Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 232 of 316
Found at i:76235062 original size:78 final size:78
Alignment explanation
Indices: 76234946--76235109 Score: 265
Period size: 78 Copynumber: 2.1 Consensus size: 78
76234936 CTTTAACCCG
* * * *
76234946 GATATTTTTCCAGCACGTAGCCTGTGGACCTCAAGTCCGGATATATTTCTAGCATATAGGCTGCG
1 GATATTTTTCCAGCACATAGCCTGTGGACCTCAAGTCCGGATATATTTCCAACATATAGCCTGCG
76235011 GACCTCATGTCCA
66 GACCTCATGTCCA
* * *
76235024 GATATTTTTCCAGCATATAGCCTGTGGACCTCATGTCCGGATATTTTTCCAACATATAGCCTGCG
1 GATATTTTTCCAGCACATAGCCTGTGGACCTCAAGTCCGGATATATTTCCAACATATAGCCTGCG
76235089 GACCTCATGTCCA
66 GACCTCATGTCCA
76235102 GATATTTT
1 GATATTTT
76235110 CAATCTCATA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (78 bp):
GATATTTTTCCAGCACATAGCCTGTGGACCTCAAGTCCGGATATATTTCCAACATATAGCCTGCG
GACCTCATGTCCA
Found at i:76238944 original size:763 final size:759
Alignment explanation
Indices: 76237449--76240075 Score: 3579
Period size: 762 Copynumber: 3.5 Consensus size: 759
76237439 CAAATGTAAC
* * * * * *
76237449 ACCCCTAACCAGTATCCATCGACGTACTAAGGTTAAGAAGCATTATCGGACATATCAAAACATTT
1 ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATTT
* *
76237514 CGCAACCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGACC
66 CGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGTCC
* * * * *
76237579 CTTTCTTAGGTCAATGAGACCATAAACTTGCATCAGGAAGAGGTCGGGACTAAACCGAACATATT
131 ATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACA-G
* *
76237644 A-AAAATTTTTCTGAAACTTAACAATTTTTCTAAGTTACAAAGATCACATGCCCGTGTGAGCAGA
195 ACAAAATTTTTCTGAAACTTAACAATTTTTCTAAGCTACAAAGATCACATGCCCATGTGAGCAGA
* * *
76237708 CCGTGTGCCTCACACGACATTAGCCACGCCCATGTGTCTAGGCCATGGTGAAATAGGGCATACAT
260 CCGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACAT
*
76237773 ACTAACTTATCCACACGGCCACAAGACACGCCCGTGTGTCTAGCCCGTGGTTGAAACTGACTTGG
325 ACTAACTTATCCACACGGCCACAAGACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTGG
* * *
76237838 CCACACAGACTGGCACA-----------CGC-CCGTGTGGTCTGCCCAGGCTCATTTCGAAATGG
390 CCACACAGCCTGGCACACGCTTGGTGTTCGCACCGTGTGGTCTACCCAAGCTCATTTCGAAATGG
* * * * *
76237891 CCCTCGAGCAACACGACAGAGACACACACCCATGTCACTGCCCGTGTGGGTAAAAATAGACCATT
455 CCCTCGAGCAACACGACAGAGACACACGCCCGTG-CCCTGCCCGTGTGGGAAAAAATAGGCCATT
* * *
76237956 TACAAGGCCAATATGCCACCCATTTGGGTCCTCCCTGCAACTCCAAAATCAGGCATCATATATGC
519 TACAAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATATATGC
* *
76238021 AACATTTTCAGCCAAACTCAACTCCAAACATGTATCAATCAATTCATAATATCACCAACAAATTT
584 AACATTTTCAGCCAAATTCAACTCCAAACATGTATCAATCAATTCATAATATCATCAACAAATTT
* * * *
76238086 CATGCTCAATCGATATATCAAAGCATATTAAAATCACATGCTAAAGC-TTACCAAATTCCTAACT
649 CATGCTCATTCTATATATCAAAGCATATTAAAATCACATGCTAAA-CATTACCAAATTCCCAAAT
* * *
76238150 ATGAACATACTAAACTGACCATTTCACTTGGCCATATACATATATAT
713 ATGGACATACCAAAATGACCATTTCACTTGGCCATATACATATATAT
***
76238197 ACCCCTAACCCGTATCCATCG-CTGGACTAGGGTTAAGAGGCATTACCGGACATATTGGAACATT
1 ACCCCTAACCCGTATCCATCGTC-GGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATT
* * * ** *
76238261 TTGCAATTATTTCACAATCAAAAGTCATCCATTGTCATATCATAGTCAAACATCAATATTAAGTC
65 TCGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGTC
* *
76238326 CATTCCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAT
130 CATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAG
* * * * *
76238391 ACAAAATTTTTTTGAAACATAACAATTTTTCTAAGTTACAAAGATCACATGCCCATGTGACCAAA
195 ACAAAATTTTTCTGAAACTTAACAATTTTTCTAAGCTACAAAGATCACATGCCCATGTGAGCAGA
* * * * *
76238456 TCGTGTGCCTTACACGGCATTGGACAAGCCCATGTGTCTAGGCTATGGCGAAATAGGGCATACAT
260 CCGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACAT
* * * *
76238521 ACTAACTTATCCACACGGCCCACAAGACACGCCAGTGTTTCTAGCCCATGGTCGAAACTGACTTT
325 ACTAACTTATCCACACGG-CCACAAGACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTG
* * * * *
76238586 GCCAAAGAGCCTGGCACACGCTTGTGTGTTCGCAACCGTGTGGGCTACCCAAGCTCATTACAAAA
389 GCCACACAGCCTGGCACACGCTTG-GTGTTCGC-ACCGTGTGGTCTACCCAAGCTCATTTCGAAA
* * * * * * *
76238651 TGGCCCTCAAGCAACACGACCGAGACACATGCCCGTGCCGCTACCCATGCGGGCAAAAATAGGCC
452 TGGCCCTCGAGCAACACGACAGAGACACACGCCCGTGCC-CTGCCCGTGTGGGAAAAAATAGGCC
*
76238716 ATTTACTAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATATA
516 ATTTACAAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATATA
* *
76238781 TGAAACATTTTCAGCCAAATTCAACTCCAAACATGTATCAATCAATTCATAATATCATCAACCAA
581 TGCAACATTTTCAGCCAAATTCAACTCCAAACATGTATCAATCAATTCATAATATCATCAACAAA
* *
76238846 TTTCATGCTCATTCTTTATATCAAAGTATATTAAAATCACATGCTAAACATTACCAAATTCCCAA
646 TTTCATGCTCATTCTATATATCAAAGCATATTAAAATCACATGCTAAACATTACCAAATTCCCAA
*
76238911 ATATGGACATACCAAAATGACCATTTCACTTGGCCATATACATATATGT
711 ATATGGACATACCAAAATGACCATTTCACTTGGCCATATACATATATAT
* * *
76238960 ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACAGGGCATATCAGAACATTT
1 ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATTT
* * * ** * * *
76239025 CGTAATCATTTCACAATCAATAGTCATGTATTGTCATATCGTAGTCAAA-ATTTAACATTAAGCC
66 CGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACA-TCAACATTAAGTC
* * * *
76239089 CATTTCTTAGGTCAATGAGACCATAAACATGTATTAGGAAGAGGTCAGGACTAAACAGATCACAG
130 CATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAG
* *
76239154 ACAAAATTTTTCTGAAACTTAACCATTTTCCTAAGCTACAAAGATCACACT-CCCATGTGAGCAG
195 ACAAAATTTTTCTGAAACTTAACAATTTTTCTAAGCTACAAAGATCACA-TGCCCATGTGAGCAG
* * ** * * * *
76239218 ACTGTGTGCCTCACACGGCATTAGACACTCCTGTGTGTCTAGGTCGTGGTGAAACAGGGCATACA
259 ACCGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACA
* * * * *
76239283 TACTGACTTATCCACATGACCACAAGACACGCCCTTGTGTCTAGCCCGTGGTCGAAACTTACTTG
324 TACTAACTTATCCACACGGCCACAAGACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTG
* * *
76239348 GCCACACAGCCTGGCACACGCTGGTGCGTGTTTG-ACTGTGTGGTCTA-CCAAGGGTCATTTCGA
389 GCCACACAGCCTGGCACACGCT--TG-GTGTTCGCACCGTGTGGTCTACCCAA-GCTCATTTCGA
* * * *
76239411 GATGGCCCTCGAGCAACACGGCAGAGACACACGCCCGTGTCCTTGCCCGTGTGGTAAAAAATAGG
450 AATGGCCCTCGAGCAACACGACAGAGACACACGCCCGTG-CCCTGCCCGTGTGGGAAAAAATAGG
* * *
76239476 CCATTTAAAAGGACAATATGCCACCCATTTGGATCCTCCCTACAATTCCAAAATCAAGCATCATA
514 CCATTTACAAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATA
* * *
76239541 TATGCAACATTTTTAGCCAAATTCAAC-CTCAAACATGTATCAATCAATTCATAACATCATCAAG
579 TATGCAACATTTTCAGCCAAATTCAACTC-CAAACATGTATCAATCAATTCATAATATCATCAAC
* * **
76239605 AAATTTCGTGCTCATTCTCTATATCAAAGCATATTAAAATCACATTATAAACATTACCAAATT-C
643 AAATTTCATGCTCATTCTATATATCAAAGCATATTAAAATCACATGCTAAACATTACCAAATTCC
*
76239669 CAAACTATGGACATACCAAAATGACCATTTCACTTGGCCAGATACATATATAT
708 CAAA-TATGGACATACCAAAATGACCATTTCACTTGGCCATATACATATATAT
* * *
76239722 ACCCCTAACCCATATCCATCGTCGGACTAGGGTTAAGAGGCATTAACGGACATATCGAAACATTT
1 ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATTT
** * * * ** **
76239787 CATAATTATTTCAAAATCAATAGTCATTTATCATCATATCATAGTCAAACATTTACATTAAGTCC
66 CGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGTCC
* *
76239852 CTTTCTTAGGTCAATGATACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAGA
131 ATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAGA
* *
76239917 CAAAATTTTT-TCGAAACTTAACAATTTTTCTAAGCTACAAATATCACATGCCCGTGTGAGCAGA
196 CAAAATTTTTCT-GAAACTTAACAATTTTTCTAAGCTACAAAGATCACATGCCCATGTGAGCAGA
* * * *
76239981 CCTTGTGCCTCACACGGCATTAGACACGCCCGTGTGTCTAGGCCGTGGCAAAATAGGGCATACAT
260 CCGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACAT
*
76240046 ACTGACTTATCCACACGGCCACAAGACACG
325 ACTAACTTATCCACACGGCCACAAGACACG
76240076 TGTAACATCC
Statistics
Matches: 1652, Mismatches: 196, Indels: 48
0.87 0.10 0.03
Matches are distributed among these distances:
747 3 0.00
748 303 0.18
749 56 0.03
761 15 0.01
762 668 0.40
763 597 0.36
764 10 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (759 bp):
ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATTT
CGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGTCC
ATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAGA
CAAAATTTTTCTGAAACTTAACAATTTTTCTAAGCTACAAAGATCACATGCCCATGTGAGCAGAC
CGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACATA
CTAACTTATCCACACGGCCACAAGACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTGGC
CACACAGCCTGGCACACGCTTGGTGTTCGCACCGTGTGGTCTACCCAAGCTCATTTCGAAATGGC
CCTCGAGCAACACGACAGAGACACACGCCCGTGCCCTGCCCGTGTGGGAAAAAATAGGCCATTTA
CAAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATATATGCAA
CATTTTCAGCCAAATTCAACTCCAAACATGTATCAATCAATTCATAATATCATCAACAAATTTCA
TGCTCATTCTATATATCAAAGCATATTAAAATCACATGCTAAACATTACCAAATTCCCAAATATG
GACATACCAAAATGACCATTTCACTTGGCCATATACATATATAT
Found at i:76243763 original size:15 final size:15
Alignment explanation
Indices: 76243743--76243775 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
76243733 TTTCGAATCT
76243743 ATTCTTTATTTCGGG
1 ATTCTTTATTTCGGG
76243758 ATTCTTTATTTCGGG
1 ATTCTTTATTTCGGG
76243773 ATT
1 ATT
76243776 TAGAACAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.18, T:0.55
Consensus pattern (15 bp):
ATTCTTTATTTCGGG
Found at i:76244682 original size:27 final size:26
Alignment explanation
Indices: 76244581--76244692 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
76244571 AGGAAGCGTC
* * *
76244581 CTGGTGGCTATACCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
*
76244609 CT-GTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
76244635 TTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
76244663 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
76244689 CTGG
1 CTGG
76244693 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.03
26 13 0.18
27 40 0.55
28 18 0.25
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:76252421 original size:27 final size:26
Alignment explanation
Indices: 76252360--76252472 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
76252350 AGGAAGCGTC
* * *
76252360 CTGGTGGCTATACCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
76252388 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
76252415 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
76252443 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
76252469 CTGG
1 CTGG
76252473 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.09
27 38 0.51
28 30 0.40
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:76254376 original size:42 final size:43
Alignment explanation
Indices: 76254277--76254436 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
76254267 ACCTTGTACA
* * * **
76254277 ATGCCAACGTCCCAGACGTGGTCTTATATGTGATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
76254320 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
76254362 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCA-AATATCG
* *
76254406 ATGCCAACGTCTCAGACGTGGTCTTACACGA
1 ATGCCAACGTCCCAGACATGGTCTTACACGA
76254437 TAACACATAT
Statistics
Matches: 98, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
42 30 0.31
43 39 0.40
44 29 0.30
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:76256950 original size:42 final size:41
Alignment explanation
Indices: 76256860--76256970 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 41
76256850 TACCGTATCA
* * *
76256860 ATGCCATATCCCGAATATGGTCTTACATGAAATATCATATCG
1 ATGCCATATCCC-AATATGGTCTTATATGAAATATCACACCG
* * *
76256902 ACGCCATGTCCCTAACATGGTCTTATATGAAATCA-CACACCG
1 ATGCCATATCCC-AATATGGTCTTATATGAAAT-ATCACACCG
76256944 ATGCCATATCCCAGATATGGTCTTATA
1 ATGCCATATCCCA-ATATGGTCTTATA
76256971 CAGAATCTCA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.02
42 55 0.96
43 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAATATGGTCTTATATGAAATATCACACCG
Found at i:76262506 original size:27 final size:27
Alignment explanation
Indices: 76262476--76262653 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76262466 ATATTGAGTC
* * * *
76262476 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
76262503 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76262530 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76262558 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76262585 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76262612 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76262639 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76262654 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76262615 original size:82 final size:81
Alignment explanation
Indices: 76262497--76262652 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76262487 TGCTATATAA
* *
76262497 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76262562 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76262579 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76262643 CACTTAGTGC
65 CACTTAGTGC
76262653 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76265915 original size:47 final size:47
Alignment explanation
Indices: 76265861--76266506 Score: 1103
Period size: 47 Copynumber: 13.6 Consensus size: 47
76265851 TATTTGAATA
76265861 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76265908 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76265957 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76266004 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76266051 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
76266100 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76266147 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
76266196 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76266243 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76266290 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
76266339 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76266386 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
76266433 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
76266480 GATGTGAAAGTGTATAAATATGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
76266507 TCCCGAAGGG
Statistics
Matches: 572, Mismatches: 19, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
47 388 0.68
49 184 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:76265969 original size:96 final size:94
Alignment explanation
Indices: 76265861--76266506 Score: 1103
Period size: 96 Copynumber: 6.8 Consensus size: 94
76265851 TATTTGAATA
76265861 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
76265926 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
76265957 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76266022 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
76266051 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
76266116 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
76266147 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
76266212 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
76266243 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
76266308 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
76266339 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76266404 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
76266433 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
76266498 TATGATAAG
66 TGTGATAAG
76266507 TCCCGAAGGG
Statistics
Matches: 528, Mismatches: 18, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
94 193 0.37
96 335 0.63
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:76266119 original size:143 final size:143
Alignment explanation
Indices: 76265861--76266501 Score: 1110
Period size: 143 Copynumber: 4.5 Consensus size: 143
76265851 TATTTGAATA
76265861 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
76265926 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
76265991 AGCCGATGTGATG
131 GGCCGATGTGATG
76266004 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76266069 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
76266134 GGCCAATGTGATG
131 GGCCGATGTGATG
76266147 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
76266210 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
76266275 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
*
76266290 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
76266353 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
76266418 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
* * * * * * *
76266433 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
76266498 TATG
66 TATG
76266502 ATAAGTCCCG
Statistics
Matches: 480, Mismatches: 14, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
141 40 0.08
143 393 0.82
145 47 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCGATGTGATG
Found at i:76267989 original size:40 final size:40
Alignment explanation
Indices: 76267934--76268062 Score: 222
Period size: 40 Copynumber: 3.2 Consensus size: 40
76267924 GAGAATTGAG
76267934 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76267974 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76268014 AGTGATATATCCAGGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
76268054 AGTGATATA
1 AGTGATATA
76268063 ATTTATCACA
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:76276636 original size:16 final size:16
Alignment explanation
Indices: 76276611--76276641 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76276601 ATCTATAAGA
*
76276611 CACATTTTTCATTATC
1 CACATATTTCATTATC
76276627 CACATATTTCATTAT
1 CACATATTTCATTAT
76276642 AATCATACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.48
Consensus pattern (16 bp):
CACATATTTCATTATC
Found at i:76286152 original size:43 final size:43
Alignment explanation
Indices: 76286064--76286256 Score: 192
Period size: 43 Copynumber: 4.5 Consensus size: 43
76286054 TCTAAAATAT
* * * *
76286064 GATTTCATGTAAGACCACGTCTAGGACGTTGGCATCAATTTGA
1 GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
* * *
76286107 GATATT-GTGTAAGACCATGTCTAGTACATTGACATCGATTAGA
1 GAT-TTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
* * * *
76286150 GATTTCATGTAAGACCACGTTTAGGACATTGGCATCAATTTGA
1 GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
* * * * * * *
76286193 GATATCGTGTAAGACCGTGTTTGGGACACT-GCATCGATTACA
1 GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
*
76286235 GATTTCGTGTAAGACCCTGTCT
1 GATTTCGTGTAAGACCATGTCT
76286257 GGTATAGTGG
Statistics
Matches: 122, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
42 30 0.25
43 90 0.74
44 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
Found at i:76286479 original size:56 final size:56
Alignment explanation
Indices: 76286356--76286482 Score: 227
Period size: 56 Copynumber: 2.3 Consensus size: 56
76286346 AATACGTTGA
* *
76286356 CATCGATATGTAATTTCAATATGTGTTTACGAGTAAGACCCTATCTGGGACAGTGG
1 CATCGATATGTGATTTCAATATGTGTTTACGAGTAAGACCCTATCTGGGACAGAGG
*
76286412 CATCGATATGTGATTTCAATATGTGTTTATGAGTAAGACCCTATCTGGGACAGAGG
1 CATCGATATGTGATTTCAATATGTGTTTACGAGTAAGACCCTATCTGGGACAGAGG
76286468 CATCGATATGTGATT
1 CATCGATATGTGATT
76286483 ACATGTAAGA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (56 bp):
CATCGATATGTGATTTCAATATGTGTTTACGAGTAAGACCCTATCTGGGACAGAGG
Found at i:76293799 original size:43 final size:43
Alignment explanation
Indices: 76293748--76293984 Score: 172
Period size: 43 Copynumber: 5.5 Consensus size: 43
76293738 AGATATGATT
** *
76293748 TCGTGTAAGACCACGTCTGGGACATTGATATCGATTTGAGATA
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
* ** * ** * * *
76293791 TAGTGTAAGACCGTGCCTAAGACACTGGCATTGATTAGAGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
* * ** *
76293834 TCGTGTAAGACGACGTTTGGGATGTTGGCATCGATTTGAGATA
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
* ** * *
76293877 TCGTCTAAGACCGTGTCTGGGACATTGGCATCGATTAGTGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
** * ** *
76293920 TCGTGTAAGACCTTGTCTAGGACAAAGGCATCGA-TATGTGAT-
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTA-GAGATA
* *
76293962 TACATGTAAGACCACGTTTGGGA
1 T-CGTGTAAGACCACGTCTGGGA
76293985 TGTTAGCATT
Statistics
Matches: 146, Mismatches: 46, Indels: 4
0.74 0.23 0.02
Matches are distributed among these distances:
42 3 0.02
43 143 0.98
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
Found at i:76293950 original size:86 final size:86
Alignment explanation
Indices: 76293743--76293954 Score: 253
Period size: 86 Copynumber: 2.5 Consensus size: 86
76293733 TTCCGAGATA
** *
76293743 TGATTTCGTGTAAGACCACGTCTGGGACATTGATATCGATTTGAGATATAGTGTAAGACCGTGCC
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGAGATATAGTCTAAGACCGTGCC
*
76293808 TAAGACACTGGCATTGATTAG
66 TAAGACACTGGCATCGATTAG
* * * ** * *
76293829 AGATTTCGTGTAAGACGACGTTTGGGATGTTGGCATCGATTTGAGATATCGTCTAAGACCGTGTC
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGAGATATAGTCTAAGACCGTGCC
** *
76293894 TGGGACATTGGCATCGATTAG
66 TAAGACACTGGCATCGATTAG
** * **
76293915 TGATTTCGTGTAAGACCTTGTCTAGGACAAAGGCATCGAT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
76293955 ATGTGATTAC
Statistics
Matches: 102, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
86 102 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (86 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGAGATATAGTCTAAGACCGTGCC
TAAGACACTGGCATCGATTAG
Found at i:76293983 original size:129 final size:129
Alignment explanation
Indices: 76293748--76293993 Score: 296
Period size: 129 Copynumber: 1.9 Consensus size: 129
76293738 AGATATGATT
* * *
76293748 TCGTGTAAGACCACGTCTGGGACATTGATATCGATTTGAGATATAGTGTAAGACCGTGCCTAAGA
1 TCGTCTAAGACCACGTCTGGGACATTGACATCGATTAGAGATATAGTGTAAGACCGTGCCTAAGA
** * * * * *
76293813 CACTGGCATTGATTAGAGATTTCGTGTAAGACGACGTTTGGGATGTTGGCATCGATTTGAGATA
66 CAAAGGCATCGATTAGAGATTACATGTAAGACCACGTTTGGGATGTTAGCATCGATTTGAGATA
** * * * * * * *
76293877 TCGTCTAAGACCGTGTCTGGGACATTGGCATCGATTAGTGATTTCGTGTAAGACCTTGTCTAGGA
1 TCGTCTAAGACCACGTCTGGGACATTGACATCGATTAGAGATATAGTGTAAGACCGTGCCTAAGA
*
76293942 CAAAGGCATCGA-TATGTGATTACATGTAAGACCACGTTTGGGATGTTAGCAT
66 CAAAGGCATCGATTA-GAGATTACATGTAAGACCACGTTTGGGATGTTAGCAT
76293994 TGTACAATAT
Statistics
Matches: 96, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
128 2 0.02
129 94 0.98
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (129 bp):
TCGTCTAAGACCACGTCTGGGACATTGACATCGATTAGAGATATAGTGTAAGACCGTGCCTAAGA
CAAAGGCATCGATTAGAGATTACATGTAAGACCACGTTTGGGATGTTAGCATCGATTTGAGATA
Found at i:76294117 original size:43 final size:43
Alignment explanation
Indices: 76294053--76294139 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
76294043 ATATGTTAAT
* *
76294053 TCAATATGTGTTTACGAGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCAATAAGTGATTACGAGTAAGACCAC-GTCTGGGAC-GTTGGCA
76294096 TCAATAAGTGATTAC-ATGTAAGACCACGTCTGGGACGTTGGCA
1 TCAATAAGTGATTACGA-GTAAGACCACGTCTGGGACGTTGGCA
76294139 T
1 T
76294140 TGTACAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 36 0.92
44 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
TCAATAAGTGATTACGAGTAAGACCACGTCTGGGACGTTGGCA
Found at i:76304416 original size:29 final size:29
Alignment explanation
Indices: 76304383--76304493 Score: 150
Period size: 29 Copynumber: 3.8 Consensus size: 29
76304373 TGCAATAAGA
*
76304383 TCGCACACTTAATGCTCGATAGTTTTACT
1 TCGCACACTTAATGCTCGATAATTTTACT
* *
76304412 TCGCACACTTAGTGCTCAATAATTTTACT
1 TCGCACACTTAATGCTCGATAATTTTACT
* * * *
76304441 TCGCACACTTAGTGCTTGTTAATTTTTCT
1 TCGCACACTTAATGCTCGATAATTTTACT
*
76304470 TTGCACACTTAATGCTCGATAATT
1 TCGCACACTTAATGCTCGATAATT
76304494 CACATATATA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.41
Consensus pattern (29 bp):
TCGCACACTTAATGCTCGATAATTTTACT
Found at i:76304774 original size:30 final size:30
Alignment explanation
Indices: 76304740--76304809 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
76304730 TTAAAAATTC
76304740 AAATTGAACTCATTCAAAGAAAATTTTATT
1 AAATTGAACTCATTCAAAGAAAATTTTATT
76304770 AAATTGAACTCATTCAAAGAAAATTTTATT
1 AAATTGAACTCATTCAAAGAAAATTTTATT
76304800 AAATT-AACTC
1 AAATTGAACTC
76304810 CAAAACTCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 5 0.12
30 35 0.88
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (30 bp):
AAATTGAACTCATTCAAAGAAAATTTTATT
Found at i:76304817 original size:37 final size:41
Alignment explanation
Indices: 76304776--76304865 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 41
76304766 TATTAAATTG
76304776 AACTCAT-T-CAAA-GA-AAATTTTATTAAATTAACTCCAA
1 AACTCATATACAAATGACAAATTTTATTAAATTAACTCCAA
*
76304813 AACTCATAGTCAAGCAAATTACAAATTTTATTAAATTAACTCCAA
1 AACTCATA-T--A-CAAATGACAAATTTTATTAAATTAACTCCAA
76304858 AACTCATA
1 AACTCATA
76304866 ATCAAGCAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
37 7 0.16
39 1 0.02
43 4 0.09
44 1 0.02
45 31 0.70
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.31
Consensus pattern (41 bp):
AACTCATATACAAATGACAAATTTTATTAAATTAACTCCAA
Found at i:76304854 original size:45 final size:45
Alignment explanation
Indices: 76304790--76304884 Score: 172
Period size: 45 Copynumber: 2.1 Consensus size: 45
76304780 CATTCAAAGA
*
76304790 AAATTTTATTAAATTAACTCCAAAACTCATAGTCAAGCAAATTAC
1 AAATTTTATTAAATTAACTCCAAAACTCATAATCAAGCAAATTAC
76304835 AAATTTTATTAAATTAACTCCAAAACTCATAATCAAGCAAATTAC
1 AAATTTTATTAAATTAACTCCAAAACTCATAATCAAGCAAATTAC
*
76304880 CAATT
1 AAATT
76304885 ATCCCTTCAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.47, C:0.18, G:0.03, T:0.32
Consensus pattern (45 bp):
AAATTTTATTAAATTAACTCCAAAACTCATAATCAAGCAAATTAC
Found at i:76311418 original size:27 final size:27
Alignment explanation
Indices: 76311378--76311441 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
76311368 GGAAAAACAA
* *
76311378 TCATTTTACCCTACAGGGGTATGTCGG
1 TCATTTTACACTACAAGGGTATGTCGG
* *
76311405 TCATTTTACACTACAAGGGTATTTTGG
1 TCATTTTACACTACAAGGGTATGTCGG
*
76311432 TAATTTTACA
1 TCATTTTACA
76311442 AATTGAGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (27 bp):
TCATTTTACACTACAAGGGTATGTCGG
Found at i:76311450 original size:27 final size:27
Alignment explanation
Indices: 76311394--76311678 Score: 344
Period size: 27 Copynumber: 10.6 Consensus size: 27
76311384 TACCCTACAG
* * * *
76311394 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
76311421 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
76311448 GGGTATTTCGGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* **
76311475 AGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
76311502 GGGTATTTTAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
76311528 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
76311555 GGGTATTTCGTTAATTTTAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
76311581 GGGTATTTTGGTAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
*
76311608 GGGTATTTGGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
76311635 AGGTGTTTCGGTAATTTCACAAATCTG-
1 GGGTATTTCGGTAATTTTACAAATC-GA
76311662 GGGTATTTCGGTAATTT
1 GGGTATTTCGGTAATTT
76311679 ACCTTTATTA
Statistics
Matches: 222, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 47 0.21
27 172 0.77
28 3 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:76311680 original size:53 final size:54
Alignment explanation
Indices: 76311422--76311678 Score: 340
Period size: 53 Copynumber: 4.8 Consensus size: 54
76311412 ACACTACAAG
* * *
76311422 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATCAAA
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
** ** * *
76311476 GGTATTTCAATAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
* *
76311529 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGTTAATTTTAC-AATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
* * *
76311582 GGTATTTTGGTAATTTTACAAATCGGGGGTATTTGGGTAATTTTACAAATCGAA
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
* *
76311636 GGTGTTTCGGTAATTTCACAAATCTG-GGGTATTTCGGTAATTT
1 GGTATTTCGGTAATTTTACAAATC-GAGGGTATTTCGGTAATTT
76311679 ACCTTTATTA
Statistics
Matches: 177, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 94 0.53
54 82 0.46
55 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
Found at i:76311680 original size:80 final size:81
Alignment explanation
Indices: 76311420--76311678 Score: 371
Period size: 80 Copynumber: 3.2 Consensus size: 81
76311410 TTACACTACA
* * *
76311420 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATCAAAGGTATTTCA
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCG
76311485 ATAATTTTACAAATCG
66 ATAATTTTACAAATCG
* * *
76311501 AGGGTATTTTAGTAATTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCG
*
76311565 TTAATTTTAC-AATCG
66 ATAATTTTACAAATCG
* * *
76311580 AGGGTATTTTGGTAATTTTACAAATCGGGGGTATTTGGGTAATTTTACAAATCGAAGGTGTTTCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCG
* *
76311645 GTAATTTCACAAATCTG
66 ATAATTTTACAAATC-G
*
76311662 -GGGTATTTCGGTAATTT
1 AGGGTATTTTGGTAATTT
76311679 ACCTTTATTA
Statistics
Matches: 159, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
79 24 0.15
80 95 0.60
81 39 0.25
82 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCG
ATAATTTTACAAATCG
Found at i:76312031 original size:28 final size:28
Alignment explanation
Indices: 76311995--76312086 Score: 148
Period size: 28 Copynumber: 3.3 Consensus size: 28
76311985 TGGCCACTTT
*
76311995 AGGCCCAATCTCGTTCACATGGCCCAAC
1 AGGCCCAATCTCGTTCACATGGCCCATC
76312023 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
* * *
76312051 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
76312079 AGGCCCAA
1 AGGCCCAA
76312087 CTAGTTCCCA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.26, C:0.38, G:0.17, T:0.18
Consensus pattern (28 bp):
AGGCCCAATCTCGTTCACATGGCCCATC
Found at i:76313734 original size:47 final size:47
Alignment explanation
Indices: 76313671--76313775 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
76313661 CCCTTCGGGA
* * *
76313671 CTTATCACATTTATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
76313718 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
76313765 CTTATCACATA
1 CTTATCACATA
76313776 ATTAATACTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:76345684 original size:26 final size:26
Alignment explanation
Indices: 76345654--76345706 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
76345644 TTTATAGTTT
76345654 TACCCCTAGGAGTTAAATT-ACCGAAA
1 TACCCCTAGG-GTTAAATTGACCGAAA
*
76345680 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGTTAAATTGACCGAAA
76345706 T
1 T
76345707 GCATGTTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGTTAAATTGACCGAAA
Found at i:76350473 original size:3 final size:3
Alignment explanation
Indices: 76350467--76350495 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
76350457 TACTACTATT
76350467 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
76350496 TATTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:76350500 original size:3 final size:3
Alignment explanation
Indices: 76350494--76350530 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
76350484 AATAATAATA
76350494 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
76350531 AGCTCCTCAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:76351343 original size:29 final size:31
Alignment explanation
Indices: 76351296--76351374 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 31
76351286 GTTAGATTAG
* * *
76351296 ATCAAAATTTCATGCATAAAATTGCACA-AAT
1 ATCAAAA-TTCATGTATAAAACTACACATAAT
*
76351327 -TCAAAATTCATGTATAAAACTACACATTAT
1 ATCAAAATTCATGTATAAAACTACACATAAT
*
76351357 ACCAAAATTCATGTATAA
1 ATCAAAATTCATGTATAA
76351375 TTTTGAGATT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 17 0.41
30 8 0.20
31 16 0.39
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.30
Consensus pattern (31 bp):
ATCAAAATTCATGTATAAAACTACACATAAT
Found at i:76357842 original size:27 final size:27
Alignment explanation
Indices: 76357775--76357852 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 27
76357765 GAAAAAAACC
* * *
76357775 TTTGTGGCGTACTCTGAAAGAATAGTC
1 TTTGTGGCGAACTCTAAAAGAATAGTA
* * *
76357802 TATGTAGC-ATACTCTAAAATAATAGTA
1 TTTGTGGCGA-ACTCTAAAAGAATAGTA
**
76357829 TTTGTGGCGAACTCGGAAAGAATA
1 TTTGTGGCGAACTCTAAAAGAATA
76357853 ACCTTTGTGG
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (27 bp):
TTTGTGGCGAACTCTAAAAGAATAGTA
Found at i:76358367 original size:22 final size:22
Alignment explanation
Indices: 76358342--76358385 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
76358332 TAGTCATATA
76358342 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
76358364 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
76358386 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:76358423 original size:13 final size:14
Alignment explanation
Indices: 76358405--76358446 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
76358395 TTTCAATTCT
76358405 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
76358418 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
76358433 ATTTTAAATAATAT
1 ATTTT-AATAATAT
76358447 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:76358431 original size:16 final size:16
Alignment explanation
Indices: 76358409--76358445 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
76358399 AATTCTATTT
76358409 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
76358426 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
76358441 TAATA
1 TAATA
76358446 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:76358498 original size:15 final size:15
Alignment explanation
Indices: 76358478--76358529 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
76358468 ATTCAATATT
76358478 AATATTTTAATAATA
1 AATATTTTAATAATA
*
76358493 AATATTATTACAATTATA
1 AATATT-TT--AATAATA
*
76358511 AATATATTAATAATA
1 AATATTTTAATAATA
76358526 AATA
1 AATA
76358530 ATTTGTAGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 16 0.52
16 2 0.06
17 2 0.06
18 11 0.35
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:76359011 original size:14 final size:14
Alignment explanation
Indices: 76358992--76359030 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
76358982 CTAGAAAAGT
76358992 AAATCATTTTCCAG
1 AAATCATTTTCCAG
**
76359006 AAATCATTTTCTGG
1 AAATCATTTTCCAG
*
76359020 AAGTCATTTTC
1 AAATCATTTTC
76359031 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:76359505 original size:20 final size:21
Alignment explanation
Indices: 76359480--76359518 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76359470 TCCTTAAAAC
*
76359480 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
76359500 AGGGCAACACGCCCATGTG
1 AGGGCAACACGCCCATGTG
76359519 ACCAACTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:76360747 original size:46 final size:46
Alignment explanation
Indices: 76360604--76360820 Score: 169
Period size: 46 Copynumber: 4.6 Consensus size: 46
76360594 TTGCTAATGC
* * * * *
76360604 CATGTACC-AGACATGGTCTTACACTAGCTCTTGCATATCTGTGCCAATG
1 CATGT-CCTAGACATGGTCTTACACT-G-GCTTACATCTC-GAGCCGATG
*
76360653 CCATGTCCTAGACATGGTCTTACACTGAC--ACATCTCGTAGCCGATG
1 -CATGTCCTAGACATGGTCTTACACTGGCTTACATCTCG-AGCCGATG
*
76360699 CATGTCCTAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATG
1 CATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGA-GCCGATG
* * * **
76360745 CATGTCCCAGACAT-GCCTTACACTAGCATT-CATCTTAATGCCGATG
1 CATGTCCTAGACATGGTCTTACACTGGC-TTACATCTCGA-GCCGATG
*
76360791 CCATGT-CTCAAACATGGTCTTACACTGGCT
1 -CATGTCCT-AGACATGGTCTTACACTGGCT
76360821 CATACCAATG
Statistics
Matches: 140, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
44 12 0.09
45 16 0.11
46 62 0.44
47 13 0.09
48 12 0.09
49 3 0.02
50 22 0.16
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGCCGATG
Found at i:76363080 original size:27 final size:28
Alignment explanation
Indices: 76362971--76363093 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
76362961 GAGATTGGCG
* * * *
76362971 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
76363000 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
76363028 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
76363056 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
76363083 CTGAGTGTGCG
1 CTAAGTGTGCG
76363094 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.26
28 49 0.56
29 15 0.17
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:76363104 original size:27 final size:27
Alignment explanation
Indices: 76362996--76363106 Score: 134
Period size: 28 Copynumber: 4.0 Consensus size: 27
76362986 TAAATTGTAC
*
76362996 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
* *
76363024 AGCACTAAGTGTGCGAGTTTGATTACAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
76363052 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
76363079 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGATTATAT
76363106 A
1 A
76363107 CTTTTGAATC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 29 0.38
28 47 0.62
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:76383128 original size:40 final size:40
Alignment explanation
Indices: 76383073--76383264 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
76383063 CGGATGATAA
76383073 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
76383113 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * * *
76383153 CCAGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * *
76383193 CCGGGCTAAGTCCGGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
76383233 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
76383265 AGCTATATCC
Statistics
Matches: 136, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:76385744 original size:17 final size:16
Alignment explanation
Indices: 76385719--76385752 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
76385709 ATATGCTTAA
*
76385719 GTGTTATGTGATTATAT
1 GTGTAATGTGA-TATAT
76385736 GTGTAATGTGATATAT
1 GTGTAATGTGATATAT
76385752 G
1 G
76385753 CTTAAAAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (16 bp):
GTGTAATGTGATATAT
Found at i:76385757 original size:39 final size:39
Alignment explanation
Indices: 76385619--76385755 Score: 186
Period size: 39 Copynumber: 3.5 Consensus size: 39
76385609 ATGTTTCTGA
76385619 GTATTGTGATATATATGCTTGAATATTATGTGATTATATGT
1 GTATTGTG--ATATATGCTTGAATATTATGTGATTATATGT
* * * *
76385660 GTATTGTGATATATGTTTGAACATTATGTAATTATATGA
1 GTATTGTGATATATGCTTGAATATTATGTGATTATATGT
*
76385699 GTATTGTGATATATGCTT-AAGTGTTATGTGATTATATGT
1 GTATTGTGATATATGCTTGAA-TATTATGTGATTATATGT
*
76385738 GTAATGTGATATATGCTT
1 GTATTGTGATATATGCTT
76385756 AAAAGTGAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.02
39 75 0.88
41 8 0.09
ACGTcount: A:0.29, C:0.03, G:0.20, T:0.47
Consensus pattern (39 bp):
GTATTGTGATATATGCTTGAATATTATGTGATTATATGT
Found at i:76395714 original size:93 final size:93
Alignment explanation
Indices: 76395602--76395774 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
76395592 CGCCCATAAG
* * * *
76395602 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
76395667 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
76395695 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
* *
76395760 ATGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
76395775 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:76395770 original size:46 final size:46
Alignment explanation
Indices: 76395603--76395770 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 46
76395593 GCCCATAAGC
* * *
76395603 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
* * * * * ** *
76395649 GAACTTGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATCCAT-AAAT
*
76395696 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
* *
76395742 GAACTCGGACTCAACTCAATGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
76395771 TGCCCAAATA
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 64 0.65
47 34 0.35
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
Found at i:76397738 original size:30 final size:30
Alignment explanation
Indices: 76397693--76397781 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
76397683 CAAAGATAAC
*
76397693 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
76397722 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
76397752 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
76397782 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:76397741 original size:15 final size:14
Alignment explanation
Indices: 76397693--76397775 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
76397683 CAAAGATAAC
*
76397693 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
76397707 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
76397722 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
76397737 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
76397752 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
76397767 AAGAAACCC
1 AAGAAACCC
76397776 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:76397781 original size:15 final size:15
Alignment explanation
Indices: 76397704--76397781 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
76397694 AGAAAACCGA
76397704 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
76397719 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
76397733 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
76397748 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76397764 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76397779 ATA
1 ATA
76397782 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76400779 original size:47 final size:47
Alignment explanation
Indices: 76400696--76400829 Score: 146
Period size: 46 Copynumber: 2.9 Consensus size: 47
76400686 TGTAACCCGC
* * * *
76400696 CCATAAGCGAACTCGGACTCAAATCAATGAGCTCGGATGCCTAG-TT
1 CCATAAACGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGCAT
* ** * * *
76400742 GCATCTCACGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCAT
1 CCAT-AAACGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGCAT
*
76400789 CCATAAATGAACTCGGACTCAACTCAATGAGTTCGGATGCC
1 CCATAAACGAACTCGGACTCAACTCAATGAGTTCGGATGCC
76400830 CAAATATCCC
Statistics
Matches: 69, Mismatches: 16, Indels: 5
0.77 0.18 0.06
Matches are distributed among these distances:
46 36 0.52
47 33 0.48
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
CCATAAACGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGCAT
Found at i:76403388 original size:46 final size:46
Alignment explanation
Indices: 76403338--76403508 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
76403328 TGGTTGAGCA
76403338 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** *
76403384 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
76403429 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76403477 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
76403509 GAGGGGCGGG
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 57 0.55
47 28 0.27
48 1 0.01
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76403494 original size:93 final size:93
Alignment explanation
Indices: 76403335--76403505 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
76403325 GGATGGTTGA
* *
76403335 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76403400 TGAGTCCGAGTTCGTAAAATGTAACTAG
66 TGAGTCCGAGTTCGTAAAATGTAACTAG
*
76403428 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
76403493 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
76403506 ACTGAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTAAAATGTAACTAG
Found at i:76407768 original size:40 final size:40
Alignment explanation
Indices: 76407667--76407857 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
76407657 TGGATGATAA
* * * * **
76407667 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
76407707 CGGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
76407746 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
76407786 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
76407826 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
76407858 AGCTATATCC
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 32 0.24
40 102 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:76411168 original size:10 final size:10
Alignment explanation
Indices: 76411153--76411188 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
76411143 TAACATATTG
76411153 AATTTTAATT
1 AATTTTAATT
76411163 AATTTTAATT
1 AATTTTAATT
*
76411173 AATTTTGATT
1 AATTTTAATT
*
76411183 TATTTT
1 AATTTT
76411189 CGACAGATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (10 bp):
AATTTTAATT
Found at i:76415307 original size:19 final size:16
Alignment explanation
Indices: 76415249--76415299 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
76415239 TTGCTTTATG
76415249 TAATTAATGTAAAATAA
1 TAATTAAT-TAAAATAA
*
76415266 T-ATTATTTAAAATAA
1 TAATTAATTAAAATAA
76415281 TAATTAATTAAAATAA
1 TAATTAATTAAAATAA
76415297 TAA
1 TAA
76415300 ACTCTAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
15 9 0.29
16 21 0.68
17 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (16 bp):
TAATTAATTAAAATAA
Found at i:76415615 original size:17 final size:17
Alignment explanation
Indices: 76415580--76415625 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
76415570 ATTTTTATAT
*
76415580 AATATAGATTATGAAAA
1 AATATAGATTATAAAAA
*
76415597 AATATAGATT-TAAATA
1 AATATAGATTATAAAAA
76415613 AA-ATA-ATTATAAA
1 AATATAGATTATAAA
76415626 TTATAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 3 0.12
15 7 0.27
16 6 0.23
17 10 0.38
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.33
Consensus pattern (17 bp):
AATATAGATTATAAAAA
Found at i:76416268 original size:30 final size:30
Alignment explanation
Indices: 76416229--76416287 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
76416219 AAATTTTAAA
* *
76416229 TTAACAATAATAA-AATTATATTTTAATTTT
1 TTAAAAATAATAATAATT-TAATTTAATTTT
76416259 TTAAAAATAATAATAATTTAATTTAATTT
1 TTAAAAATAATAATAATTTAATTTAATTT
76416288 AATTTAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (30 bp):
TTAAAAATAATAATAATTTAATTTAATTTT
Found at i:76416282 original size:5 final size:5
Alignment explanation
Indices: 76416272--76416306 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
76416262 AAAATAATAA
76416272 TAATT TAATT TAATT TAATT TAATT TAATT TAATT
1 TAATT TAATT TAATT TAATT TAATT TAATT TAATT
76416307 CCCTAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TAATT
Found at i:76416323 original size:8 final size:8
Alignment explanation
Indices: 76416310--76416350 Score: 59
Period size: 8 Copynumber: 5.2 Consensus size: 8
76416300 TTTAATTCCC
76416310 TAAAATTA
1 TAAAATTA
76416318 TAAAA-TA
1 TAAAATTA
76416325 T-AAATTA
1 TAAAATTA
76416332 TTAAAATTA
1 -TAAAATTA
76416341 TAAAATTA
1 TAAAATTA
76416349 TA
1 TA
76416351 TTTTTACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
6 3 0.10
7 5 0.17
8 16 0.53
9 6 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
TAAAATTA
Found at i:76416331 original size:14 final size:16
Alignment explanation
Indices: 76416310--76416350 Score: 59
Period size: 14 Copynumber: 2.6 Consensus size: 16
76416300 TTTAATTCCC
76416310 TAAAATTATAAAA-TA
1 TAAAATTATAAAATTA
76416325 T-AAATTATTAAAATTA
1 TAAAATTA-TAAAATTA
76416341 TAAAATTATA
1 TAAAATTATA
76416351 TTTTTACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.26
15 6 0.26
16 5 0.22
17 6 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAAATTATAAAATTA
Found at i:76416403 original size:21 final size:21
Alignment explanation
Indices: 76416379--76416420 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
76416369 ATATATAATT
* *
76416379 TAATTTCAATTCTTTCAAAAA
1 TAATTTCAATCCTTTAAAAAA
76416400 TAATTTCAATCCTTTAAAAAA
1 TAATTTCAATCCTTTAAAAAA
76416421 AAACTTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATTTCAATCCTTTAAAAAA
Found at i:76419923 original size:17 final size:17
Alignment explanation
Indices: 76419891--76419924 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76419881 AATTTAAAAC
* *
76419891 TATTTTTTATATTTTTA
1 TATTTTTTAAAATTTTA
76419908 TATTTTTTAAAATTTTA
1 TATTTTTTAAAATTTTA
76419925 AAAAATCAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTTTTAAAATTTTA
Found at i:76421555 original size:12 final size:12
Alignment explanation
Indices: 76421531--76421564 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
76421521 AAATTACAAA
76421531 TAAATTCAAATAT
1 TAAATT-AAATAT
76421544 TAAATTAAATAT
1 TAAATTAAATAT
*
76421556 AAAATTAAA
1 TAAATTAAA
76421565 CACAATTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
TAAATTAAATAT
Found at i:76423361 original size:15 final size:14
Alignment explanation
Indices: 76423341--76423386 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 14
76423331 ACTTTTCTCT
76423341 TTCTTCTTGTCTTTC
1 TTCTTCTT-TCTTTC
76423356 TTCTTC-TTCTTT-
1 TTCTTCTTTCTTTC
76423368 TTCTTCTTATCTTTAC
1 TTCTTCTT-TCTTT-C
76423384 TTC
1 TTC
76423387 GCATCTGCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 6 0.22
13 6 0.22
14 6 0.22
15 6 0.22
16 3 0.11
ACGTcount: A:0.04, C:0.26, G:0.02, T:0.67
Consensus pattern (14 bp):
TTCTTCTTTCTTTC
Found at i:76425153 original size:17 final size:16
Alignment explanation
Indices: 76425127--76425162 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
76425117 CGTGTCAAGT
*
76425127 TAACTGGCCACGTCAGC
1 TAACTAGCCACGTCA-C
76425144 TAACTAGCCACGTCAC
1 TAACTAGCCACGTCAC
76425160 TAA
1 TAA
76425163 TCTTGTTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (16 bp):
TAACTAGCCACGTCAC
Found at i:76425929 original size:18 final size:17
Alignment explanation
Indices: 76425896--76425950 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
76425886 TAAATTTGTG
76425896 AAAAATATAAAAAATTAAT
1 AAAAATAT--AAAATTAAT
**
76425915 GGAAATCATAAAATTAAT
1 AAAAAT-ATAAAATTAAT
*
76425933 AAAAATATAAAATAAAT
1 AAAAATATAAAATTAAT
76425950 A
1 A
76425951 TTTTTAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
17 11 0.37
18 13 0.43
19 4 0.13
20 2 0.07
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (17 bp):
AAAAATATAAAATTAAT
Found at i:76426133 original size:9 final size:9
Alignment explanation
Indices: 76426023--76426134 Score: 58
Period size: 9 Copynumber: 12.9 Consensus size: 9
76426013 AAAAAATTAC
76426023 ATAAAAATT
1 ATAAAAATT
*
76426032 ATAGAAATT
1 ATAAAAATT
76426041 AT--AAA-T
1 ATAAAAATT
*
76426047 ATACAAAA-C
1 ATA-AAAATT
*
76426056 AT--AAATA
1 ATAAAAATT
*
76426063 ATAAATATT
1 ATAAAAATT
*
76426072 GTAAATAATT
1 ATAAA-AATT
76426082 AT-AAAATT
1 ATAAAAATT
*
76426090 ATAAACATT
1 ATAAAAATT
* *
76426099 TTGGAAAATT
1 AT-AAAAATT
*
76426109 ATGAAAATT
1 ATAAAAATT
*
76426118 ACAAAAATT
1 ATAAAAATT
76426127 ATAAAAAT
1 ATAAAAAT
76426135 ATTCTTTTTC
Statistics
Matches: 78, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
6 6 0.08
7 5 0.06
8 6 0.08
9 51 0.65
10 10 0.13
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:76433907 original size:32 final size:32
Alignment explanation
Indices: 76433865--76433926 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
76433855 TTTGGCCTTG
* *
76433865 TTTTGTGGATGTTTTGGTTGCCTACGTATGTC
1 TTTTATGGATGTTTTGGTTACCTACGTATGTC
*
76433897 TTTTATGGATGTTTTGGTTACCTATGTATG
1 TTTTATGGATGTTTTGGTTACCTACGTATG
76433927 CCATGATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.13, C:0.10, G:0.26, T:0.52
Consensus pattern (32 bp):
TTTTATGGATGTTTTGGTTACCTACGTATGTC
Found at i:76435527 original size:61 final size:61
Alignment explanation
Indices: 76435432--76435554 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
76435422 AGATGGGTTG
*
76435432 AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTGGTGCTAGCCA
1 AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTAGTGCTAGCCA
76435493 AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTAGTGCTAGCCA
1 AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTAGTGCTAGCCA
76435554 A
1 A
76435555 CAAAGCTTGC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (61 bp):
AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTAGTGCTAGCCA
Found at i:76448359 original size:18 final size:17
Alignment explanation
Indices: 76448333--76448366 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
76448323 ATGAAATAAA
*
76448333 TAAATAAATAAATAAAAT
1 TAAAGAAAT-AATAAAAT
76448351 TAAAGAAATAATAAAA
1 TAAAGAAATAATAAAA
76448367 GTTTTTACAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAAGAAATAATAAAAT
Found at i:76449836 original size:40 final size:40
Alignment explanation
Indices: 76449790--76449976 Score: 213
Period size: 39 Copynumber: 4.7 Consensus size: 40
76449780 ACTACTTGCT
76449790 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
*
76449830 CAAATGCCTTCAGGACTTAGCCCGGTTCA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * * *
76449869 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * * *
76449909 CAATTGCCTTCGGG-TTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
76449948 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76449977 CATCCGAATA
Statistics
Matches: 122, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 63 0.52
40 54 0.44
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76449893 original size:79 final size:79
Alignment explanation
Indices: 76449790--76449976 Score: 227
Period size: 79 Copynumber: 2.4 Consensus size: 79
76449780 ACTACTTGCT
* *
76449790 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCC-
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAATAACTCACACAAATGCCTTC-GGACTTAGCCCA
* *
76449853 G-GTTCAATAACTCGCA
64 GAATT-AATAACTAGCA
* * * **
76449869 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAATTGCCTTCGGGTTTAGCCCAGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCACACAAATGCCTTCGGACTTAGCCCAGA
* *
76449934 ATTAGTCACTAGCA
66 ATTAATAACTAGCA
76449948 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76449977 CATCCGAATA
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 9 0.10
79 80 0.87
80 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCACACAAATGCCTTCGGACTTAGCCCAGA
ATTAATAACTAGCA
Found at i:76458494 original size:30 final size:30
Alignment explanation
Indices: 76458458--76458516 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
76458448 TACAATTTCA
* *
76458458 TTTTATTTTTATTTTAATTTGGCCCTAATC
1 TTTTATTTTTATTTCAATTTAGCCCTAATC
* *
76458488 TTTTATTTTTGTTTCAATTTAGTCCTAAT
1 TTTTATTTTTATTTCAATTTAGCCCTAAT
76458517 GGCCATTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.07, T:0.61
Consensus pattern (30 bp):
TTTTATTTTTATTTCAATTTAGCCCTAATC
Found at i:76458806 original size:21 final size:21
Alignment explanation
Indices: 76458782--76458859 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 21
76458772 TTTACCATAT
76458782 TATTTATATTATCATATATTC
1 TATTTATATTATCATATATTC
* *
76458803 TATTTATAAATTTTATTATATATCTTT
1 TATTTAT--A--TTATCATATA--TTC
76458830 TATTATATATTATCATATATTC
1 TATT-TATATTATCATATATTC
76458852 TATTTATA
1 TATTTATA
76458860 AATTTTATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
21 11 0.24
22 6 0.13
23 1 0.02
24 9 0.20
25 9 0.20
26 1 0.02
27 6 0.13
28 3 0.07
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTATATTATCATATATTC
Found at i:76458818 original size:25 final size:25
Alignment explanation
Indices: 76458790--76458874 Score: 111
Period size: 25 Copynumber: 3.4 Consensus size: 25
76458780 ATTATTTATA
76458790 TTATCATATATTCTATTTATAAATT
1 TTATCATATATTCTATTTATAAATT
* * *
76458815 TTATTATATA-TCT-TTTATTATATA
1 TTATCATATATTCTATTTA-TAAATT
76458839 TTATCATATATTCTATTTATAAATT
1 TTATCATATATTCTATTTATAAATT
*
76458864 TTATTATATAT
1 TTATCATATAT
76458875 ATTAACCCTT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
23 4 0.08
24 16 0.32
25 26 0.52
26 4 0.08
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (25 bp):
TTATCATATATTCTATTTATAAATT
Found at i:76458830 original size:14 final size:14
Alignment explanation
Indices: 76458813--76458839 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76458803 TATTTATAAA
76458813 TTTTATTATATATC
1 TTTTATTATATATC
76458827 TTTTATTATATAT
1 TTTTATTATATAT
76458840 TATCATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTATTATATATC
Found at i:76458842 original size:49 final size:48
Alignment explanation
Indices: 76458781--76458874 Score: 179
Period size: 49 Copynumber: 1.9 Consensus size: 48
76458771 ATTTACCATA
76458781 TTATTTATATTATCATATATTCTATTTATAAATTTTATTATATATCTT
1 TTATTTATATTATCATATATTCTATTTATAAATTTTATTATATATCTT
76458829 TTATTATATATTATCATATATTCTATTTATAAATTTTATTATATAT
1 TTATT-TATATTATCATATATTCTATTTATAAATTTTATTATATAT
76458875 ATTAACCCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 5 0.11
49 40 0.89
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (48 bp):
TTATTTATATTATCATATATTCTATTTATAAATTTTATTATATATCTT
Found at i:76459465 original size:71 final size:69
Alignment explanation
Indices: 76459351--76459506 Score: 203
Period size: 71 Copynumber: 2.3 Consensus size: 69
76459341 GTTATTTTAA
* * *
76459351 GTTATATTTGCAT-AAA-ATATTGTTATATATTATGTAATTTATATTGTTAT-ATTCATTGTTTT
1 GTTATATTTGCATGAAATATATTATTATATATTATGTAATCTATATTGTTATGA-TAATTGTTTT
76459413 CTAT-
65 CTATG
*
76459417 GTTATATTTTGCATGAAATATTATTATGTATGTATTATGTAATCTATATTGTTATGATAATTGTT
1 GTTATA-TTTGCATGAAATA-TATTAT-TATATATTATGTAATCTATATTGTTATGATAATTGTT
76459482 TTCTATG
63 TTCTATG
*
76459489 GTTATATCTGCATGAAAT
1 GTTATATTTGCATGAAAT
76459507 GATGATGCAT
Statistics
Matches: 78, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
66 6 0.08
67 7 0.09
68 3 0.04
69 1 0.01
70 5 0.06
71 49 0.63
72 7 0.09
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (69 bp):
GTTATATTTGCATGAAATATATTATTATATATTATGTAATCTATATTGTTATGATAATTGTTTTC
TATG
Found at i:76470989 original size:44 final size:44
Alignment explanation
Indices: 76470939--76471230 Score: 392
Period size: 44 Copynumber: 6.7 Consensus size: 44
76470929 TCACCGATAG
* *
76470939 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAGATAA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
* *
76470983 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
* **
76471027 TAGATTTGGC--CTCTATATTGAAAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
*
76471069 CAGATTTGGTGTCTCTATATTGAT-AGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTATATTG-TCAGAGAGCAGATCGAAGATGA
* * *
76471113 CAGATTTGGCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
* * * * *
76471157 CAGATTTGACATCTCTGTATTGACAGAGAGCAGATTGAAGATGA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
* *
76471201 CAAATTTGGCGTCTCTATATTGTCTGAGAG
1 CAGATTTGGCGTCTCTATATTGTCAGAGAG
76471231 TTAGCGTCTC
Statistics
Matches: 217, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
42 38 0.18
43 1 0.00
44 178 0.82
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
Found at i:76471230 original size:88 final size:88
Alignment explanation
Indices: 76470939--76471230 Score: 435
Period size: 88 Copynumber: 3.3 Consensus size: 88
76470929 TCACCGATAG
*
76470939 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATT
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT
76471004 GACAGAGAGCAGATCGAAGATGA
66 GACAGAGAGCAGATCGAAGATGA
* ** * * *
76471027 TAGATTTGGC--CTCTATATTGAAAGAGAGCAGATCGAAGATGACAGATTTGGTGTCTCTATATT
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT
*
76471090 GATAGAGAGCAGATCGAAGATGA
66 GACAGAGAGCAGATCGAAGATGA
* * * *
76471113 CAGATTTGGCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAACAGATTTGACATCTCTGTATT
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT
*
76471178 GACAGAGAGCAGATTGAAGATGA
66 GACAGAGAGCAGATCGAAGATGA
* *
76471201 CAAATTTGGCGTCTCTATATTGTCTGAGAG
1 CAGATTTGGCGTCTCTATATTGTCAGAGAG
76471231 TTAGCGTCTC
Statistics
Matches: 179, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
86 78 0.44
88 101 0.56
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (88 bp):
CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT
GACAGAGAGCAGATCGAAGATGA
Found at i:76471299 original size:69 final size:69
Alignment explanation
Indices: 76471168--76471299 Score: 176
Period size: 69 Copynumber: 1.9 Consensus size: 69
76471158 AGATTTGACA
* * * * *
76471168 TCTCTGTATTGACAGAGAGCAGATTGAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGTT
1 TCTCTATATTGACAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCTATATTGACAGAGAGTT
76471233 AGCG
66 AGCG
* * *
76471237 TCTCTATATTGTCAGAGAGCATATCGAAGAT-AGCAAATTTGGCATCTCTGTATTGACAGAGAG
1 TCTCTATATTGACAGAGAGCAGATCGAAGATGA-CAAATTTGGCATCTCTATATTGACAGAGAG
76471300 CAAATCGAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
68 1 0.02
69 53 0.98
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (69 bp):
TCTCTATATTGACAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCTATATTGACAGAGAGTT
AGCG
Found at i:76471300 original size:44 final size:43
Alignment explanation
Indices: 76471237--76471455 Score: 235
Period size: 44 Copynumber: 5.0 Consensus size: 43
76471227 AGAGTTAGCG
* * *
76471237 TCTCTATATTGTCAGAGAGCATATCGAAGATAGCAAATTTGGCA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAT-GCAAATTTGGCA
* *
76471281 TCTCTGTATTGACAGAGAGCAAATCGAAGATGACAAATTTGACA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATG-CAAATTTGGCA
* *
76471325 TCTCTGTATT-AGTAGAGAGTAGATCGAAGATGACAAATTTGGCA
1 TCTCTGTATTGA-CAGAGAGCAGATCGAAGATG-CAAATTTGGCA
* ** *
76471369 TCTCTGTATTGATAGAGAGCAGATAAAAGATG-ATAGATTTGACA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATGCA-A-ATTTGGCA
* * *
76471413 TCTCTGTATTGACAGAGAGTAGATTGAAGATAGCAGATTTGGC
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAT-GCAAATTTGGC
76471456 GTCATTGGTA
Statistics
Matches: 150, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 143 0.95
45 2 0.01
46 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (43 bp):
TCTCTGTATTGACAGAGAGCAGATCGAAGATGCAAATTTGGCA
Found at i:76471329 original size:113 final size:113
Alignment explanation
Indices: 76471121--76471334 Score: 329
Period size: 113 Copynumber: 1.9 Consensus size: 113
76471111 GACAGATTTG
* *
76471121 GCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAACAGATTTGACATCTCTGTATTGACAGAGA
1 GCGTCTCCATATTGTCAGAGAGCAGATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGA
* * * *
76471186 GCAGATTGAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGTTA
66 GCAAATCGAAGATGACAAATTTGACATCTCTATATTGTCTGAGAGTTA
* * * *
76471234 GCGTCTCTATATTGTCAGAGAGCATATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAGA
1 GCGTCTCCATATTGTCAGAGAGCAGATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGA
*
76471299 GCAAATCGAAGATGACAAATTTGACATCTCTGTATT
66 GCAAATCGAAGATGACAAATTTGACATCTCTATATT
76471335 AGTAGAGAGT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
113 90 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (113 bp):
GCGTCTCCATATTGTCAGAGAGCAGATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGA
GCAAATCGAAGATGACAAATTTGACATCTCTATATTGTCTGAGAGTTA
Found at i:76471365 original size:157 final size:157
Alignment explanation
Indices: 76471079--76471379 Score: 419
Period size: 157 Copynumber: 1.9 Consensus size: 157
76471069 CAGATTTGGT
* * **
76471079 GTCTCTATATTGATAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCCATATTGTTAGAGAGC
1 GTCTCTATATTGATAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCCATATTGACAGAGAGC
* * *
76471144 AGATCGAAGATAACAGATTTGACATCTCTGTATTGACAGAGAGCAGATTGAAGATGACAAATTTG
66 AAATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGAGCAGATCGAAGATGACAAATTTG
*
76471209 GCGTCTCTATATTGTCTGAGAGTTAGC
131 GCATCTCTATATTGTCTGAGAGTTAGC
* **
76471236 GTCTCTATATTG-TCAGAGAGCATATCGAAGAT-AGCAAATTTGGCATCTCTGTATTGACAGAGA
1 GTCTCTATATTGAT-AGAGAGCAGATCGAAGATGA-CAAATTTGGCATCTCCATATTGACAGAGA
* * *
76471299 GCAAATCGAAGATGACAAATTTGACATCTCTGTATT-AGTAGAGAGTAGATCGAAGATGACAAAT
64 GCAAATCGAAGATAACAAATTTGACATCTCTGTATTGA-CAGAGAGCAGATCGAAGATGACAAAT
*
76471363 TTGGCATCTCTGTATTG
128 TTGGCATCTCTATATTG
76471380 ATAGAGAGCA
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
156 3 0.02
157 123 0.98
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30
Consensus pattern (157 bp):
GTCTCTATATTGATAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCCATATTGACAGAGAGC
AAATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGAGCAGATCGAAGATGACAAATTTG
GCATCTCTATATTGTCTGAGAGTTAGC
Found at i:76471386 original size:88 final size:87
Alignment explanation
Indices: 76471237--76471455 Score: 287
Period size: 88 Copynumber: 2.5 Consensus size: 87
76471227 AGAGTTAGCG
* * *
76471237 TCTCTATATTGTCAGAGAGCATATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAGAGCA
1 TCTCTGTATTGT-AGAGAGTAGATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAGAGCA
**
76471302 AATCGAAGATGACAAATTTGACA
65 AATAAAAGATGACAAATTTGACA
*
76471325 TCTCTGTATTAGTAGAGAGTAGATCGAAGAT-GACAAATTTGGCATCTCTGTATTGATAGAGAGC
1 TCTCTGTATT-GTAGAGAGTAGATCGAAGATAG-CAAATTTGGCATCTCTGTATTGACAGAGAGC
* * *
76471389 AGATAAAAGATGATAGATTTGACA
64 AAATAAAAGATGACAAATTTGACA
* * *
76471413 TCTCTGTATTGACAGAGAGTAGATTGAAGATAGCAGATTTGGC
1 TCTCTGTATTG-TAGAGAGTAGATCGAAGATAGCAAATTTGGC
76471456 GTCATTGGTA
Statistics
Matches: 115, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
87 2 0.02
88 110 0.96
89 3 0.03
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (87 bp):
TCTCTGTATTGTAGAGAGTAGATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAGAGCAA
ATAAAAGATGACAAATTTGACA
Found at i:76471388 original size:201 final size:201
Alignment explanation
Indices: 76471037--76471401 Score: 509
Period size: 201 Copynumber: 1.8 Consensus size: 201
76471027 TAGATTTGGC
* ** * *
76471037 CTCTATATTGAAAGAGAGCAGATCGAAGATGACAGATTTGGTGTCTCTATATTGATAGAGAGCAG
1 CTCTATATTGAAAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCTATATTGACAGAGAGCAA
* * * *
76471102 ATCGAAGATGACAGATTTGGCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAACAGATTTGAC
66 ATCGAAGATGACAAATTTGACATCTCCATATTGTTAGAGAGCAGATCGAAGATAACAAATTTGAC
**
76471167 ATCTCTGTATTGACAGAGAGCAGATTGAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGT
131 ATCTCTGTATTGACAGAGAGCAGATAAAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGT
76471232 TAGCGT
196 TAGCGT
** * *
76471238 CTCTATATTGTCAGAGAGCATATCGAAGAT-AGCAAATTTGGCATCTCTGTATTGACAGAGAGCA
1 CTCTATATTGAAAGAGAGCAGATCGAAGATGA-CAAATTTGGCATCTCTATATTGACAGAGAGCA
** * *
76471302 AATCGAAGATGACAAATTTGACATCTCTGTATTAG-TAGAGAGTAGATCGAAGATGACAAATTTG
65 AATCGAAGATGACAAATTTGACATCTCCATATT-GTTAGAGAGCAGATCGAAGATAACAAATTTG
* *
76471366 GCATCTCTGTATTGATAGAGAGCAGATAAAAGATGA
129 ACATCTCTGTATTGACAGAGAGCAGATAAAAGATGA
76471402 TAGATTTGAC
Statistics
Matches: 141, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
200 1 0.01
201 139 0.99
202 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (201 bp):
CTCTATATTGAAAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCTATATTGACAGAGAGCAA
ATCGAAGATGACAAATTTGACATCTCCATATTGTTAGAGAGCAGATCGAAGATAACAAATTTGAC
ATCTCTGTATTGACAGAGAGCAGATAAAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGT
TAGCGT
Found at i:76471419 original size:245 final size:243
Alignment explanation
Indices: 76470991--76471458 Score: 647
Period size: 245 Copynumber: 1.9 Consensus size: 243
76470981 AACAGATTTG
*
76470991 GCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGATAGATTTGGCCTCTATATTGAAAGAGAGC
1 GCGTCTCTATATTGACAGAGAGCAGATCGAAGATGATAGATTTGGCCTCTATATTGAAAGAGAGC
* * *** *
76471056 AGATCGAAGATGACAGATTTGGTGTCTCTATATTGATAGAGAGCAGATCGAAGATGACAGATTTG
66 AAATCGAAGATGACAAATTTGACATCTCTATATTGATAGAGAGCAGATCGAAGATGACAAATTTG
* * **
76471121 GCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAACAGATTTGACATCTCTGTATTGACAGAGA
131 GCATCTCCATATTGATAGAGAGCAGATAAAAGATAACAGATTTGACATCTCTGTATTGACAGAGA
76471186 GCAGATTGAAGAT-GACAAATTTGGCGTCTCTATATTGTCTGAGAGTTA
196 GCAGATTGAAGATAG-CAAATTTGGCGTCTCTATATTGTCTGAGAGTTA
* * * *
76471234 GCGTCTCTATATTGTCAGAGAGCATATCGAAGATAGCA-A-ATTTGGCATCTCTGTATTGACAGA
1 GCGTCTCTATATTGACAGAGAGCAGATCGAAGAT-G-ATAGATTTGGC--CTCTATATTGAAAGA
* *
76471297 GAGCAAATCGAAGATGACAAATTTGACATCTCTGTATT-AGTAGAGAGTAGATCGAAGATGACAA
62 GAGCAAATCGAAGATGACAAATTTGACATCTCTATATTGA-TAGAGAGCAGATCGAAGATGACAA
** * *
76471361 ATTTGGCATCTCTGTATTGATAGAGAGCAGATAAAAGATGATAGATTTGACATCTCTGTATTGAC
126 ATTTGGCATCTCCATATTGATAGAGAGCAGATAAAAGATAACAGATTTGACATCTCTGTATTGAC
* *
76471426 AGAGAGTAGATTGAAGATAGCAGATTTGGCGTC
191 AGAGAGCAGATTGAAGATAGCAAATTTGGCGTC
76471459 ATTGGTAACC
Statistics
Matches: 196, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
243 38 0.19
244 3 0.02
245 154 0.79
246 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (243 bp):
GCGTCTCTATATTGACAGAGAGCAGATCGAAGATGATAGATTTGGCCTCTATATTGAAAGAGAGC
AAATCGAAGATGACAAATTTGACATCTCTATATTGATAGAGAGCAGATCGAAGATGACAAATTTG
GCATCTCCATATTGATAGAGAGCAGATAAAAGATAACAGATTTGACATCTCTGTATTGACAGAGA
GCAGATTGAAGATAGCAAATTTGGCGTCTCTATATTGTCTGAGAGTTA
Found at i:76472551 original size:44 final size:44
Alignment explanation
Indices: 76472495--76473105 Score: 738
Period size: 44 Copynumber: 13.9 Consensus size: 44
76472485 AGATCTACTG
*
76472495 TCTTTGATCTGCTCTCTATCAATACAGAGACGCCAAATCTG-CTA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTC-A
* * *
76472539 TCTTCAATCTGCTCTCTGTCAATACAGAGACGCCAAATCTATCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* *
76472583 TCTTCGATCTGCTCTCTATCAATATAGAGATGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* * *
76472627 TCTTCGATCTACTCTCT-GCTAATACAGAGATGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCTATC-AATACAGAGACGCCAAATCTGTCA
* * * *
76472671 TCTTTGATTTGCTCTCTATCAATACAAAGATGCCAAATCTG-CTA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTC-A
* *
76472715 TCTTCGATCTGCTCTCTGA-CAATATAGAGACGTCAAATCTGTCA
1 TCTTCGATCTGCTCTCT-ATCAATACAGAGACGCCAAATCTGTCA
* * * *
76472759 TCTTCGATCTGCTCTCTGTCAATAAAGAGATGTCAAATCTG-CTA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTC-A
* *
76472803 TCTTCGATATGCTCTCTGA-CAATATAGAGACGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCT-ATCAATACAGAGACGCCAAATCTGTCA
* * * * *
76472847 TCTTC-ATTCTACTCTCTGTCAATACAGAGATGTCAAATCTGTTA
1 TCTTCGA-TCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* *
76472891 TCTTCGATCTGCTCTCTAACAATATAGAGACGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* *
76472935 TCTTCGATCTGCTCTCTATCAATAAAGAGACACCAAATCTGTCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* * * *
76472979 CCTTCGATCTGCTCTCTGTCAATAC--AGATGCCAAATCTATCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* * *
76473021 TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
*
76473065 TCTTTGATCTGCTCTCTGA-CAATACAGAGACGCCAAATCTG
1 TCTTCGATCTGCTCTCT-ATCAATACAGAGACGCCAAATCTG
76473106 CTATCGGTGA
Statistics
Matches: 491, Mismatches: 60, Indels: 32
0.84 0.10 0.05
Matches are distributed among these distances:
42 38 0.08
43 4 0.01
44 443 0.90
45 6 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
Found at i:76472612 original size:88 final size:88
Alignment explanation
Indices: 76472495--76473105 Score: 838
Period size: 88 Copynumber: 7.0 Consensus size: 88
76472485 AGATCTACTG
* * * *
76472495 TCTTTGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGCTATCTTCAATCTGCTCTCTGTCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
*
76472560 ATACAGAGACGCCAAATCTATCA
66 ATACAGAGACGCCAAATCTGTCA
* *
76472583 TCTTCGATCTGCTCTCTATCAATATAGAGATGCCAAATCTG-TCATCTTCGATCTACTCTCTG-C
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGAC
*
76472646 TAATACAGAGATGCCAAATCTGTCA
65 -AATACAGAGACGCCAAATCTGTCA
* * *
76472671 TCTTTGATTTGCTCTCTATCAATACAAAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
* *
76472736 ATATAGAGACGTCAAATCTGTCA
66 ATACAGAGACGCCAAATCTGTCA
* * * *
76472759 TCTTCGATCTGCTCTCTGTCAATAAAGAGATGTCAAATCTGCTATCTTCGATATGCTCTCTGACA
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
*
76472824 ATATAGAGACGCCAAATCTGTCA
66 ATACAGAGACGCCAAATCTGTCA
* * * * *
76472847 TCTTC-ATTCTACTCTCTGTCAATACAGAGATGTCAAATCTGTTATCTTCGATCTGCTCTCTAAC
1 TCTTCGA-TCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
*
76472911 AATATAGAGACGCCAAATCTGTCA
65 AATACAGAGACGCCAAATCTGTCA
* ** * *
76472935 TCTTCGATCTGCTCTCTATCAATAAAGAGACACCAAATCTG-TCACCTTCGATCTGCTCTCTGTC
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGAC
* *
76472999 AATAC--AGATGCCAAATCTATCA
65 AATACAGAGACGCCAAATCTGTCA
* * *
76473021 TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCTCTGACA
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
76473086 ATACAGAGACGCCAAATCTG
66 ATACAGAGACGCCAAATCTG
76473106 CTATCGGTGA
Statistics
Matches: 464, Mismatches: 49, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
86 75 0.16
87 5 0.01
88 381 0.82
89 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (88 bp):
TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
ATACAGAGACGCCAAATCTGTCA
Found at i:76475338 original size:19 final size:19
Alignment explanation
Indices: 76475288--76475338 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
76475278 ACATTTCAAG
*
76475288 AATAAGTAATATCAATTATT
1 AATAAGTAATA-AAATTATT
76475308 AATAA-TAGATAAAATTATT
1 AATAAGTA-ATAAAATTATT
76475327 AATAAGTAATAA
1 AATAAGTAATAA
76475339 GTTTTTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 18 0.64
20 10 0.36
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (19 bp):
AATAAGTAATAAAATTATT
Found at i:76475555 original size:9 final size:9
Alignment explanation
Indices: 76475541--76475567 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
76475531 AAACCGTTAG
76475541 TTGATCGTC
1 TTGATCGTC
76475550 TTGATCGTC
1 TTGATCGTC
76475559 TTGATCGTC
1 TTGATCGTC
76475568 AAAGGCACTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (9 bp):
TTGATCGTC
Found at i:76475675 original size:17 final size:18
Alignment explanation
Indices: 76475647--76475688 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
76475637 TAAAAAAATT
**
76475647 AAATATATTTTTTTTAAA
1 AAATATATTTTTTCCAAA
76475665 AAATA-ATTTTTTCCAAA
1 AAATATATTTTTTCCAAA
76475682 AAATATA
1 AAATATA
76475689 AAAAAACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATATTTTTTCCAAA
Found at i:76475800 original size:17 final size:17
Alignment explanation
Indices: 76475778--76475811 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76475768 TTTAGATGAG
76475778 TTAAAAACTAAAAAAAT
1 TTAAAAACTAAAAAAAT
* *
76475795 TTAAAAATTATAAAAAT
1 TTAAAAACTAAAAAAAT
76475812 ATATATTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
TTAAAAACTAAAAAAAT
Found at i:76475877 original size:20 final size:23
Alignment explanation
Indices: 76475852--76475896 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
76475842 AAATTGAAAA
76475852 ATTC-AATAATTTTA-A-TATAT
1 ATTCAAATAATTTTATATTATAT
*
76475872 ATTCAAATATTTTTATATTATAT
1 ATTCAAATAATTTTATATTATAT
76475895 AT
1 AT
76475897 AAAAATTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 4 0.19
21 9 0.43
22 1 0.05
23 7 0.33
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (23 bp):
ATTCAAATAATTTTATATTATAT
Found at i:76475904 original size:21 final size:20
Alignment explanation
Indices: 76475852--76475904 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
76475842 AAATTGAAAA
*
76475852 ATTCAATAATTTTAATATAT
1 ATTCAAAAATTTTAATATAT
* *
76475872 ATTCAAATATTTTTATATTAT
1 ATTCAAAAATTTTAATA-TAT
76475893 ATAT-AAAAATTT
1 AT-TCAAAAATTT
76475905 CCAATGGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 14 0.52
21 12 0.44
22 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTCAAAAATTTTAATATAT
Found at i:76476027 original size:34 final size:35
Alignment explanation
Indices: 76475960--76476027 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 35
76475950 ATTCAAATAT
* **
76475960 AAAAATTATTAATTCAATTTGAAATTTTGAATTTA
1 AAAAATTATTAATTCAATTTCAAATTTCCAATTTA
* *
76475995 AAAAATTA-TATTTGAATTTCAAATTTCCAATTT
1 AAAAATTATTAATTCAATTTCAAATTTCCAATTT
76476028 GACTTTTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (35 bp):
AAAAATTATTAATTCAATTTCAAATTTCCAATTTA
Found at i:76477402 original size:26 final size:25
Alignment explanation
Indices: 76477345--76477402 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
76477335 TTCTTTGTAC
* * *
76477345 AAAGCTTCTACCATTTTATCATTTT
1 AAAGCTTCAACCATTTTACCATCTT
* *
76477370 CAAGCTTCAACTATTTCTACCATCTT
1 AAAGCTTCAACCATTT-TACCATCTT
76477396 AAAGCTT
1 AAAGCTT
76477403 TTAATCTTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.41
Consensus pattern (25 bp):
AAAGCTTCAACCATTTTACCATCTT
Found at i:76478911 original size:28 final size:31
Alignment explanation
Indices: 76478880--76478940 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
76478870 TTATATATTT
76478880 AGAATTTAG-T-CTTTACTTTTT-ATTTTAA
1 AGAATTTAGTTACTTTACTTTTTAATTTTAA
*
76478908 AGAATTTAGTTATTTTACTTTTTAAATTTTAA
1 AGAATTTAGTTACTTTACTTTTT-AATTTTAA
76478940 A
1 A
76478941 ATTCAAGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 9 0.32
29 1 0.04
30 10 0.36
32 8 0.29
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.56
Consensus pattern (31 bp):
AGAATTTAGTTACTTTACTTTTTAATTTTAA
Found at i:76484617 original size:7 final size:7
Alignment explanation
Indices: 76484605--76484633 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
76484595 AGCCCAACCG
76484605 AGGGACC
1 AGGGACC
76484612 AGGGACC
1 AGGGACC
76484619 AGGGACC
1 AGGGACC
76484626 AGGGACC
1 AGGGACC
76484633 A
1 A
76484634 TTTGAGCGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.28, G:0.41, T:0.00
Consensus pattern (7 bp):
AGGGACC
Found at i:76488641 original size:30 final size:30
Alignment explanation
Indices: 76488606--76488662 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
76488596 TAGGCACATC
*
76488606 CACACAGGTAAACCACATGCCCGTGTGAGG
1 CACACAGGCAAACCACATGCCCGTGTGAGG
** *
76488636 CACACAGGCAGGCCACATGCCTGTGTG
1 CACACAGGCAAACCACATGCCCGTGTG
76488663 TCATGGCCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.32, G:0.28, T:0.14
Consensus pattern (30 bp):
CACACAGGCAAACCACATGCCCGTGTGAGG
Found at i:76496112 original size:19 final size:21
Alignment explanation
Indices: 76496079--76496118 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
76496069 CCTGTAACCC
*
76496079 TAAATTCTCCTTTTC-CTATT
1 TAAATTCTCCCTTTCACTATT
76496099 TAAA-TCTCCCTTTCACTATT
1 TAAATTCTCCCTTTCACTATT
76496119 CATCATCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.50
Consensus pattern (21 bp):
TAAATTCTCCCTTTCACTATT
Found at i:76500734 original size:24 final size:24
Alignment explanation
Indices: 76500707--76500753 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
76500697 ATAAAGATAA
76500707 TGTATTATTTACATACAAACTTAT
1 TGTATTATTTACATACAAACTTAT
76500731 TGTATTATTTACATACAAACTTA
1 TGTATTATTTACATACAAACTTA
76500754 CATACTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (24 bp):
TGTATTATTTACATACAAACTTAT
Found at i:76528386 original size:29 final size:28
Alignment explanation
Indices: 76528327--76528435 Score: 98
Period size: 29 Copynumber: 3.8 Consensus size: 28
76528317 TACCTGTATC
* *
76528327 TGGCCCATTAAGCCCAATCATATTCAT-A
1 TGGCCCATTAGGCCCAATCACATT-ATAA
*
76528355 TGGCCCATTAGGCCTCAATCACCTTATAA
1 TGGCCCATTAGGCC-CAATCACATTATAA
76528384 TGGCCC-TTAAGGCCCAAATCACATT-TATA
1 TGGCCCATT-AGGCCC-AATCACATTATA-A
* *
76528413 TGGCCCCGTTAGGCCCAGTCACA
1 TGG-CCCATTAGGCCCAATCACA
76528436 CATTGTCGCA
Statistics
Matches: 69, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
28 20 0.29
29 38 0.55
30 9 0.13
31 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTATAA
Found at i:76532039 original size:30 final size:30
Alignment explanation
Indices: 76531961--76532042 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
76531951 TTATGATATG
*
76531961 ACAAAATTACAATTTTACCCCTCATAGTTT
1 ACAAAATTACAATTTTGCCCCTCATAGTTT
76531991 ACAAAATTACAATTTTGCCCCTCATAGTTT
1 ACAAAATTACAATTTTGCCCCTCATAGTTT
**
76532021 ACAAAATTACAAAATTGCCCCT
1 ACAAAATTACAATTTTGCCCCT
76532043 AGGCTCGTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (30 bp):
ACAAAATTACAATTTTGCCCCTCATAGTTT
Found at i:76539329 original size:47 final size:47
Alignment explanation
Indices: 76539182--76539351 Score: 195
Period size: 47 Copynumber: 3.6 Consensus size: 47
76539172 ATCGTCGTCG
* * *
76539182 ATGCCATGTCCCAGACATGGTCCTACACTAGCAGACATATA--ATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA--AGGA-ACATATATCATCACCA
* * *
76539230 ATGCCATG-CACCAAACATGGTCTTATGC-AGGTACATATATCATCACCG
1 ATGCCATGTC-CCAGACATGGTCTTA--CAAGGAACATATATCATCACCA
*
76539278 ATGCCATGTCCCAGACTTGGTCTTACAAGGAACATATATCATCACCA
1 ATGCCATGTCCCAGACATGGTCTTACAAGGAACATATATCATCACCA
76539325 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
76539352 CGACACATTT
Statistics
Matches: 104, Mismatches: 11, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
46 8 0.08
47 47 0.45
48 47 0.45
49 1 0.01
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACAAGGAACATATATCATCACCA
Found at i:76543474 original size:41 final size:42
Alignment explanation
Indices: 76543429--76543542 Score: 140
Period size: 41 Copynumber: 2.7 Consensus size: 42
76543419 GACATTAAGG
* *
76543429 TTGTGTATGACCATATTTGGGATATGGCATCGCTATGAGAT-
1 TTGTGTAAGACCATATTTGGGATATGGCATCGATATGAGATC
** *
76543470 TTGTGTAAGACCATAGCTGGGATATTGGAATCGATATGAGATC
1 TTGTGTAAGACCATATTTGGGATA-TGGCATCGATATGAGATC
***
76543513 CCATGTAAGACCATATTTGGGATATGGCAT
1 TTGTGTAAGACCATATTTGGGATATGGCAT
76543543 TGGTATGGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 21 0.35
42 20 0.33
43 19 0.32
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (42 bp):
TTGTGTAAGACCATATTTGGGATATGGCATCGATATGAGATC
Found at i:76560574 original size:39 final size:39
Alignment explanation
Indices: 76560531--76560738 Score: 321
Period size: 39 Copynumber: 5.3 Consensus size: 39
76560521 ACTAAGATCT
76560531 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
76560570 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
76560609 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
* * *
76560648 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCC
* *
76560688 GAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCC
76560728 GAAGGCATTTG
1 GAAGGCATTTG
76560739 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 112 0.71
40 46 0.29
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
Found at i:76560620 original size:78 final size:79
Alignment explanation
Indices: 76560477--76560738 Score: 324
Period size: 78 Copynumber: 3.3 Consensus size: 79
76560467 TTGAATGATG
* * *
76560477 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGAT-CTGAAGGC
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAA-ATCCGGGCTAAG-TCCCGAAGGC
76560537 ATTTGTGCGAGATACTAAT
61 ATTTGTGCGAGATACTAAT
*
76560556 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
76560620 TGCGAGATACTAAT
66 TGCGAGATACTAAT
* *
76560634 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
76560699 TGCGA-ATTACT-AT
66 TGCGAGA-TACTAAT
* *
76560712 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
76560739 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
78 85 0.52
79 55 0.33
80 24 0.15
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAT
Found at i:76560752 original size:40 final size:39
Alignment explanation
Indices: 76560478--76560738 Score: 245
Period size: 39 Copynumber: 6.6 Consensus size: 39
76560468 TGAATGATGT
* * *
76560478 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* * *
76560517 CCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
76560557 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
76560596 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-A
76560635 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* *
76560673 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAA
*
76560714 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76560739 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 12, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
39 128 0.64
40 62 0.31
41 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:76578485 original size:12 final size:11
Alignment explanation
Indices: 76578449--76578491 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
76578439 AATTGGTCAT
76578449 GGAGAGATTGTA
1 GGAGAGATTG-A
*
76578461 GGAGGGAGTTGA
1 GGAGAGA-TTGA
76578473 GGAGAGATATGA
1 GGAGAGAT-TGA
76578485 GGAGAGA
1 GGAGAGA
76578492 ATTAAGGGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 1 0.04
12 23 0.85
13 3 0.11
ACGTcount: A:0.35, C:0.00, G:0.49, T:0.16
Consensus pattern (11 bp):
GGAGAGATTGA
Found at i:76579942 original size:27 final size:27
Alignment explanation
Indices: 76579904--76580003 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
76579894 CATACCTGAA
*
76579904 CCCTCATATGATAAAATGATGATATTG
1 CCCTTATATGATAAAATGATGATATTG
* *
76579931 CCCTTATGTGATAAAATGACGATATTG
1 CCCTTATATGATAAAATGATGATATTG
* *
76579958 CCCTTATATGATAAAATGATGATTTTA
1 CCCTTATATGATAAAATGATGATATTG
* * *
76579985 CCATTATAGGGTAAAATGA
1 CCCTTATATGATAAAATGA
76580004 CCGAAATACC
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (27 bp):
CCCTTATATGATAAAATGATGATATTG
Found at i:76580108 original size:80 final size:81
Alignment explanation
Indices: 76579990--76580176 Score: 218
Period size: 80 Copynumber: 2.3 Consensus size: 81
76579980 TTTTACCATT
* * * *
76579990 ATAGGGTAAAATGACCGA-AATACCCCCATAGGGTAAAATGA-TCAAAATACCCCTATAGGGTAA
1 ATAGGGTAAAATGA-CTATAATACCCTCATAGGATAAAATGACT-AAAATACCCCTATAAGGTAA
76580053 AATGACTATAATACCCCC
64 AATGACTATAATACCCCC
** * *
76580071 ATAGGGT-AAATGACTATAATACCCTCATAGGATAAAATGACTGTAATACCTCTGTAAGGTAAAA
1 ATAGGGTAAAATGACTATAATACCCTCATAGGATAAAATGACTAAAATACCCCTATAAGGTAAAA
* * *
76580135 TGACTGTAATACCTCT
66 TGACTATAATACCCCC
* *
76580151 GTAGGGTAAAATGACTGTAATACCCT
1 ATAGGGTAAAATGACTATAATACCCT
76580177 TGTAAAATAA
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
79 2 0.02
80 63 0.70
81 25 0.28
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (81 bp):
ATAGGGTAAAATGACTATAATACCCTCATAGGATAAAATGACTAAAATACCCCTATAAGGTAAAA
TGACTATAATACCCCC
Found at i:76580180 original size:27 final size:27
Alignment explanation
Indices: 76579983--76580177 Score: 184
Period size: 27 Copynumber: 7.3 Consensus size: 27
76579973 ATGATGATTT
* * *
76579983 TACCATTATAGGGTAAAATGACCGAAA
1 TACCCTTATAGGGTAAAATGACTGTAA
** **
76580010 TACCCCCATAGGGTAAAATGA-TCAAAA
1 TACCCTTATAGGGTAAAATGACT-GTAA
* *
76580037 TACCCCTATAGGGTAAAATGACTATAA
1 TACCCTTATAGGGTAAAATGACTGTAA
** *
76580064 TACCCCCATAGGGT-AAATGACTATAA
1 TACCCTTATAGGGTAAAATGACTGTAA
* *
76580090 TACCCTCATAGGATAAAATGACTGTAA
1 TACCCTTATAGGGTAAAATGACTGTAA
76580117 TACCTCTGTA-A-GGTAAAATGACTGTAA
1 TACC-CT-TATAGGGTAAAATGACTGTAA
*
76580144 TA-CCTCTGTAGGGTAAAATGACTGTAA
1 TACCCT-TATAGGGTAAAATGACTGTAA
76580171 TACCCTT
1 TACCCTT
76580178 GTAAAATAAA
Statistics
Matches: 145, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
25 3 0.02
26 26 0.18
27 108 0.74
28 7 0.05
29 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (27 bp):
TACCCTTATAGGGTAAAATGACTGTAA
Found at i:76580181 original size:54 final size:53
Alignment explanation
Indices: 76579989--76580175 Score: 216
Period size: 54 Copynumber: 3.5 Consensus size: 53
76579979 ATTTTACCAT
* * * *
76579989 TATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA-TCAAAATACCCC
1 TATAGGGTAAAATGACTGTAATACCCCCATAAGGTAAAATGACT-ATAATA-CCC
* *
76580043 TATAGGGTAAAATGACTATAATACCCCCATAGGGT-AAATGACTATAATACCC
1 TATAGGGTAAAATGACTGTAATACCCCCATAAGGTAAAATGACTATAATACCC
* * ** *
76580095 TCATAGGATAAAATGACTGTAATACCTCTGTAAGGTAAAATGACTGTAATACCTC
1 T-ATAGGGTAAAATGACTGTAATACCCCCATAAGGTAAAATGACTATAATACC-C
*
76580150 TGTAGGGTAAAATGACTGTAATACCC
1 TATAGGGTAAAATGACTGTAATACCC
76580176 TTGTAAAATA
Statistics
Matches: 115, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
52 4 0.03
53 39 0.34
54 70 0.61
55 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (53 bp):
TATAGGGTAAAATGACTGTAATACCCCCATAAGGTAAAATGACTATAATACCC
Found at i:76580187 original size:27 final size:27
Alignment explanation
Indices: 76580078--76580194 Score: 139
Period size: 27 Copynumber: 4.3 Consensus size: 27
76580068 CCCATAGGGT
* * *
76580078 AAATGACTATAATACC-CTCATAGGATA
1 AAATGACTGTAATACCTCT-GTAAGATA
*
76580105 AAATGACTGTAATACCTCTGTAAGGTA
1 AAATGACTGTAATACCTCTGTAAGATA
* *
76580132 AAATGACTGTAATACCTCTGTAGGGTA
1 AAATGACTGTAATACCTCTGTAAGATA
*
76580159 AAATGACTGTAATACC-CTTGTAAAATA
1 AAATGACTGTAATACCTC-TGTAAGATA
76580186 AAATGACTG
1 AAATGACTG
76580195 ATTTGTTCTA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 77 0.96
28 2 0.03
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (27 bp):
AAATGACTGTAATACCTCTGTAAGATA
Found at i:76580188 original size:54 final size:54
Alignment explanation
Indices: 76580078--76580194 Score: 157
Period size: 54 Copynumber: 2.2 Consensus size: 54
76580068 CCCATAGGGT
* **
76580078 AAATGACTATAATACCCTCATAGGATAAAATGACTGTAATACCTCTGTAAGGTA
1 AAATGACTGTAATACCCTCATAGGATAAAATGACTGTAATACCTCTGTAAAATA
* *
76580132 AAATGACTGTAATA-CCTCTGTAGGGTAAAATGACTGTAATACC-CTTGTAAAATA
1 AAATGACTGTAATACCCTC-ATAGGATAAAATGACTGTAATACCTC-TGTAAAATA
76580186 AAATGACTG
1 AAATGACTG
76580195 ATTTGTTCTA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 5 0.09
54 51 0.91
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (54 bp):
AAATGACTGTAATACCCTCATAGGATAAAATGACTGTAATACCTCTGTAAAATA
Found at i:76580614 original size:18 final size:18
Alignment explanation
Indices: 76580588--76580655 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
76580578 GTTTGCATTT
76580588 TGCACTGATTACTGTTAC
1 TGCACTGATTACTGTTAC
* *
76580606 TGCATTGATCA-TGGTTAC
1 TGCACTGATTACT-GTTAC
* **
76580624 TGCACTAATTACTGACAC
1 TGCACTGATTACTGTTAC
76580642 TGCTACT-ATTACTG
1 TGC-ACTGATTACTG
76580656 AAATGGGCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
17 1 0.03
18 35 0.88
19 4 0.10
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (18 bp):
TGCACTGATTACTGTTAC
Done.