Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 231 of 316
Found at i:75886059 original size:36 final size:39
Alignment explanation
Indices: 75885989--75886064 Score: 104
Period size: 36 Copynumber: 2.0 Consensus size: 39
75885979 ATAGTTTAAG
* * *
75885989 ATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
75886028 ATATATGGTTTAAGATTT-A-C-GGTTTAGGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
75886064 A
1 A
75886065 GTATTTGAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
38 1 0.03
39 16 0.47
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (39 bp):
ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
Found at i:75886681 original size:24 final size:23
Alignment explanation
Indices: 75886622--75886683 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
75886612 ATAAATGTAT
*
75886622 ATATATATAAGATAAATATATATA
1 ATATATATATGA-AAATATATATA
* *
75886646 TTAT-TATTTGAAAATATATATAA
1 ATATATATATGAAAATATATAT-A
75886669 ATATATATATGAAAA
1 ATATATATATGAAAA
75886684 GTGGTTTAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
22 10 0.32
23 9 0.29
24 12 0.39
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (23 bp):
ATATATATATGAAAATATATATA
Found at i:75888870 original size:23 final size:23
Alignment explanation
Indices: 75888844--75888890 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
75888834 GAGCTTGGTC
75888844 CTATTTCTCCTGTTAATGGTATA
1 CTATTTCTCCTGTTAATGGTATA
*
75888867 CTATTTCTCCTGTTAATGTTATA
1 CTATTTCTCCTGTTAATGGTATA
75888890 C
1 C
75888891 CAAATTGCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (23 bp):
CTATTTCTCCTGTTAATGGTATA
Found at i:75897481 original size:21 final size:21
Alignment explanation
Indices: 75897452--75897492 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
75897442 ACTTAGAGCG
*
75897452 GAGGTAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
75897473 GAGGCAGCAGCGAGGGAGGC
1 GAGGCAGCAGCGAGGGAGGC
75897493 GGAGCAGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.54, T:0.02
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:75897999 original size:85 final size:86
Alignment explanation
Indices: 75897795--75898151 Score: 452
Period size: 85 Copynumber: 4.2 Consensus size: 86
75897785 ACTGGGCAAA
* * * * * *
75897795 TTAGCGGCATTTTTTAAAAAAGCACCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTATAAAAG
1 TTAGCGGCGTTTTTTATAAAAGCACCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTATAAAAG
*
75897860 CGCCGCTAAAGGTCCTGGTCT
66 CGCCGCTAAAGGTCCAGGTCT
* * * *
75897881 TTAGCGGTGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGATCTTTAGCGGCGTTTTTTCTAAAAG
1 TTAGCGGCGTTTTTTATAAAAGCACCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTATAAAAG
* *
75897946 CGCCGCTAAAAGTACAGGTCT
66 CGCCGCTAAAGGTCCAGGTCT
* * * *
75897967 ATAG-GGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTTTAGCGGCGTTTTTTAAAAAAG
1 TTAGCGGCGTTTTTTATAAAAGCACCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTATAAAAG
75898031 CGCCGCTAAAGGTCCTA-GTCT
66 CGCCGCTAAAGGTCC-AGGTCT
* * * * *
75898052 TTGGCGGCG-TTTTTATAAGAGCACCGCTAAAGGTCCTGGTCGTTGGCGGCG-TTTTTATAAGAG
1 TTAGCGGCGTTTTTTATAAAAGCACCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTATAAAAG
*
75898115 CGCCGCTAAAGGTCCTGGTCT
66 CGCCGCTAAAGGTCCAGGTCT
*
75898136 TTAACGGCGCTTTTTT
1 TTAGCGGCG-TTTTTT
75898152 CTGAAAAACG
Statistics
Matches: 233, Mismatches: 33, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
84 36 0.15
85 111 0.48
86 86 0.37
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (86 bp):
TTAGCGGCGTTTTTTATAAAAGCACCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTATAAAAG
CGCCGCTAAAGGTCCAGGTCT
Found at i:75898079 original size:42 final size:43
Alignment explanation
Indices: 75897795--75898151 Score: 468
Period size: 43 Copynumber: 8.3 Consensus size: 43
75897785 ACTGGGCAAA
* * * * * *
75897795 TTAGCGGCATTTTTTAAAAAAGCACCGCTAAAAGTACAGGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
*
75897838 ATAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* *
75897881 TTAGCGGTGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGATCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* * * *
75897924 TTAGCGGCGTTTTTTCTAAAAGCGCCGCTAAAAGTACAGGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* *
75897967 ATAG-GGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* *
75898009 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAGGTCCTAGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* * * *
75898052 TTGGCGGCG-TTTTTATAAGAGCACCGCTAAAGGTCCTGGTCG
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* *
75898094 TTGGCGGCG-TTTTTATAAGAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
*
75898136 TTAACGGCGCTTTTTT
1 TTAGCGGCG-TTTTTT
75898152 CTGAAAAACG
Statistics
Matches: 275, Mismatches: 36, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
42 111 0.40
43 159 0.58
44 5 0.02
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
Found at i:75899661 original size:55 final size:55
Alignment explanation
Indices: 75899578--75899709 Score: 203
Period size: 55 Copynumber: 2.4 Consensus size: 55
75899568 GCACTTAAAA
* * * *
75899578 TTTT-AAGTCATTCTTGTACACAGGCAGGCCACACGGGCGTGTGCCATGGCCGTG
1 TTTTAAAGTCAGTATTGTACACGGGCAGGCCACACGGGCGTATGCCATGGCCGTG
75899632 TTTTAAAGTCAGTATTGTACACGGGCAGGCCACACGGGCGTATGCCATGGCCGTG
1 TTTTAAAGTCAGTATTGTACACGGGCAGGCCACACGGGCGTATGCCATGGCCGTG
* *
75899687 TTTTAAAGTCAGTGTTGCACACG
1 TTTTAAAGTCAGTATTGTACACG
75899710 AGATAAGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
54 4 0.06
55 67 0.94
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (55 bp):
TTTTAAAGTCAGTATTGTACACGGGCAGGCCACACGGGCGTATGCCATGGCCGTG
Found at i:75910260 original size:46 final size:46
Alignment explanation
Indices: 75910210--75910385 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
75910200 TGGTTGAGCA
*
75910210 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
75910256 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
75910303 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
75910349 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75910386 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:75910366 original size:93 final size:93
Alignment explanation
Indices: 75910207--75910378 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
75910197 GGATGGTTGA
* * *
75910207 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
*
75910272 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
75910300 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
75910365 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75910379 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75913360 original size:14 final size:15
Alignment explanation
Indices: 75913311--75913360 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
75913301 GTATCTTGGG
*
75913311 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
75913326 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
75913341 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75913355 TTTCTT
1 TTTCTT
75913361 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75915804 original size:46 final size:46
Alignment explanation
Indices: 75915751--75915926 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
75915741 TGGTTGAGCA
*
75915751 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
75915797 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
75915844 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
75915890 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75915927 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 29 0.27
48 2 0.02
50 5 0.05
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:75915855 original size:93 final size:93
Alignment explanation
Indices: 75915748--75915919 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
75915738 AGATGGTTGA
* * *
75915748 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
75915813 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
75915841 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAGCGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
75915906 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75915920 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75923069 original size:24 final size:23
Alignment explanation
Indices: 75923023--75923069 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
75923013 AAAATGACCA
*
75923023 AAAAATAATATACTTATTTATAG
1 AAAAATAATATAATTATTTATAG
* *
75923046 AAAAATATTATAATTTTTTCATAG
1 AAAAATAATATAATTATTT-ATAG
75923070 CTTATTTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (23 bp):
AAAAATAATATAATTATTTATAG
Found at i:75924845 original size:23 final size:23
Alignment explanation
Indices: 75924815--75924860 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
75924805 TTCAACAATG
75924815 AGACAATCTCTCCAATTATTGTC
1 AGACAATCTCTCCAATTATTGTC
75924838 AGACAATCTCTCCAATTATTGTC
1 AGACAATCTCTCCAATTATTGTC
75924861 TTCCTTGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (23 bp):
AGACAATCTCTCCAATTATTGTC
Found at i:75925492 original size:11 final size:11
Alignment explanation
Indices: 75925460--75925494 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
75925450 AACAAAACAC
*
75925460 AACATAAATAC
1 AACATAAATAT
75925471 AACATAAATAT
1 AACATAAATAT
75925482 AACATAAATAT
1 AACATAAATAT
75925493 AA
1 AA
75925495 TCTGAGTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (11 bp):
AACATAAATAT
Found at i:75925671 original size:23 final size:23
Alignment explanation
Indices: 75925624--75925671 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
75925614 CATTTGTTGG
** *
75925624 TAAAATATTTATATTTTATATTA
1 TAAAATATTTATAAATTATAATA
*
75925647 TAAAATATTTATAAATTGTAATA
1 TAAAATATTTATAAATTATAATA
75925670 TA
1 TA
75925672 TATTTATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
TAAAATATTTATAAATTATAATA
Found at i:75925804 original size:34 final size:36
Alignment explanation
Indices: 75925766--75925841 Score: 88
Period size: 34 Copynumber: 2.2 Consensus size: 36
75925756 TTATTACTAA
*
75925766 AATAAATTTGTAA-T-ATTAAATAATTTAATA-AAAT
1 AATAAATTTG-AATTAATTAAATAATTAAATACAAAT
* *
75925800 AATAAA-TTGAATTAATTATATTATTAAATACAAAT
1 AATAAATTTGAATTAATTAAATAATTAAATACAAAT
75925835 AATAAAT
1 AATAAAT
75925842 ACGTATGTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
32 2 0.06
33 4 0.11
34 19 0.54
35 10 0.29
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (36 bp):
AATAAATTTGAATTAATTAAATAATTAAATACAAAT
Found at i:75933889 original size:142 final size:142
Alignment explanation
Indices: 75933632--75933915 Score: 532
Period size: 142 Copynumber: 2.0 Consensus size: 142
75933622 GCTGCTAAGG
75933632 ATATTTGGGCTCAGGTTAATCAAGGTAAGTATATTTCTAATTTTTTTTCAATTCCCACTCAAGAC
1 ATATTTGGGCTCAGGTTAATCAAGGTAAGTATATTTCTAATTTTTTTTCAATTCCCACTCAAGAC
*
75933697 TGGATTCTTCTTAATTTACAGGTAAATAGGTTGATCTATGCGGGAAGAGCTAATTGGGCTTGTTT
66 TGGATTCTTCTTAATTTACAGGTAAATAGGTTGATCCATGCGGGAAGAGCTAATTGGGCTTGTTT
75933762 ATTTGGTCTTCT
131 ATTTGGTCTTCT
*
75933774 ATATTTGGGCTCAGGTTAATCAAGGTAAGTATATTTCTATTTTTTTTTCAATTCCCACTCAAGAC
1 ATATTTGGGCTCAGGTTAATCAAGGTAAGTATATTTCTAATTTTTTTTCAATTCCCACTCAAGAC
* *
75933839 TGGATTCTTCTTAATTTATAGGTAAATAGGTTGATCCATGCGGGAGGAGCTAATTGGGCTTGTTT
66 TGGATTCTTCTTAATTTACAGGTAAATAGGTTGATCCATGCGGGAAGAGCTAATTGGGCTTGTTT
75933904 ATTTGGTCTTCT
131 ATTTGGTCTTCT
75933916 TATGTGGCAT
Statistics
Matches: 138, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
142 138 1.00
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (142 bp):
ATATTTGGGCTCAGGTTAATCAAGGTAAGTATATTTCTAATTTTTTTTCAATTCCCACTCAAGAC
TGGATTCTTCTTAATTTACAGGTAAATAGGTTGATCCATGCGGGAAGAGCTAATTGGGCTTGTTT
ATTTGGTCTTCT
Found at i:75936449 original size:12 final size:12
Alignment explanation
Indices: 75936427--75936459 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
75936417 AAAAATTGAA
75936427 ATTTT-ATTTTG
1 ATTTTAATTTTG
75936438 ATTTTAATTTTG
1 ATTTTAATTTTG
*
75936450 ATTCTAATTT
1 ATTTTAATTT
75936460 ATGTAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.67
Consensus pattern (12 bp):
ATTTTAATTTTG
Found at i:75940466 original size:51 final size:51
Alignment explanation
Indices: 75940405--75940558 Score: 283
Period size: 51 Copynumber: 3.0 Consensus size: 51
75940395 AAATTAAAAG
75940405 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
75940456 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
*
75940507 ATTATACATACACCAGCAATGTTTTTTAGGG-ACAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTA-AATAACATTAAACCAACA
75940558 A
1 A
75940559 GTAATTTTAG
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
50 1 0.01
51 100 0.99
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (51 bp):
ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
Found at i:75940567 original size:33 final size:34
Alignment explanation
Indices: 75940504--75940614 Score: 106
Period size: 33 Copynumber: 3.4 Consensus size: 34
75940494 CATTAAACCA
* * *
75940504 ACAATTATACATACACCAGCAATGT-TTTTTAGGG
1 ACAATTATACATAAACCAACAA-GTAATTTTAGGG
75940538 ACAA-TA-ACATTAAACCAACAAGTAATTTTA-GG
1 ACAATTATACA-TAAACCAACAAGTAATTTTAGGG
* * *
75940570 TCAATTATACATACACCAACAATTAATTTTA-GG
1 ACAATTATACATAAACCAACAAGTAATTTTAGGG
*
75940603 TCAATTATACAT
1 ACAATTATACAT
75940615 GCTTTATAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
32 10 0.15
33 50 0.75
34 7 0.10
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (34 bp):
ACAATTATACATAAACCAACAAGTAATTTTAGGG
Found at i:75943831 original size:120 final size:120
Alignment explanation
Indices: 75943634--75944379 Score: 1325
Period size: 120 Copynumber: 6.2 Consensus size: 120
75943624 TTTTCAAGTT
* *
75943634 ATATATTTAATAATAATTATGTTAATTTATATCTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
75943699 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
*
75943754 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
75943819 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
*
75943874 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
**
75943939 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
75943994 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
75944059 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
75944115 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTTCAGTAAA
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGA-TTTCAGTAAA
* *
75944180 TTAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
65 TTAATATAAGAATATTAAT--TATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
75944237 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
75944302 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
75944357 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
75944380 TAAATATGAT
Statistics
Matches: 612, Mismatches: 10, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
119 2 0.00
120 374 0.61
121 113 0.18
122 123 0.20
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
Found at i:75944301 original size:363 final size:360
Alignment explanation
Indices: 75943634--75944379 Score: 1343
Period size: 363 Copynumber: 2.1 Consensus size: 360
75943624 TTTTCAAGTT
*
75943634 ATATATTTAATAATAATTATGTTAATTTATATCTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATCTTACAGTATCATATATTATGATTTCAGTAAAT
*
75943699 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATAATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAA
*
75943764 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
*
75943829 ATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
196 ATATTAATAATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
*
75943894 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
261 GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
*
75943959 TTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
326 TTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
75943994 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATCTTACAGTATCATATATTATGATTTCAGTAAAT
*
75944059 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTT
66 TAATATAAGAATATTAAT--AATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTT
75944123 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTTCAGTAAATTAATATA
129 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGA-TTTCAGTAAATTAATATA
*
75944188 AGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATA
193 AGAATATTAAT--AATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATA
75944252 ATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATT
256 ATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATT
*
75944317 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
321 AATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
75944357 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
75944380 TAAATATGAT
Statistics
Matches: 371, Mismatches: 10, Indels: 7
0.96 0.03 0.02
Matches are distributed among these distances:
359 2 0.01
360 78 0.21
361 91 0.25
362 25 0.07
363 175 0.47
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (360 bp):
ATATATTTAATAATAATTATGTTAATTTATATCTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATAATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAA
TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
ATATTAATAATTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
TTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:75944356 original size:18 final size:17
Alignment explanation
Indices: 75944328--75944362 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
75944318 ATTATTAAGA
*
75944328 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
75944345 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
75944363 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:75944576 original size:44 final size:45
Alignment explanation
Indices: 75944527--75944617 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
75944517 ACCTCTATTC
* * *
75944527 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
75944571 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
75944616 CA
1 CA
75944618 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:75944619 original size:16 final size:16
Alignment explanation
Indices: 75944598--75944666 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
75944588 GATTAGCTAT
75944598 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
75944614 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
75944631 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
75944647 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
75944663 TACA
1 TACA
75944667 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:75944640 original size:33 final size:32
Alignment explanation
Indices: 75944598--75944666 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
75944588 GATTAGCTAT
75944598 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
75944631 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
75944663 TACA
1 TACA
75944667 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:75952311 original size:41 final size:41
Alignment explanation
Indices: 75952254--75952338 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
75952244 ACATGGACTG
*
75952254 ATTCAATTGGATCAATGATTATATGATTAATTGT-ACAATTT
1 ATTCAATTGGATCAATGATTATATAATTAA-TGTCACAATTT
*
75952295 ATTCAATTGGATCAATGATTGTATAATTAATGTCACAATTT
1 ATTCAATTGGATCAATGATTATATAATTAATGTCACAATTT
75952336 ATT
1 ATT
75952339 TGATTACGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
40 3 0.07
41 38 0.93
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (41 bp):
ATTCAATTGGATCAATGATTATATAATTAATGTCACAATTT
Found at i:75952822 original size:40 final size:41
Alignment explanation
Indices: 75952755--75952832 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75952745 ATGGACTAAT
*
75952755 TCAATTGGATAAATGATTGTACGATTAATAT-ACAATTTAC
1 TCAATTGGATAAATGATTGTACAATTAATATCACAATTTAC
* * *
75952795 TCAATTGGATTATTGAATT-TACAATTAATGTCACAATT
1 TCAATTGGATAAATG-ATTGTACAATTAATATCACAATT
75952833 CATTGGACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 23 0.72
41 9 0.28
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (41 bp):
TCAATTGGATAAATGATTGTACAATTAATATCACAATTTAC
Found at i:75953092 original size:498 final size:494
Alignment explanation
Indices: 75952130--75953892 Score: 2132
Period size: 498 Copynumber: 3.6 Consensus size: 494
75952120 CAAGTGTCAT
* *
75952130 ATAAATACTCTTAAATTAATCAAATATTTGAAATTAAACATAAGTGATCCAAAGTTTTGA-TATA
1 ATAAATACTCTTAAATTAATCAAATATTTGAAATTAAACATAGGTGGTCCAAAGTTTT-ATTATA
** *
75952194 TTTCATGATATGATATTGAATTCTAAACATGTATACTCAATGTTGTGTTTACATGGACTGATTCA
65 TTTCAT-ATATGATATTGAATT-TAAACATGTATACT-AATGTTAAGTTTACATGGACTAATTCA
* * * * * * *
75952259 ATTGGATCAATGATTATATGATTAATTGTACAATTTATTCAATTGGATCAATGATTGTATAATTA
127 ATTGGATAAATGATTGTACGATTAATTATACAATTTATTCAATTGGATCATTGATTATACAATTA
* * *
75952324 ATGTCACAATTTATTTGATTACGCTAGTAATTAG-AGAAATATACAATTGATCAAAACTTTTAAA
192 ATGTCACAATTCATTGGATTTC-CTAGTAATTAGAAG-AATATACAATTGAT-AAAACTTTTAAA
** * * * * * *
75952388 AATACTTTTACACTACAATGTTATTACCTTCATACATAGATTCATTCAATTCGATCAACGATTGT
254 AATACTTACACACTATAATGTCATCACCTTCATACATAGATTCATTCAATTAGATCAATGAGTGT
* * * * *
75952453 ACAAGTATTGTCATAACTCATTCAAATAAATTAGAAATCAGAAAAATGTAAAAGTGACCATTACT
319 ACAACTAATGTCATAACTCATTCAAATACATTAGAAATTAGAAAAATGTAAAAGTGA-TATTACT
* *
75952518 CGTCAAATTACTTGTACACCACAATGTTAGTACATTTGTATATAGACCCAATTCAATTGGTTCAA
383 CTTCAAATTACTTGTACACCACAATGTTAGTACATTTATATATAGACCCAATTCAATTGGTTCAA
* * *
75952583 TTTCGTAATCATTCAATTACATTAGTGGTTAGAGGAATGCATAATTG
448 TGTCATAATCATTCAATTACATTAGTAGTTAGAGGAATGCATAATTG
* *
75952630 ATAAATACTCTTAAATTAATCAAATATTTGAAATTAATCATAGGTGGTCCATAGTTTTATTATAT
1 ATAAATACTCTTAAATTAATCAAATATTTGAAATTAAACATAGGTGGTCCAAAGTTTTATTATAT
*
75952695 TTCACTATATGATATTCAATTTAAACATGTATACTAGATGTTAAGTTTACATGGACTAATTCAAT
66 TTCA-TATATGATATTGAATTTAAACATGTATACTA-ATGTTAAGTTTACATGGACTAATTCAAT
* *
75952760 TGGATAAATGATTGTACGATTAA-TATACAATTTACTCAATTGGATTATTGAATT-TACAATTAA
129 TGGATAAATGATTGTACGATTAATTATACAATTTATTCAATTGGATCATTG-ATTATACAATTAA
75952823 TGTCACAATTCATTGGACTTTCCTAGTAATTAGAAGAATATACAATTGATAAATACTTTTAAAAA
193 TGTCACAATTCATTGGA-TTTCCTAGTAATTAGAAGAATATACAATTGATAAA-ACTTTT-AAAA
* *
75952888 ATACTTACACACTGTAATGTCATCACCTTCATATATAGATTCATTCAATTAGATCAATGAGTGTA
255 ATACTTACACACTATAATGTCATCACCTTCATACATAGATTCATTCAATTAGATCAATGAGTGTA
* *
75952953 CAATTAATGTAATAACTCATTCAAATACATTAGAAATTAGAAAAATGTAAAAGTGATATTACTCT
320 CAACTAATGTCATAACTCATTCAAATACATTAGAAATTAGAAAAATGTAAAAGTGATATTACTCT
* * **
75953018 TCAAATTACTTGTACGCCACAATGTTAGTATATCCATATATAGACCCAATTCAATTGGTTCAATG
385 TCAAATTACTTGTACACCACAATGTTAGTACATTTATATATAGACCCAATTCAATTGGTTCAATG
*
75953083 TCATAATCATTCAATTACATTAGTAGTTATAGGAATGCATAATTG
450 TCATAATCATTCAATTACATTAGTAGTTAGAGGAATGCATAATTG
*
75953128 ATAAATACTCTTAAATTAATCAAATATTTGAAATTAAACATAGGTGGTCCAAAGTTTTAATATAT
1 ATAAATACTCTTAAATTAATCAAATATTTGAAATTAAACATAGGTGGTCCAAAGTTTTATTATAT
* * *
75953193 TTCACTACATGATATTGAATTTAAACATGTATACTAGATGTTAAGTTTATATGGACTAATTCATT
66 TTCA-TATATGATATTGAATTTAAACATGTATACTA-ATGTTAAGTTTACATGGACTAATTCAAT
* * *
75953258 TGGATAAAT-ACTTGTACGACTAATTATACAATTTATTCTATTGGATCATTGGA-TGTACAATTA
129 TGGATAAATGA-TTGTACGATTAATTATACAATTTATTCAATTGGATCATT-GATTATACAATTA
* * *
75953321 ATGTCACAATTCATTGGAATTTCCTAGTAATTAGAGGAATATGCAATTG---------GT--AAA
192 ATGTCACAATTCATTGG-ATTTCCTAGTAATTAGAAGAATATACAATTGATAAAACTTTTAAAAA
*
75953375 TACTTACACACTATAATGTCATCACCTTCATACATAGATTCGTTCAATTAGATCAATGAGTGTAC
256 TACTTACACACTATAATGTCATCACCTTCATACATAGATTCATTCAATTAGATCAATGAGTGTAC
** * * * * * * *
75953440 AACTAATGTCATAACTCATGATCAGTTACGTTAG-TATTAGAGAAATGTACAATTAATCAATACT
321 AACTAATGTCATAACTCAT--TCAAATACATTAGAAATTAGAAAAATGTAAAAGTGAT-ATTACT
* *
75953504 CTTCAAATTACTTGTACACCACAATGTTAGTACATTTTATATATAGATCCGATTCAATTGGTTCA
383 CTTCAAATTACTTGTACACCACAATGTTAGTACA-TTTATATATAGACCCAATTCAATTGGTTCA
* * * *
75953569 ATGTCATAAGCATTCGA-TAGCGTTTGTAGTTAGAGGAATGCATAATTG
447 ATGTCATAATCATTCAATTA-CATTAGTAGTTAGAGGAATGCATAATTG
* * * * * *
75953617 ATAAATACTCTTAAATTGATCAAATATTTAAAATTAAACATTGATAGTCCAAACTTTT-TATATA
1 ATAAATACTCTTAAATTAATCAAATATTTGAAATTAAACATAGGTGGTCCAAAGTTTTAT-TATA
* * * ** * * ** *
75953681 TTTCGATATATGTTATTGAATTTCAAACATGTATATTTAATTTTGTGTTTATATGAACCGATTGA
65 TTTC-ATATATGATATTGAATTT-AAACATGTATA-CTAATGTTAAGTTTACATGGACTAATTCA
* * * * * *
75953746 ATT-GATCAATGGTTGTACGA-TACATTATACAATTTATTCAGTTAGATTATTGGTTATACAATT
127 ATTGGATAAATGATTGTACGATTA-ATTATACAATTTATTCAATTGGATCATTGATTATACAATT
* * * * * * *
75953809 AATGCCATAGATT-ATTTGATTATGCTAATAATTAGAAGAATATACAATTCATTAATACTTTTAA
191 AATGTCACA-ATTCATTGGATT-TCCTAGTAATTAGAAGAATATACAATTGA-TAAAACTTTTAA
* * *
75953873 AAATACATATACATTATAAT
253 AAATACTTACACACTATAAT
75953893 TTTTTAAAGT
Statistics
Matches: 1102, Mismatches: 122, Indels: 77
0.85 0.09 0.06
Matches are distributed among these distances:
486 82 0.07
487 18 0.02
488 55 0.05
489 222 0.20
490 36 0.03
491 2 0.00
497 4 0.00
498 330 0.30
499 256 0.23
500 79 0.07
501 18 0.02
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (494 bp):
ATAAATACTCTTAAATTAATCAAATATTTGAAATTAAACATAGGTGGTCCAAAGTTTTATTATAT
TTCATATATGATATTGAATTTAAACATGTATACTAATGTTAAGTTTACATGGACTAATTCAATTG
GATAAATGATTGTACGATTAATTATACAATTTATTCAATTGGATCATTGATTATACAATTAATGT
CACAATTCATTGGATTTCCTAGTAATTAGAAGAATATACAATTGATAAAACTTTTAAAAATACTT
ACACACTATAATGTCATCACCTTCATACATAGATTCATTCAATTAGATCAATGAGTGTACAACTA
ATGTCATAACTCATTCAAATACATTAGAAATTAGAAAAATGTAAAAGTGATATTACTCTTCAAAT
TACTTGTACACCACAATGTTAGTACATTTATATATAGACCCAATTCAATTGGTTCAATGTCATAA
TCATTCAATTACATTAGTAGTTAGAGGAATGCATAATTG
Found at i:75955758 original size:28 final size:26
Alignment explanation
Indices: 75955710--75955781 Score: 74
Period size: 28 Copynumber: 2.7 Consensus size: 26
75955700 ACAGGGCTCG
* * *
75955710 CATATAGGGTTTGCTTGTAAGGCTTGCA
1 CATATAGGGTTCGCATATAAGG-TT-CA
75955738 CATATAGGGTTCGCATATAAGGTTCA
1 CATATAGGGTTCGCATATAAGGTTCA
* *
75955764 CACATAAGGTTC-CATATA
1 CATATAGGGTTCGCATATA
75955782 GTAATTCATA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
25 6 0.15
26 12 0.31
27 2 0.05
28 19 0.49
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (26 bp):
CATATAGGGTTCGCATATAAGGTTCA
Found at i:75955774 original size:26 final size:27
Alignment explanation
Indices: 75955727--75955781 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
75955717 GGTTTGCTTG
* *
75955727 TAAGGCTTGCACATATAGGGTTCGCATA
1 TAAGGCTTGCACACATAAGGTTC-CATA
75955755 TAAGG-TT-CACACATAAGGTTCCATA
1 TAAGGCTTGCACACATAAGGTTCCATA
75955780 TA
1 TA
75955782 GTAATTCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.24
26 12 0.48
27 2 0.08
28 5 0.20
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (27 bp):
TAAGGCTTGCACACATAAGGTTCCATA
Found at i:75955809 original size:23 final size:24
Alignment explanation
Indices: 75955766--75955825 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
75955756 AAGGTTCACA
*
75955766 CATA-AGGTTC-CATATAGTAATT
1 CATATAGGTTCGCATATACTAATT
75955788 CATATAGGTTCGCATA-ACTAATT
1 CATATAGGTTCGCATATACTAATT
* *
75955811 CATATGGGTTTGCAT
1 CATATAGGTTCGCAT
75955826 GATAACCATC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 4 0.12
23 25 0.76
24 4 0.12
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37
Consensus pattern (24 bp):
CATATAGGTTCGCATATACTAATT
Found at i:75955888 original size:22 final size:22
Alignment explanation
Indices: 75955862--75955908 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
75955852 TCACTAAGAG
* * *
75955862 GGGTTCACCTAGCGTTCCTTAA
1 GGGTTCACATAACATTCCTTAA
*
75955884 GGGTTCGCATAACATTCCTTAA
1 GGGTTCACATAACATTCCTTAA
75955906 GGG
1 GGG
75955909 CTTGCAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (22 bp):
GGGTTCACATAACATTCCTTAA
Found at i:75956197 original size:18 final size:17
Alignment explanation
Indices: 75956173--75956223 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
75956163 AATTCTTTAA
75956173 AGGTTCACATGATATCT
1 AGGTTCACATGATATCT
*
75956190 ATGGTTCACAT-AGTACCT
1 A-GGTTCACATGA-TATCT
75956208 AGAGTTCACATGATAT
1 AG-GTTCACATGATAT
75956224 GTATAGCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 3 0.11
18 24 0.86
19 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (17 bp):
AGGTTCACATGATATCT
Found at i:75956220 original size:36 final size:36
Alignment explanation
Indices: 75956175--75956323 Score: 122
Period size: 36 Copynumber: 4.1 Consensus size: 36
75956165 TTCTTTAAAG
* *
75956175 GTTCACATGATATCTATGGTTCA-CATAGTACCTAGA
1 GTTCACATGATATCTATAGCT-AGCATAGTACCTAGA
* *
75956211 GTTCACATGATATGTATAGCTAGCATAGTACCTTGA
1 GTTCACATGATATCTATAGCTAGCATAGTACCTAGA
* * * * * *
75956247 GTTCGCATGTTATGTATAGGGCGT-GCATAATATCTAGG
1 GTTCACATGATATCTATA--GC-TAGCATAGTACCTAGA
** * *
75956285 GTTTGCATGATATCTATAGCTCGCACAGTACCTAGA
1 GTTCACATGATATCTATAGCTAGCATAGTACCTAGA
75956321 GTT
1 GTT
75956324 TGCATGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
35 2 0.02
36 61 0.67
38 27 0.30
39 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (36 bp):
GTTCACATGATATCTATAGCTAGCATAGTACCTAGA
Found at i:75956349 original size:74 final size:74
Alignment explanation
Indices: 75956216--75956361 Score: 195
Period size: 74 Copynumber: 2.0 Consensus size: 74
75956206 CTAGAGTTCA
* * * * * *
75956216 CATGATATGTATAGCTAGCATAGTACCTTGAGTTCGCATGTTATGTATAGGGCGTGCATAATATC
1 CATGATATCTATAGCTAGCACAGTACCTAGAGTTCGCATGTTATATATAAGGCATGCATAATATC
75956281 TAGGGTTTG
66 TAGGGTTTG
* * *
75956290 CATGATATCTATAGCTCGCACAGTACCTAGAGTTTGCATGTTATATATAAGG-ATCGCATAGTAT
1 CATGATATCTATAGCTAGCACAGTACCTAGAGTTCGCATGTTATATATAAGGCAT-GCATAATAT
75956354 CTAGGGTT
65 CTAGGGTT
75956362 CACATGTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
73 1 0.02
74 61 0.98
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.34
Consensus pattern (74 bp):
CATGATATCTATAGCTAGCACAGTACCTAGAGTTCGCATGTTATATATAAGGCATGCATAATATC
TAGGGTTTG
Found at i:75957113 original size:29 final size:30
Alignment explanation
Indices: 75957037--75957117 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
75957027 ATTCTGACTA
* *
75957037 ATTTACCTAAAAAGGCCCATTTCCAAGTAT
1 ATTTACCTAAAAAGGCCGATTTCCAAATAT
*
75957067 ATTTA--TAAAAATGAGCCGATTTCTAAAT-T
1 ATTTACCTAAAAA-G-GCCGATTTCCAAATAT
*
75957096 ATTTACCGAAAAAGGCCGATTT
1 ATTTACCTAAAAAGGCCGATTT
75957118 TGGCAAAACG
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
28 6 0.14
29 15 0.35
30 17 0.40
31 5 0.12
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (30 bp):
ATTTACCTAAAAAGGCCGATTTCCAAATAT
Found at i:75958715 original size:32 final size:33
Alignment explanation
Indices: 75958674--75958736 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
75958664 TCATAAATTT
* *
75958674 TAAAAAAATTAGCCTATTTTT-ATAATTTTTTA
1 TAAAAAAATTACCCTATTTTTGAAAATTTTTTA
*
75958706 TAAAAAAATTACCCTTTTTTTGAAAATTTTT
1 TAAAAAAATTACCCTATTTTTGAAAATTTTT
75958737 GAGTGGGTGC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 19 0.70
33 8 0.30
ACGTcount: A:0.40, C:0.08, G:0.03, T:0.49
Consensus pattern (33 bp):
TAAAAAAATTACCCTATTTTTGAAAATTTTTTA
Found at i:75959404 original size:11 final size:9
Alignment explanation
Indices: 75959378--75959419 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
75959368 AAAAATTAAT
75959378 ATTTAAAAA
1 ATTTAAAAA
75959387 ATTTAAAGAA
1 ATTTAAA-AA
*
75959397 ATTTTAAAA
1 ATTTAAAAA
75959406 A-TTAATAAA
1 ATTTAA-AAA
75959415 ATTTA
1 ATTTA
75959420 CATTTCATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
8 3 0.11
9 14 0.50
10 11 0.39
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
ATTTAAAAA
Found at i:75973296 original size:24 final size:24
Alignment explanation
Indices: 75973251--75973297 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
75973241 TCTTACATAA
*
75973251 TTATATATTTTGAAAATTAATTTT
1 TTATATATTTTGAAAATAAATTTT
75973275 TTATATATTTT-AAATATAAATTT
1 TTATATATTTTGAAA-ATAAATTT
75973298 GAATTTTAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
TTATATATTTTGAAAATAAATTTT
Found at i:75973554 original size:25 final size:25
Alignment explanation
Indices: 75973509--75973559 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
75973499 CCATTCTAAC
* *
75973509 AAAAAAAATATAGTATCAAGATGAA
1 AAAAAAAATATAATATCAAGAGGAA
*
75973534 AAAAAAGAATATAAT-TTAAGAGGAA
1 AAAAAA-AATATAATATCAAGAGGAA
75973559 A
1 A
75973560 TTTTAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.65, C:0.02, G:0.14, T:0.20
Consensus pattern (25 bp):
AAAAAAAATATAATATCAAGAGGAA
Found at i:75977751 original size:15 final size:15
Alignment explanation
Indices: 75977731--75977761 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75977721 TTGATGATAG
75977731 GCTGATTAGAAATTA
1 GCTGATTAGAAATTA
75977746 GCTGATTAGAAATTA
1 GCTGATTAGAAATTA
75977761 G
1 G
75977762 GGCTAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (15 bp):
GCTGATTAGAAATTA
Found at i:75983759 original size:18 final size:18
Alignment explanation
Indices: 75983725--75983997 Score: 192
Period size: 18 Copynumber: 15.1 Consensus size: 18
75983715 TCATTAACTC
* *
75983725 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAGTTAT
*
75983742 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAGTTAT
* *
75983760 TCGGTAACAATCAATTAT
1 TCAGTAACAATCAGTTAT
* * *
75983778 TCAATAATAACCAGTTAT
1 TCAGTAACAATCAGTTAT
* *
75983796 TCAGTATCGATCATCGGTTAT
1 TCAGTAAC-A--ATCAGTTAT
* * *
75983817 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
*
75983835 TCAGTAA-AATCAGATAT
1 TCAGTAACAATCAGTTAT
*
75983852 TCAGTAACAATTAAGTTAT
1 TCAGTAACAA-TCAGTTAT
* *
75983871 TCAGTAGCAGTCA-TTCAT
1 TCAGTAACAATCAGTT-AT
* *
75983889 TCAGTGACAATTAGTTAT
1 TCAGTAACAATCAGTTAT
** *
75983907 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAGTTAT
* *
75983925 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCAGTTAT
*
75983943 TCAGTAACAATCAATTAT
1 TCAGTAACAATCAGTTAT
* * * **
75983961 CCGGTAACAGTCAACTAT
1 TCAGTAACAATCAGTTAT
* *
75983979 TCAGTAATAATCAGCTAT
1 TCAGTAACAATCAGTTAT
75983997 T
1 T
75983998 TTATACCTTT
Statistics
Matches: 194, Mismatches: 54, Indels: 15
0.74 0.21 0.06
Matches are distributed among these distances:
17 20 0.10
18 143 0.74
19 17 0.09
20 1 0.01
21 13 0.07
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
TCAGTAACAATCAGTTAT
Found at i:75983869 original size:75 final size:75
Alignment explanation
Indices: 75983738--75983876 Score: 183
Period size: 75 Copynumber: 1.9 Consensus size: 75
75983728 GAACAATTAT
* * * * *
75983738 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAATTATTCAATAATAACCAGTTATTCAGTAT
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCAATTATTCAATAACAACAAGTTATTCAGTAT
75983803 CGATCATCGG
66 CGATCATCGG
* *
75983813 TTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA-TATTCAGTAACAATTAAGTTATTCAGT
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCA-ATTATTCAATAACAA-CAAGTTATTCAGT
75983876 A
64 A
75983877 GCAGTCATTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
74 16 0.29
75 39 0.71
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (75 bp):
TTATCCAGTAACAGTCAATTATTCAGTAACAATCAATTATTCAATAACAACAAGTTATTCAGTAT
CGATCATCGG
Found at i:75984166 original size:47 final size:47
Alignment explanation
Indices: 75984114--75984230 Score: 182
Period size: 47 Copynumber: 2.5 Consensus size: 47
75984104 CAATAACAGT
* *
75984114 AACAGTAGCAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGG
1 AACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
* *
75984161 AACAGTAACAGTACGGTACACAGAGTACCTTATTGGAACAAATCCGA
1 AACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
75984208 AACAGTAACAGTAACGGTA-ACAG
1 AACAGTAACAGT-ACGGTACACAG
75984231 TAACAATATC
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
47 59 0.91
48 6 0.09
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.16
Consensus pattern (47 bp):
AACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
Found at i:75984900 original size:20 final size:18
Alignment explanation
Indices: 75984866--75984903 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
75984856 AAACTTTCAA
75984866 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
75984884 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
75984904 ATTCCCTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 6 0.33
20 7 0.39
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:75989678 original size:18 final size:18
Alignment explanation
Indices: 75989644--75989828 Score: 133
Period size: 18 Copynumber: 10.2 Consensus size: 18
75989634 TCATTAACTC
* *
75989644 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAGTTAT
*
75989661 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAGTTAT
* *
75989679 TCGGTAACAATCAATTAT
1 TCAGTAACAATCAGTTAT
* * *
75989697 TCAATAATAACCAGTTAT
1 TCAGTAACAATCAGTTAT
* *
75989715 TCAGTATCGATCATCGGTTAT
1 TCAGTAAC-A--ATCAGTTAT
* * *
75989736 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
*
75989754 TCAGTAA-AATCAGATAT
1 TCAGTAACAATCAGTTAT
*
75989771 TCAGTAACAATTAAGTTAT
1 TCAGTAACAA-TCAGTTAT
* *
75989790 TCAGTAGCAGTCA-TTCAT
1 TCAGTAACAATCAGTT-AT
* *
75989808 TCAGTGACAATTAGTTAT
1 TCAGTAACAATCAGTTAT
75989826 TCA
1 TCA
75989829 ATAATTGTAA
Statistics
Matches: 126, Mismatches: 34, Indels: 15
0.72 0.19 0.09
Matches are distributed among these distances:
17 20 0.16
18 75 0.60
19 17 0.13
20 1 0.01
21 13 0.10
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
TCAGTAACAATCAGTTAT
Found at i:75989788 original size:75 final size:75
Alignment explanation
Indices: 75989657--75989795 Score: 183
Period size: 75 Copynumber: 1.9 Consensus size: 75
75989647 GAACAATTAT
* * * * *
75989657 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAATTATTCAATAATAACCAGTTATTCAGTAT
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCAATTATTCAATAACAACAAGTTATTCAGTAT
75989722 CGATCATCGG
66 CGATCATCGG
* *
75989732 TTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA-TATTCAGTAACAATTAAGTTATTCAGT
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCA-ATTATTCAATAACAA-CAAGTTATTCAGT
75989795 A
64 A
75989796 GCAGTCATTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
74 16 0.29
75 39 0.71
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (75 bp):
TTATCCAGTAACAGTCAATTATTCAGTAACAATCAATTATTCAATAACAACAAGTTATTCAGTAT
CGATCATCGG
Found at i:75989801 original size:54 final size:54
Alignment explanation
Indices: 75989658--75989812 Score: 152
Period size: 54 Copynumber: 2.8 Consensus size: 54
75989648 AACAATTATT
* * * * *
75989658 TATTCAGTAACAGTCAGTTATTCGGTAACAATCAATTATTCAATAATAACCAGT
1 TATTCAGTAACATTCAGTTATTCAGTAACAGTCAATTATTCAGTAATAACCAGA
* * * *
75989712 TATTCAGTATCGATCATCGGTTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA
1 TATTCAGTAAC-AT--TCAGTTATTCAGTAACAGTCAATTATTCAGTAATAACCAGA
* *
75989768 TATTCAGTAACAATTAAGTTATTCAGTAGCAGTC-ATTCATTCAGT
1 TATTCAGTAAC-ATTCAGTTATTCAGTAACAGTCAATT-ATTCAGT
75989813 GACAATTAGT
Statistics
Matches: 82, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
53 3 0.04
54 33 0.40
55 1 0.01
56 17 0.21
57 28 0.34
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (54 bp):
TATTCAGTAACATTCAGTTATTCAGTAACAGTCAATTATTCAGTAATAACCAGA
Found at i:75991845 original size:93 final size:93
Alignment explanation
Indices: 75991732--75991903 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75991722 CGCCCATAAG
* *
75991732 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75991797 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75991825 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75991890 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75991904 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75991900 original size:46 final size:46
Alignment explanation
Indices: 75991725--75991900 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75991715 TGTAACCCGC
* * *
75991725 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75991771 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75991821 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75991864 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75991901 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75993257 original size:16 final size:16
Alignment explanation
Indices: 75993236--75993266 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75993226 GATATTTTAA
75993236 TATATTATATTAATAT
1 TATATTATATTAATAT
*
75993252 TATATTATGTTAATA
1 TATATTATATTAATA
75993267 AAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATTATATTAATAT
Found at i:75995475 original size:18 final size:18
Alignment explanation
Indices: 75995452--75995541 Score: 101
Period size: 18 Copynumber: 5.0 Consensus size: 18
75995442 GGGGGTGTTA
75995452 CAGTAAT-GATCAATTATT
1 CAGTAATAG-TCAATTATT
* *
75995470 CAGTAATATTCAGTTATT
1 CAGTAATAGTCAATTATT
* *
75995488 CAGTAACAGTCAATTATC
1 CAGTAATAGTCAATTATT
*
75995506 CGGTAATAGTCAATTATT
1 CAGTAATAGTCAATTATT
* *
75995524 CAGTAATAATCAGTTATT
1 CAGTAATAGTCAATTATT
75995542 TTATACCTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (18 bp):
CAGTAATAGTCAATTATT
Found at i:75995727 original size:47 final size:47
Alignment explanation
Indices: 75995658--75995774 Score: 173
Period size: 47 Copynumber: 2.5 Consensus size: 47
75995648 CAGTAACAGT
* * * *
75995658 AACAGTAGCAGTATGGTACACAGAGTACCTCATCGGAACAAATCCGG
1 AACAGTAACAGTACGGTACACAGAGTACCTCATCGAAACAAATCCGA
*
75995705 AACAGTAACAGTACGGTACACAGAGTACCTCATCGAAACAAATCTGA
1 AACAGTAACAGTACGGTACACAGAGTACCTCATCGAAACAAATCCGA
75995752 AACAGTAACAGTAACGGTA-ACAG
1 AACAGTAACAGT-ACGGTACACAG
75995775 TAACAATATC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 58 0.91
48 6 0.09
ACGTcount: A:0.41, C:0.22, G:0.21, T:0.16
Consensus pattern (47 bp):
AACAGTAACAGTACGGTACACAGAGTACCTCATCGAAACAAATCCGA
Found at i:75995989 original size:17 final size:17
Alignment explanation
Indices: 75995955--75995987 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
75995945 CACTTTTCAG
75995955 TTTTCAATTAATTCATA
1 TTTTCAATTAATTCATA
75995972 TTTT-AATTAATT-ATA
1 TTTTCAATTAATTCATA
75995987 T
1 T
75995988 ATATTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTCAATTAATTCATA
Found at i:75996436 original size:20 final size:18
Alignment explanation
Indices: 75996402--75996439 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
75996392 AAACTTTCAA
75996402 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
75996420 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
75996440 ATTCCCTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 6 0.33
20 7 0.39
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:76001998 original size:34 final size:34
Alignment explanation
Indices: 76001955--76002078 Score: 185
Period size: 34 Copynumber: 3.6 Consensus size: 34
76001945 TTCTGATTTG
* *
76001955 ATATGACATTTTGATCTGATATATGTTTATAAAA
1 ATATGACATTTTGATATGATATATGTTTATGAAA
* *
76001989 ATATGACATTATGATATGATATATGTTTTTGAAA
1 ATATGACATTTTGATATGATATATGTTTATGAAA
* * *
76002023 ATATGACATTCTGATCTGATATATGTTTATGATA
1 ATATGACATTTTGATATGATATATGTTTATGAAA
76002057 ATATGACATTTTGATATGATAT
1 ATATGACATTTTGATATGATAT
76002079 TTGTAAAAGT
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 80 1.00
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (34 bp):
ATATGACATTTTGATATGATATATGTTTATGAAA
Found at i:76002312 original size:5 final size:5
Alignment explanation
Indices: 76002294--76002330 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
76002284 CGTTTTGGGC
*
76002294 TTTGT TTTGAT TTTTT TTTGT TTTGT TTTGT TTTGT T
1 TTTGT TTTG-T TTTGT TTTGT TTTGT TTTGT TTTGT T
76002331 CATTGATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.03, C:0.00, G:0.16, T:0.81
Consensus pattern (5 bp):
TTTGT
Found at i:76008265 original size:21 final size:21
Alignment explanation
Indices: 76008233--76008273 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
76008223 GAACATTTGG
76008233 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
76008254 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
76008274 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:76012313 original size:16 final size:16
Alignment explanation
Indices: 76012280--76012312 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
76012270 TTCGGTTGAA
*
76012280 TTGAGTTTTTAAATTT
1 TTGAATTTTTAAATTT
76012296 TTGAATTTTT-AATTT
1 TTGAATTTTTAAATTT
76012311 TT
1 TT
76012313 TTAATCAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (16 bp):
TTGAATTTTTAAATTT
Found at i:76014077 original size:45 final size:43
Alignment explanation
Indices: 76014008--76014451 Score: 356
Period size: 44 Copynumber: 9.9 Consensus size: 43
76013998 CGGTGAATTC
* *
76014008 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-AT
* *
76014052 AGCAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTTTAAATT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G----AAA-T
* * * *
76014104 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAAA-
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAT
* * * *
76014145 ACAAACCTTATCTCCTTGAAGTTGCAGTGGAACAGGTTGAAATT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-T
* *
76014189 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-AT
* * *
76014233 AGCAAATCTTATTTCCTTGAAGTTGCAGTGGAACAGATTGAAACTATAAATT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG-------AAA-T
* * * * *
76014285 ACAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGA-TCAAA-
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAT
* * * *
76014326 ACAAACCTTATCTTCCTGAAGTTGCAGTGGAGTAAATTGAAATT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-T
* * * *
76014370 ACAAGTCTTATCTCCCTGAAGTTGCAGCGGAGCAAATTGAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-AT
* * *
76014414 ACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
76014452 AAAGCAACAA
Statistics
Matches: 316, Mismatches: 58, Indels: 52
0.74 0.14 0.12
Matches are distributed among these distances:
41 57 0.18
42 8 0.03
43 6 0.02
44 107 0.34
45 67 0.21
48 1 0.00
50 2 0.01
51 60 0.19
52 8 0.03
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (43 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAT
Found at i:76014316 original size:181 final size:181
Alignment explanation
Indices: 76014003--76014444 Score: 717
Period size: 181 Copynumber: 2.4 Consensus size: 181
76013993 AAGATCGGTG
76014003 AATTCACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCC
1 AATT-ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCC
* *
76014068 CTGAAGTTGCAGTGGAACAGATTGAAGCTTTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTA
65 CTGAAGTTGCAGTGGAACAGATTGAAACTATAAATTACAGATCTTATCTCTCTGAAGTTGCAGTA
**
76014133 GAGCAGATCAAAACAAACCTTATC-TCCTTGAAGTTGCAGTGGAACAGGTTGA
130 GAGCAGATCAAAACAAACCTTATCTTCC-TGAAGTTGCAGTGGAACAAATTGA
*
76014185 AATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCT
1 AATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCC
*
76014250 TGAAGTTGCAGTGGAACAGATTGAAACTATAAATTACAGATCTTATCTCTCTGAAGTTGTAGTAG
66 TGAAGTTGCAGTGGAACAGATTGAAACTATAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAG
**
76014315 AGCAGATCAAAACAAACCTTATCTTCCTGAAGTTGCAGTGGAGTAAATTGA
131 AGCAGATCAAAACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAAATTGA
* * * * * * *
76014366 AATTACAAGTCTTATCTCCCTGAAGTTGCAGCGGAGCAAATTGAAGCTA-CTAATCCTATCTCCC
1 AATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCC
76014430 TGAAGTTGCAGTGGA
66 TGAAGTTGCAGTGGA
76014445 GCGGATTAAA
Statistics
Matches: 243, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
180 26 0.11
181 210 0.86
182 7 0.03
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (181 bp):
AATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCC
TGAAGTTGCAGTGGAACAGATTGAAACTATAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAG
AGCAGATCAAAACAAACCTTATCTTCCTGAAGTTGCAGTGGAACAAATTGA
Found at i:76014649 original size:16 final size:18
Alignment explanation
Indices: 76014618--76014650 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
76014608 GGACTAAAAC
76014618 GAAGCGACCTGAAGAAGA
1 GAAGCGACCTGAAGAAGA
76014636 GAAGC-ACC-GAAGAAG
1 GAAGCGACCTGAAGAAG
76014651 TCAAGACTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.45, C:0.18, G:0.33, T:0.03
Consensus pattern (18 bp):
GAAGCGACCTGAAGAAGA
Found at i:76017005 original size:3 final size:3
Alignment explanation
Indices: 76016990--76017044 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
76016980 GATTTTCTCA
* * * * *
76016990 ATT ATT GTT ATT ATT ATT GTTT ATT ATT ACT ATT ATT GTT AGT ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
76017036 ATT ATT ATT
1 ATT ATT ATT
76017045 GCCATTATTT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
3 39 0.95
4 2 0.05
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:76017015 original size:13 final size:12
Alignment explanation
Indices: 76016990--76017068 Score: 59
Period size: 12 Copynumber: 6.5 Consensus size: 12
76016980 GATTTTCTCA
76016990 ATTATTGTTATT
1 ATTATTGTTATT
76017002 ATTATTGTTTATT
1 ATTATTG-TTATT
* *
76017015 ATTACTATTATT
1 ATTATTGTTATT
* * *
76017027 GTTAGTATTATT
1 ATTATTGTTATT
**
76017039 ATTATTGCCATT
1 ATTATTGTTATT
* *
76017051 ATTTTTCTTATT
1 ATTATTGTTATT
*
76017063 ACTATT
1 ATTATT
76017069 ATATATATTT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
12 41 0.80
13 10 0.20
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.62
Consensus pattern (12 bp):
ATTATTGTTATT
Found at i:76018155 original size:3 final size:3
Alignment explanation
Indices: 76018147--76018171 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
76018137 TTTCAAAATG
76018147 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
76018172 TTACAACATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:76018962 original size:36 final size:37
Alignment explanation
Indices: 76018915--76018991 Score: 147
Period size: 36 Copynumber: 2.1 Consensus size: 37
76018905 TTTGAATAAC
76018915 AACATCGATCTGCGAAATGTGTTGATTATCAATCC-G
1 AACATCGATCTGCGAAATGTGTTGATTATCAATCCGG
76018951 AACATCGATCTGCGAAATGTGTTGATTATCAATCCGG
1 AACATCGATCTGCGAAATGTGTTGATTATCAATCCGG
76018988 AACA
1 AACA
76018992 ACCAATGCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 35 0.88
37 5 0.12
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (37 bp):
AACATCGATCTGCGAAATGTGTTGATTATCAATCCGG
Found at i:76024907 original size:15 final size:15
Alignment explanation
Indices: 76024889--76024925 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
76024879 ATATAGCAAG
76024889 CCATCAATGATTGAA
1 CCATCAATGATTGAA
*
76024904 CCATCAATGATTGGA
1 CCATCAATGATTGAA
76024919 CCATCAA
1 CCATCAA
76024926 ACATTTCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (15 bp):
CCATCAATGATTGAA
Found at i:76027430 original size:45 final size:45
Alignment explanation
Indices: 76027326--76027632 Score: 151
Period size: 45 Copynumber: 6.8 Consensus size: 45
76027316 GATCGGAATG
* * * *
76027326 TGCCATGGTGTCTTTCAACCATGGTCTTATTCATTTTCCGTCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCA-TTTCAGTCATGA
* *
76027372 TGCCATAGTGTCTTTCAACTATGGTCTTATTTC-TTTGATTCATGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTA-TTCATTTCAGTCATGA
* * * *** * *
76027417 TGTCATAGTGTCTTTCAAATATGGTCTTACTCGA-GAGAATCGTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTC-ATTTCAGTCATGA
* * * * ** * **
76027462 TGCCATAATGTCTTTC-ATTCATGGTCTTACTCGTTAGAATTTTGA
1 TGCCATAGTGTCTTTCAACT-ATGGTCTTATTCATTTCAGTCATGA
* * * * * * *
76027507 TGCCATAATGTCTTTC-AGTCATGATCTTACTCATTTGAATCGTGA
1 TGCCATAGTGTCTTTCAACT-ATGGTCTTATTCATTTCAGTCATGA
** * * * * * *
76027552 TGCCATAACGTCTTT-TAGTCATGGTCTTACTCGTTTGC-GT-GTGG
1 TGCCATAGTGTCTTTCAACT-ATGGTCTTATTCATTT-CAGTCATGA
*
76027596 TGCCATAGTGTCTTTCAACTATGGTCTTAATCATTTC
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTC
76027633 CTTCAAGCCA
Statistics
Matches: 215, Mismatches: 38, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
43 1 0.00
44 34 0.16
45 150 0.70
46 27 0.13
47 3 0.01
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.42
Consensus pattern (45 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCAGTCATGA
Found at i:76027487 original size:90 final size:88
Alignment explanation
Indices: 76027372--76027629 Score: 252
Period size: 90 Copynumber: 2.9 Consensus size: 88
76027362 TCCGTCATGT
* * * *
76027372 TGCCATAGTGTCTTTCAACTATGGTCTTATTTC-TTTGATTCATGATGTCATAGTGTCTTTCAAA
1 TGCCATAATGTCTTTCATC-ATGGTCTTA-CTCGTTTGATT-ATGATGCCATAGTGTCTTTCAAA
76027436 TATGGTCTTACTCGA-GAGAATCGTGA
63 TATGGTCTTACTC-ATGAGAATCGTGA
* * * *
76027462 TGCCATAATGTCTTTCATTCATGGTCTTACTCGTTAGAATTTTGATGCCATAATGTCTTTC-AGT
1 TGCCATAATGTCTTTCA-TCATGGTCTTACTCGTTTG-ATTATGATGCCATAGTGTCTTTCAAAT
* **
76027526 CATGATCTTACTCATTTGAATCGTGA
64 -ATGGTCTTACTCATGAGAATCGTGA
* * ** * * *
76027552 TGCCATAACGTCTTTTAGTCATGGTCTTACTCGTTTGCGTGTGGTGCCATAGTGTCTTTCAACTA
1 TGCCATAATGTCTTTCA-TCATGGTCTTACTCGTTTGATTATGATGCCATAGTGTCTTTCAAATA
*
76027617 TGGTCTTAATCAT
65 TGGTCTTACTCAT
76027630 TTCCTTCAAG
Statistics
Matches: 139, Mismatches: 23, Indels: 13
0.79 0.13 0.07
Matches are distributed among these distances:
89 35 0.25
90 100 0.72
91 4 0.03
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (88 bp):
TGCCATAATGTCTTTCATCATGGTCTTACTCGTTTGATTATGATGCCATAGTGTCTTTCAAATAT
GGTCTTACTCATGAGAATCGTGA
Found at i:76027670 original size:15 final size:15
Alignment explanation
Indices: 76027650--76027683 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76027640 CCAATAAGCT
76027650 CAATTA-ATATATAAA
1 CAATTATATAT-TAAA
76027665 CAATTATATATTAAA
1 CAATTATATATTAAA
76027680 CAAT
1 CAAT
76027684 CAAAAGCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (15 bp):
CAATTATATATTAAA
Found at i:76032381 original size:30 final size:30
Alignment explanation
Indices: 76032322--76032381 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
76032312 TTTTACGAGC
* *
76032322 CTAAGGGCAAAACTGTAATTTTGTAAAAGT
1 CTAAGGGCAAAACGGTAATTTTGCAAAAGT
* *
76032352 CTAAGGGCAAAACGGTCATTTTGCCAAAGT
1 CTAAGGGCAAAACGGTAATTTTGCAAAAGT
76032382 AGGAATTTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (30 bp):
CTAAGGGCAAAACGGTAATTTTGCAAAAGT
Found at i:76032782 original size:48 final size:48
Alignment explanation
Indices: 76032698--76032987 Score: 321
Period size: 48 Copynumber: 6.0 Consensus size: 48
76032688 ATACTAGGGT
* * * *
76032698 TATGTGAGCCAGTGTAAGACCATGTTTGGAAAATGGCATCGGCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* *
76032746 TATGAGAGCTAGTGTGAGACCATGTTTGGAACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* * * **
76032794 TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* * * *
76032842 TATGAGAGCTAGTGTAAGACCATCTCTGGGACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
* * * * ** * *
76032890 CATGTGGGCTAGTGTAAGACTATGTTTGGAACATGAAATCGACACCGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCG--A
* *
76032940 TATGAAAGCTAGTGTAAGACCATGTCT-GAGACATGGCATCGGCATCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGA-ACATGGCATCGGCATCGA
76032988 CATCTTACCC
Statistics
Matches: 195, Mismatches: 44, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
48 158 0.81
49 2 0.01
50 35 0.18
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATCGA
Found at i:76032862 original size:96 final size:96
Alignment explanation
Indices: 76032698--76032987 Score: 384
Period size: 96 Copynumber: 3.0 Consensus size: 96
76032688 ATACTAGGGT
* * *
76032698 TATGTGAGCCAGTGTAAGACCATGTTTGGAAAATGGCATCGGCATTGATATGAGAGCTAGTGTGA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
*
76032763 GACCATGTTTGGAACATGGCATCGGCCTCGA
66 GACCATGTCTGGAACATGGCATCGGCCTCGA
*
76032794 TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
* *
76032859 GACCATCTCTGGGACATGGCATCGGCCTCGA
66 GACCATGTCTGGAACATGGCATCGGCCTCGA
* * * * ** * ** *
76032890 CATGTGGGCTAGTGTAAGACTATGTTTGGAACATGAAATCGACACCGATATATGAAAGCTAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA--TTTATATGAGAGCTAGTGT
*
76032955 AAGACCATGTCT-GAGACATGGCATCGGCATCGA
64 AAGACCATGTCTGGA-ACATGGCATCGGCCTCGA
76032988 CATCTTACCC
Statistics
Matches: 170, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
96 125 0.74
97 1 0.01
98 44 0.26
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAA
GACCATGTCTGGAACATGGCATCGGCCTCGA
Found at i:76041964 original size:14 final size:14
Alignment explanation
Indices: 76041945--76041972 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76041935 ATCCCACCCC
76041945 AAATCAGATATAGA
1 AAATCAGATATAGA
76041959 AAATCAGATATAGA
1 AAATCAGATATAGA
76041973 TTCATCAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
AAATCAGATATAGA
Found at i:76043624 original size:22 final size:21
Alignment explanation
Indices: 76043592--76043647 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
76043582 GAACAGTACC
* *
76043592 ACACACCCGTGTGGTCTAAATG
1 ACACACTCGTGTGGT-TAAATA
**
76043614 ACACACTCGTGT-GTTCCATA
1 ACACACTCGTGTGGTTAAATA
76043634 ACACACTCGTGTGG
1 ACACACTCGTGTGG
76043648 GCACACTGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 15 0.52
21 3 0.10
22 11 0.38
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (21 bp):
ACACACTCGTGTGGTTAAATA
Found at i:76044668 original size:18 final size:17
Alignment explanation
Indices: 76044622--76044668 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
76044612 GTAGTAATCA
76044622 GTTATTCAGTAACGATC
1 GTTATTCAGTAACGATC
*
76044639 GTTGATTTAGTAAC-AGTC
1 GTT-ATTCAGTAACGA-TC
76044657 GGTTATTCAGTA
1 -GTTATTCAGTA
76044669 GCGGTCAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 4 0.16
18 18 0.72
19 3 0.12
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (17 bp):
GTTATTCAGTAACGATC
Found at i:76046033 original size:13 final size:12
Alignment explanation
Indices: 76046001--76046034 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
76045991 TTACTATATA
76046001 TATATAATAACT
1 TATATAATAACT
76046013 TA-ATAATATACT
1 TATATAATA-ACT
76046025 TATATAATAA
1 TATATAATAA
76046035 GTAAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:76053162 original size:79 final size:80
Alignment explanation
Indices: 76053044--76053255 Score: 229
Period size: 79 Copynumber: 2.7 Consensus size: 80
76053034 GCTCCTCGTT
* * *
76053044 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTTGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCC-TTCGGATCTTAACCCA
76053108 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
* **
76053124 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGATCTTAACCC
*
76053186 AGATTTAGTATCTCGCA
64 AGATTTAGTAACTCGCA
* * * * *
76053203 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGG
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGT-AATTCGCACAAATGCCTTCGG
76053256 GACTTAGCCC
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
78 10 0.09
79 58 0.51
80 35 0.31
81 9 0.08
82 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGATCTTAACCCAG
ATTTAGTAACTCGCA
Found at i:76053268 original size:40 final size:39
Alignment explanation
Indices: 76053044--76053268 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 39
76053034 GCTCCTCGTT
* *
76053044 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
* * * *
76053084 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
76053124 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAT-TCGCA
* * *
76053163 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAT-TCGCA
* * *
76053203 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-A-TTCGCA
76053244 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76053269 CATCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
38 3 0.02
39 30 0.19
40 113 0.71
41 12 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATTCGCA
Found at i:76063576 original size:18 final size:18
Alignment explanation
Indices: 76063555--76063592 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
76063545 GAATGTTAGC
76063555 AGGAATATTACAACATAG
1 AGGAATATTACAACATAG
76063573 AGGAATATTACAACATAG
1 AGGAATATTACAACATAG
76063591 AG
1 AG
76063593 AAAAAGAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.21
Consensus pattern (18 bp):
AGGAATATTACAACATAG
Found at i:76066136 original size:18 final size:18
Alignment explanation
Indices: 76066086--76066136 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
76066076 CTTGGCCCAT
*
76066086 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGTAATCAG
* *
76066104 TGCAGTAATAATAATCAG
1 TGCAGTAACAGTAATCAG
76066122 TGCAGTAACAGTAAT
1 TGCAGTAACAGTAAT
76066137 AGTACAGGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.24
Consensus pattern (18 bp):
TGCAGTAACAGTAATCAG
Found at i:76079435 original size:24 final size:24
Alignment explanation
Indices: 76079406--76079453 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
76079396 AATATGAAAA
76079406 TGAAAGTAAATGGACTTAAAGGGT
1 TGAAAGTAAATGGACTTAAAGGGT
76079430 TGAAAGTAAATGGACTTAAAGGGT
1 TGAAAGTAAATGGACTTAAAGGGT
76079454 AATTATTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.29, T:0.25
Consensus pattern (24 bp):
TGAAAGTAAATGGACTTAAAGGGT
Found at i:76082094 original size:21 final size:21
Alignment explanation
Indices: 76082068--76082107 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
76082058 AAATCTTTAG
76082068 TTCTATGAGTAGGATGCTTAA
1 TTCTATGAGTAGGATGCTTAA
76082089 TTCTATGAGTAGGATGCTT
1 TTCTATGAGTAGGATGCTT
76082108 GCCTAAGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (21 bp):
TTCTATGAGTAGGATGCTTAA
Found at i:76085198 original size:17 final size:19
Alignment explanation
Indices: 76085156--76085199 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
76085146 ATGAAATTTT
*
76085156 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
76085175 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
76085193 AA-TATTA
1 AATTATTA
76085200 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:76085312 original size:15 final size:15
Alignment explanation
Indices: 76085294--76085322 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
76085284 ATATTTATAA
76085294 AATTATTATTATTAT
1 AATTATTATTATTAT
76085309 AATTATTATTATTA
1 AATTATTATTATTA
76085323 GATAGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:76089330 original size:10 final size:10
Alignment explanation
Indices: 76089312--76089341 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
76089302 CTGAGTATTG
*
76089312 GTTGGAAGGA
1 GTTGAAAGGA
76089322 GTTGAAAGGA
1 GTTGAAAGGA
76089332 GTTGAAAGGA
1 GTTGAAAGGA
76089342 TCCTTGAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (10 bp):
GTTGAAAGGA
Found at i:76094075 original size:64 final size:64
Alignment explanation
Indices: 76093995--76094178 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
76093985 AGACATTATG
* *
76093995 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
76094059 ATGTAGCTAGGTCGCATGTGTGGCTTC-AGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
76094123 TAA
62 TAA
* * * *
76094126 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
76094179 CGAACTCTAT
Statistics
Matches: 98, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 22 0.22
65 6 0.06
66 17 0.17
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:76100654 original size:17 final size:17
Alignment explanation
Indices: 76100632--76100664 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76100622 GATAAGTATA
*
76100632 TATTGTCGTTGCATTTC
1 TATTGTCATTGCATTTC
76100649 TATTGTCATTGCATTT
1 TATTGTCATTGCATTT
76100665 AAATTTTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.55
Consensus pattern (17 bp):
TATTGTCATTGCATTTC
Found at i:76105196 original size:14 final size:14
Alignment explanation
Indices: 76105174--76105203 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76105164 AAAAAGTGGT
*
76105174 CCGATTGAACCGAA
1 CCGAGTGAACCGAA
76105188 CCGAGTGAACCGAA
1 CCGAGTGAACCGAA
76105202 CC
1 CC
76105204 AGCCAAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.10
Consensus pattern (14 bp):
CCGAGTGAACCGAA
Found at i:76116587 original size:16 final size:16
Alignment explanation
Indices: 76116568--76116600 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
76116558 ATAAAATGTA
76116568 ATTAAAAAATTATTTG
1 ATTAAAAAATTATTTG
76116584 ATTAAAAAATTATTTG
1 ATTAAAAAATTATTTG
76116600 A
1 A
76116601 CCCATGGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTAAAAAATTATTTG
Found at i:76119196 original size:48 final size:48
Alignment explanation
Indices: 76119125--76119356 Score: 302
Period size: 48 Copynumber: 4.8 Consensus size: 48
76119115 GTATCATGGA
* * * *
76119125 ATGTGTGCTAGAGTAAGACCATGTTTGGGACATGGCATCGGCGATGAT
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
*
76119173 ATGTGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAATGAT
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
*
76119221 ATGTGTGCCAGTGTAAGACCATGTGTGGGACATGGCATCGGCAATGAT
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
* * * * * * **
76119269 CTGTATGTCAGTGTAAGACCATATTTGGGATATGGCATCGGTGATGAT
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
* * * *
76119317 ATGTTTGCTAGTATAAAACCATGTCTGGGACATGGCATCG
1 ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
76119357 ACACTGACAT
Statistics
Matches: 160, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 160 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (48 bp):
ATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGAT
Found at i:76119382 original size:96 final size:96
Alignment explanation
Indices: 76119125--76119398 Score: 268
Period size: 96 Copynumber: 2.9 Consensus size: 96
76119115 GTATCATGGA
* * * * * * * *
76119125 ATGTGTGCTAG-AGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCCAGTGTAA
1 ATGTGTGCCAGTA-TAAAACCATGTCTGGGACATGGCATCGACAATGATCTGTATGACAGTGTAA
* * *
76119189 GACCATGTCTAGGACATGGCATCGGCAATGAT
65 GACCATATCTGGGATATGGCATCGGCAATGAT
* * * * *
76119221 ATGTGTGCCAGTGTAAGACCATGTGTGGGACATGGCATCGGCAATGATCTGTATGTCAGTGTAAG
1 ATGTGTGCCAGTATAAAACCATGTCTGGGACATGGCATCGACAATGATCTGTATGACAGTGTAAG
* **
76119286 ACCATATTTGGGATATGGCATCGGTGATGAT
66 ACCATATCTGGGATATGGCATCGGCAATGAT
* * * *
76119317 ATGTTTGCTAGTATAAAACCATGTCTGGGACATGGCATCGACACTGA-CATG-A-GACATTGCAT
1 ATGTGTGCCAGTATAAAACCATGTCTGGGACATGGCATCGACAATGATC-TGTATGACAGTG--T
*
76119379 AAGACCATATCCGGGATATG
63 AAGACCATATCTGGGATATG
76119399 ACAACGATAT
Statistics
Matches: 150, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
94 5 0.03
95 2 0.01
96 143 0.95
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (96 bp):
ATGTGTGCCAGTATAAAACCATGTCTGGGACATGGCATCGACAATGATCTGTATGACAGTGTAAG
ACCATATCTGGGATATGGCATCGGCAATGAT
Found at i:76119706 original size:6 final size:6
Alignment explanation
Indices: 76119695--76119722 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
76119685 ATGAATAAAC
76119695 TTATGT TTATGT TTATGT TTATGT TTAT
1 TTATGT TTATGT TTATGT TTATGT TTAT
76119723 TATGTCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.68
Consensus pattern (6 bp):
TTATGT
Found at i:76126521 original size:27 final size:27
Alignment explanation
Indices: 76126498--76126554 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
76126488 AAATATTCTC
76126498 TAAATTAAT-AAATATTAATTTATTGA
1 TAAATTAATAAAATATTAATTTATTGA
* *
76126524 TAAATTAATAAAATATTCATTTATCGA
1 TAAATTAATAAAATATTAATTTATTGA
76126551 TAAA
1 TAAA
76126555 CAATTAGCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (27 bp):
TAAATTAATAAAATATTAATTTATTGA
Found at i:76129412 original size:62 final size:62
Alignment explanation
Indices: 76129336--76129461 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
76129326 CTGGTAAAAG
76129336 ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
1 ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
76129398 ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
1 ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
76129460 AT
1 AT
76129462 GAACCCCATG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (62 bp):
ATACACCACCTATGGCTATGCAATATATAGGTTAGTTAGCTTAACTTATTCCTGTTCAATTC
Found at i:76132334 original size:23 final size:23
Alignment explanation
Indices: 76132307--76132367 Score: 104
Period size: 23 Copynumber: 2.7 Consensus size: 23
76132297 GTGTCCCTAA
*
76132307 GCACACGGGTGTGTGTTTTACCT
1 GCACACGGGCGTGTGTTTTACCT
76132330 GCACACGGGCGTGTGTTTTACCT
1 GCACACGGGCGTGTGTTTTACCT
*
76132353 CCACACGGGCGTGTG
1 GCACACGGGCGTGTG
76132368 AGGCATAACC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.13, C:0.26, G:0.33, T:0.28
Consensus pattern (23 bp):
GCACACGGGCGTGTGTTTTACCT
Found at i:76145264 original size:49 final size:51
Alignment explanation
Indices: 76145131--76145271 Score: 196
Period size: 51 Copynumber: 2.8 Consensus size: 51
76145121 TCTATTGTGA
76145131 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT
* * * * ** *
76145182 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAA-T-T
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT
*
76145231 GGTCGCATGTGTAGTACTAAGTGCAGGCAACTATGCGTACC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
76145272 AGATAGCTTC
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 36 0.47
50 1 0.01
51 40 0.52
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT
Found at i:76147281 original size:32 final size:34
Alignment explanation
Indices: 76147245--76147309 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
76147235 TAACAGTGGT
*
76147245 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
76147277 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
76147310 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:76149185 original size:26 final size:26
Alignment explanation
Indices: 76149154--76149261 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
76149144 TGAAATGCCC
*
76149154 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
76149180 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
76149206 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
76149232 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76149258 ATCA
1 ATCA
76149262 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76151155 original size:12 final size:12
Alignment explanation
Indices: 76151134--76151166 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
76151124 ATTCTGCCTG
76151134 ATAA-AAAAATA
1 ATAATAAAAATA
76151145 ATAATAAAAATA
1 ATAATAAAAATA
*
76151157 AAAATAAAAA
1 ATAATAAAAA
76151167 AATTGGTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (12 bp):
ATAATAAAAATA
Found at i:76151411 original size:15 final size:15
Alignment explanation
Indices: 76151391--76151455 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
76151381 GTATCTTAGG
76151391 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
76151406 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
76151421 TTT-TTCTA-TCTTAGA
1 TTTCTT-TATTC-TGGA
*
76151436 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
76151450 TTTCTT
1 TTTCTT
76151456 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 12 0.29
15 26 0.63
16 3 0.07
ACGTcount: A:0.11, C:0.12, G:0.12, T:0.65
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:76153664 original size:51 final size:51
Alignment explanation
Indices: 76153598--76153775 Score: 243
Period size: 51 Copynumber: 3.5 Consensus size: 51
76153588 TGAGGTCGCA
* *
76153598 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
76153649 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
* * * ** * * *
76153700 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-T-TGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
*
76153749 TGTGTAGTACTAAGCGCAGGCTACTAT
1 TGTGTAGTACTAAGTGCAGGCTACTAT
76153776 AGTACCAGAT
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
49 30 0.26
50 1 0.01
51 84 0.73
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
Found at i:76164185 original size:20 final size:19
Alignment explanation
Indices: 76164149--76164199 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
76164139 AAGGGTTATT
*
76164149 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
76164168 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
76164188 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
76164200 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:76172099 original size:18 final size:18
Alignment explanation
Indices: 76172078--76172143 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 18
76172068 AGAATGAGAG
76172078 AATGAAAGAGAAATATTA
1 AATGAAAGAGAAATATTA
* *
76172096 AATGAAGGATGAATGATATGAGA
1 AATGAAAGA-GAA--ATAT--TA
76172119 GAATGAAAGAGAAATATTA
1 -AATGAAAGAGAAATATTA
76172138 AATGAA
1 AATGAA
76172144 GGATGAATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
18 14 0.37
19 4 0.11
21 8 0.21
23 4 0.11
24 8 0.21
ACGTcount: A:0.56, C:0.00, G:0.23, T:0.21
Consensus pattern (18 bp):
AATGAAAGAGAAATATTA
Found at i:76172118 original size:42 final size:42
Alignment explanation
Indices: 76172071--76172154 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
76172061 GAATGAGAGA
76172071 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
1 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
76172113 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
1 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
76172155 GGATGATTGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.52, C:0.00, G:0.26, T:0.21
Consensus pattern (42 bp):
ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
Found at i:76177291 original size:29 final size:29
Alignment explanation
Indices: 76177247--76177310 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
76177237 TTAAACCCCA
* * *
76177247 AATGTGTCCCTTTCTTCTTGCTACAATAG
1 AATGTATCCCTCTCTTCTTGCTACAACAG
76177276 AATGTATCCCTCTCTTCTTGCTACAACAG
1 AATGTATCCCTCTCTTCTTGCTACAACAG
76177305 AATGTA
1 AATGTA
76177311 CCAAAAGCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (29 bp):
AATGTATCCCTCTCTTCTTGCTACAACAG
Found at i:76186453 original size:39 final size:40
Alignment explanation
Indices: 76186243--76186473 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
76186233 GGATATAACT
* * *
76186243 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
76186283 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
76186323 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
76186363 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
76186403 ACTCGCACAGATGCCTTCGGGACTTAGCCCGGA-TTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
76186442 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
76186474 TTTTCATCCA
Statistics
Matches: 174, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 34 0.20
40 138 0.79
41 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:76194681 original size:39 final size:40
Alignment explanation
Indices: 76194472--76194702 Score: 313
Period size: 40 Copynumber: 5.8 Consensus size: 40
76194462 GGATATAACT
* * *
76194472 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
76194512 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
76194552 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
76194592 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
76194632 ACTCGCACAGATGCCTTCGGGACTCAGCCTGGA-TTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
76194671 ACTAGTACAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
76194703 TTTTCATCCA
Statistics
Matches: 171, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 33 0.19
40 136 0.80
41 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:76201763 original size:40 final size:40
Alignment explanation
Indices: 76201703--76201922 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
76201693 TAATCAGATG
*
76201703 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
**
76201743 ATATTTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
76201786 ATACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
76201826 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
76201866 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
76201906 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
76201923 AAAGATACTT
Statistics
Matches: 158, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 9 0.06
40 113 0.72
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:76201848 original size:83 final size:80
Alignment explanation
Indices: 76201709--76201922 Score: 270
Period size: 83 Copynumber: 2.6 Consensus size: 80
76201699 GATGATATCT
* ** **
76201709 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATTTGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
*
76201774 CGAGTAGTTACTATACCC
66 C---TAGTGACTATACCC
* *
76201792 GGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
*
76201857 CTAGTGACTATATCC
66 CTAGTGACTATACCC
* * *
76201872 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCC
76201923 AAAGATACTT
Statistics
Matches: 117, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 10 0.09
80 46 0.39
81 2 0.02
83 59 0.50
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
CTAGTGACTATACCC
Found at i:76203752 original size:43 final size:43
Alignment explanation
Indices: 76203696--76203868 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
76203686 GACATAGGAT
* * *
76203696 TCGATATGTGTTTTCGTGTAAGACCATGTGTGGGACGTTGGCA
1 TCGATATCTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
* * * * *
76203739 TCGACT-TCTGTTTTACGTGTAAGAACATGTATGGGACATCGGCA
1 TCGA-TATCTGATTT-CGTGTAAGACCATGTCTGGGACGTTGGCA
*
76203783 TCG-TATCTGATTTCGTGTAAGACCCTGTCTGGGACAG-TGGCA
1 TCGATATCTGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCA
* * * * * *
76203825 TCGATGTTTGATTACATGTAAGACTACGTCTGGGACGTTGGCA
1 TCGATATCTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
76203868 T
1 T
76203869 TGTATATTTT
Statistics
Matches: 106, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
42 28 0.26
43 49 0.46
44 29 0.27
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
TCGATATCTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
Found at i:76203816 original size:42 final size:41
Alignment explanation
Indices: 76203707--76203828 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 41
76203697 CGATATGTGT
* * *
76203707 TTTCGTGTAAGACCATGTGTGGGACGTTGGCATCGACTTCTGT
1 TTTCGTGTAAGACCATGTATGGGAC-ATGGCATCGAC-TCTGA
*
76203750 TTTACGTGTAAGAACATGTATGGGACATCGGCATCGTA-TCTGA
1 TTT-CGTGTAAGACCATGTATGGGACAT-GGCATCG-ACTCTGA
* *
76203793 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGA
1 TTTCGTGTAAGACCATGTATGGGACA-TGGCATCGA
76203829 TGTTTGATTA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.40
43 12 0.18
44 27 0.40
45 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (41 bp):
TTTCGTGTAAGACCATGTATGGGACATGGCATCGACTCTGA
Found at i:76209328 original size:88 final size:88
Alignment explanation
Indices: 76209144--76209317 Score: 244
Period size: 88 Copynumber: 2.0 Consensus size: 88
76209134 GTGAATTATG
* * * *
76209144 ATATGTGATGTGTGAGTAAGACCATGGCATTGATGCTTGATTCCTATATATGTTTGCGAGTAAGA
1 ATATGTGATGTGCGAGTAAGACCATGGCATCGATGATTGATTCCTATATATGTGTGCGAGTAAGA
*
76209209 CCACGTTTAATACGTTGGCATCA
66 CCACATTTAATACGTTGGCATCA
*
76209232 ATATGTGATGTGCGAGTAAGGCCATGGCATCGAT-ATGTGATT-CTGATATATGTGTGCGAGTAA
1 ATATGTGATGTGCGAGTAAGACCATGGCATCGATGAT-TGATTCCT-ATATATGTGTGCGAGTAA
* *
76209295 GTCCACATTTTATACGTTGGCAT
64 GACCACATTTAATACGTTGGCAT
76209318 TGAAATGTGA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
87 3 0.04
88 73 0.96
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (88 bp):
ATATGTGATGTGCGAGTAAGACCATGGCATCGATGATTGATTCCTATATATGTGTGCGAGTAAGA
CCACATTTAATACGTTGGCATCA
Found at i:76220293 original size:40 final size:40
Alignment explanation
Indices: 76219905--76220292 Score: 632
Period size: 40 Copynumber: 9.7 Consensus size: 40
76219895 GCAAACACAC
* * * *
76219905 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCCTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
**
76219945 TTGCCTTCGGGTCTTAGCCCGGATATATCGTCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
76219985 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
76220025 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
**
76220065 TTGCCTTCGGGTCTTAGCCCGGATATATCGTCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
76220105 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
76220145 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
76220185 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
76220225 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
76220265 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
76220293 TCCAATGCTC
Statistics
Matches: 323, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 323 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:76223451 original size:94 final size:94
Alignment explanation
Indices: 76223290--76223471 Score: 355
Period size: 94 Copynumber: 1.9 Consensus size: 94
76223280 CAAATTCGAA
76223290 TACATCGCCAATCAAACTATGTTCATTAATTACAAATCATACATAAGATTATATGAACTTCTTTA
1 TACATCGCCAATCAAACTATGTTCATTAATTACAAATCATACATAAGATTATATGAACTTCTTTA
76223355 TAAACACTTCTAAACTCGAACATATTCAT
66 TAAACACTTCTAAACTCGAACATATTCAT
*
76223384 TACATCGCCAATCAAACTATGTTCATTTATTACAAATCATACATAAGATTATATGAACTTCTTTA
1 TACATCGCCAATCAAACTATGTTCATTAATTACAAATCATACATAAGATTATATGAACTTCTTTA
76223449 TAAACACTTCTAAACTCGAACAT
66 TAAACACTTCTAAACTCGAACAT
76223472 CCATAATTCT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 87 1.00
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.34
Consensus pattern (94 bp):
TACATCGCCAATCAAACTATGTTCATTAATTACAAATCATACATAAGATTATATGAACTTCTTTA
TAAACACTTCTAAACTCGAACATATTCAT
Found at i:76231628 original size:17 final size:18
Alignment explanation
Indices: 76231594--76231629 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
76231584 CATATTAAGG
*
76231594 GCCCGTGTGAGCCTACAC
1 GCCCGTGTGAGCCCACAC
76231612 GCCCGTGT-AGCCCACAC
1 GCCCGTGTGAGCCCACAC
76231629 G
1 G
76231630 GCCCAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.42, G:0.28, T:0.14
Consensus pattern (18 bp):
GCCCGTGTGAGCCCACAC
Found at i:76231633 original size:18 final size:19
Alignment explanation
Indices: 76231593--76231633 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
76231583 CCATATTAAG
*
76231593 GGCCCGTGTGAGCCTACAC
1 GGCCCGTGTGAGCCCACAC
76231612 -GCCCGTGT-AGCCCACAC
1 GGCCCGTGTGAGCCCACAC
76231629 GGCCC
1 GGCCC
76231634 AAAATAACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (19 bp):
GGCCCGTGTGAGCCCACAC
Found at i:76234986 original size:39 final size:39
Alignment explanation
Indices: 76234943--76235109 Score: 235
Period size: 39 Copynumber: 4.3 Consensus size: 39
76234933 GGTCTTTAAC
** * *
76234943 CCGGATATTTTTCCAGCACGTAGCCTGTGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
76234982 CCGGATATATTTCTAGCATATAGGCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* *
76235021 CCAGATATTTTTCCAGCATATAGCCTGTGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
76235060 CCGGATATTTTTCCAACATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
76235099 CCAGATATTTT
1 CCGGATATTTT
76235110 CAATCTCATA
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.32
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Done.