Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 234 of 316
Found at i:76985767 original size:38 final size:38
Alignment explanation
Indices: 76985705--76985824 Score: 170
Period size: 38 Copynumber: 3.2 Consensus size: 38
76985695 TTTAAGCTTA
* * *
76985705 GATATAATACCAGCAC-TAGTCCTGCGGGATTTAACCCG
1 GATATAATACCAGTACGAAG-CCTGCGAGATTTAACCCG
76985743 GATATAATACCAGTACGAAGCCTGCGAGATTTAACCCG
1 GATATAATACCAGTACGAAGCCTGCGAGATTTAACCCG
* * *
76985781 GATATAGTACCAGTACGAAGCCTGCAAGATTTAACCTG
1 GATATAATACCAGTACGAAGCCTGCGAGATTTAACCCG
76985819 GATATA
1 GATATA
76985825 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
38 73 0.97
39 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (38 bp):
GATATAATACCAGTACGAAGCCTGCGAGATTTAACCCG
Found at i:76988275 original size:40 final size:39
Alignment explanation
Indices: 76988052--76988313 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
76988042 TTGAATGATG
*
76988052 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
76988090 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
76988131 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
76988170 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
76988209 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
76988248 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
76988287 AACCGGGCTATGTCCCGAAGGAATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
76988314 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
39 130 0.66
40 55 0.28
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:76988278 original size:118 final size:120
Alignment explanation
Indices: 76988052--76988313 Score: 335
Period size: 118 Copynumber: 2.2 Consensus size: 120
76988042 TTGAATGATG
* *
76988052 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
*
76988115 TGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACTA-A
66 TGTGCGAGATACTAAATCTGGGCTAAGCCCGAAGGCATTTGTGCGA-ATTACTATA
*
76988169 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGAT-ACTAAT-TCCGGGCTAAG-CCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TGAC-AATATCCGGACTAAGACCCGAAGGC
* *
76988229 ATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATA
63 ATTTGTGCGAGATACTAAATCTGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTATA
* * *
76988288 ACCGGGCTATGTCCCGAAGGAATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76988314 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
117 45 0.35
118 58 0.46
119 24 0.19
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
TGTGCGAGATACTAAATCTGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATA
Found at i:76996364 original size:39 final size:40
Alignment explanation
Indices: 76996269--76996530 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
76996259 TTGAATGATG
*
76996269 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
76996307 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
76996348 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
76996387 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
76996426 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
76996465 TCCGGGTTAAGTCCCGAAGGCGTTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
76996504 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
76996531 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 57 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:77013193 original size:55 final size:55
Alignment explanation
Indices: 77013109--77013216 Score: 207
Period size: 55 Copynumber: 2.0 Consensus size: 55
77013099 GCTTTGGCTT
77013109 TACTCTCAAGATTATGGTTATTTAGGTAAGTAACACTTGTAACTACATCAAATGA
1 TACTCTCAAGATTATGGTTATTTAGGTAAGTAACACTTGTAACTACATCAAATGA
*
77013164 TACTCTCAAGATTATGGTTTTTTAGGTAAGTAACACTTGTAACTACATCAAAT
1 TACTCTCAAGATTATGGTTATTTAGGTAAGTAACACTTGTAACTACATCAAAT
77013217 TATTTATCCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (55 bp):
TACTCTCAAGATTATGGTTATTTAGGTAAGTAACACTTGTAACTACATCAAATGA
Found at i:77015229 original size:39 final size:40
Alignment explanation
Indices: 77015075--77015296 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 40
77015065 GCTACTCGTT
* * * *
77015075 CAAATGCCTTCGGGACATAACCTGG-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
77015115 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
77015155 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
77015195 CCAATGCCTTCAGG-CTTAGCCCGGAATTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
77015234 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
77015275 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
77015297 AGACATCATT
Statistics
Matches: 157, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 110 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77018105 original size:42 final size:42
Alignment explanation
Indices: 77018039--77018150 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 42
77018029 GAGATTTCGA
* * *
77018039 GTAAGACCAT-GTCTGGAACATGGCATTGATGTGAGAAT-C-GT
1 GTAAGACCATAG-CTGGGATATGGCATTGATGTGAG-ATCCAAT
* **
77018080 GTAAGACCATAGCTGGGCTATTGGCATCAATGTGAGATCCAAT
1 GTAAGACCATAGCTGGGATA-TGGCATTGATGTGAGATCCAAT
*
77018123 GTAAGACCATATCTGGGATATGGCATTG
1 GTAAGACCATAGCTGGGATATGGCATTG
77018151 GTATGATTCT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
41 17 0.30
42 21 0.37
43 19 0.33
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (42 bp):
GTAAGACCATAGCTGGGATATGGCATTGATGTGAGATCCAAT
Found at i:77019039 original size:30 final size:30
Alignment explanation
Indices: 77019005--77019077 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
77018995 TTTGTTGCAT
* * **
77019005 AAGTGTAAATACT-CAAAATTTGAGGGGTTA
1 AAGTGTAAATA-TGAAAAATTTGAAGGACTA
*
77019035 AAGTGCAAATATGAAAAATTTGAAGGACTA
1 AAGTGTAAATATGAAAAATTTGAAGGACTA
77019065 ATAGTGTAAATAT
1 A-AGTGTAAATAT
77019078 TTTAATGGTG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
29 1 0.03
30 24 0.69
31 10 0.29
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (30 bp):
AAGTGTAAATATGAAAAATTTGAAGGACTA
Found at i:77020845 original size:27 final size:27
Alignment explanation
Indices: 77020814--77020991 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77020804 TAAATTGTAC
77020814 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
77020841 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77020867 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
77020895 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
77020923 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77020950 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
77020977 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77020992 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:77020928 original size:82 final size:81
Alignment explanation
Indices: 77020815--77020970 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77020805 AAATTGTACA
* *
77020815 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
77020879 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
77020896 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
77020961 TGCGAGTTGA
65 TGCGAATTGA
77020971 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77020982 original size:82 final size:81
Alignment explanation
Indices: 77020811--77020991 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
77020801 GATTAAATTG
* *
77020811 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
77020876 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
77020892 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77020956 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
77020974 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77020992 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:77028896 original size:27 final size:27
Alignment explanation
Indices: 77028865--77029042 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
77028855 TAAATTGTAC
* *
77028865 AGCACTAAATGTGCTATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
77028892 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77028918 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
77028946 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
77028974 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77029001 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
77029028 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77029043 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:77028979 original size:82 final size:81
Alignment explanation
Indices: 77028866--77029021 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
77028856 AAATTGTACA
* * *
77028866 GCACTAAATGTGCTATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAATGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
77028930 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
77028947 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAATGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
77029012 TGCGAGTTGA
65 TGCGAATTGA
77029022 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 13 0.20
82 51 0.78
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
GCACTAAATGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77029033 original size:82 final size:81
Alignment explanation
Indices: 77028862--77029042 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
77028852 GATTAAATTG
* * * *
77028862 TACAGCACTAAATGTGCTATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
77028927 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
77028943 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77029007 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
77029025 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77029043 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 16 0.20
82 66 0.80
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:77030947 original size:30 final size:29
Alignment explanation
Indices: 77030879--77030950 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
77030869 TTTGGTGCAC
**
77030879 AAGAGTAAATACTCAAAACTTGAAGGGTTA
1 AAGAGTAAATA-TCAAAACTTGAAGGACTA
* * *
77030909 AAGTGTAAATATGAAAATTTGAAGGACTA
1 AAGAGTAAATATCAAAACTTGAAGGACTA
77030938 ATAGAGTAAATAT
1 A-AGAGTAAATAT
77030951 TTTAAGGATG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 15 0.43
30 20 0.57
ACGTcount: A:0.49, C:0.06, G:0.19, T:0.26
Consensus pattern (29 bp):
AAGAGTAAATATCAAAACTTGAAGGACTA
Found at i:77032776 original size:33 final size:33
Alignment explanation
Indices: 77032721--77032876 Score: 86
Period size: 33 Copynumber: 4.7 Consensus size: 33
77032711 AATTGACGGA
* * * *
77032721 TAAGACCATGGTTGGGCCATGGCAATATATGTG
1 TAAGACCATAGCTAGGCTATGGCAATATATGTG
*
77032754 TAAGACCATAGCTAGGCTATGGC-ATCATGATG-A
1 TAAGACCATAGCTAGGCTATGGCAAT-AT-ATGTG
* * ** *
77032787 TAAGACCATATCTAGGATATGGCACCACGA-GTG
1 TAAGACCATAGCTAGGCTATGGCAATA-TATGTG
* * * * * *
77032820 CAAGACCATGGCTGGGCCATGGCAATACACGTG
1 TAAGACCATAGCTAGGCTATGGCAATATATGTG
* *
77032853 TAAGACCTTAG-TTGGACTATGGCA
1 TAAGACCATAGCTAGG-CTATGGCA
77032877 TCATACCATA
Statistics
Matches: 91, Mismatches: 25, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
32 7 0.08
33 81 0.89
34 3 0.03
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (33 bp):
TAAGACCATAGCTAGGCTATGGCAATATATGTG
Found at i:77032939 original size:45 final size:45
Alignment explanation
Indices: 77032890--77033007 Score: 173
Period size: 45 Copynumber: 2.6 Consensus size: 45
77032880 TACCATAAAT
*
77032890 GAGTAAGACCATAATTGAAAGACGCTATGGCATCACAATTCAAAC
1 GAGTAAGACCATAGTTGAAAGACGCTATGGCATCACAATTCAAAC
* * * *
77032935 GAGTAAGACCATAGCTGAAAGATGCTATGGCATCACGATTCAAAT
1 GAGTAAGACCATAGTTGAAAGACGCTATGGCATCACAATTCAAAC
* *
77032980 GTGTAAGACCATAGTTGAAAGACACTAT
1 GAGTAAGACCATAGTTGAAAGACGCTAT
77033008 AGAAATATGA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (45 bp):
GAGTAAGACCATAGTTGAAAGACGCTATGGCATCACAATTCAAAC
Found at i:77033043 original size:46 final size:45
Alignment explanation
Indices: 77032983--77033185 Score: 219
Period size: 46 Copynumber: 4.4 Consensus size: 45
77032973 TTCAAATGTG
* * * *
77032983 TAAGACCATAGTTGAAAGACACTATAGAAATATGAT-GAGAAATGAA
1 TAAGACCATGGTTGAAAGATACCAT-GAAACATGATAG-GAAATGAA
* * *
77033029 TAAGACTATGGTTGAAAGATACCATGACAACATGACAGGAAATAAA
1 TAAGACCATGGTTGAAAGATACCATGA-AACATGATAGGAAATGAA
* *
77033075 TAAGACCATGGTTGAAAGATACCATGGCAGCATGATAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCAT-GAAACATGATAGGAAATGAA
* * * *
77033121 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCAT-GAAACATGATAGGAAATGAA
**
77033167 TAAGACCATTCTTGAAAGA
1 TAAGACCATGGTTGAAAGA
77033186 GACTATGGCA
Statistics
Matches: 136, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
45 2 0.01
46 132 0.97
47 2 0.01
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.20
Consensus pattern (45 bp):
TAAGACCATGGTTGAAAGATACCATGAAACATGATAGGAAATGAA
Found at i:77033194 original size:46 final size:46
Alignment explanation
Indices: 77033022--77033218 Score: 243
Period size: 46 Copynumber: 4.3 Consensus size: 46
77033012 ATATGATGAG
* * *
77033022 AAATGAATAAGACTATGGTTGAAAGATACCATGACAACATGACAGG
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* * * *
77033068 AAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCATGATAGG
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
77033114 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* ** * * * *
77033160 AAATGAGTAAGACCATTCTTGAAAGAGACTATGGCATCATGTC-GA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* *
77033205 AGATAAATAAGACC
1 AAATGAATAAGACC
77033219 CTGGATGGGA
Statistics
Matches: 132, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
45 13 0.10
46 119 0.90
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.20
Consensus pattern (46 bp):
AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
Found at i:77033194 original size:92 final size:92
Alignment explanation
Indices: 77032976--77033200 Score: 281
Period size: 92 Copynumber: 2.4 Consensus size: 92
77032966 ATCACGATTC
* * * * *
77032976 AAATGTGTAAGACCATAGTTGAAAGACACTATAGAAATATGATGAGAAATGAATAAGACTATGGT
1 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACATGATGAGAAATGAATAAGACCATGGT
*
77033041 TGAAAGATACCATGACAACATGACAGG
66 TGAAAGATACCATGACAACATGACAGA
* * * * * *
77033068 AAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCATGAT-AGGAAATGAATAAGACCATGG
1 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACATGATGA-GAAATGAATAAGACCATGG
*
77033132 TTGAAAGATACCATGGCAACATGACAGA
65 TTGAAAGATACCATGACAACATGACAGA
** * *
77033160 AAATGAGTAAGACCATTCTTGAAAGAGACTATGGCATCATG
1 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACATG
77033201 TCGAAGATAA
Statistics
Matches: 112, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
91 1 0.01
92 111 0.99
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21
Consensus pattern (92 bp):
AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACATGATGAGAAATGAATAAGACCATGGT
TGAAAGATACCATGACAACATGACAGA
Found at i:77033924 original size:13 final size:13
Alignment explanation
Indices: 77033908--77033941 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
77033898 CAAGGACATG
77033908 GGCGTGTGCGCAA
1 GGCGTGTGCGCAA
77033921 GGCGTGTGCGCAA
1 GGCGTGTGCGCAA
77033934 GGCGTGTG
1 GGCGTGTG
77033942 AAGTCTGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.12, C:0.21, G:0.50, T:0.18
Consensus pattern (13 bp):
GGCGTGTGCGCAA
Found at i:77042116 original size:27 final size:27
Alignment explanation
Indices: 77042075--77042128 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
77042065 TGTCATGTGA
* *
77042075 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
77042102 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
77042129 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:77047965 original size:27 final size:27
Alignment explanation
Indices: 77047924--77047977 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
77047914 TGTCATGTGA
* *
77047924 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
77047951 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
77047978 GGTTGTACGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:77048301 original size:49 final size:50
Alignment explanation
Indices: 77048231--77048469 Score: 286
Period size: 49 Copynumber: 4.8 Consensus size: 50
77048221 TGAGGTCATG
* *
77048231 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* * * *
77048280 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCA-ATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-AGGTCACA
* * ** *
77048331 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* * ** *
77048381 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
*
77048430 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA
77048470 CCTTGTCTAC
Statistics
Matches: 159, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
49 78 0.49
50 44 0.28
51 37 0.23
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
Found at i:77048467 original size:99 final size:100
Alignment explanation
Indices: 77048231--77048469 Score: 320
Period size: 101 Copynumber: 2.4 Consensus size: 100
77048221 TGAGGTCATG
* *
77048231 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
*
77048296 TAGGCTACTATGCGTACCCGATAACTTCAATCACA
66 TAGGCTACTACGCGTACCCGATAACTTCAATCACA
* * ** *
77048331 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAGT
* ** ** *
77048396 GTAGGCTACTACGTGTACTGGATAA-TT-GGTCGCA
65 GTAGGCTACTACGCGTACCCGATAACTTCAATCACA
*
77048430 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA
77048470 CCTTGTCTAC
Statistics
Matches: 119, Mismatches: 19, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
99 39 0.33
100 39 0.33
101 41 0.34
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
TAGGCTACTACGCGTACCCGATAACTTCAATCACA
Found at i:77051540 original size:24 final size:24
Alignment explanation
Indices: 77051519--77051566 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
77051509 TTCGTATTCT
77051519 GTGATAGAAATATGGCCCTATTTAA
1 GTGATAGAAATATGGCCCTATTT-A
**
77051544 GTTCTAGAAATATGGCCCTATTT
1 GTGATAGAAATATGGCCCTATTT
77051567 TATTAATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (24 bp):
GTGATAGAAATATGGCCCTATTTA
Found at i:77052179 original size:19 final size:19
Alignment explanation
Indices: 77052142--77052181 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
77052132 TGAAAATGTG
*
77052142 TAAGTTATGCCTATAAATT
1 TAAGTTATGCCTACAAATT
*
77052161 TAAGTTATGCCTACGAATT
1 TAAGTTATGCCTACAAATT
77052180 TA
1 TA
77052182 TGATGACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (19 bp):
TAAGTTATGCCTACAAATT
Found at i:77053855 original size:17 final size:17
Alignment explanation
Indices: 77053833--77053880 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
77053823 ATACTTTTCA
77053833 CATACATTCAATCATTT
1 CATACATTCAATCATTT
*
77053850 CATACAATC-ATCA-TT
1 CATACATTCAATCATTT
77053865 CA-A-ATTCAATCTATTT
1 CATACATTCAATC-ATTT
77053881 ATCCCTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
13 3 0.12
14 4 0.15
15 5 0.19
16 6 0.23
17 8 0.31
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (17 bp):
CATACATTCAATCATTT
Found at i:77054975 original size:44 final size:44
Alignment explanation
Indices: 77054914--77055014 Score: 168
Period size: 44 Copynumber: 2.3 Consensus size: 44
77054904 TAAAACATAG
* *
77054914 AAAAAT-AAACAAATAAGCTATAAAGCTTAGTAACTTCGTATGT
1 AAAAATGAAATAATTAAGCTATAAAGCTTAGTAACTTCGTATGT
*
77054957 AAAAATGAAATAATTAAGCTATAAAGCTTAGTAAGTTCGTATGT
1 AAAAATGAAATAATTAAGCTATAAAGCTTAGTAACTTCGTATGT
77055001 AAAAATGAAATAAT
1 AAAAATGAAATAAT
77055015 CACATCATTC
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 6 0.11
44 48 0.89
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (44 bp):
AAAAATGAAATAATTAAGCTATAAAGCTTAGTAACTTCGTATGT
Found at i:77057746 original size:27 final size:25
Alignment explanation
Indices: 77057711--77057823 Score: 91
Period size: 27 Copynumber: 4.2 Consensus size: 25
77057701 AGCATGGCTG
* *
77057711 CCAGAACAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGGCAGAG-CA
*
77057737 CCAGATACAGATAGTCGTGGCAGAGCTA
1 CCAGA-ACAGATAAT-GTGGCAGAGC-A
*
77057765 CTAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAG-CA
* *
77057792 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAG-CA
77057820 CCAG
1 CCAG
77057824 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
26 6 0.08
27 36 0.50
28 30 0.42
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (25 bp):
CCAGAACAGATAATGTGGCAGAGCA
Found at i:77057818 original size:28 final size:27
Alignment explanation
Indices: 77057735--77057823 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
77057725 GTGACAAAGT
* *
77057735 CACCAGATACAGATAGTCGTGGCAGAGC
1 CACCAGAT-CAGATATTTGTGGCAGAGC
* * * *
77057763 TACTAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCAGAGC
*
77057790 CACCAGATCAGATAATTTGTGGCATAGC
1 CACCAGATCAGAT-ATTTGTGGCAGAGC
77057818 CACCAG
1 CACCAG
77057824 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 26 0.53
28 23 0.47
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CACCAGATCAGATATTTGTGGCAGAGC
Found at i:77065597 original size:28 final size:26
Alignment explanation
Indices: 77065542--77065651 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 26
77065532 AGCATGGCTG
* *
77065542 CTAGAACAGATAATGTGACAGAGTCA
1 CTAGAACAGATAATGTGGCAGAGCCA
*
77065568 CTAGATACTGATAATCGTGGCAGAGCCA
1 CTAGA-ACAGATAAT-GTGGCAGAGCCA
77065596 CTAGAACAGATATATGTGGCAGAGCCA
1 CTAGAACAGATA-ATGTGGCAGAGCCA
* * *
77065623 CCAGATCAGATAATTTGTGGCATAGCCA
1 CTAGAACAGATAA--TGTGGCAGAGCCA
77065651 C
1 C
77065652 CAGGATGCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 6 0.08
27 36 0.50
28 30 0.42
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (26 bp):
CTAGAACAGATAATGTGGCAGAGCCA
Found at i:77065650 original size:55 final size:54
Alignment explanation
Indices: 77065542--77065651 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 54
77065532 AGCATGGCTG
* * *
77065542 CTAGAACAGATAATGTGACAGAGTCACTAGATACTGATAATCGTGGCAGAGCCA
1 CTAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
77065596 CTAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTTGTGGCATAGCCA
1 CTAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAA-TCGTGGCAGAGCCA
77065651 C
1 C
77065652 CAGGATGCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 18 0.38
55 30 0.62
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (54 bp):
CTAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:77070029 original size:46 final size:47
Alignment explanation
Indices: 77069923--77070053 Score: 133
Period size: 46 Copynumber: 2.8 Consensus size: 47
77069913 CCACATTATC
* * *
77069923 AGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCAGCATTGAGACG
1 AGAGCCAGTGTAAGA-CATGTCTAGGACATGGCATCAGCATCGAGACG
* * * * *
77069971 AGTGCTACTGTAAGACATGTCTAGGACA-GGCTTCAGCCTCGAGACG
1 AGAGCCAGTGTAAGACATGTCTAGGACATGGCATCAGCATCGAGACG
* *
77070017 TA-AGCCAGTGTAAGACATGTTTGGGACAT-GCATCAGC
1 -AGAGCCAGTGTAAGACATGTCTAGGACATGGCATCAGC
77070054 TACGGATACG
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 43 0.62
47 13 0.19
48 13 0.19
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACATGTCTAGGACATGGCATCAGCATCGAGACG
Found at i:77072806 original size:120 final size:119
Alignment explanation
Indices: 77072584--77072846 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 119
77072574 TCCTCGTTCA
* * **
77072584 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGATT
* * * *
77072649 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATAC-ACTTAGCAC
* *
77072702 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACAC-AATGCCTTCGGGACTTAACCCGGA
** * ** *
77072767 TTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATATACACTTAGCAC
*
77072823 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
77072847 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 36 0.30
120 80 0.66
121 6 0.05
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATACACTTAGCAC
Found at i:77072807 original size:40 final size:40
Alignment explanation
Indices: 77072584--77072793 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
77072574 TCCTCGTTCA
* * * ** *
77072584 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
77072623 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
77072663 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
77072703 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
77072743 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
77072783 AAGGCCTTCGG
1 AATGCCTTCGG
77072794 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:77072830 original size:80 final size:80
Alignment explanation
Indices: 77072587--77072846 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 80
77072577 TCGTTCAAAT
* * * ** * * *
77072587 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
77072651 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
* * *
77072666 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
77072731 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
** * **
77072746 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
*
77072810 ATTC-ACTTAGCAC-AAA
65 A-ACAAC-TAGCACGAAA
*
77072826 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
77072847 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
79 33 0.21
80 120 0.75
81 6 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ACAACTAGCACGAAA
Found at i:77072855 original size:41 final size:41
Alignment explanation
Indices: 77072778--77072855 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
77072768 TTAGTATCTC
* * *
77072778 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
77072819 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
77072856 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:77089172 original size:29 final size:29
Alignment explanation
Indices: 77089138--77089209 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
77089128 ATCAACCGCG
* * *
77089138 CACACTTAGTGCCATGCACTTTAAACTCA
1 CACACTTAGTGCCATACAATTTAAACCCA
** *
77089167 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCCATACAATTTAAACCCA
77089196 CACACTTAGTGCCA
1 CACACTTAGTGCCA
77089210 ATCTCATGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATACAATTTAAACCCA
Found at i:77107925 original size:16 final size:15
Alignment explanation
Indices: 77107899--77107933 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
77107889 TGATGTGAAT
77107899 AATATAAAATATTAA
1 AATATAAAATATTAA
*
77107914 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
77107930 AATA
1 AATA
77107934 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:77108105 original size:20 final size:20
Alignment explanation
Indices: 77108048--77108107 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
77108038 AATACTACAT
77108048 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
77108067 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
77108090 AAATATGTACATAATATA
1 AAATATGTACATAATATA
77108108 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:77108146 original size:22 final size:23
Alignment explanation
Indices: 77108085--77108155 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 23
77108075 ACGTGATAAT
*
77108085 ATTAAAAATATGTACATAATATA
1 ATTAAAAATATATACATAATATA
* *
77108108 GTGTAAAAAATACATACATAATATA
1 AT-T-AAAAATATATACATAATATA
*
77108133 ATT-AAAATATATACATAAGATA
1 ATTAAAAATATATACATAATATA
77108155 A
1 A
77108156 CATGTAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
22 18 0.45
23 1 0.03
24 2 0.05
25 19 0.47
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (23 bp):
ATTAAAAATATATACATAATATA
Found at i:77108227 original size:25 final size:26
Alignment explanation
Indices: 77108170--77108228 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
77108160 TAAAAAAAAT
* *
77108170 ATATATATATAAATAATATAGTATTA
1 ATATATATATAAATAAAATAATATTA
* *
77108196 A-AGATATATACATAAAATAATA-TA
1 ATATATATATAAATAAAATAATATTA
77108220 ATATATATA
1 ATATATATA
77108229 CGTAATATAG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 3 0.11
25 23 0.85
26 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (26 bp):
ATATATATATAAATAAAATAATATTA
Found at i:77109705 original size:30 final size:30
Alignment explanation
Indices: 77109669--77109727 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
77109659 TGCAAAGCAT
77109669 AAATT-AAAAGACTCAACTCAACTCTCGCAG
1 AAATTAAAAAG-CTCAACTCAACTCTCGCAG
* *
77109699 AAATTAAAAAGCTCAACTCACCTTTCGCA
1 AAATTAAAAAGCTCAACTCAACTCTCGCA
77109728 ATATGAGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.42, C:0.27, G:0.08, T:0.22
Consensus pattern (30 bp):
AAATTAAAAAGCTCAACTCAACTCTCGCAG
Found at i:77110131 original size:170 final size:167
Alignment explanation
Indices: 77109930--77110678 Score: 473
Period size: 150 Copynumber: 4.8 Consensus size: 167
77109920 ATAAATTGAA
* * *
77109930 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
*
77109995 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
77110059 TGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
127 TGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
* * * * *
77110100 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
* * * *
77110165 AACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
66 AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
77110229 -TTTTTTT-------A-AAA---AAACA-G-AAATTG
131 TTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
* * * * ** * **
77110252 AAAATACTTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTTTTTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTG-A
* * * * * * * **
77110315 AAATAGAAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTTATTTCTCGCAATATGAGTTGA
65 AAACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
77110380 ----ATTTTGAAA-ACAGAAATT-------G-AAA-T-
130 TTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
* * * ** * *
77110403 ----TACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
* * * * * **
77110460 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
66 AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
77110524 ATTTTTTT--------GAAA--G--ACA-G-AAATTG
131 TTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
* * ** *
77110547 AAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCATAATATGAGTTGA--TTTTTGA
1 AAAATACCTCAGCGTGTG-ACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGA
* * * * **
77110609 AAACAGAAATTGGAAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGA
65 AAACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
77110674 ATTTT
130 TTTTT
77110679 GAAAACAGAA
Statistics
Matches: 492, Mismatches: 59, Indels: 75
0.79 0.09 0.12
Matches are distributed among these distances:
140 4 0.01
142 4 0.01
143 1 0.00
144 60 0.12
145 5 0.01
147 48 0.10
148 11 0.02
149 4 0.01
150 133 0.27
151 62 0.13
152 21 0.04
153 5 0.01
154 4 0.01
155 1 0.00
156 3 0.01
157 3 0.01
158 1 0.00
165 7 0.01
166 2 0.00
167 37 0.08
169 18 0.04
170 58 0.12
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (167 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
Found at i:77110435 original size:72 final size:72
Alignment explanation
Indices: 77110094--77110762 Score: 773
Period size: 72 Copynumber: 9.0 Consensus size: 72
77110084 TGAAAAACGA
* * *** * *
77110094 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TT
*
77110159 TTTGACAACAG
62 TTTGAAAACAG
* * * **
77110170 AAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTT
*
77110235 TAAAAAAACAG
64 T--GAAAACAG
* * **
77110246 AAATTGAAAATACTTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTTTTTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG--TTGATTTT
*
77110311 TGAAAAATAG
64 TG-AAAACAG
* * * *
77110321 AAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTTATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
77110386 AAAACAG
66 AAAACAG
* * *
77110393 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
77110458 AAAACAG
66 AAAACAG
* *
77110465 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-A--TTT
77110530 TTGAAAGACAG
63 TTGAAA-ACAG
* * ** **
77110541 AAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCATAATATGAGTTGATTT
1 AAATTGAAAATACCTCAGC--GTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
77110605 TTGAAAACAG
63 TTGAAAACAG
* * * *
77110615 AAATTGGAAATACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
77110680 AAAACAG
66 AAAACAG
* ** *
77110687 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTTGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTT
77110752 TGAAAACAG
64 TGAAAACAG
77110761 AA
1 AA
77110763 GTAACAACAT
Statistics
Matches: 520, Mismatches: 58, Indels: 32
0.85 0.10 0.05
Matches are distributed among these distances:
71 1 0.00
72 226 0.43
73 8 0.02
74 75 0.14
75 75 0.14
76 100 0.19
77 1 0.00
78 33 0.06
79 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (72 bp):
AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG
AAAACAG
Found at i:77110630 original size:150 final size:145
Alignment explanation
Indices: 77110094--77110762 Score: 765
Period size: 150 Copynumber: 4.5 Consensus size: 145
77110084 TGAAAAACGA
* * *** * *
77110094 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTGACC-GAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TT
* * * * **
77110159 TTTGACAACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
63 TTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* *
77110224 GTTGATTTTTTTAAAAAAACAG
128 GTTGA--ATTTT--GAAAACAG
* * **
77110246 AAATTGAAAATACTTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTTTTTTT
1 AAATTGAAAATACCTCAGCATGTGAC-CGAGGCTCAACTCATTTCTCGCAATATGAG--TTGATT
* * * * * *
77110309 TTTGAAAAATAGAAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTTATTTCTCGCAATATG
63 TTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
77110374 AGTTGAATTTTGAAAACAG
127 AGTTGAATTTTGAAAACAG
* * * * *
77110393 AAATTGAAATTACCTCA--ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
1 AAATTGAAAATACCTCAGCATGTGAC-CGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
77110456 TGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
65 TGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
77110521 TGAATTTTTTTGAAAGACAG
130 TGAA---TTTTGAAA-ACAG
** **
77110541 AAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCATAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTG-ACCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
*
77110606 TGAAAACAGAAATTGGAAA-TACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGAG
65 TGAAAACAGAAATT-GAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
77110670 TTGAATTTTGAAAACAG
129 TTGAATTTTGAAAACAG
* * * *
77110687 AAATTGAAATTACCTCAGCGTGT-CCCGAGGCTCAACTCATTTCTTGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCATGTGACCGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTT
77110751 TTGAAAACAGAA
64 TTGAAAACAGAA
77110763 GTAACAACAT
Statistics
Matches: 450, Mismatches: 51, Indels: 38
0.83 0.09 0.07
Matches are distributed among these distances:
144 91 0.20
145 10 0.02
146 40 0.09
147 70 0.16
148 20 0.04
149 4 0.01
150 130 0.29
151 63 0.14
152 22 0.05
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (145 bp):
AAATTGAAAATACCTCAGCATGTGACCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
GAATTTTGAAAACAG
Found at i:77110631 original size:222 final size:219
Alignment explanation
Indices: 77110094--77110762 Score: 921
Period size: 222 Copynumber: 3.0 Consensus size: 219
77110084 TGAAAAACGA
* * * *
77110094 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGTAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTGACC-GAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TT
* * * * **
77110159 TTTGACAACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
63 TTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * * * *
77110224 GTTGATTTTTTTAAAAAAACAGAAATTGAAAATACTTCAGCATGTCTTGAGGCTCAACTCATTTC
128 GTTGA--ATTTT--GAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTC
** *
77110289 TCGCAATATGAGTTTTTTTTTTTGAAAAATAG
189 TCGCAATATGAGTTGATTTTTTTG-AAAACAG
* * * ** * *
77110321 AAATTGAAAATACCTTAGCATGT--CTTGAGGCTCAACTTATTTCTCGCAATATGAGTTGAATTT
1 AAATTGAAAATACCTCAGCATGTGAC-CGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTT
77110384 TGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
65 TGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
*
77110449 TGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
130 TGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAA
77110514 TATGAGTTGAATTTTTTTGAAAGACAG
195 TATGAGTTG-ATTTTTTTGAAA-ACAG
*
77110541 AAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCATAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCATGTG-ACCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTT
*
77110606 TGAAAACAGAAATTGGAAA-TACCTCAACGTGTCTTAAGGCTCAACTCATTTCTCGCAATATGAG
65 TGAAAACAGAAATT-GAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
** *
77110670 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATTTCTTGCA
129 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCA
77110735 ATATGAGTTGATTTTTTTGAAAACAG
194 ATATGAGTTGATTTTTTTGAAAACAG
77110761 AA
1 AA
77110763 GTAACAACAT
Statistics
Matches: 396, Mismatches: 39, Indels: 21
0.87 0.09 0.05
Matches are distributed among these distances:
219 63 0.16
220 39 0.10
221 16 0.04
222 160 0.40
223 70 0.18
225 28 0.07
227 20 0.05
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (219 bp):
AAATTGAAAATACCTCAGCATGTGACCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTT
GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
GAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
ATGAGTTGATTTTTTTGAAAACAG
Found at i:77122674 original size:16 final size:15
Alignment explanation
Indices: 77122648--77122682 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
77122638 TGATGTGAAT
77122648 AATATAAAATATTAA
1 AATATAAAATATTAA
*
77122663 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
77122679 AATA
1 AATA
77122683 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:77122870 original size:25 final size:25
Alignment explanation
Indices: 77122834--77122980 Score: 111
Period size: 25 Copynumber: 5.8 Consensus size: 25
77122824 TGATAATATT
* *
77122834 AAAATATGTACATAATATAGTGTAA
1 AAAATATATACATAATATAGTATAA
* *
77122859 AAAATACATACATAATATA--AT-T
1 AAAATATATACATAATATAGTATAA
* *
77122881 AAAATATATACATAAGATAACATGTAAAAA
1 AAAATATATACAT-A-AT-ATA-GT-ATAA
* *
77122911 AAAATATATAAATAATATAGTATTA
1 AAAATATATACATAATATAGTATAA
* *
77122936 AAGATATATACATAAAATAGTATAA
1 AAAATATATACATAATATAGTATAA
* * *
77122961 TATATATATACGTAATATAG
1 AAAATATATACATAATATAG
77122981 AATTTAGAAT
Statistics
Matches: 94, Mismatches: 20, Indels: 16
0.72 0.15 0.12
Matches are distributed among these distances:
22 12 0.13
23 2 0.02
24 2 0.02
25 58 0.62
26 2 0.02
27 2 0.02
28 2 0.02
29 2 0.02
30 12 0.13
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (25 bp):
AAAATATATACATAATATAGTATAA
Found at i:77122926 original size:47 final size:47
Alignment explanation
Indices: 77122811--77122926 Score: 121
Period size: 47 Copynumber: 2.5 Consensus size: 47
77122801 GTACATATAT
* * * * *
77122811 AAAAATAAATACGTGATA-ATATTAAAATATGTACATAATATAGTGTA
1 AAAAATAAATACATAATATA-ATTAAAATATATACATAAGATAATGTA
*
77122858 AAAAATACATACATAATATAATTAAAATATATACATAAGATAACATGTA
1 AAAAATAAATACATAATATAATTAAAATATATACATAAGAT-A-ATGTA
*
77122907 AAAAA-AAATATATAA-ATAAT
1 AAAAATAAATACATAATATAAT
77122927 ATAGTATTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
47 39 0.67
48 10 0.17
49 9 0.16
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.29
Consensus pattern (47 bp):
AAAAATAAATACATAATATAATTAAAATATATACATAAGATAATGTA
Found at i:77123043 original size:23 final size:25
Alignment explanation
Indices: 77123000--77123045 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77122990 TATACCTAAT
77123000 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
77123025 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
77123046 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:77123680 original size:30 final size:30
Alignment explanation
Indices: 77123528--77123672 Score: 254
Period size: 30 Copynumber: 4.8 Consensus size: 30
77123518 ACAAGTGGTG
77123528 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
1 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
77123558 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
1 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
77123588 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
1 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
* * * *
77123618 GTGGAGTAAGTGTAGCTAGTGGAGTTGGTG
1 GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
77123648 GTGGAGCAAGTGTGGCTAGTGGAGT
1 GTGGAGCAAGTGTGGCTAGTGGAGT
77123673 TGGTGGTGAC
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 109 1.00
ACGTcount: A:0.22, C:0.06, G:0.47, T:0.25
Consensus pattern (30 bp):
GTGGAGCAAGTGTGGCTAGTGGAGTAGGTA
Found at i:77124595 original size:123 final size:123
Alignment explanation
Indices: 77124452--77124703 Score: 470
Period size: 123 Copynumber: 2.0 Consensus size: 123
77124442 GTTAGTCCAC
* *
77124452 TAGTTCTCAGTTTGATTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTTTA
1 TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAA-TTAA
77124517 A-AAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
65 ACAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
77124575 TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTAAA
1 TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTAAA
77124640 CAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
66 CAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
77124698 TAGTTC
1 TAGTTC
77124704 ATGGATCAAT
Statistics
Matches: 126, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
122 4 0.03
123 122 0.97
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (123 bp):
TAGTTCTCAGTTTGAGTAGTTTGTTTGGTTCGATCAAATAAATTATAAAAACCCATAAAATTAAA
CAAAAATAGAGAAATTTGGTTCAACTGCTTTCTTTAGCTTGATTCAACCAGTCTATAT
Found at i:77149996 original size:15 final size:15
Alignment explanation
Indices: 77149963--77150035 Score: 92
Period size: 15 Copynumber: 4.9 Consensus size: 15
77149953 TATGATATTG
**
77149963 TATCTTGGATTTCCG
1 TATCTTGGATTTCTT
77149978 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
**
77149993 TATCTAAGATTTCTT
1 TATCTTGGATTTCTT
*
77150008 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
*
77150023 TATCTTGGTTTTC
1 TATCTTGGATTTC
77150036 ATGTCATATC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 49 1.00
ACGTcount: A:0.15, C:0.16, G:0.14, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:77158517 original size:48 final size:48
Alignment explanation
Indices: 77158475--77158793 Score: 361
Period size: 48 Copynumber: 6.6 Consensus size: 48
77158465 CATATCGGTG
* * *
77158475 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * * *
77158523 GCGATGCCATGTCCTAGACATGGTCTTACATTGGCACATATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * *
77158571 -CAATGCCATGTTCCAGAGATGGTCTTACACTGGCACACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * *
77158618 CCGATGCCATGTCCCATACATGGTCTTATAGTGGCACACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * * *
77158666 CCGATGCCATGTCCCAGATATGGTCTTACAGTGGTACACATATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * * * * * * * * **
77158714 TCGATGCCATGTTCTAAATATGGTCTTACACTGGCTCTCATCTCGGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC-AACA
*
77158763 CTGATGCCATGTCCCAGACATGGTCTTACAC
1 CCGATGCCATGTCCCAGACATGGTCTTACAC
77158794 GGGATTTCAT
Statistics
Matches: 228, Mismatches: 41, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
47 41 0.18
48 160 0.70
49 27 0.12
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
Found at i:77158598 original size:95 final size:96
Alignment explanation
Indices: 77158478--77158793 Score: 357
Period size: 95 Copynumber: 3.3 Consensus size: 96
77158468 ATCGGTGCCG
* * * *
77158478 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCAGCGATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAGCGATGCCATGTCCTAAACA
* *
77158543 TGGTCTTACATTGGCACATATATCAACA-CA
66 TGGTCTTACACTGGCACACATATCAACACCA
* * * * *
77158573 ATGCCATGTTCCAGAGATGGTCTTACACTGGCACACATATCAACACCGATGCCATGTCCCATACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAGCGATGCCATGTCCTAAACA
* * *
77158638 TGGTCTTATAGTGGCACACATATCAACACCG
66 TGGTCTTACACTGGCACACATATCAACACCA
* * * * *
77158669 ATGCCATGTCCCAGATATGGTCTTACAGTGGTACACATATCAAC-GTCGATGCCATGTTCTAAAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAG-CGATGCCATGTCCTAAAC
* * * * ** **
77158733 ATGGTCTTACACTGGCTCTCATCTCGGATGCTG
65 ATGGTCTTACACTGGCACACATATC-AACACCA
77158766 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
77158794 GGGATTTCAT
Statistics
Matches: 186, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
95 82 0.44
96 75 0.40
97 29 0.16
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAGCGATGCCATGTCCTAAACA
TGGTCTTACACTGGCACACATATCAACACCA
Found at i:77158643 original size:143 final size:145
Alignment explanation
Indices: 77158475--77158793 Score: 408
Period size: 143 Copynumber: 2.2 Consensus size: 145
77158465 CATATCGGTG
* * *
77158475 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCAGCGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAG
* * *
77158540 ACATGGTCTTACATTGGCACATATATCAAC-ACAATGCCATGTTCCAGAGATGGTCTTACACTGG
66 ACATGGTCTTACAGTGGCACACATATCAACGACAATGCCATGTTCCAAAGATGGTCTTACACTGG
77158604 CACACATATC-AACA
131 CACACATATCGAACA
* * * *
77158618 CCGATGCCATGTCCCATACATGGTCTTATAGTGGCACACATATCAACACCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAG
* * * * * *
77158683 ATATGGTCTTACAGTGGTACACATATCAACGTCGATGCCATGTTCTAAATATGGTCTTACACTGG
66 ACATGGTCTTACAGTGGCACACATATCAACGACAATGCCATGTTCCAAAGATGGTCTTACACTGG
* * * * **
77158748 CTCTCATCTCGGATG
131 CACACATATCGAACA
* *
77158763 CTGATGCCATGTCCCAGACATGGTCTTACAC
1 CCGATGCCATGTCCCAAACATGGTCTTACAC
77158794 GGGATTTCAT
Statistics
Matches: 148, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
143 84 0.57
144 36 0.24
145 28 0.19
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (145 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAG
ACATGGTCTTACAGTGGCACACATATCAACGACAATGCCATGTTCCAAAGATGGTCTTACACTGG
CACACATATCGAACA
Found at i:77162815 original size:46 final size:46
Alignment explanation
Indices: 77162672--77162815 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
77162662 CCCGCCCATA
*
77162672 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * * *
77162721 --CGAACTCGGACTCAACTCAACGAGTTCAGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
77162764 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
77162811 AGTGA
1 AGTGA
77162816 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 33 0.43
47 28 0.37
48 6 0.08
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:77164561 original size:15 final size:15
Alignment explanation
Indices: 77164541--77164581 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
77164531 CAAGAAAACT
77164541 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
77164556 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
77164571 GTATAAAGAAA
1 GAATAAAGAAA
77164582 CCGAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.17, T:0.15
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:77167659 original size:93 final size:93
Alignment explanation
Indices: 77167529--77167699 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
77167519 CGCATAAGTG
* * *
77167529 AACTCGGACTCAACTCAATGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
77167594 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
*
77167622 AACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
77167686 CGAGTTCGGGTGCC
65 CGAGCTCGGATGCC
77167700 CAAACATCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:77167690 original size:46 final size:46
Alignment explanation
Indices: 77167521--77167694 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
77167511 GTAACCCGCG
* * * *
77167521 CATAAGTGAACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATC
* * *
77167567 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC
*
77167617 TC-TCA---AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
77167660 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
77167695 GTGCCCAAAC
Statistics
Matches: 106, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 1 0.01
43 9 0.08
44 1 0.01
45 1 0.01
46 58 0.55
47 27 0.25
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
Found at i:77167714 original size:46 final size:47
Alignment explanation
Indices: 77167523--77167714 Score: 143
Period size: 46 Copynumber: 4.1 Consensus size: 47
77167513 AACCCGCGCA
* * *
77167523 TAAGTGAACTCGGACTCAACTCAATGAGCTT--GG-GCGT-TCGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGTGCCTAT-ACATCC
* *
77167568 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTA--TACATC-C
* * * * *
77167619 TCA---AACTCGGACTCAACTCAACGAGTTC-GG-ACATTTGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
* *
77167661 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCCAAACATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
77167709 T-AGTGA
1 TAAGTGA
77167715 CATGTCACTT
Statistics
Matches: 114, Mismatches: 19, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
45 3 0.03
46 58 0.51
47 28 0.25
48 9 0.08
50 6 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
Found at i:77169068 original size:214 final size:214
Alignment explanation
Indices: 77168699--77169127 Score: 777
Period size: 214 Copynumber: 2.0 Consensus size: 214
77168689 TACTCAACTA
* * *
77168699 ACCTTTAAACATCAACTGGGAGCGTAGGTCCGCGAACAATATTTAAGTTTATCAACTAGGAGCGT
1 ACCTTTAAACATCAACTGGGAGCGTAAGTCCACGAACAATATTGAAGTTTATCAACTAGGAGCGT
* * *
77168764 AGGCCGTGAGTTGTTTTGGAGTAGTGAGTTTACATCAGCCAACTCAAATAAATGAAAGTTGTGAG
66 AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
77168829 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
131 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
77168894 GGTCTGCGAGCTGTTTCGG
196 GGTCTGCGAGCTGTTTCGG
* *
77168913 ACCTTTAAACATCAACTGGGAGCGTAAGTTCACGAACAATATTGAAGTTTATCAACTGGGAGCGT
1 ACCTTTAAACATCAACTGGGAGCGTAAGTCCACGAACAATATTGAAGTTTATCAACTAGGAGCGT
77168978 AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
66 AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
*
77169043 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGTTGAAGTTTATTAGCTGGAAGTGTA
131 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
77169108 GGTCTGCGAGCTGTTTCGG
196 GGTCTGCGAGCTGTTTCGG
77169127 A
1 A
77169128 GTAGCAAGCT
Statistics
Matches: 206, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
214 206 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (214 bp):
ACCTTTAAACATCAACTGGGAGCGTAAGTCCACGAACAATATTGAAGTTTATCAACTAGGAGCGT
AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
GGTCTGCGAGCTGTTTCGG
Found at i:77169275 original size:104 final size:104
Alignment explanation
Indices: 77169109--77169431 Score: 448
Period size: 104 Copynumber: 3.1 Consensus size: 104
77169099 GGAAGTGTAG
* ** *
77169109 GTCTGCGAGCTGTTTCGGAGTAGCAAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAAT
1 GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
77169174 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
66 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
* *
77169213 GTCTGCGAGCTGTTTTGAAGTAGTGAGCTTAACTTAGCTAACTCAAATAAATGAAGGTTGTGAGT
1 GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
* * *
77169278 GTAACTCAGTTAAACTTTAAACATCAACTGGGAGCAAAA
66 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
*** * * * *
77169317 GTCCATGAGTTGTTTCGAAGTAGTGAGCTTAACTCAACTAACTCAAATAAATTATGGTTGTGAGT
1 GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
* * * * *
77169382 ATAACTTAGCTAACCTTTAAACATCAGTTGGGAGCATAG
66 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
*
77169421 GTCTGTGAGCT
1 GTCTGCGAGCT
77169432 ATGTTGAAAT
Statistics
Matches: 190, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
104 190 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (104 bp):
GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
Found at i:77171635 original size:30 final size:30
Alignment explanation
Indices: 77171599--77171660 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
77171589 AATGTGAAAA
77171599 GTTATCAAGGTATAAAAATGGGTCATGGAT
1 GTTATCAAGGTATAAAAATGGGTCATGGAT
*
77171629 GTTATCAAGGTATGAAAATGGGTCATGGAT
1 GTTATCAAGGTATAAAAATGGGTCATGGAT
77171659 GT
1 GT
77171661 ATTATGATGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (30 bp):
GTTATCAAGGTATAAAAATGGGTCATGGAT
Found at i:77180561 original size:48 final size:48
Alignment explanation
Indices: 77180332--77180563 Score: 234
Period size: 48 Copynumber: 4.8 Consensus size: 48
77180322 GTAAAATTCT
* * *
77180332 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATGTATTG-GTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA--TATTGAG-GCC
** * *
77180382 TTTTCCATGTCCCAGACATGGTCTTACACTAGCTTACATATTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCC
* * * *** *
77180430 AATGCCATGTCCCAGACATGGTCTTACA-TTGCCTCTCATAACAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACATATTGAGGCC
* * * *
77180478 GATGCCATGTTCTAAACATGGTCTTACACTGGCTCACATATTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCC
* *
77180526 GATGTCATGTCCCAGACATGGTCTTAAACTAGCTCACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
77180564 AATAACCCTA
Statistics
Matches: 146, Mismatches: 33, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
47 2 0.01
48 110 0.75
49 3 0.02
50 31 0.21
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCC
Found at i:77189134 original size:68 final size:67
Alignment explanation
Indices: 77189062--77189211 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
77189052 CATCATGTGT
* * * *
77189062 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
77189124 ATGTAG
62 ATGTAG
** * *
77189130 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
77189195 AG
66 AG
77189197 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
77189212 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:77189167 original size:64 final size:64
Alignment explanation
Indices: 77189086--77189269 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
77189076 AGACATTATG
* *
77189086 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
77189150 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
77189215 AA
63 AA
* * * * *
77189217 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCAAGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
77189270 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77191636 original size:30 final size:30
Alignment explanation
Indices: 77191591--77191650 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
77191581 ATTTAATACG
* *
77191591 AACTTTGGCAAAATTATATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
77191621 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
77191651 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:77195603 original size:23 final size:23
Alignment explanation
Indices: 77195577--77195625 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
77195567 TCAACCAATC
* *
77195577 CATACCTAAAATAACATCAAATT
1 CATACCCAAAATAACATCAAACT
77195600 CATACCCAAAATAACATCAAACT
1 CATACCCAAAATAACATCAAACT
77195623 CAT
1 CAT
77195626 CAAATGGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (23 bp):
CATACCCAAAATAACATCAAACT
Found at i:77202105 original size:48 final size:47
Alignment explanation
Indices: 77201875--77202107 Score: 209
Period size: 48 Copynumber: 4.8 Consensus size: 47
77201865 GGTAAAATGC
* * ** *
77201875 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGTATCGTTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACT-GCTCACA--TATTGAGGA
** * * * *
77201925 CTTTTCCATGTCCCAGACATGGTCTTCCACTGACTTACATATTGAGG-
1 CGATGCCATGTCCCAAACATGGTCTTACACTG-CTCACATATTGAGGA
* ** **
77201972 CTGATGCCATGTCCCAAACATGGTCTTACACTGCCTCTCATA-AAAATA
1 C-GATGCCATGTCCCAAACATGGTCTTACACTG-CTCACATATTGAGGA
* *
77202020 TAGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGA
1 -CGATGCCATGTCCCAAACATGGTCTTACACT-GCTCACATATTGAGGA
77202069 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA
1 CGATGCCATGTCCCAAACATGGTCTTACACT-GCTCACA
77202108 AATAACCCTA
Statistics
Matches: 145, Mismatches: 32, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
47 2 0.01
48 109 0.75
49 4 0.03
50 30 0.21
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGCTCACATATTGAGGA
Found at i:77208079 original size:16 final size:15
Alignment explanation
Indices: 77208054--77208087 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
77208044 GAAGTTGATA
*
77208054 ATAATTAATATATATT
1 ATAATAAATATA-ATT
77208070 ATAATAAATATAATT
1 ATAATAAATATAATT
77208085 ATA
1 ATA
77208088 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:77211000 original size:16 final size:16
Alignment explanation
Indices: 77210979--77211010 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
77210969 TCTTTTCTTT
77210979 GGCACACATTGGACCG
1 GGCACACATTGGACCG
77210995 GGCACACATTGGACCG
1 GGCACACATTGGACCG
77211011 AACTTACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.31, T:0.12
Consensus pattern (16 bp):
GGCACACATTGGACCG
Found at i:77235293 original size:48 final size:47
Alignment explanation
Indices: 77235214--77235361 Score: 197
Period size: 48 Copynumber: 3.1 Consensus size: 47
77235204 TTGATGTACA
* * *
77235214 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATACGTATG
1 AGATATATATATGTGGTAAAG-CGAAAGGCTAATGTGAAATATGTATG
77235262 AGATATATATATGTGGTAAAGTCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAG-CGAAAGGCTAATGTGAAATATGTATG
** ** *
77235310 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCGAAA-GGCTAATGTGAAATATGTATG
77235358 AGAT
1 AGAT
77235362 GTGTATATAT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 4 0.05
48 84 0.95
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (47 bp):
AGATATATATATGTGGTAAAGCGAAAGGCTAATGTGAAATATGTATG
Found at i:77237575 original size:40 final size:40
Alignment explanation
Indices: 77237520--77237723 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
77237510 TGGATGATAA
* *
77237520 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
77237560 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77237600 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
77237640 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
77237680 TCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
77237720 CCGG
1 CCGG
77237724 TTCAATCCCG
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.02
40 148 0.98
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77245889 original size:43 final size:43
Alignment explanation
Indices: 77245841--77245942 Score: 177
Period size: 43 Copynumber: 2.4 Consensus size: 43
77245831 CACGGGCAGA
* *
77245841 GACACGGGCGTGTGTCTCAGCCTTGTCTGACACATGGTCAGGT
1 GACACGGCCGTGTGTCTCAGCCGTGTCTGACACATGGTCAGGT
*
77245884 GACACGGCCGTGTGTTTCAGCCGTGTCTGACACATGGTCAGGT
1 GACACGGCCGTGTGTCTCAGCCGTGTCTGACACATGGTCAGGT
77245927 GACACGGCCGTGTGTC
1 GACACGGCCGTGTGTC
77245943 CCCTAGTGTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.16, C:0.26, G:0.33, T:0.25
Consensus pattern (43 bp):
GACACGGCCGTGTGTCTCAGCCGTGTCTGACACATGGTCAGGT
Found at i:77246251 original size:19 final size:19
Alignment explanation
Indices: 77246227--77246272 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
77246217 CCAGTGAAAC
77246227 GGGCGTGTCTTCAGCCTGT
1 GGGCGTGTCTTCAGCCTGT
*
77246246 GGGCGTGTCTTCGGCCTGT
1 GGGCGTGTCTTCAGCCTGT
77246265 GGGCGTGT
1 GGGCGTGT
77246273 GCCCCCTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.02, C:0.24, G:0.43, T:0.30
Consensus pattern (19 bp):
GGGCGTGTCTTCAGCCTGT
Found at i:77254716 original size:39 final size:40
Alignment explanation
Indices: 77254671--77254842 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
77254661 GCTCCTCGTT
* * *
77254671 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
77254711 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
77254750 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
77254790 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
77254830 CAAATGCCTTCGG
1 CAAATGCCTTCGG
77254843 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:77254771 original size:40 final size:39
Alignment explanation
Indices: 77254673--77254895 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
77254663 TCCTCGTTCA
* * * *
77254673 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
77254712 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
77254751 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
77254791 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
77254831 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
77254872 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
77254896 CAGCATCCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:77254855 original size:80 final size:79
Alignment explanation
Indices: 77254671--77254895 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
77254661 GCTCCTCGTT
* * * * *
77254671 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
77254735 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
77254750 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
77254815 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
77254830 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
77254894 GA
63 GA
77254896 CAGCATCCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:77261842 original size:40 final size:41
Alignment explanation
Indices: 77261742--77261913 Score: 210
Period size: 40 Copynumber: 4.3 Consensus size: 41
77261732 GCTCCTCGTT
* *
77261742 CAAATGCCTTCGGGACATAGCCCGGT-TTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGTATTTAGTAACTCGCA
*
77261782 C-AATGCCTTCGGGACATAACCC-GTATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGTATTTAGTAACTCGCA
* * *
77261821 CGAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGTATTTAGTAACTCGCA
* * * * *
77261861 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGTATTTAGTAACTCGCA
77261901 CAAATGCCTTCGG
1 CAAATGCCTTCGG
77261914 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.02
39 33 0.28
40 78 0.66
41 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACATAACCCGGTATTTAGTAACTCGCA
Found at i:77261926 original size:80 final size:79
Alignment explanation
Indices: 77261742--77261966 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
77261732 GCTCCTCGTT
* * * * * *
77261742 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCC-GT
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
77261806 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
77261821 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
77261886 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
77261901 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
77261965 GA
63 GA
77261967 CAGCATCCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 67 0.55
81 14 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:77270288 original size:47 final size:47
Alignment explanation
Indices: 77270222--77270342 Score: 188
Period size: 47 Copynumber: 2.6 Consensus size: 47
77270212 GCATTGGCAC
*
77270222 TAAGAGAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTAG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTAG
* * *
77270269 TAGGACAAGGATGCCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTAG
* *
77270316 TAAGATAAGGATATCATGTAAGACCAT
1 TAAGACAAGGATACCATGTAAGACCAT
77270343 ACCAAGGCAT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTAG
Found at i:77270450 original size:55 final size:55
Alignment explanation
Indices: 77270322--77270518 Score: 222
Period size: 55 Copynumber: 3.6 Consensus size: 55
77270312 TTGGTAAGAT
* * * * * *
77270322 AAGGATATCATGTAAGACCATACCAAGGCATGGAATTGATAAG-CTCTATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATGAGTCTCTATAAGGC
*
77270376 AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATGAGTCACTATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATGAGTCTCTATAAGGC
* * * ** * *
77270431 AAAGG-TCCCATGTACGACCATGTGAAGGCATGGCATTGGTGAGT-TC-ATAAGGC
1 -AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATGAGTCTCTATAAGGC
*
77270484 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCA
77270519 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.27
54 38 0.32
55 42 0.35
56 4 0.03
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (55 bp):
AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATGAGTCTCTATAAGGC
Found at i:77270505 original size:53 final size:54
Alignment explanation
Indices: 77270322--77270529 Score: 213
Period size: 53 Copynumber: 3.9 Consensus size: 54
77270312 TTGGTAAGAT
* * * * * *
77270322 AAGGATATCATGTAAGACCATACCAAGGCATGGAATTGATAAGCTCTATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* *
77270376 AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATGAGTCACTATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATAAGT-TCTATAAGGC
* * * ** * * *
77270431 AAAGG-TCCCATGTACGACCATGTGAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * *
77270484 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
77270530 AAAAAGGAAA
Statistics
Matches: 128, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 38 0.30
55 41 0.32
56 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCACGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:77276843 original size:45 final size:45
Alignment explanation
Indices: 77276793--77277066 Score: 225
Period size: 47 Copynumber: 6.0 Consensus size: 45
77276783 ATTGACGGTT
*
77276793 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGAC
* * * * * *
77276838 AAGGATCCCGTGTAAGACCATGTCAAGACATGGCATCGGCATTGATT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTA-AGA-C
*
77276885 AAGGA-ATCCATGTAAGACCATATCAAG--ATGTGCATTGGCACTAAGA-
1 AAGGATA-CCATGTAAGACCATGTCAAGACATG-GCATTGG---TAAGAC
***
77276931 AA-GATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGAC
* * *** *
77276977 AAGGATGCCATGTAAGGCCATGTTTGGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGAC
* * * *
77277024 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
77277067 CTCTATAAGG
Statistics
Matches: 186, Mismatches: 29, Indels: 28
0.77 0.12 0.12
Matches are distributed among these distances:
45 70 0.38
46 19 0.10
47 87 0.47
48 9 0.05
49 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (45 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGAC
Found at i:77277153 original size:55 final size:54
Alignment explanation
Indices: 77277032--77277220 Score: 152
Period size: 55 Copynumber: 3.5 Consensus size: 54
77277022 ATAAGGATAT
* * * *
77277032 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGCTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGCACTATAAGGAAAGGAAAC
** **
77277086 CATGTAAGACCATGCCAAGACATGGCATTGATGTGTCACTATAAGGTAAAGG-TCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAG-CACTATAAGG-AAAGGAAAC
* *** * ** *
77277141 CATGTAAGACCATTCCAAGGTGTGGCATT-AGTGAGTTC-ATAA-GACAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGA-TAAGCACTATAAGGA-AAGGAAAC
* *
77277194 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
77277221 ATGGTAAGTT
Statistics
Matches: 108, Mismatches: 22, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
51 1 0.01
52 5 0.05
53 27 0.25
54 34 0.31
55 37 0.34
56 4 0.04
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATAAGCACTATAAGGAAAGGAAAC
Found at i:77277970 original size:30 final size:30
Alignment explanation
Indices: 77277935--77277996 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
77277925 GAAATCATGA
*
77277935 AAAACTGAAATTAGCATTAAAACAATATTG
1 AAAACTGAAATTAACATTAAAACAATATTG
*
77277965 AAAACTGAAATTAACATTAAAACAGTATTG
1 AAAACTGAAATTAACATTAAAACAATATTG
77277995 AA
1 AA
77277997 CAGCAACAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.26
Consensus pattern (30 bp):
AAAACTGAAATTAACATTAAAACAATATTG
Found at i:77283604 original size:18 final size:19
Alignment explanation
Indices: 77283578--77283613 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
77283568 CCTTTTTAAT
77283578 TTTTAATTTGATTTTAGTA
1 TTTTAATTTGATTTTAGTA
*
77283597 TTTT-ATTTGCTTTTAGT
1 TTTTAATTTGATTTTAGT
77283614 TTACCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (19 bp):
TTTTAATTTGATTTTAGTA
Found at i:77292735 original size:27 final size:26
Alignment explanation
Indices: 77292694--77292744 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
77292684 CGAGGCTGCC
*
77292694 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
*
77292720 AGATATATGTGGCGAAGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
77292745 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:77306380 original size:40 final size:40
Alignment explanation
Indices: 77306289--77306478 Score: 228
Period size: 40 Copynumber: 4.8 Consensus size: 40
77306279 TGGATGATAA
* * * **
77306289 CCGGGCTAAGTCCC-AAGGCATCTGCT-CTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAAT
77306328 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
77306367 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
77306407 CCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACCCT-AA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAAAT
* *
77306447 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
77306479 AGCTATATCC
Statistics
Matches: 133, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
38 8 0.06
39 29 0.22
40 92 0.69
41 2 0.02
42 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:77314474 original size:39 final size:40
Alignment explanation
Indices: 77314325--77314485 Score: 186
Period size: 39 Copynumber: 4.1 Consensus size: 40
77314315 TGGATGATAA
* * * * **
77314325 CCGGGCTAAGT-CCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
77314364 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
77314403 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCT-AA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAAT
* * * *
77314442 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
77314482 CCGG
1 CCGG
77314486 TTAAATTCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
38 6 0.06
39 65 0.62
40 32 0.30
41 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:77330165 original size:40 final size:39
Alignment explanation
Indices: 77330101--77330312 Score: 246
Period size: 40 Copynumber: 5.3 Consensus size: 39
77330091 TCTTCGGAAT
* * *
77330101 TTAG-CCGGATATAACTACAAGCACAAATGCCTTTGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
*
77330140 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
77330180 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
77330220 TTAACCCGGCTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
77330260 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* *
77330300 TTAACCCGAATAT
1 TTAGCCCGGATAT
77330313 CATTCAAATG
Statistics
Matches: 146, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 8 0.05
40 131 0.90
41 7 0.05
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:77330228 original size:80 final size:80
Alignment explanation
Indices: 77330120--77330312 Score: 332
Period size: 80 Copynumber: 2.4 Consensus size: 80
77330110 TATAACTACA
* * * *
77330120 AGCACAAATGCCTTTGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
77330185 CCGGATAAAATCACT
66 CCGGATAAAATCACT
*
77330200 AGCACAATTGCCTTCGGGTCTTAACCCGGCTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
77330265 CCGGATAAAATCACT
66 CCGGATAAAATCACT
*
77330280 AGCACAATTGCCTTCGGGTCTTAACCCGAATAT
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
77330313 CATTCAAATG
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 106 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
CCGGATAAAATCACT
Found at i:77338226 original size:40 final size:39
Alignment explanation
Indices: 77338162--77338452 Score: 341
Period size: 40 Copynumber: 7.3 Consensus size: 39
77338152 TCTTCGGAAT
* *
77338162 TTAG-CCGGATATAACTACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
*
77338201 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
77338241 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
77338281 TTAACCCGGGTATAGCACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
** * *
77338320 TTAGCCTAGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
77338360 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
77338400 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
*
77338440 TTAACCCGGATAT
1 TTAGCCCGGATAT
77338453 CATTCAAATG
Statistics
Matches: 210, Mismatches: 37, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
39 39 0.19
40 164 0.78
41 7 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:77338289 original size:80 final size:80
Alignment explanation
Indices: 77338181--77338452 Score: 474
Period size: 80 Copynumber: 3.4 Consensus size: 80
77338171 TATAACTACA
* * *
77338181 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
77338246 CCGGATAAAATCACT
66 CCGGATAAAATCACT
*
77338261 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC-ACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
**
77338325 CTAGATAAAATCACT
66 CCGGATAAAATCACT
*
77338340 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
77338405 CCGGATAAAATCACT
66 CCGGATAAAATCACT
77338420 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
77338453 CATTCAAATG
Statistics
Matches: 182, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
79 77 0.42
80 105 0.58
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
CCGGATAAAATCACT
Found at i:77342505 original size:13 final size:13
Alignment explanation
Indices: 77342489--77342521 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
77342479 TTTGATTAAA
*
77342489 TTAGTTAATTAGT
1 TTAGATAATTAGT
77342502 TTAGATAATTAGT
1 TTAGATAATTAGT
77342515 TTA-ATAA
1 TTAGATAA
77342522 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:77347872 original size:6 final size:6
Alignment explanation
Indices: 77347861--77347907 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
77347851 CCTCTTATTT
* * *
77347861 TTTTTA TTTTTA TTTTTA TTTTTA TGTTTA TGTTTA TGTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
77347908 CATTATAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:77350832 original size:13 final size:13
Alignment explanation
Indices: 77350816--77350848 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
77350806 TTTGATTAAA
*
77350816 TTAGTTAATTAGT
1 TTAGATAATTAGT
77350829 TTAGATAATTAGT
1 TTAGATAATTAGT
77350842 TTA-ATAA
1 TTAGATAA
77350849 ATAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:77353341 original size:43 final size:43
Alignment explanation
Indices: 77353293--77353520 Score: 334
Period size: 43 Copynumber: 5.3 Consensus size: 43
77353283 TAAAACAACT
* *
77353293 CCGCTAATA-GTCATGACATTTAGCGGCGCTTTTCCCACAGACG
1 CCGCTAA-AGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACG
* *
77353336 CCGCTAAGGGTCATGACATTTAGCGGCGCTTTTCCCACAAACG
1 CCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACG
*
77353379 CCGCTAAAGGTCATGACCTTTAGCGGTGC-TTTCCCACAAACG
1 CCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACG
* * *
77353421 CCTCCAAAGGTCATGACCTGTAGCGGCGCTTTTCCCACAAACG
1 CCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACG
* *
77353464 CCGCTAAAGGTCATGACCTTTAGCAGCGCTTTTCACACAAACG
1 CCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACG
*
77353507 CCGCTAAAAGTCAT
1 CCGCTAAAGGTCAT
77353521 AAAATTTAAA
Statistics
Matches: 168, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
42 38 0.23
43 130 0.77
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (43 bp):
CCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACG
Found at i:77353445 original size:85 final size:86
Alignment explanation
Indices: 77353293--77353520 Score: 325
Period size: 85 Copynumber: 2.7 Consensus size: 86
77353283 TAAAACAACT
* * * * *
77353293 CCGCTAATA-GTCATGACATTTAGCGGCGCTTTTCCCACAGACGCCGCTAAGGGTCATGACATTT
1 CCGCTAA-AGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCCAAAGGTCATGACATGT
77353357 AGCGGCGCTTTTCCCACAAACG
65 AGCGGCGCTTTTCCCACAAACG
* * *
77353379 CCGCTAAAGGTCATGACCTTTAGCGGTGC-TTTCCCACAAACGCCTCCAAAGGTCATGACCTGTA
1 CCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCCAAAGGTCATGACATGTA
77353443 GCGGCGCTTTTCCCACAAACG
66 GCGGCGCTTTTCCCACAAACG
* * * *
77353464 CCGCTAAAGGTCATGACCTTTAGCAGCGCTTTTCACACAAACGCCGCTAAAAGTCAT
1 CCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCCAAAGGTCAT
77353521 AAAATTTAAA
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
85 78 0.62
86 48 0.38
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (86 bp):
CCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCCAAAGGTCATGACATGTA
GCGGCGCTTTTCCCACAAACG
Found at i:77360988 original size:21 final size:21
Alignment explanation
Indices: 77360964--77361017 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
77360954 CTTAACCCTT
* *
77360964 AACCCCTAAGCCTTAAACCCC
1 AACCCCTAAACCATAAACCCC
* **
77360985 AACCCTTAAACCATAAACCAT
1 AACCCCTAAACCATAAACCCC
*
77361006 AATCCCTAAACC
1 AACCCCTAAACC
77361018 CATGATCCCT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.41, C:0.41, G:0.02, T:0.17
Consensus pattern (21 bp):
AACCCCTAAACCATAAACCCC
Found at i:77360994 original size:14 final size:15
Alignment explanation
Indices: 77360956--77360996 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
77360946 ACCTAACACT
77360956 TAACCCTT-AACCCC
1 TAACCCTTAAACCCC
*
77360970 TAAGCCTTAAACCCC
1 TAACCCTTAAACCCC
77360985 -AACCCTTAAACC
1 TAACCCTTAAACC
77360997 ATAAACCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.34, C:0.44, G:0.02, T:0.20
Consensus pattern (15 bp):
TAACCCTTAAACCCC
Found at i:77361020 original size:15 final size:15
Alignment explanation
Indices: 77360998--77361032 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
77360988 CCTTAAACCA
77360998 TAAA-CCATAATCCC
1 TAAACCCATAATCCC
*
77361012 TAAACCCATGATCCC
1 TAAACCCATAATCCC
77361027 TAAACC
1 TAAACC
77361033 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.40, C:0.37, G:0.03, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCC
Found at i:77361207 original size:7 final size:7
Alignment explanation
Indices: 77361195--77361242 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
77361185 ACTAATTAAT
77361195 CTAAACC
1 CTAAACC
77361202 CTAAACTC
1 CTAAAC-C
*
77361210 CTAATCC
1 CTAAACC
77361217 CTAAACC
1 CTAAACC
*
77361224 TTAAACC
1 CTAAACC
* *
77361231 GTAAATC
1 CTAAACC
77361238 CTAAA
1 CTAAA
77361243 ACATGAACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 28 0.82
8 6 0.18
ACGTcount: A:0.42, C:0.33, G:0.02, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:77361314 original size:25 final size:25
Alignment explanation
Indices: 77361286--77361333 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
77361276 AACACTTAAA
*
77361286 CCTTCAACCACAA-CCCTTAAACCAC
1 CCTTAAACCACAATCCC-TAAACCAC
*
77361311 CCTTAAACCATAATCCCTAAACC
1 CCTTAAACCACAATCCCTAAACC
77361334 CATAATCCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.19
Consensus pattern (25 bp):
CCTTAAACCACAATCCCTAAACCAC
Found at i:77361336 original size:15 final size:15
Alignment explanation
Indices: 77361314--77361348 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
77361304 AAACCACCCT
*
77361314 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
77361328 TAAACCCATAATCCA
1 TAAACCCATAATCCA
77361343 TAAACC
1 TAAACC
77361349 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:77361353 original size:22 final size:21
Alignment explanation
Indices: 77361316--77361398 Score: 67
Period size: 22 Copynumber: 3.9 Consensus size: 21
77361306 ACCACCCTTA
* *
77361316 AACCATAATCCCTAAACCCAT
1 AACCATAAACCTTAAACCCAT
***
77361337 AATCCATAAACCTTAAAATAAT
1 AA-CCATAAACCTTAAACCCAT
* *
77361359 AACTCATAAACATTAAACCCTT
1 AAC-CATAAACCTTAAACCCAT
* *
77361381 AACCATATACCGTAAACC
1 AACCATAAACCTTAAACC
77361399 TAAACTATAA
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
21 15 0.32
22 32 0.68
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (21 bp):
AACCATAAACCTTAAACCCAT
Found at i:77361840 original size:41 final size:41
Alignment explanation
Indices: 77361752--77361844 Score: 100
Period size: 41 Copynumber: 2.3 Consensus size: 41
77361742 TAATTTTTTT
* * *
77361752 GCGGCG-TTTTTTGTAAAGCGCTGCTAAAGATCAAGCATTA
1 GCGGCGTTTTTTTGAAAAGCGCCGCTAAAGATCAACCATTA
* * * *
77361792 ACAGCGTTTTTTTGAAAAGCGCCGCTAAAGTTGAACC-TATA
1 GCGGCGTTTTTTTGAAAAGCGCCGCTAAAGATCAACCAT-TA
77361833 GCGGCGTTTTTT
1 GCGGCGTTTTTT
77361845 AATAAGCGTC
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
40 5 0.12
41 37 0.88
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (41 bp):
GCGGCGTTTTTTTGAAAAGCGCCGCTAAAGATCAACCATTA
Found at i:77361900 original size:39 final size:39
Alignment explanation
Indices: 77361799--77361922 Score: 133
Period size: 40 Copynumber: 3.1 Consensus size: 39
77361789 TTAACAGCGT
* * * *
77361799 TTTTTTGAAAAGCGCCGCTAAAG-TTGAACCTATAGCGGCG
1 TTTTTT-AAAAGCGCCGCTAATGCTCG-ATCTTTAGCGGCG
* * *
77361839 TTTTTTAATAAGCGTCGTTAATGCTCGATCTTTAGCGGCA
1 TTTTTTAA-AAGCGCCGCTAATGCTCGATCTTTAGCGGCG
* *
77361879 TTTTTTAAAAGCGCCGCTAATGCTCGTTCTTTAGTGGCG
1 TTTTTTAAAAGCGCCGCTAATGCTCGATCTTTAGCGGCG
77361918 TTTTT
1 TTTTT
77361923 CATTCAAACG
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
39 33 0.47
40 35 0.50
41 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (39 bp):
TTTTTTAAAAGCGCCGCTAATGCTCGATCTTTAGCGGCG
Found at i:77366507 original size:40 final size:40
Alignment explanation
Indices: 77366452--77366695 Score: 305
Period size: 40 Copynumber: 6.1 Consensus size: 40
77366442 TGGATGATAA
* *
77366452 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTA-TAT
*
77366492 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
* *
77366532 CCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
* *
77366572 CTGGGCTAAGTCCCGAAGGCATTTGTC-CGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-CGCGAGTTACTATAT
*
77366612 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
* * * * * * *
77366652 CCCGGCTATGTTCTGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTA-CTATAT
77366692 CCGG
1 CCGG
77366696 TTCAATCCCG
Statistics
Matches: 181, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 178 0.98
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAT
Found at i:77376285 original size:28 final size:28
Alignment explanation
Indices: 77376254--77376307 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
77376244 TCCACAAAGG
*
77376254 CTTCCATTTTATTAGAGCACCAAAAATT
1 CTTCCATTTTATTAAAGCACCAAAAATT
*
77376282 CTTCCATTTTATTAAATCACCAAAAA
1 CTTCCATTTTATTAAAGCACCAAAAA
77376308 CGCATCCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (28 bp):
CTTCCATTTTATTAAAGCACCAAAAATT
Found at i:77376315 original size:28 final size:28
Alignment explanation
Indices: 77376256--77376319 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
77376246 CACAAAGGCT
* ** *
77376256 TCCATTTTATTAGAGCACCAAAAATTCT
1 TCCATTTTATTAAAGCACCAAAAACGCA
*
77376284 TCCATTTTATTAAATCACCAAAAACGCA
1 TCCATTTTATTAAAGCACCAAAAACGCA
77376312 TCCATTTT
1 TCCATTTT
77376320 GTGGTGCGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (28 bp):
TCCATTTTATTAAAGCACCAAAAACGCA
Found at i:77382167 original size:27 final size:27
Alignment explanation
Indices: 77382121--77382172 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
77382111 GTCATACATA
**
77382121 TCATAGGGGTATGTCAGTCATTTTACC
1 TCATAGGGGTATAACAGTCATTTTACC
*
77382148 TCATAGGGGTATAACCGTCATTTTA
1 TCATAGGGGTATAACAGTCATTTTA
77382173 TCAGTATGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (27 bp):
TCATAGGGGTATAACAGTCATTTTACC
Found at i:77389099 original size:27 final size:27
Alignment explanation
Indices: 77389068--77389245 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77389058 TAAATTGTAC
77389068 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
77389095 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77389121 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
77389149 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
77389177 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77389204 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
77389231 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77389246 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:77389182 original size:82 final size:81
Alignment explanation
Indices: 77389069--77389224 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77389059 AAATTGTACA
* *
77389069 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
77389133 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
77389150 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
77389215 TGCGAGTTGA
65 TGCGAATTGA
77389225 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77389236 original size:82 final size:81
Alignment explanation
Indices: 77389065--77389245 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
77389055 GATTAAATTG
* *
77389065 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
77389130 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
77389146 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77389210 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
77389228 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77389246 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:77391761 original size:52 final size:52
Alignment explanation
Indices: 77391678--77391781 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
77391668 AGGATGGTTA
77391678 CTTCGGGCCGCACTGGGCCGAAAGGCCCCATGTGGGCCCAATAAGCCTACGG
1 CTTCGGGCCGCACTGGGCCGAAAGGCCCCATGTGGGCCCAATAAGCCTACGG
**
77391730 CTTCGGGCCGCACTGGGCCGAAAGGGGCCATGTGGGCCCAATAAGCCTACGG
1 CTTCGGGCCGCACTGGGCCGAAAGGCCCCATGTGGGCCCAATAAGCCTACGG
77391782 GCCCAATTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.19, C:0.33, G:0.35, T:0.13
Consensus pattern (52 bp):
CTTCGGGCCGCACTGGGCCGAAAGGCCCCATGTGGGCCCAATAAGCCTACGG
Found at i:77391982 original size:27 final size:27
Alignment explanation
Indices: 77391951--77392192 Score: 277
Period size: 27 Copynumber: 9.0 Consensus size: 27
77391941 TAGAATACTT
**
77391951 TAGTTTACCAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
77391978 TAGTTTGTAAAATTACTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
*
77392005 TTGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77392032 TAGTTTGTAAAATTACCAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77392059 TGGTTTACAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * * **
77392086 TGGTTTGTAAAATTACTAAAATACCAT
1 TAGTTTATAAAATTACCAAAATACCCC
*
77392113 TTGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77392140 TAATTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * * **
77392167 TAATTTGTGAAATTACTGAAATACCC
1 TAGTTTATAAAATTACCAAAATACCC
77392193 TCGACCTGTA
Statistics
Matches: 183, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Done.