTGAAC
66 CTCAGC--GTG-TC
* * *
6870746 C-GAGGCTCAACTCACCTCTCGTAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAG-AAACAGAAATTGAAAATA
*
6870810 CCTCAACGTGTC
65 CCTCAGCGTGTC
* ** * * * *
6870822 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGA-AAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAGAAACAGAAATTGAAAATAC
6870883 CTCAGCGTGTC
66 CTCAGCGTGTC
** * *
6870894 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAGCAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAGAAACAGAAATTGAAAATAC
6870959 CTCAGCGTGTC
66 CTCAGCGTGTC
*
6870970 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
6871009 GAAAAACAAA
Statistics
Matches: 233, Mismatches: 24, Indels: 15
0.86 0.09 0.06
Matches are distributed among these distances:
72 61 0.26
74 4 0.02
75 5 0.02
76 66 0.28
77 33 0.14
78 39 0.17
79 25 0.11
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (76 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAGAAACAGAAATTGAAAATAC
CTCAGCGTGTC
Found at i:6870975 original size:148 final size:149
Alignment explanation
Indices: 6870667--6871026 Score: 431
Period size: 148 Copynumber: 2.4 Consensus size: 149
6870657 AGTGTGTAAT
* * * *
6870667 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTAGCAATATAAGTTGA-----TTTTGAAAACAGAAATTGAAAATAC
* *
6870732 CTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGTAATATAAGTTGATTTTTTTTTTGAAAACA
61 CTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTAGAAAACA
6870797 GAAATTGAAAATACCTCAACGTGTC
125 GAAATTGAAAATACCTCAACGTGTC
* ** * *
6870822 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTAGCAATATAAGTTG-ATTTTGAAAACAGAAATTGAAAATACCTCA
* ** * *
6870887 GC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAG-CAACAGAAA
65 GCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTAGAAAACAGAAA
* *
6870949 TTGAAATTACCTCAGCGTGTC
129 TTGAAAATACCTCAACGTGTC
* *
6870970 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTAGCAATATAAGTTGATTTTG-AAAACAGAAATTGAAAA
6871027 GGCTTAACTC
Statistics
Matches: 179, Mismatches: 23, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
147 9 0.05
148 69 0.39
149 42 0.23
151 29 0.16
155 29 0.16
156 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (149 bp):
CTGAGGCTCAACTCACCTCTAGCAATATAAGTTGATTTTGAAAACAGAAATTGAAAATACCTCAG
CAGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTAGAAAACAGAAATT
GAAAATACCTCAACGTGTC
Found at i:6871174 original size:71 final size:70
Alignment explanation
Indices: 6871026--6871201 Score: 212
Period size: 71 Copynumber: 2.5 Consensus size: 70
6871016 AAAAATTAAA
* * * * * * **
6871026 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
6871090 CCCCG
66 CCCCG
*
6871095 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACCTCAACGT
* **
6871160 GTCTTG
65 GCCCCG
6871166 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
6871202 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.07
71 60 0.65
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:6879524 original size:12 final size:12
Alignment explanation
Indices: 6879504--6879569 Score: 81
Period size: 12 Copynumber: 6.0 Consensus size: 12
6879494 TGGGATATGC
*
6879504 AATGTATGAATG
1 AATGCATGAATG
6879516 AATGCATGAATG
1 AATGCATGAATG
6879528 AATGCATGAATG
1 AATGCATGAATG
6879540 --T-C---AATG
1 AATGCATGAATG
6879546 AATGCATGAATG
1 AATGCATGAATG
6879558 AATGCATGAATG
1 AATGCATGAATG
6879570 TCAAATGAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
6 4 0.09
8 1 0.02
9 2 0.04
10 1 0.02
12 39 0.83
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:6879546 original size:30 final size:31
Alignment explanation
Indices: 6879512--6879580 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 31
6879502 GCAATGTATG
6879512 AATGAATGCATGAATGAATGCATGAATGTC-
1 AATGAATGCATGAATGAATGCATGAATGTCA
6879542 AATGAATGCATGAATGAATGCATGAATGTCA
1 AATGAATGCATGAATGAATGCATGAATGTCA
6879573 AATGAATG
1 AATGAATG
6879581 TCAGTCATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 30 0.79
31 8 0.21
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (31 bp):
AATGAATGCATGAATGAATGCATGAATGTCA
Found at i:6879580 original size:4 final size:4
Alignment explanation
Indices: 6879504--6879569 Score: 69
Period size: 4 Copynumber: 16.0 Consensus size: 4
6879494 TGGGATATGC
* * * *
6879504 AATG TATG AATG AATG CATG AATG AATG CATG AATG TCAATG AATG CATG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG --AATG AATG AATG
*
6879554 AATG AATG CATG AATG
1 AATG AATG AATG AATG
6879570 TCAAATGAAT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
4 46 0.92
6 4 0.08
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (4 bp):
AATG
Found at i:6881190 original size:16 final size:15
Alignment explanation
Indices: 6881143--6881190 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
6881133 AATGTGAATA
*
6881143 ATAAAATATACAAAAT
1 ATAAAATAT-TAAAAT
*
6881159 ATAAACTATTAAAAT
1 ATAAAATATTAAAAT
*
6881174 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
6881190 A
1 A
6881191 ATAATAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.29
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:6881439 original size:15 final size:14
Alignment explanation
Indices: 6881415--6881462 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
6881405 AGATAACATG
6881415 TAAAAATATATACA
1 TAAAAATATATACA
*
6881429 TAAATAATATAATA-T
1 TAAA-AATAT-ATACA
*
6881444 TAAAGATATATACA
1 TAAAAATATATACA
6881458 TAAAA
1 TAAAA
6881463 TAGTATAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
13 3 0.11
14 12 0.44
15 9 0.33
16 3 0.11
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (14 bp):
TAAAAATATATACA
Found at i:6881470 original size:30 final size:29
Alignment explanation
Indices: 6881415--6881473 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
6881405 AGATAACATG
6881415 TAAAAATATATACATAAATAATATAATAT
1 TAAAAATATATACATAAATAATATAATAT
* *
6881444 TAAAGATATATACATAAAATAGTATAATAT
1 TAAAAATATATACAT-AAATAATATAATAT
6881474 ATATACGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (29 bp):
TAAAAATATATACATAAATAATATAATAT
Done.