Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 233 of 316
Found at i:76585117 original size:21 final size:21
Alignment explanation
Indices: 76585084--76585125 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
76585074 GTACGAGATT
76585084 TGCAATTCAGTGCCTATATTA
1 TGCAATTCAGTGCCTATATTA
* * *
76585105 TGCACTTCGGTGCCTCTATTA
1 TGCAATTCAGTGCCTATATTA
76585126 CACTTTGATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (21 bp):
TGCAATTCAGTGCCTATATTA
Found at i:76585150 original size:21 final size:20
Alignment explanation
Indices: 76585126--76585201 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
76585116 GCCTCTATTA
*
76585126 CACTTTGATGTCTCTGATTTG
1 CACTTTGATGCCTCTG-TTTG
** *
76585147 CACTACGATGCCTCTGCTTG
1 CACTTTGATGCCTCTGTTTG
*
76585167 CACATTTG-TGCCTGTGTTTG
1 CAC-TTTGATGCCTCTGTTTG
*
76585187 CACTTTGGTGCCTCT
1 CACTTTGATGCCTCT
76585202 TTATTGCATT
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
19 4 0.09
20 25 0.57
21 15 0.34
ACGTcount: A:0.12, C:0.26, G:0.21, T:0.41
Consensus pattern (20 bp):
CACTTTGATGCCTCTGTTTG
Found at i:76585178 original size:20 final size:20
Alignment explanation
Indices: 76585105--76585201 Score: 63
Period size: 20 Copynumber: 4.8 Consensus size: 20
76585095 GCCTATATTA
* *
76585105 TGCACTTCGGTGCCTCT-AT
1 TGCACTTTGGTGCCTCTGCT
* * * *
76585124 TACACTTTGATGTCTCTGATT
1 TGCACTTTGGTGCCTCTG-CT
** *
76585145 TGCACTACGATGCCTCTGCT
1 TGCACTTTGGTGCCTCTGCT
* *
76585165 TGCACATTT-GTGCCTGTGTT
1 TGCAC-TTTGGTGCCTCTGCT
76585185 TGCACTTTGGTGCCTCT
1 TGCACTTTGGTGCCTCT
76585202 TTATTGCATT
Statistics
Matches: 58, Mismatches: 16, Indels: 7
0.72 0.20 0.09
Matches are distributed among these distances:
19 16 0.28
20 26 0.45
21 16 0.28
ACGTcount: A:0.12, C:0.27, G:0.21, T:0.40
Consensus pattern (20 bp):
TGCACTTTGGTGCCTCTGCT
Found at i:76591760 original size:43 final size:43
Alignment explanation
Indices: 76591712--76591937 Score: 244
Period size: 43 Copynumber: 5.3 Consensus size: 43
76591702 TGAGACTACA
* *
76591712 TGTAAGACAATGTCTGGGACATTGGCATTGTATTGTGATTATG
1 TGTAAGACCATGTATGGGACATTGGCATTGTATTGTGATTATG
*
76591755 TGTAAGACCATGTATGGGACATTGGAATTGTATTGTGATTATG
1 TGTAAGACCATGTATGGGACATTGGCATTGTATTGTGATTATG
* *
76591798 TGTAAGACCATGTATGGGACATTGGCATCAT-TA-TATGATTACG
1 TGTAAGACCATGTATGGGACATTGGCAT--TGTATTGTGATTATG
* * * * *
76591841 TGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-CGATTTTG
1 TGTAAGACCATGTATGGGACATTGGCATTG-TATTGTGATTATG
* * * * **
76591884 TGTAAGACCCTGTATGGGATAGTGGCATTG-ATATGTGATAACA
1 TGTAAGACCATGTATGGGACATTGGCATTGTAT-TGTGATTATG
76591927 TGTAAGACCAT
1 TGTAAGACCAT
76591938 ATCTAGGATA
Statistics
Matches: 153, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 147 0.96
44 3 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTATGGGACATTGGCATTGTATTGTGATTATG
Found at i:76597620 original size:17 final size:18
Alignment explanation
Indices: 76597594--76597627 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
76597584 CTTATTTTTA
76597594 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
76597611 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
76597628 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:76606844 original size:15 final size:14
Alignment explanation
Indices: 76606826--76606880 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 14
76606816 TCTGAGATGG
*
76606826 AGAAGTCCAGAATAA
1 AGAAATCCA-AATAA
76606841 AGAAATCCAAGATAA
1 AGAAATCCAA-ATAA
76606856 AGAAATCCATAATAA
1 AGAAATCCA-AATAA
*
76606871 GGAAATCCAA
1 AGAAATCCAA
76606881 TTTACAATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
14 2 0.06
15 33 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.15
Consensus pattern (14 bp):
AGAAATCCAAATAA
Found at i:76614443 original size:81 final size:81
Alignment explanation
Indices: 76614333--76614500 Score: 187
Period size: 81 Copynumber: 2.1 Consensus size: 81
76614323 TTATTGATAA
* * *
76614333 TCTTTTGGTGAACTCTCCAATTCGCCGAAGTAC-TAACAAACCCTTAGTTCATTGAAACACTAGC
1 TCTTTTAGTGAACTCTCCAATTCGCCGAAGTACAT-ACAAACCCCTAGTTCACTGAAACACTAGC
76614397 AAACTCATTACTAATAC
65 AAACTCATTACTAATAC
* * * * * *
76614414 TCTTTTAGTGAACTC-CCTAGTTCGTCGAAGTACATGCGAACCCCTAGTTCACTGAAACATTGGC
1 TCTTTTAGTGAACTCTCC-AATTCGCCGAAGTACATACAAACCCCTAGTTCACTGAAACACTAGC
* * * *
76614478 GAATTCCTTACTGATAC
65 AAACTCATTACTAATAC
76614495 TCTTTT
1 TCTTTT
76614501 GGAGAATTTC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 2 0.03
81 69 0.96
82 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (81 bp):
TCTTTTAGTGAACTCTCCAATTCGCCGAAGTACATACAAACCCCTAGTTCACTGAAACACTAGCA
AACTCATTACTAATAC
Found at i:76618211 original size:34 final size:34
Alignment explanation
Indices: 76618159--76618224 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
76618149 TAGATGAGCC
*
76618159 AATTGATGAGTACGATGGGAGATATTAAAAGGCA
1 AATTGATGAGTACAATGGGAGATATTAAAAGGCA
* *
76618193 AATTGATGTGTATAATGGGAGATATTAAAAGG
1 AATTGATGAGTACAATGGGAGATATTAAAAGG
76618225 AAGGGAAGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.41, C:0.03, G:0.29, T:0.27
Consensus pattern (34 bp):
AATTGATGAGTACAATGGGAGATATTAAAAGGCA
Found at i:76622101 original size:40 final size:40
Alignment explanation
Indices: 76622053--76622360 Score: 535
Period size: 40 Copynumber: 7.7 Consensus size: 40
76622043 GCAAACACAT
* * *
76622053 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
76622093 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
76622133 TTGCCTTCGGGTCATAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
76622173 TTGCCTTCAGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
76622213 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
76622253 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
76622293 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGTATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
76622333 TTGCCTTCTGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
76622361 TCCAATGCTC
Statistics
Matches: 255, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 255 1.00
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:76627776 original size:27 final size:27
Alignment explanation
Indices: 76627738--76627792 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
76627728 ATTTCACAAG
76627738 AATGTTCATTCTTGATTATAGACTTGT
1 AATGTTCATTCTTGATTATAGACTTGT
76627765 AATGTTCATTCTTGATTATAGACTTGT
1 AATGTTCATTCTTGATTATAGACTTGT
76627792 A
1 A
76627793 CTCTTAGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (27 bp):
AATGTTCATTCTTGATTATAGACTTGT
Found at i:76633186 original size:98 final size:98
Alignment explanation
Indices: 76633017--76633217 Score: 393
Period size: 98 Copynumber: 2.1 Consensus size: 98
76633007 CAGTATATTA
76633017 TTGAAAACAAATGCGCATCCCAGTGGCTAGCAGGATGCTGGGCAACCTGGAGGTCCAAGGTTCAA
1 TTGAAAACAAATGCGCATCCCAGTGGCTAGCAGGATGCTGGGCAACCTGGAGGTCCAAGGTTCAA
76633082 ACAGCGTTATGTGCAAAACGGGGTTTATTTTTG
66 ACAGCGTTATGTGCAAAACGGGGTTTATTTTTG
76633115 TTGAAAACAAATGCGCATCCCAGTGGCTAGCAGGATGCTGGGCAACCTGGAGGTCCAAGGTTCAA
1 TTGAAAACAAATGCGCATCCCAGTGGCTAGCAGGATGCTGGGCAACCTGGAGGTCCAAGGTTCAA
76633180 ACAGCGTTATGTGCAAAACGGGGTTTATTTTTG
66 ACAGCGTTATGTGCAAAACGGGGTTTATTTTTG
*
76633213 CTGAA
1 TTGAA
76633218 CGCGCGTGGG
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 102 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (98 bp):
TTGAAAACAAATGCGCATCCCAGTGGCTAGCAGGATGCTGGGCAACCTGGAGGTCCAAGGTTCAA
ACAGCGTTATGTGCAAAACGGGGTTTATTTTTG
Found at i:76634828 original size:25 final size:25
Alignment explanation
Indices: 76634799--76634846 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
76634789 TTATAATATG
* *
76634799 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
76634824 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
76634847 GTTTAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:76634913 original size:20 final size:20
Alignment explanation
Indices: 76634890--76634947 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
76634880 TAAACATGGT
76634890 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
76634910 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
76634930 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
76634948 GTGTATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:76634930 original size:11 final size:11
Alignment explanation
Indices: 76634894--76634947 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
76634884 CATGGTATGT
76634894 ATGATATGCAC
1 ATGATATGCAC
* *
76634905 ATGACATG--T
1 ATGATATGCAC
76634914 ATGATATGCAC
1 ATGATATGCAC
*
76634925 ATGATATG--T
1 ATGATATGCAC
76634934 ATGATATGCAC
1 ATGATATGCAC
76634945 ATG
1 ATG
76634948 GTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:76635117 original size:24 final size:23
Alignment explanation
Indices: 76634998--76635116 Score: 202
Period size: 23 Copynumber: 5.1 Consensus size: 23
76634988 AGGAAGTGCA
76634998 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
76635021 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
76635044 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
76635067 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
76635090 AAAAGGGCTTTTGCCCCAATTATT
1 -AAAGGGCTTATGCCCCAGTTATT
76635114 AAA
1 AAA
76635117 AAAGGCTAGG
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
23 70 0.77
24 21 0.23
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:76637374 original size:17 final size:19
Alignment explanation
Indices: 76637332--76637375 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
76637322 ATGAAATTTT
*
76637332 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
76637351 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
76637369 AA-TATTA
1 AATTATTA
76637376 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:76639877 original size:20 final size:20
Alignment explanation
Indices: 76639854--76639891 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
76639844 TAAACATGGT
76639854 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
76639874 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
76639892 GTGTATTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:76640054 original size:25 final size:24
Alignment explanation
Indices: 76639941--76640058 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
76639931 GAGGAAGTGC
76639941 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76639965 -AAAGGGTTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76639988 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76640011 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76640035 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76640059 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 44 0.51
24 31 0.36
25 11 0.13
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76663983 original size:40 final size:39
Alignment explanation
Indices: 76663871--76664053 Score: 201
Period size: 39 Copynumber: 4.6 Consensus size: 39
76663861 CGGATGATAA
* *
76663871 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-T
* * * *
76663911 CCGGGCTAA-ACCTGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
* * *
76663950 CCGGGCTAAGTCCCGAAGGCATTGGTGCCAGTTATTGAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
76663989 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
76664029 CCGGG-TCAAGTCCCGAAGGCATTTG
1 CCGGGCT-AAGTCCCGAAGGCATTTG
76664054 AGCAAGTAGT
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 65 0.54
40 54 0.45
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:76664007 original size:79 final size:78
Alignment explanation
Indices: 76663867--76664051 Score: 239
Period size: 79 Copynumber: 2.3 Consensus size: 78
76663857 TATTCGGATG
* *
76663867 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTAATTCCGGGCTAAACCTGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCCAGTAACTAA-TCCGGGCTAAACCTGAAGGCAA
*
76663932 TTGTGCGAGTTATT
65 TTGTGCGAGTTACT
* * * **
76663946 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCCAGTTATTGAA-CCGGGCTAAGTCTCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCCAGTAACT-AATCCGGGCTAAACCT-GAAGGCA
*
76664010 TTTGTGCGAGTTACT
64 ATTGTGCGAGTTACT
76664025 ATAACCGGG-TCAAGTCCCGAAGGCATT
1 ATAACCGGGCT-AAGTCCCGAAGGCATT
76664052 TGAGCAAGTA
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
78 12 0.13
79 79 0.85
80 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCCAGTAACTAATCCGGGCTAAACCTGAAGGCAAT
TGTGCGAGTTACT
Found at i:76664085 original size:79 final size:76
Alignment explanation
Indices: 76663867--76664086 Score: 228
Period size: 79 Copynumber: 2.8 Consensus size: 76
76663857 TATTCGGATG
* *
76663867 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTAATTCCGGGCTAAA-CCTGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTAA-T-CGGGCTAAATCC-GAAGGCA
*
76663931 ATTGTGCGAGTTATT
62 ATTGTGCGAGTTACT
* * * * * *
76663946 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCCAGTTATTGAACCGGGCTAAGTCTCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATT-AATCGGGCTAAATC-CGAAGGCAA
76664011 TTGTGCGAGTTACT
63 TTGTGCGAGTTACT
* *
76664025 ATAACCGGG-TCAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATCTGGCTAAATTCCGAAGG
1 ATAACCGGGCT-AAGTCCCGAAGGCATTTGTGCAAGTA-TTA-ATCGGGCTAAA-TCCGAAGG
76664087 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
78 12 0.10
79 100 0.85
80 6 0.05
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (76 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTAATCGGGCTAAATCCGAAGGCAATTG
TGCGAGTTACT
Found at i:76666431 original size:40 final size:40
Alignment explanation
Indices: 76666335--76666518 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 40
76666325 TATTCGGATG
*
76666335 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT--G-CTAGTTGCT
*
76666378 ATA-CGCGGGCTAAGTCCCGAAGACATTTGTGCTAG-TGACT
1 ATATC-CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* **
76666418 ATATCCGAGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
76666458 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
*
76666498 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
76666519 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 15 0.12
40 77 0.62
41 4 0.03
42 1 0.01
43 27 0.22
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:76670974 original size:30 final size:30
Alignment explanation
Indices: 76670938--76670999 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
76670928 CAAGTAGCCG
76670938 AAGCTAGCTTAAATCGCACACTTAGTGCCA
1 AAGCTAGCTTAAATCGCACACTTAGTGCCA
* * *
76670968 AAGCTAGTTTAAATTGTACACTTAGTGCCA
1 AAGCTAGCTTAAATCGCACACTTAGTGCCA
76670998 AA
1 AA
76671000 ACTTCCAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (30 bp):
AAGCTAGCTTAAATCGCACACTTAGTGCCA
Found at i:76678125 original size:30 final size:30
Alignment explanation
Indices: 76678091--76678152 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
76678081 CAAGTAGTCG
76678091 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
*
76678121 AAGCTAGTTTAAATCGTACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
76678151 AA
1 AA
76678153 ACTTCTGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:76692111 original size:27 final size:27
Alignment explanation
Indices: 76692029--76692113 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
76692019 CAAAACAATC
* * * *
76692029 ATTTTACACTATAGGGGTATGTCTGTC
1 ATTTTACACTACAAGGGTATTTCTGTA
*
76692056 ATTTTACACTACAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCTGTA
*
76692083 ATTTTACACTACAAGGGTATTTCTATA
1 ATTTTACACTACAAGGGTATTTCTGTA
76692110 ATTT
1 ATTT
76692114 ATCTTTATTA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.41
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCTGTA
Found at i:76693968 original size:80 final size:79
Alignment explanation
Indices: 76693884--76694055 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
76693874 GGACTAAGAT
*
76693884 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
76693948 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
76693964 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
76694029 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
76694043 CCGAAGGCATTTG
1 CCGAAGGCATTTG
76694056 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:76694035 original size:39 final size:39
Alignment explanation
Indices: 76693831--76694053 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
76693821 TTGAATGCTG
* * * * *
76693831 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
76693871 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
76693910 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
76693951 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
76693991 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
76694030 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
76694054 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:76694073 original size:79 final size:80
Alignment explanation
Indices: 76693911--76694088 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
76693901 AGATACAAAT
* * * *
76693911 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
76693976 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
76693991 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
76694055 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
76694070 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
76694089 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:76695611 original size:28 final size:28
Alignment explanation
Indices: 76695578--76695641 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
76695568 TGGCCCCTTT
*
76695578 AGGCCCAATCTCGTTTACATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
*
76695606 AGGCCCAATCTCGTTCATATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
76695634 AGGCCCAA
1 AGGCCCAA
76695642 CTACTTCCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.22
Consensus pattern (28 bp):
AGGCCCAATCTCGTTCACATGGCCCATC
Found at i:76709315 original size:14 final size:14
Alignment explanation
Indices: 76709298--76709327 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76709288 CATACTTATG
76709298 TATGTATACATATA
1 TATGTATACATATA
*
76709312 TATGTATATATATA
1 TATGTATACATATA
76709326 TA
1 TA
76709328 CTTCGGAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (14 bp):
TATGTATACATATA
Found at i:76723094 original size:29 final size:29
Alignment explanation
Indices: 76723056--76723172 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
76723046 TGGCCCATCT
*
76723056 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAAATCA
*
76723085 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAAATCA
* * * *
76723114 TATTCATATGGCCTATTAGGCTCAAATCA
1 CATTCATATGGCCCATCAGGCCCAAATCA
* * * * *
76723143 CCTTTATATGGTCCGTTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAAATCA
76723172 C
1 C
76723173 CTTATATTCA
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAAATCA
Found at i:76723114 original size:23 final size:26
Alignment explanation
Indices: 76723047--76723126 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 26
76723037 TGTCCCACTT
*
76723047 GGCCCATCTCATTCATATGGCCCATCA
1 GGCCCA-CACATTCATATGGCCCATCA
76723074 GGCCCAATTCACATTCATATGGCCCATCA
1 GGCCC-A--CACATTCATATGGCCCATCA
*
76723103 GGCCCAATTCATATTCATATGGCC
1 GGCCC-A--CACATTCATATGGCC
76723127 TATTAGGCTC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 5 0.10
28 1 0.02
29 43 0.88
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (26 bp):
GGCCCACACATTCATATGGCCCATCA
Found at i:76724102 original size:31 final size:31
Alignment explanation
Indices: 76724064--76724126 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
76724054 TCAAGTAACC
76724064 GATTTCATATATCTGAATCCCTACGAGGTAA
1 GATTTCATATATCTGAATCCCTACGAGGTAA
*
76724095 GATTTCATCTATCTGAATCCCTACGAGGTAA
1 GATTTCATATATCTGAATCCCTACGAGGTAA
76724126 G
1 G
76724127 TCGATATACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (31 bp):
GATTTCATATATCTGAATCCCTACGAGGTAA
Found at i:76724377 original size:42 final size:42
Alignment explanation
Indices: 76724330--76724444 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 42
76724320 TTTTGCATGA
* **
76724330 AAGACCATGTCTGGGACATTGGCATCGTATCTGATTTCGTGT
1 AAGACCATGTCTGGGACATTGGCATCGTATCTGATTACAAGT
* * * * * * *
76724372 AAGACCCTATCTAGGATAGTGGCATCGATGTTTGATTACAAGT
1 AAGACCATGTCTGGGACATTGGCATCG-TATCTGATTACAAGT
* *
76724415 AAGACCACGTCTGGGACATTGGCATTGTAT
1 AAGACCATGTCTGGGACATTGGCATCGTAT
76724445 ATGCTTTCTG
Statistics
Matches: 54, Mismatches: 18, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
42 24 0.44
43 30 0.56
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
AAGACCATGTCTGGGACATTGGCATCGTATCTGATTACAAGT
Found at i:76731883 original size:42 final size:42
Alignment explanation
Indices: 76731837--76731956 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 42
76731827 ATCTGTTTTG
*
76731837 CGTGTAAGACCATGTCTGAGACATTGGCATCGTATTTGATTT
1 CGTGTAAGACCATGTCTGAGACATTGGCATCGTATTTGATTA
* * * ** * *
76731879 CGTGTAAGACCCTGTTTGGGGTAGTGGCATCGATGTTTGATTA
1 CGTGTAAGACCATGTCTGAGACATTGGCATCG-TATTTGATTA
* * * * *
76731922 CATGTAAAACCACGTCTGAGACGTTGGCATTGTAT
1 CGTGTAAGACCATGTCTGAGACATTGGCATCGTAT
76731957 ATGTGTAACA
Statistics
Matches: 57, Mismatches: 20, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
42 28 0.49
43 29 0.51
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGAGACATTGGCATCGTATTTGATTA
Found at i:76733162 original size:27 final size:27
Alignment explanation
Indices: 76733109--76733162 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
76733099 TGTCATGTGA
* *
76733109 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
** *
76733136 AATTGAATGTTAAATTACTATTGCATG
1 AATTGAATGGCAAATTACTATTACATG
76733163 GGTTGTATGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:76733648 original size:49 final size:49
Alignment explanation
Indices: 76733409--76733653 Score: 292
Period size: 49 Copynumber: 4.9 Consensus size: 49
76733399 TCTATTCTGA
* *
76733409 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
76733458 GGTCGCATGTGTAGTGCTAAGTGCAGGCTACTACGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
76733508 CGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
76733558 AGGTCACGTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
76733608 TGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
76733654 GCCTTGTCTA
Statistics
Matches: 164, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
49 81 0.49
50 46 0.28
51 37 0.23
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:76736544 original size:20 final size:20
Alignment explanation
Indices: 76736506--76736544 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
76736496 TTAAGTTCTT
76736506 ATTTAATGTGAATGAATGAC
1 ATTTAATGTGAATGAATGAC
*
76736526 ATTTATTGT-AATGATATGA
1 ATTTAATGTGAATGA-ATGA
76736545 TTATTTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (20 bp):
ATTTAATGTGAATGAATGAC
Found at i:76736975 original size:22 final size:23
Alignment explanation
Indices: 76736950--76736999 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
76736940 AAGTACTGGC
*
76736950 AGTTTTAACTACAAA-CACTGAT
1 AGTTTTAACTACAAATCACTGAA
* *
76736972 AG-TTTATCTACAAATTACTGAA
1 AGTTTTAACTACAAATCACTGAA
76736994 AGTTTT
1 AGTTTT
76737000 CATCTGCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 11 0.48
22 9 0.39
23 3 0.13
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (23 bp):
AGTTTTAACTACAAATCACTGAA
Found at i:76738796 original size:28 final size:28
Alignment explanation
Indices: 76738759--76738822 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
76738749 AATGAAATTA
76738759 AAAATATAAATA-TAATAAACCTAAAAAGT
1 AAAATATAAATAGTAAT-AACCTAAAAA-T
* *
76738788 AAAAT-TAAATAGTAATGACTTAAAAAT
1 AAAATATAAATAGTAATAACCTAAAAAT
76738815 AAAATATA
1 AAAATATA
76738823 TCAAATGACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 6 0.19
28 16 0.52
29 9 0.29
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.27
Consensus pattern (28 bp):
AAAATATAAATAGTAATAACCTAAAAAT
Found at i:76739177 original size:31 final size:31
Alignment explanation
Indices: 76739130--76739190 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
76739120 TTAGTGTAAT
* *
76739130 TATATATATGAAATTTTGATTGTGATTCAAA
1 TATATACATGAAATTTTAATTGTGATTCAAA
* *
76739161 TATATACATGATATTTTAATTTTGATTCAA
1 TATATACATGAAATTTTAATTGTGATTCAA
76739191 TCATACACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.48
Consensus pattern (31 bp):
TATATACATGAAATTTTAATTGTGATTCAAA
Found at i:76739262 original size:26 final size:25
Alignment explanation
Indices: 76739226--76739278 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
76739216 CATCGATTTA
76739226 TTTTTATATTGGATAAATATAATTAT
1 TTTTTATATTGGATAAATA-AATTAT
*
76739252 TTTTTATATTGGATAGATAAATTAT
1 TTTTTATATTGGATAAATAAATTAT
76739277 TT
1 TT
76739279 CTATTTTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (25 bp):
TTTTTATATTGGATAAATAAATTAT
Found at i:76740849 original size:21 final size:20
Alignment explanation
Indices: 76740820--76740882 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
76740810 CCTAGACATG
76740820 ATTT-TTAAATAATTATAAAA
1 ATTTATTAAA-AATTATAAAA
*
76740840 ATATTA-TAAAATATTATTTAAA
1 AT-TTATTAAAA-ATTA-TAAAA
*
76740862 ATTTATTAAAACTTATAAAA
1 ATTTATTAAAAATTATAAAA
76740882 A
1 A
76740883 AATAATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
20 8 0.23
21 16 0.46
22 11 0.31
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
ATTTATTAAAAATTATAAAA
Found at i:76742477 original size:31 final size:31
Alignment explanation
Indices: 76742435--76742510 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
76742425 TCGTTGCCAA
*
76742435 GCAACCTGGGGTGGC-AGATCATCACTACCGT
1 GCAACCCGGGGTGGCGAG-TCATCACTACCGT
*
76742466 GCAACCCGGGGTGGCGAGTCATCACTGCCGT
1 GCAACCCGGGGTGGCGAGTCATCACTACCGT
* *
76742497 GCAACTCAGGGTGG
1 GCAACCCGGGGTGG
76742511 TTGGCCATCG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 38 0.95
32 2 0.05
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.17
Consensus pattern (31 bp):
GCAACCCGGGGTGGCGAGTCATCACTACCGT
Found at i:76745240 original size:19 final size:19
Alignment explanation
Indices: 76745216--76745256 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
76745206 GACATAGCAT
*
76745216 ATAATGGTACATGGTTATA
1 ATAATGGTACATGGTCATA
76745235 ATAATGGTACATGGTCATA
1 ATAATGGTACATGGTCATA
76745254 ATA
1 ATA
76745257 TGGCCTAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (19 bp):
ATAATGGTACATGGTCATA
Found at i:76757473 original size:42 final size:42
Alignment explanation
Indices: 76757414--76757553 Score: 194
Period size: 42 Copynumber: 3.3 Consensus size: 42
76757404 ACTAAGACTA
76757414 TGTGTAAGACCATATTTGGAATATGGCATCTATATGAAACTT
1 TGTGTAAGACCATATTTGGAATATGGCATCTATATGAAACTT
76757456 TGTGTAAGACCATATTTGGAATATGGCATCTATATGAAACTT
1 TGTGTAAGACCATATTTGGAATATGGCATCTATATGAAACTT
* * * * *
76757498 TGTGTAAAACCATATCT-AAGATATGGCAT-TGAGATGAGACTT
1 TGTGTAAGACCATATTTGGA-ATATGGCATCT-ATATGAAACTT
*
76757540 CGTGTAAGACCATA
1 TGTGTAAGACCATA
76757554 GCCAGGCTAT
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
41 2 0.02
42 87 0.98
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (42 bp):
TGTGTAAGACCATATTTGGAATATGGCATCTATATGAAACTT
Found at i:76767992 original size:42 final size:42
Alignment explanation
Indices: 76767941--76768094 Score: 202
Period size: 42 Copynumber: 3.6 Consensus size: 42
76767931 TAAGACTATG
**
76767941 TGTAAGACCATATCTGGGATATGGCATTTATATGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCA
* * *
76767983 TGTAAGACCATATCTAGGATATGGAATCGACATGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCA
* * * *
76768025 TGTAATACCATAACTGGGCTATTGGCATCGATACGAGA-TTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACTT-CA
76768068 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
76768095 TGGTATGGTA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCA
Found at i:76772214 original size:27 final size:28
Alignment explanation
Indices: 76772173--76772236 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
76772163 CAGACTGCCT
*
76772173 TGTGTTTA-TTGTCTC-AAAGGACTACCC
1 TGTGTTTACTTGTCTCGAAA-GAATACCC
*
76772200 TGTGTTTACTT-TCTCGATAGAATACCC
1 TGTGTTTACTTGTCTCGAAAGAATACCC
76772227 TGTGTTTACT
1 TGTGTTTACT
76772237 ATCCAGTAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.42
Consensus pattern (28 bp):
TGTGTTTACTTGTCTCGAAAGAATACCC
Found at i:76787062 original size:13 final size:13
Alignment explanation
Indices: 76787044--76787073 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
76787034 CACACGCCTG
76787044 TGTGTCTAGCCCA
1 TGTGTCTAGCCCA
*
76787057 TGTGTCTAGCCCT
1 TGTGTCTAGCCCA
76787070 TGTG
1 TGTG
76787074 CCCTTCGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.27, G:0.27, T:0.37
Consensus pattern (13 bp):
TGTGTCTAGCCCA
Found at i:76790354 original size:93 final size:93
Alignment explanation
Indices: 76790245--76790509 Score: 478
Period size: 93 Copynumber: 2.8 Consensus size: 93
76790235 CGCCCATAAG
* *
76790245 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
76790309 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
76790338 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76790403 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
76790431 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76790496 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
76790510 TCAACCATCC
Statistics
Matches: 165, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
92 2 0.01
93 163 0.99
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:76790504 original size:46 final size:46
Alignment explanation
Indices: 76790238--76790506 Score: 286
Period size: 46 Copynumber: 5.8 Consensus size: 46
76790228 TGTAACCCGC
* * *
76790238 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCACAT
*
76790284 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* *
76790334 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
76790377 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* *
76790427 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
76790470 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
76790507 TGCTCAACCA
Statistics
Matches: 189, Mismatches: 15, Indels: 38
0.78 0.06 0.16
Matches are distributed among these distances:
42 4 0.02
43 9 0.05
44 4 0.02
45 6 0.03
46 89 0.47
47 57 0.30
48 4 0.02
49 4 0.02
50 8 0.04
51 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:76793974 original size:58 final size:58
Alignment explanation
Indices: 76793899--76794021 Score: 185
Period size: 58 Copynumber: 2.1 Consensus size: 58
76793889 ACAATTGAGC
*
76793899 TACTCACGGGACTTTCTATCAAGTCAGGACC-CATACCCCATAGTTATCATGTAACATT
1 TACTCATGGGACTTTCTATCAAGTCAGGACCTC-TACCCCATAGTTATCATGTAACATT
* * *
76793957 TACTCATGGGCCTTTCTATCAAGTTAGGACCTCTACCCGATAGTTATCATGTAACATT
1 TACTCATGGGACTTTCTATCAAGTCAGGACCTCTACCCCATAGTTATCATGTAACATT
*
76794015 TGCTCAT
1 TACTCAT
76794022 TGAGCCACTC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
58 58 0.98
59 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.33
Consensus pattern (58 bp):
TACTCATGGGACTTTCTATCAAGTCAGGACCTCTACCCCATAGTTATCATGTAACATT
Found at i:76797543 original size:47 final size:47
Alignment explanation
Indices: 76797489--76797682 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
76797479 TTAGGATTTT
** * *
76797489 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
76797536 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
76797583 ATGCGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
76797630 AAGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
76797677 ATGTGA
1 ATGTGA
76797683 AATATGTATG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:76797943 original size:37 final size:37
Alignment explanation
Indices: 76797889--76798033 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
76797879 GGAAATATAT
*
76797889 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
76797926 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
76797963 TCCGGGTAAGACCCGATGAATACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
76798000 TCCAGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
76798034 TCGTCTGAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:76811091 original size:40 final size:39
Alignment explanation
Indices: 76811032--76811109 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
76811022 GACTTATCGG
*
76811032 CTAAAATGGCACTTAGTGTGCAGTTCGAAATAGCTTCGA
1 CTAAAATGGCACTTAGTGTGCAATTCGAAATAGCTTCGA
* * *
76811071 CTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCTTCG
1 CTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCTTCG
76811110 GCTATATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 6 0.18
40 28 0.82
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (39 bp):
CTAAAATGGCACTTAGTGTGCAATTCGAAATAGCTTCGA
Found at i:76814072 original size:48 final size:48
Alignment explanation
Indices: 76813963--76814096 Score: 198
Period size: 48 Copynumber: 2.8 Consensus size: 48
76813953 GTTACATGTT
* *
76813963 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *
76814010 TAACCATGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
76814058 TAATCTTGGTATATCCACTTAGCACCACGTTACAGGTAT
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTAT
76814097 AACCGTGGTA
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 30 0.38
48 48 0.62
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (48 bp):
TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:76817296 original size:43 final size:43
Alignment explanation
Indices: 76817237--76817345 Score: 130
Period size: 43 Copynumber: 2.5 Consensus size: 43
76817227 ATCGACTCGG
* * *
76817237 TATGTGATTACATGTAAGACCATGTATGGGACATTGGCATTG-
1 TATGTGATTACATGTAAGACCATGTATAGGACAGTGGCATCGA
* * * *
76817279 TATTGTGATTTCGTGTAAGACCCTGTGTAGGACAGTGGCATCGA
1 TA-TGTGATTACATGTAAGACCATGTATAGGACAGTGGCATCGA
*
76817323 TATGTGATAACATGTAAGACCAT
1 TATGTGATTACATGTAAGACCAT
76817346 ATCTAGGATA
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
42 2 0.04
43 50 0.93
44 2 0.04
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
TATGTGATTACATGTAAGACCATGTATAGGACAGTGGCATCGA
Found at i:76817353 original size:43 final size:41
Alignment explanation
Indices: 76817236--76817367 Score: 129
Period size: 43 Copynumber: 3.1 Consensus size: 41
76817226 CATCGACTCG
* *
76817236 GTATGTGATTACATGTAAGACCATGTATGGGACATTGGCATT
1 GTATGTGATTACATGTAAGACCATGTATAGGACA-TGGCATC
* * * *
76817278 GTATTGTGATTTCGTGTAAGACCCTGTGTAGGACAGTGGCATC
1 GTA-TGTGATTACATGTAAGACCATGTATAGGACA-TGGCATC
* * * * *
76817321 GATATGTGATAACATGTAAGACCATATCTAGGATATGGCATT
1 G-TATGTGATTACATGTAAGACCATGTATAGGACATGGCATC
76817363 GTATG
1 GTATG
76817368 ATCTATATGT
Statistics
Matches: 73, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
41 4 0.05
42 10 0.14
43 57 0.78
44 2 0.03
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (41 bp):
GTATGTGATTACATGTAAGACCATGTATAGGACATGGCATC
Found at i:76819374 original size:30 final size:30
Alignment explanation
Indices: 76819334--76819394 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
76819324 AGTATATAGA
*
76819334 TAGACAGATAGTTGGAATAAAGAAGCTATG
1 TAGACAGATAGTTGGAATAAAGAAACTATG
*
76819364 TAGACGGATAGTTGGAATAAAGAAACTATG
1 TAGACAGATAGTTGGAATAAAGAAACTATG
76819394 T
1 T
76819395 TCTCGAGAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.26, T:0.25
Consensus pattern (30 bp):
TAGACAGATAGTTGGAATAAAGAAACTATG
Found at i:76821432 original size:28 final size:28
Alignment explanation
Indices: 76821392--76821471 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
76821382 TATATATATG
*
76821392 GCACTTAGTGTGCAAAGTATCGAGGATA
1 GCACTTAGTGTGCAAAGTATCGAGAATA
*
76821420 GCACTTAGTGTGCGAAA-CATTC-AGAATA
1 GCACTTAGTGTGC-AAAGTA-TCGAGAATA
* * *
76821448 GCACTTAGCGTGCGAGGTATCGAG
1 GCACTTAGTGTGCAAAGTATCGAG
76821472 TATGGTACAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
27 3 0.07
28 34 0.81
29 5 0.12
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (28 bp):
GCACTTAGTGTGCAAAGTATCGAGAATA
Found at i:76822576 original size:46 final size:46
Alignment explanation
Indices: 76822509--76822601 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
76822499 GCATGTATAG
*
76822509 GGGCTTTATCTTTTGTAATTATGTCATTA-CAATTGTGGCCAAATGT
1 GGGCTTTATCTTTTGTAATTATGCCATTATCAA-TGTGGCCAAATGT
*
76822555 GGGCTTTATCTTTTGTAATTATGCCATTATTAATGTGGCCAAATGT
1 GGGCTTTATCTTTTGTAATTATGCCATTATCAATGTGGCCAAATGT
76822601 G
1 G
76822602 TTGGCCTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 42 0.95
47 2 0.05
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (46 bp):
GGGCTTTATCTTTTGTAATTATGCCATTATCAATGTGGCCAAATGT
Found at i:76829152 original size:93 final size:93
Alignment explanation
Indices: 76828993--76829163 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
76828983 GCCCCTAAGT
* * * *
76828993 GAACTCAGACTCAACTTAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
76829058 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
76829086 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
76829151 CGAGTTCGGATGC
66 CGAGTTCGGATGC
76829164 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:76829153 original size:46 final size:45
Alignment explanation
Indices: 76828990--76829160 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
76828980 CCCGCCCCTA
* * * * *
76828990 AGTGAACTCAGACTCAACTTAATGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
*
76829035 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
* *
76829083 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
*
76829128 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCAGACTCAACTCAACGAGTTCGGA
76829161 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 57 0.55
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:76829617 original size:30 final size:30
Alignment explanation
Indices: 76829583--76829642 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
76829573 ATTTAATACG
76829583 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
76829613 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
76829643 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:76829897 original size:20 final size:20
Alignment explanation
Indices: 76829872--76829912 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
76829862 CACAAATTTC
76829872 ACCTATGGGTATTTTTCCAA
1 ACCTATGGGTATTTTTCCAA
76829892 ACCTATGGGTATTTTTCCAA
1 ACCTATGGGTATTTTTCCAA
76829912 A
1 A
76829913 TATAAACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (20 bp):
ACCTATGGGTATTTTTCCAA
Found at i:76848688 original size:49 final size:48
Alignment explanation
Indices: 76848526--76848707 Score: 184
Period size: 49 Copynumber: 3.7 Consensus size: 48
76848516 TCTATTGCGA
* * * *
76848526 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATAA-T-T
* * * * **
76848577 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATT
* *
76848625 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATAATT
* * *
76848675 GGTCGCATTTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
76848708 TGCGTACCAG
Statistics
Matches: 109, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.01
49 68 0.62
50 5 0.05
51 35 0.32
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (48 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATT
Found at i:76851217 original size:26 final size:26
Alignment explanation
Indices: 76851155--76851223 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
76851145 ATGGTCTTCC
* *
76851155 AACCAACTCAAACTTAAGGGTCCTTG
1 AACCAACTCAAACTCAAGGGACCTTG
* * *
76851181 GACCCATTCAAACTCAAGGGACCTCT-
1 AACCAACTCAAACTCAAGGGACCT-TG
*
76851207 AACCAACTCAAAGTCAA
1 AACCAACTCAAACTCAA
76851224 AGGTCCTCAG
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
26 32 0.97
27 1 0.03
ACGTcount: A:0.38, C:0.30, G:0.13, T:0.19
Consensus pattern (26 bp):
AACCAACTCAAACTCAAGGGACCTTG
Found at i:76852802 original size:29 final size:29
Alignment explanation
Indices: 76852770--76852829 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
76852760 ATACTTTCAA
** *
76852770 TTGTAACTATTTGATTTTTAAAGTTACAT
1 TTGTAACTATTAAATTTTTAAAGTTAAAT
* *
76852799 TTGTAATTATTAAATTTTTACAGTTAAAT
1 TTGTAACTATTAAATTTTTAAAGTTAAAT
76852828 TT
1 TT
76852830 ATGGAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.53
Consensus pattern (29 bp):
TTGTAACTATTAAATTTTTAAAGTTAAAT
Found at i:76858712 original size:35 final size:35
Alignment explanation
Indices: 76858641--76858712 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
76858631 TTTATTTTAA
* **
76858641 TTTACTTTTTTATAATTTTATAAATTTTAATATTT
1 TTTACTTTTTTATAATTTTAAAAATAATAATATTT
*
76858676 TTTACATTTTTTATAA-TTTAAAAATAAT-ATTTTT
1 TTTAC-TTTTTTATAATTTTAAAAATAATAATATTT
76858710 TTT
1 TTT
76858713 CGAAAAAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 8 0.25
35 14 0.44
36 10 0.31
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (35 bp):
TTTACTTTTTTATAATTTTAAAAATAATAATATTT
Found at i:76859983 original size:46 final size:46
Alignment explanation
Indices: 76859931--76860046 Score: 214
Period size: 46 Copynumber: 2.5 Consensus size: 46
76859921 GATATTTGGG
76859931 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
76859977 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* *
76860023 CGTCCGAACTCATTGAGTTGAGTC
1 CATCCGAACTCGTTGAGTTGAGTC
76860047 TGGATTTGTG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:76865429 original size:46 final size:46
Alignment explanation
Indices: 76865377--76865492 Score: 223
Period size: 46 Copynumber: 2.5 Consensus size: 46
76865367 GATATTTGGG
76865377 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
76865423 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*
76865469 CGTCCGAACTCGTTGAGTTGAGTC
1 CATCCGAACTCGTTGAGTTGAGTC
76865493 TGGATTTGTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:76869962 original size:69 final size:69
Alignment explanation
Indices: 76869887--76870157 Score: 269
Period size: 69 Copynumber: 3.9 Consensus size: 69
76869877 TCTTCGTTTG
* * * * * * *
76869887 TGAGCCTTAATCTTACAGTTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGTTGC-AGCTTTTT
1 TGAGCCTTGATCTTACAGTTGGGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGA-CTCTTC
76869951 G-CT-
65 GCCTA
* *
76869954 TGCAAGCCTTGATCTTACAATTGAGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTCTT
1 TG--AGCCTTGATCTTACAGTTGGGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTCTT
76870019 CGCCTA
64 CGCCTA
* * * * * **
76870025 TGAGCCTTGGTCTTACAGTTGGGAGCTTTGCTCTTGCTAACTTTTTTGGAGGCTACAACTCTTAA
1 TGAGCCTTGATCTTACAGTTGGGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTCTTCG
*
76870090 ACTA
66 CCTA
* * * * * * * *
76870094 TGAGCCTTGATATTATAGCTGGGAGTTTTGCTCTTGCTAACTTTTTTGGAGGCTATGACTCTTC
1 TGAGCCTTGATCTTACAGTTGGGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTCTTC
76870158 ACTTGCGAGC
Statistics
Matches: 172, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
67 2 0.01
69 165 0.96
70 3 0.02
71 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (69 bp):
TGAGCCTTGATCTTACAGTTGGGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTCTTCG
CCTA
Found at i:76870100 original size:138 final size:137
Alignment explanation
Indices: 76869887--76870157 Score: 310
Period size: 138 Copynumber: 2.0 Consensus size: 137
76869877 TCTTCGTTTG
* * * ***
76869887 TGAGCCTTAATCTTACAGTTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGTTGCAGCTTTTTG
1 TGAGCCTTAATCTTACAGTTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTACAACTTTAAA
* *
76869952 CTTGCAAGCCTTGATCTTACAATTGAGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTC
66 CTTG-AAGCCTTGATATTACAACTGAGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTC
76870017 TTCGCCTA
130 TTCGCCTA
** * * * *
76870025 TGAGCCTTGGTCTTACAGTTGGGAGCTTTGCTCTTGCTAACTTTTTTGGAGGCTACAACTCTTAA
1 TGAGCCTTAATCTTACAGTTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTACAACT-TTAA
* * * * * * * *
76870090 ACTATG-AGCCTTGATATTATAGCTGGGAGTTTTGCTCTTGCTAACTTTTTTGGAGGCTATGACT
65 ACT-TGAAGCCTTGATATTACAACTGAGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACT
76870154 CTTC
129 CTTC
76870158 ACTTGCGAGC
Statistics
Matches: 109, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
138 103 0.94
139 4 0.04
140 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (137 bp):
TGAGCCTTAATCTTACAGTTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTACAACTTTAAA
CTTGAAGCCTTGATATTACAACTGAGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTCT
TCGCCTA
Found at i:76870193 original size:69 final size:69
Alignment explanation
Indices: 76869952--76870196 Score: 260
Period size: 69 Copynumber: 3.6 Consensus size: 69
76869942 CAGCTTTTTG
* * * * *
76869952 CTTGCAAGCCTTGATCTTACAATTGAGAGCTTTACTCTCGCTAACTATTTTGGAGGCTACGACTC
1 CTTGCGAGCCTTGATATTACAATTGAGAGCTTTGCTCTTGCTAACTTTTTTGGAGGCTACGACTC
*
76870017 TTCG
66 TTCA
* ** * * * * *
76870021 CCTATGAGCCTTGGTCTTACAGTTGGGAGCTTTGCTCTTGCTAACTTTTTTGGAGGCTACAACTC
1 CTTGCGAGCCTTGATATTACAATTGAGAGCTTTGCTCTTGCTAACTTTTTTGGAGGCTACGACTC
*
76870086 TTAAA
66 TT-CA
* ** * * *
76870091 CTAT--GAGCCTTGATATTATAGCTGGGAGTTTTGCTCTTGCTAACTTTTTTGGAGGCTATGACT
1 CT-TGCGAGCCTTGATATTACAATTGAGAGCTTTGCTCTTGCTAACTTTTTTGGAGGCTACGACT
76870154 CTTCA
65 CTTCA
*
76870159 CTTGCGAGCCTTGATATTACAATTGAAAGCTTTGCTCT
1 CTTGCGAGCCTTGATATTACAATTGAGAGCTTTGCTCT
76870197 CCTACAAGCC
Statistics
Matches: 144, Mismatches: 28, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
67 1 0.01
68 3 0.02
69 138 0.96
70 1 0.01
71 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (69 bp):
CTTGCGAGCCTTGATATTACAATTGAGAGCTTTGCTCTTGCTAACTTTTTTGGAGGCTACGACTC
TTCA
Found at i:76873592 original size:39 final size:40
Alignment explanation
Indices: 76873533--76873752 Score: 184
Period size: 40 Copynumber: 5.5 Consensus size: 40
76873523 CTCGTTCAAG
* * * **
76873533 TGCCTTCGAGACATAGCCCGGTTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAA
* *
76873572 TGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCACAAA
* *
76873612 TGCCTTCGGGACTTAACCCGG-AATTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGTTA-TAGTAACTCGCACAAA
*
76873652 GGCCTTCGGGACTTAACCCGGAATTA-A-TAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG--TTATAGTAACTCGCACAAA
* ** * * *
76873692 TGCATTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAACCCGGTTATAGTAAC-TCGCACAAA
*
76873733 -GCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGACTTAACCCGG
76873753 ACAGCATTCA
Statistics
Matches: 146, Mismatches: 23, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
38 2 0.01
39 31 0.21
40 100 0.68
41 12 0.08
43 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAA
Found at i:76873673 original size:80 final size:80
Alignment explanation
Indices: 76873568--76873753 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
76873558 AGTAACTCAT
* * *
76873568 ACAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 ACAAAGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCATTC-GGATCTTAACCC
*
76873631 GGA-ATTAGT-A-TCTCGC
64 GGATA-TAGTCACT-TAGC
**
76873647 ACAAAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCATTCGGATCTTAGTCCG
1 ACAAA-GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCATTCGGATCTTAACCCG
76873712 GATATAGTCACTTAGC
65 GATATAGTCACTTAGC
*
76873728 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
76873754 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCATTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:76873713 original size:40 final size:40
Alignment explanation
Indices: 76873570--76873753 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
76873560 TAACTCATAC
*
76873570 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
76873610 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
76873650 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
76873690 AATGCATTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
76873731 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76873754 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 8 0.07
40 104 0.85
41 11 0.09
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:76881530 original size:39 final size:40
Alignment explanation
Indices: 76881487--76881654 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
76881477 CTCGTTGAAG
* * * *
76881487 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* * *
76881526 TGCCTTTGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
76881566 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
76881606 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
76881646 TGCCTTCGG
1 TGCCTTCGG
76881655 ATCTTAGTCC
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
39 25 0.23
40 80 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:76881667 original size:40 final size:40
Alignment explanation
Indices: 76881524--76881654 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
76881514 TAACTCATAC
* * *
76881524 AATGCCTTTGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
76881564 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
76881604 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
76881644 AATGCCTTCGG
1 AATGCCTTCGG
76881655 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.04
40 78 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:76887461 original size:25 final size:26
Alignment explanation
Indices: 76887405--76887461 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
76887395 TTTAATTAAA
* * *
76887405 TAAAAATTATTAATGATTCAATAAACT
1 TAAAAATTA-TAATAATTAAATAAAAT
*
76887432 AAAAAATTA-AATAATTAAATAAAAT
1 TAAAAATTATAATAATTAAATAAAAT
76887457 TAAAA
1 TAAAA
76887462 TTTAGGAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 17 0.68
27 8 0.32
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.32
Consensus pattern (26 bp):
TAAAAATTATAATAATTAAATAAAAT
Found at i:76888316 original size:22 final size:20
Alignment explanation
Indices: 76888277--76888323 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
76888267 TATAAAGTTG
76888277 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
76888296 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
76888319 ATAAT
1 ATAAT
76888324 TATCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:76891707 original size:42 final size:42
Alignment explanation
Indices: 76891660--76891744 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
76891650 AAAACGGGAT
* *
76891660 TGCGGATTAAATCTCTTTTGTTTAGCTTCTAACAACGCTAAG
1 TGCGGATTAAATCCCTTTTGATTAGCTTCTAACAACGCTAAG
76891702 TGCGGATTAAATCCCTTTTGATTAGCTTCTAACAACGCTAAG
1 TGCGGATTAAATCCCTTTTGATTAGCTTCTAACAACGCTAAG
76891744 T
1 T
76891745 ATTCATCCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.36
Consensus pattern (42 bp):
TGCGGATTAAATCCCTTTTGATTAGCTTCTAACAACGCTAAG
Found at i:76895990 original size:27 final size:27
Alignment explanation
Indices: 76895960--76896137 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76895950 ATATTGAGTC
* * * *
76895960 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
76895987 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76896014 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76896042 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76896069 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76896096 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76896123 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76896138 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76896099 original size:82 final size:81
Alignment explanation
Indices: 76895981--76896136 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76895971 TGCTATATAA
* *
76895981 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76896046 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76896063 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76896127 CACTTAGTGC
65 CACTTAGTGC
76896137 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76903017 original size:27 final size:27
Alignment explanation
Indices: 76902987--76903164 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76902977 ATATTGAGTC
* * * *
76902987 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
76903014 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76903041 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76903069 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76903096 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76903123 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76903150 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76903165 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76903126 original size:82 final size:81
Alignment explanation
Indices: 76903008--76903163 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76902998 TGCTATATAA
* *
76903008 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76903073 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76903090 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76903154 CACTTAGTGC
65 CACTTAGTGC
76903164 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76905840 original size:46 final size:47
Alignment explanation
Indices: 76905741--76905857 Score: 148
Period size: 46 Copynumber: 2.5 Consensus size: 47
76905731 TTTGTGTGCT
* * * *
76905741 AGTGTAAGACCATGTTTGGGACATGACATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGACATCGGCATCGAGACGAAAGCC
* *
76905789 AGTGTAAGACATGTCTGGGACATG-CATCGGCCTCGAGA-TATAAGCC
1 AGTGTAAGACATGTCTGGGACATGACATCGGCATCGAGACGA-AAGCC
76905835 AGTGTAAGACATGTCTGGGACAT
1 AGTGTAAGACATGTCTGGGACAT
76905858 CATTGGTTAC
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
45 1 0.02
46 38 0.61
47 14 0.23
48 9 0.15
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGACATCGGCATCGAGACGAAAGCC
Found at i:76919918 original size:45 final size:45
Alignment explanation
Indices: 76919854--76919943 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
76919844 AATTTGCAAA
76919854 ACTGTTACAGATTTATAGTTGTACCATGAATGCTCTTCTGTGATT
1 ACTGTTACAGATTTATAGTTGTACCATGAATGCTCTTCTGTGATT
76919899 ACTGTTACAGATTTATAGTTGTACCATGAATGCTCTTCTGTGATT
1 ACTGTTACAGATTTATAGTTGTACCATGAATGCTCTTCTGTGATT
76919944 CTTCATGTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (45 bp):
ACTGTTACAGATTTATAGTTGTACCATGAATGCTCTTCTGTGATT
Found at i:76921700 original size:46 final size:48
Alignment explanation
Indices: 76921628--76921730 Score: 120
Period size: 46 Copynumber: 2.2 Consensus size: 48
76921618 GACAGGACAG
* * * *
76921628 GACAGAAATGAGCCATATAAGTCCATATCA-GT-TATATGGCTTTAGA
1 GACAGGAATGAGCCATATAAGCCCATATCATATATATATGGCATTAGA
* * * *
76921674 GACAGGAATGAGCCGTGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATATAAGCCCATATCATATATATATGGCATTAGA
76921722 GACAGGAAT
1 GACAGGAAT
76921731 AATTCATGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 25 0.53
47 1 0.02
48 21 0.45
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATATAAGCCCATATCATATATATATGGCATTAGA
Found at i:76923195 original size:82 final size:80
Alignment explanation
Indices: 76923063--76923220 Score: 221
Period size: 82 Copynumber: 1.9 Consensus size: 80
76923053 TATACATACG
*
76923063 TGCCCTTGTTCGTACTTCGATACCCCTGAATTGCACATCTGTGCCACTGTTTGTACTTCAGTACC
1 TGCCCTTGTTCGTACTTCGATACCCCTGAATTGCACATATGTGCCACTGTTTGTACTTCAGTACC
76923128 CATGAATTGCACATAA
66 CATGAA-TGCACATAA
* **
76923144 TGCCCTTGTTTGTACTTC-ATCACCCCCTGAATTGCACATATGTGTCC-CTGTTTGTACTTTGGT
1 TGCCCTTGTTCGTACTTCGAT-A-CCCCTGAATTGCACATATGTG-CCACTGTTTGTACTTCAGT
*
76923207 ACCCTTGAATGCAC
63 ACCCATGAATGCAC
76923221 TTTTGTACCC
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
80 2 0.03
81 23 0.33
82 42 0.61
83 2 0.03
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.35
Consensus pattern (80 bp):
TGCCCTTGTTCGTACTTCGATACCCCTGAATTGCACATATGTGCCACTGTTTGTACTTCAGTACC
CATGAATGCACATAA
Found at i:76923216 original size:41 final size:40
Alignment explanation
Indices: 76923056--76923246 Score: 156
Period size: 41 Copynumber: 4.7 Consensus size: 40
76923046 GTTGAACTAT
* * * *
76923056 ACATACGTGCCCTTGTTCGTACTTCGATACCCCTGAATTGC
1 ACATATGTGCCC-TGTTTGTACTTTGGTACCCCTGAATTGC
* ** *
76923097 ACATCTGTGCCACTGTTTGTACTTCAGTACCCATGAATTGC
1 ACATATGTGCC-CTGTTTGTACTTTGGTACCCCTGAATTGC
* **
76923138 ACATA-ATGCCCTTGTTTGTAC-TTCATCACCCCCTGAATTGC
1 ACATATGTGCCC-TGTTTGTACTTTGGT-A-CCCCTGAATTGC
*
76923179 ACATATGTGTCCCTGTTTGTACTTTGGTACCCTTGAA-TGC
1 ACATATGTG-CCCTGTTTGTACTTTGGTACCCCTGAATTGC
* * *
76923219 ACTTTTGTACCCTGTTTAG-ACTTTGGTA
1 ACATATGTGCCCTGTTT-GTACTTTGGTA
76923247 ATTCTGAGTC
Statistics
Matches: 123, Mismatches: 19, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
39 20 0.16
40 24 0.20
41 60 0.49
42 13 0.11
43 6 0.05
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.37
Consensus pattern (40 bp):
ACATATGTGCCCTGTTTGTACTTTGGTACCCCTGAATTGC
Found at i:76926468 original size:17 final size:17
Alignment explanation
Indices: 76926448--76926483 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
76926438 TTCTTGAACG
76926448 ATGAATGAACTCTTTGA
1 ATGAATGAACTCTTTGA
76926465 ATGAATGAACTCTTTGA
1 ATGAATGAACTCTTTGA
76926482 AT
1 AT
76926484 TGGAGTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (17 bp):
ATGAATGAACTCTTTGA
Found at i:76930554 original size:27 final size:27
Alignment explanation
Indices: 76930524--76930722 Score: 222
Period size: 27 Copynumber: 7.4 Consensus size: 27
76930514 TACTAAAATG
** *
76930524 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** * *
76930551 CCCTCGATTTATGGAATTACTGTTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
76930578 CCCTCGAATTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
76930605 CCCTCGATTTATAGAATTACCAG-TTTA
1 CCCTCGATTTACAGAATTACC-GTTTTA
76930632 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * * *
76930659 TCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
76930686 CCTTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
76930713 CCCTCGATTT
1 CCCTCGATTT
76930723 TGAAATTACT
Statistics
Matches: 145, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.01
27 141 0.97
28 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:76930620 original size:81 final size:81
Alignment explanation
Indices: 76930524--76930732 Score: 262
Period size: 81 Copynumber: 2.6 Consensus size: 81
76930514 TACTAAAATG
*
76930524 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATGGAATTACTGTTTCACCCTCGAA-TT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATGGAATTACTGTTTCACCCTC-AATTT
*
76930588 ACAAAATTACCGTTTTA
65 ACAAAATTACCATTTTA
* ** * * *
76930605 CCCTCGATTTATAGAATTACCAGTTTACCCTCGATTTACAGAATTACCGTTTTATCCTCAATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATGGAATTACTGTTTCACCCTCAATTTA
76930670 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * * * *
76930686 CCTTC-AGTTTACAAAATTACCGTTTTACCCTCGATTT-TGAAATTACT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATTTATGGAATTACT
76930733 AAAATACCCC
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
80 9 0.08
81 100 0.92
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATGGAATTACTGTTTCACCCTCAATTTA
CAAAATTACCATTTTA
Found at i:76930917 original size:81 final size:81
Alignment explanation
Indices: 76930753--76930920 Score: 248
Period size: 81 Copynumber: 2.1 Consensus size: 81
76930743 TGTAGGATAG
*
76930753 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
* **
76930818 CACCCCTAGTTTGTAA
66 CACCCCTAATTTACAA
* *
76930834 AATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAGTA-CCCTCAATTTGTAAAATTACCAAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AATTTGTAAAATTACCAAA
* *
76930898 ATACCCTTAATTTACAA
65 ACACCCCTAATTTACAA
76930915 AATTAC
1 AATTAC
76930921 AGAAAAACCC
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 4 0.05
81 74 0.95
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
CACCCCTAATTTACAA
Found at i:76930920 original size:27 final size:27
Alignment explanation
Indices: 76930725--76930903 Score: 254
Period size: 27 Copynumber: 6.6 Consensus size: 27
76930715 CTCGATTTTG
* **
76930725 AAATTACTAAAATACCCCT-GTAGGATA
1 AAATTACCAAAATACCCCTAGTTTG-TA
*
76930752 GAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
76930779 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
76930806 AAATTACCAAAACACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
76930833 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
76930860 AAATTACCGAAGTA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTA
76930887 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
76930904 TTAATTTACA
Statistics
Matches: 137, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
26 4 0.03
27 128 0.93
28 5 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:76930930 original size:27 final size:27
Alignment explanation
Indices: 76930832--76930988 Score: 104
Period size: 27 Copynumber: 5.7 Consensus size: 27
76930822 CCTAGTTTGT
* * **
76930832 AAAATTACCA-AAATACCCCTAGTTTGT
1 AAAATTA-CAGAAATACCCTTAATTTAC
* * * **
76930859 AAAATTACCGAAGTACCCTCAATTTGT
1 AAAATTACAGAAATACCCTTAATTTAC
76930886 AAAATTACCA-AAATACCCTTAATTTAC
1 AAAATTA-CAGAAATACCCTTAATTTAC
* *
76930913 AAAATTACAGAAAAACCCTTGACTTT-C
1 AAAATTACAGAAATACCCTT-AATTTAC
* * **
76930940 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACAGAAATACCCTTAATTTAC
*
76930969 AAAATTACTGAAATACCCTT
1 AAAATTACAGAAATACCCTT
76930989 GTTTTGTAGA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
26 3 0.03
27 74 0.72
28 8 0.08
29 18 0.17
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTAATTTAC
Found at i:76930931 original size:54 final size:55
Alignment explanation
Indices: 76930725--76930931 Score: 210
Period size: 54 Copynumber: 3.8 Consensus size: 55
76930715 CTCGATTTTG
* ** * * *
76930725 AAATTACTAAAATACCCCT-GTAGGATAGAATTACCA-AAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTG-TAAAATTA-CAGAAAAACCCTCTAATTTGTA
* *
76930779 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCA-AAACACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTA-CAGAAAAACCCTCTAATTTGTA
* **
76930833 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAGTACCCTC-AATTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACAGAAAAACCCTCTAATTTGTA
* * **
76930887 AAATTACCAAAATACCCTTAATTTACAAAATTACAGAAAAACCCT
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACAGAAAAACCCT
76930932 TGACTTTCTA
Statistics
Matches: 134, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.01
54 129 0.96
55 4 0.03
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.28
Consensus pattern (55 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACAGAAAAACCCTCTAATTTGTA
Found at i:76931088 original size:27 final size:27
Alignment explanation
Indices: 76931034--76931111 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
76931024 AAATGACTAA
* * *
76931034 AATACCCCTAATA-GGTAAAAAGATCGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
*
76931061 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
* *
76931088 AATACCCTTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
76931112 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:76931843 original size:20 final size:20
Alignment explanation
Indices: 76931818--76931904 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
76931808 GATATGATAT
*
76931818 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
76931838 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
76931858 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
76931878 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
76931898 ACATGAT
1 ACATGAT
76931905 GTATTCATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:76931983 original size:26 final size:26
Alignment explanation
Indices: 76931954--76932089 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
76931944 GAGGAAGTGC
*
76931954 AAAAAGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
76931980 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76932006 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
76932032 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
76932057 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
76932080 AAAAGAGGCT
1 AAAAG-GGCT
76932090 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.31
26 57 0.57
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:76932032 original size:52 final size:51
Alignment explanation
Indices: 76931954--76932089 Score: 224
Period size: 52 Copynumber: 2.7 Consensus size: 51
76931944 GAGGAAGTGC
*
76931954 AAAAAGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
76932006 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
76932057 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
76932090 AGGCCTCCAG
Statistics
Matches: 82, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 25 0.30
52 35 0.43
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:76932281 original size:42 final size:42
Alignment explanation
Indices: 76932222--76932313 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
76932212 TAGTCTCCCC
* *** *
76932222 AAATGGGCTTGCATACATTCATTGGTTTTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
76932264 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
76932306 AAATGGGC
1 AAATGGGC
76932314 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:76932372 original size:31 final size:31
Alignment explanation
Indices: 76932337--76932415 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
76932327 CGTTTACAGT
76932337 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
76932368 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
76932399 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
76932416 ATATGTCAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:76940501 original size:53 final size:53
Alignment explanation
Indices: 76940318--76940572 Score: 218
Period size: 55 Copynumber: 4.8 Consensus size: 53
76940308 ATTAGGGTTT
* * * * *
76940318 AAGGATACCGTGTAAGACCATGCCAAGGCATGGAAATTGGAAAGGTTTC-TAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * *
76940373 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
76940428 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
76940481 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTGTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGT-TCATAAGGC
* * * * *
76940530 AAGGATACCACGTGAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
76940573 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
49 38 0.23
52 8 0.05
53 43 0.26
54 9 0.05
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:76940524 original size:108 final size:110
Alignment explanation
Indices: 76940328--76940524 Score: 283
Period size: 108 Copynumber: 1.8 Consensus size: 110
76940318 AAGGATACCG
* *
76940328 TGTAAGACCATGCCAAGGCATGGAAATTGGAAAGGTTTCTAAGGTAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGAAATTGGAAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
76940393 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* ** **
76940438 TGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGAAATTGGAAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
76940500 ATGTCAAGACATGGCAATGGTAAGT
65 ATGTCAAGACATGGCAATGATAAGT
76940525 GTCAAAAGGA
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.58
109 6 0.08
110 23 0.30
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGAAATTGGAAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:76940784 original size:16 final size:16
Alignment explanation
Indices: 76940763--76940793 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76940753 ATAAATTTTA
76940763 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
76940779 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
76940794 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:76955595 original size:18 final size:18
Alignment explanation
Indices: 76955572--76955606 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
76955562 AAGGCTAAAC
76955572 AATGGTTGAACTCGTTAT
1 AATGGTTGAACTCGTTAT
76955590 AATGGTTGAACTCGTTA
1 AATGGTTGAACTCGTTA
76955607 CCACGAGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATGGTTGAACTCGTTAT
Found at i:76956441 original size:42 final size:42
Alignment explanation
Indices: 76956364--76956655 Score: 381
Period size: 42 Copynumber: 6.7 Consensus size: 42
76956354 AGTCCTCGTC
*
76956364 TTTAGCGGCGCTTTTTTA-AAAAACGCCGCTAAAGACGAGGACT
1 TTTAGCGGCGC--TTTTAGAAAAACGCCGCTAAAGACCAGGACT
* *
76956407 TTTAGCGGCGCTTTTAGAAAAACGCCGTTGAAGACCAGGACT
1 TTTAGCGGCGCTTTTAGAAAAACGCCGCTAAAGACCAGGACT
* *
76956449 TTTAGCAGCGTCTTTTTAAAACAAACGCCGCTAAAGACCAGGACT
1 TTTAGCGGCG-C-TTTTAGAA-AAACGCCGCTAAAGACCAGGACT
76956494 TTTAGCGGCGCTTTCTTTA-AAAAACGCCGCTAAAGACCAGGACT
1 TTTAGCGGCGC--T-TTTAGAAAAACGCCGCTAAAGACCAGGACT
* *
76956538 TTTAGCGGCGCCTTTAGAAAAACGCCGCTAAAGACAAGGACT
1 TTTAGCGGCGCTTTTAGAAAAACGCCGCTAAAGACCAGGACT
* *
76956580 TTTAGCGGCGCTTTTAGAAAAACACCGCTAAAGAACAGGACT
1 TTTAGCGGCGCTTTTAGAAAAACGCCGCTAAAGACCAGGACT
*
76956622 TTTAGCGGCGCTTGTTTTATAAAAACGCCGCTAA
1 TTTAGCGGCGC---TTTTAGAAAAACGCCGCTAA
76956656 TTTTCGTAAT
Statistics
Matches: 223, Mismatches: 16, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
41 9 0.04
42 104 0.47
43 12 0.05
44 42 0.19
45 52 0.23
46 4 0.02
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTAGAAAAACGCCGCTAAAGACCAGGACT
Found at i:76956554 original size:131 final size:127
Alignment explanation
Indices: 76956364--76956655 Score: 449
Period size: 131 Copynumber: 2.3 Consensus size: 127
76956354 AGTCCTCGTC
* *
76956364 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAGACGAGGACTTTTAGCGGCGCTTTTAGAAAAA
1 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCCTTTAGAAAAA
* * * * *
76956429 CGCCGTTGAAGACCAGGACTTTTAGCAGCGTCTTTTTAAAACAAACGCCGCTAAAGACCAGGACT
66 CGCCGCTAAAGACAAGGACTTTTAGCAGCG-C-TTTTAAAA-AAACACCGCTAAAGAACAGGACT
76956494 TTTAGCGGCGCTTTCTTTAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCCTTTAGAAAA
1 TTTAGCGGCGCTTT-TTTAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCCTTTAGAAAA
* *
76956559 ACGCCGCTAAAGACAAGGACTTTTAGCGGCGCTTTTAGAAAAACACCGCTAAAGAACAGGACT
65 ACGCCGCTAAAGACAAGGACTTTTAGCAGCGCTTTTAAAAAAACACCGCTAAAGAACAGGACT
76956622 TTTAGCGGCGCTTGTTTTATAAAAACGCCGCTAA
1 TTTAGCGGCGCTT-TTTTA-AAAAACGCCGCTAA
76956656 TTTTCGTAAT
Statistics
Matches: 150, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
128 38 0.25
129 22 0.15
130 15 0.10
131 75 0.50
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (127 bp):
TTTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCCTTTAGAAAAA
CGCCGCTAAAGACAAGGACTTTTAGCAGCGCTTTTAAAAAAACACCGCTAAAGAACAGGACT
Found at i:76956975 original size:21 final size:21
Alignment explanation
Indices: 76956949--76956996 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
76956939 TTATGTTTTG
* *
76956949 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCGCCCTGCTGC
* *
76956970 CTCCGCCTCTCGCCCTGCTGT
1 CTCCGCCTCCCGCCCTGCTGC
76956991 CTCCGC
1 CTCCGC
76956997 TCTAAGTTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.00, C:0.56, G:0.19, T:0.25
Consensus pattern (21 bp):
CTCCGCCTCCCGCCCTGCTGC
Found at i:76963194 original size:10 final size:10
Alignment explanation
Indices: 76963179--76963212 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
76963169 AAATATAAAA
76963179 ACTTATTCAT
1 ACTTATTCAT
76963189 ACTTATTCAT
1 ACTTATTCAT
76963199 ACTTATTCAT
1 ACTTATTCAT
76963209 ACTT
1 ACTT
76963213 CAAATAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (10 bp):
ACTTATTCAT
Found at i:76964767 original size:21 final size:20
Alignment explanation
Indices: 76964743--76964782 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
76964733 GTTGGATAGA
*
76964743 AACATGAAAAAAGACCAAAAG
1 AACATCAAAAAA-ACCAAAAG
*
76964764 AACATCTAAAAAACCAAAA
1 AACATCAAAAAAACCAAAA
76964783 TGGAATCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.68, C:0.17, G:0.07, T:0.07
Consensus pattern (20 bp):
AACATCAAAAAAACCAAAAG
Found at i:76968119 original size:15 final size:15
Alignment explanation
Indices: 76968089--76968130 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
76968079 ACCACTTTTC
*
76968089 ATATATATAT-TTAT
1 ATATATTTATCTTAT
76968103 ATATATTTATCTTAT
1 ATATATTTATCTTAT
*
76968118 ATACATTTATCTT
1 ATATATTTATCTT
76968131 CTAAATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATATTTATCTTAT
Found at i:76968997 original size:14 final size:14
Alignment explanation
Indices: 76968971--76969015 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
76968961 TAAACCTGCT
*
76968971 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
76968985 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
76968999 TAAACCTTAAACTA
1 TAAACCTTAAACCA
76969013 TAA
1 TAA
76969016 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:76969330 original size:39 final size:39
Alignment explanation
Indices: 76969213--76969339 Score: 110
Period size: 42 Copynumber: 3.1 Consensus size: 39
76969203 AATGCTCTGG
* *** * *
76969213 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTA
1 TTTTTAGCGGCATTTTTTTAAAA-CGCCGCTATTGCTTTA
* * *
76969253 TTTTTAGCGGCGTTTTTTTACTAAAACGCCGTTGTTGCTTTA
1 TTTTTAGCGGC-ATTTTTT--TAAAACGCCGCTATTGCTTTA
*
76969295 TTTTTAGCGGCATTTTTTTAAAACGCCACTATTGCTCTGTA
1 TTTTTAGCGGCATTTTTTTAAAACGCCGCTATTGCT-T-TA
76969336 TTTT
1 TTTT
76969340 AAAAATTTTG
Statistics
Matches: 70, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
39 15 0.21
40 12 0.17
41 16 0.23
42 23 0.33
43 4 0.06
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (39 bp):
TTTTTAGCGGCATTTTTTTAAAACGCCGCTATTGCTTTA
Found at i:76969338 original size:41 final size:41
Alignment explanation
Indices: 76969173--76969339 Score: 162
Period size: 41 Copynumber: 4.1 Consensus size: 41
76969163 GTTATATGAC
* **
76969173 TTTTAGCGGCGTTTTACTAAAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTTAT
*
76969214 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-TAT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTTAT
* **
76969254 TTTTAGCGGCGTTTTTTTACTAAAA-CGCCGTTGTTGCT-TTAT
1 TTTTAGCGGCG---TTTTACTAAAAGCGCCGCTAATGCTCTTAT
* ** * *
76969296 TTTTAGCGGCATTTTTTTAAAA-CGCCACTATTGCTCTGTAT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCT-TAT
76969337 TTT
1 TTT
76969340 AAAAATTTTG
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
39 19 0.18
40 13 0.12
41 41 0.39
42 23 0.22
43 10 0.09
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTTAT
Found at i:76969379 original size:12 final size:12
Alignment explanation
Indices: 76969364--76969389 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76969354 GTTTTTTGAT
76969364 AAAACGCCGCTA
1 AAAACGCCGCTA
76969376 AAAACGCCGCTA
1 AAAACGCCGCTA
76969388 AA
1 AA
76969390 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:76973139 original size:27 final size:27
Alignment explanation
Indices: 76973109--76973286 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
76973099 ATATTGAGCC
* *
76973109 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
76973136 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
76973163 CGAACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
76973191 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
76973218 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
76973245 CGCACACTTAGTACAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
76973272 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76973287 GTACAATTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:76973252 original size:82 final size:81
Alignment explanation
Indices: 76973130--76973285 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
76973120 TGCTATATAA
* * * *
76973130 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGAACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGAACACTTAGTACAACATAGTC-GAATCGCA
76973195 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
76973212 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTACAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGAACACTTAGTACAACATAGTCGAATCGCA
76973276 CACTTAGTGC
65 CACTTAGTGC
76973286 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 18 0.28
82 46 0.72
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGAACACTTAGTACAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Done.