Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 235 of 316
Found at i:77392147 original size:108 final size:108
Alignment explanation
Indices: 77391953--77392165 Score: 390
Period size: 108 Copynumber: 2.0 Consensus size: 108
77391943 GAATACTTTA
* *
77391953 GTTTACCAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCATTTGTTTATAAAAT
*
77392018 TACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
66 TACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTTG
*
77392061 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTTGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCATTTGTTTATAAAAT
77392126 TACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCC
66 TACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCC
77392166 CTAATTTGTG
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
108 101 1.00
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (108 bp):
GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCATTTGTTTATAAAAT
TACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTTG
Found at i:77392192 original size:54 final size:54
Alignment explanation
Indices: 77391960--77392165 Score: 349
Period size: 54 Copynumber: 3.8 Consensus size: 54
77391950 TTAGTTTACC
*
77391960 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTTGTTTATA
* *
77392014 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTTGTTTATA
* * *
77392068 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTTGTTTATA
*
77392122 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
77392166 CTAATTTGTG
Statistics
Matches: 140, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 140 1.00
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTTGTTTATA
Found at i:77392205 original size:81 final size:81
Alignment explanation
Indices: 77391960--77392263 Score: 281
Period size: 81 Copynumber: 3.8 Consensus size: 81
77391950 TTAGTTTACC
* * * ** * *
77391960 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
*
77392025 ATACCC-CTAGTTTGTA
66 ATACCCTCGA-TTTGTA
* ** ** **
77392041 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
* * *
77392106 ATACCATTTG-TTTATA
66 ATACC-CTCGATTTGTA
* *
77392122 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
**
77392187 ATACCCTCGACCTGTA
66 ATACCCTCGATTTGTA
*** * * * * **
77392203 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCCCAATTTACAAAATTAC
1 AAATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTAC
77392264 CGTTTTACCC
Statistics
Matches: 182, Mismatches: 37, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
80 6 0.03
81 176 0.97
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAA
ATACCCTCGATTTGTA
Found at i:77392245 original size:27 final size:26
Alignment explanation
Indices: 77391960--77392247 Score: 220
Period size: 27 Copynumber: 10.7 Consensus size: 26
77391950 TTAGTTTACC
*
77391960 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* * *
77391987 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC--CGATTTGTA
*
77392014 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
* * **
77392041 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCC-CGATTTGTA
*
77392068 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* ** *
77392095 AAATTACTAAAATACCATTTG-TTTATA
1 AAATTACCAAAATACC--CCGATTTGTA
*
77392122 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
77392149 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
** **
77392176 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
77392203 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*
77392230 AAATTACCAAAGTACCCC
1 AAATTACCAAAATACCCC
77392248 CAATTTACAA
Statistics
Matches: 212, Mismatches: 38, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.00
27 209 0.99
28 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:77392307 original size:27 final size:27
Alignment explanation
Indices: 77392277--77392495 Score: 257
Period size: 27 Copynumber: 8.1 Consensus size: 27
77392267 TTTACCCTTG
*
77392277 ATTATCGAAATACCCTTGTAGGGTAGA
1 ATTATCGAAATACCCCTGTAGGGTAGA
77392304 ATTA-CTGAAATACCCCTGTAGGGTAGA
1 ATTATC-GAAATACCCCTGTAGGGTAGA
* *
77392331 ATTATTGAAATACCCCTGTAAGGTAGA
1 ATTATCGAAATACCCCTGTAGGGTAGA
*
77392358 ATTATCGAAATACCCCTATAGGGTAGA
1 ATTATCGAAATACCCCTGTAGGGTAGA
**
77392385 ATTATTAAAATACCCCTGTAGGGTAGA
1 ATTATCGAAATACCCCTGTAGGGTAGA
* *
77392412 ATTACCGAAATACCCTTGTAGGGTAGA
1 ATTATCGAAATACCCCTGTAGGGTAGA
* * *
77392439 AATA-CTAAAATA-CCCTATAGGGTAGA
1 ATTATC-GAAATACCCCTGTAGGGTAGA
* * *
77392465 ATTA-CGAAGATACCCTTGTGGGGTAAA
1 ATTATCGAA-ATACCCCTGTAGGGTAGA
77392492 ATTA
1 ATTA
77392496 CAATTTTGCC
Statistics
Matches: 164, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
25 2 0.01
26 21 0.13
27 141 0.86
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (27 bp):
ATTATCGAAATACCCCTGTAGGGTAGA
Found at i:77392975 original size:22 final size:21
Alignment explanation
Indices: 77392923--77392987 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
77392913 TTAAAGCCTT
* *
77392923 CTGATTATGGCTTTGTGTCAA
1 CTGATTATGGCTCTGTGCCAA
*
77392944 CTTATATATGGCTCTGTGCCAA
1 CTGAT-TATGGCTCTGTGCCAA
* *
77392966 CCTGATTATGGCTGTATGCCAA
1 -CTGATTATGGCTCTGTGCCAA
77392988 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 4 0.11
22 28 0.78
23 4 0.11
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (21 bp):
CTGATTATGGCTCTGTGCCAA
Found at i:77393176 original size:27 final size:27
Alignment explanation
Indices: 77393146--77393247 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
77393136 ATTCTGTTAA
* *
77393146 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
77393173 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
77393200 GTGGCTCTGCTACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
77393227 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
77393248 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:77393422 original size:6 final size:6
Alignment explanation
Indices: 77393384--77393472 Score: 67
Period size: 6 Copynumber: 14.3 Consensus size: 6
77393374 TTGCATTCAC
* *
77393384 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
77393434 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
77393473 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 18
0.72 0.09 0.20
Matches are distributed among these distances:
5 4 0.06
6 49 0.74
7 11 0.17
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:77393433 original size:31 final size:31
Alignment explanation
Indices: 77393384--77393488 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
77393374 TTGCATTCAC
*
77393384 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* * *
77393416 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
77393447 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
77393477 TTTCTTATTCTG
1 ATTCTGATTCTG
77393489 TAATGGGTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
30 16 0.26
31 37 0.60
32 9 0.15
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:77401972 original size:12 final size:12
Alignment explanation
Indices: 77401955--77401979 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
77401945 AAAAAATGTA
77401955 AAAATCATCAAG
1 AAAATCATCAAG
77401967 AAAATCATCAAG
1 AAAATCATCAAG
77401979 A
1 A
77401980 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:77421920 original size:29 final size:28
Alignment explanation
Indices: 77421884--77421961 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
77421874 TCATGAGATT
77421884 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
77421914 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
77421941 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
77421962 GATCATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:77422180 original size:175 final size:174
Alignment explanation
Indices: 77421914--77422242 Score: 604
Period size: 175 Copynumber: 1.9 Consensus size: 174
77421904 AAATTGTACA
77421914 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATCATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATCATTAAGCACTATG
* *
77421979 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
77422044 TTTTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGG-AAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
77422089 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATCATTAAGCACTATG
77422154 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
77422219 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
77422243 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
174 11 0.07
175 138 0.93
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATCATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:77430089 original size:29 final size:28
Alignment explanation
Indices: 77430053--77430130 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
77430043 TCATGAGATT
77430053 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
77430083 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
77430110 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
77430131 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:77430348 original size:174 final size:174
Alignment explanation
Indices: 77430083--77430410 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
77430073 AAATTGTACA
77430083 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
77430148 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
77430213 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
77430257 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
77430322 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
77430387 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
77430411 ACCTTGAGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:77443184 original size:57 final size:57
Alignment explanation
Indices: 77443116--77443239 Score: 169
Period size: 57 Copynumber: 2.2 Consensus size: 57
77443106 CATTTATAGG
* * *
77443116 CCATTTTCATTTTCATTTAGGAGAAAAGCACATTCATTTCTAAATGATTT-CATTTCT
1 CCATTTTCATTTTCATTTAGGAGAAAACCACAATCATTTCCAAAT-ATTTACATTTCT
* * *
77443173 CCATTTTCATTTTCATTTTGGAGAAGACCATAATCATTTCCAAATATTTCACATTTCT
1 CCATTTTCATTTTCATTTAGGAGAAAACCACAATCATTTCCAAATATTT-ACATTTCT
77443231 CCATTTTCA
1 CCATTTTCA
77443240 CCATTTCTAT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
56 4 0.07
57 39 0.66
58 16 0.27
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (57 bp):
CCATTTTCATTTTCATTTAGGAGAAAACCACAATCATTTCCAAATATTTACATTTCT
Found at i:77447507 original size:27 final size:25
Alignment explanation
Indices: 77447447--77447538 Score: 69
Period size: 27 Copynumber: 3.4 Consensus size: 25
77447437 ATACCCCCAG
* *
77447447 TTGTAAAATTACCAAAGTACCCCTGGT
1 TTGTAAAATTACCAAA-TACCTC-GAT
*
77447474 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-CCAAATA-CCTCGAT
*
77447501 TTGTAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTA-CCAAATA-CCTCGA-T
*
77447528 TTGCAAAATTA
1 TTGTAAAATTA
77447539 TTGAAATGCC
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.02
27 45 0.83
28 8 0.15
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (25 bp):
TTGTAAAATTACCAAATACCTCGAT
Found at i:77447539 original size:27 final size:27
Alignment explanation
Indices: 77447478--77447589 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
77447468 CCTGGTTTAT
* * * *
77447478 AAAATTACCCAAATATCCTCGATTTGT
1 AAAATTATCGAAATACCCTCGATTTGC
77447505 AAAATTATCGAAATACCCTC-AGTTTGC
1 AAAATTATCGAAATACCCTCGA-TTTGC
* * ** *
77447532 AAAATTATTGAAATGCCCTCGACATGT
1 AAAATTATCGAAATACCCTCGATTTGC
* *
77447559 AAAATTATC-AAAGTACCCTCGAATTAC
1 AAAATTATCGAAA-TACCCTCGATTTGC
77447586 AAAA
1 AAAA
77447590 ATTACTATTT
Statistics
Matches: 67, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
26 4 0.06
27 62 0.93
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTCGATTTGC
Found at i:77447610 original size:27 final size:27
Alignment explanation
Indices: 77447572--77447875 Score: 385
Period size: 27 Copynumber: 11.2 Consensus size: 27
77447562 ATTATCAAAG
* * *
77447572 TACCCTCGAATTACAAAAATTACTATTT
1 TACCCTCGATTTAC-AGAATTACTGTTT
* *
77447600 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
77447627 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
77447654 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
77447681 TACCCTCGAATTACAAAAATTATTGTTT
1 TACCCTCGATTTAC-AGAATTACTGTTT
*
77447709 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
77447736 TACCCTCGATTTATAGAATTAGC-ATTT
1 TACCCTCGATTTACAGAATTA-CTGTTT
* *
77447763 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
77447790 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
77447817 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* **
77447844 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
77447871 TACCC
1 TACCC
77447876 CTAGGGTGTT
Statistics
Matches: 246, Mismatches: 27, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
26 1 0.00
27 210 0.85
28 35 0.14
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:77447633 original size:109 final size:109
Alignment explanation
Indices: 77447518--77447864 Score: 310
Period size: 109 Copynumber: 3.2 Consensus size: 109
77447508 ATTATCGAAA
* * *
77447518 TACCCTC-AGTTTGCAAAATTATTGAAATGCCCTCGACATGTA-A-AATTATCAAAGTACCCTCG
1 TACCCTCGA-TTTACAAAATTATTGAAATACCCTCG--ATGTACAGAATTACCAAAGTACCCTCG
77447580 AATTACAAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTT
63 AATTACAAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTT
* * *** * ****
77447627 TACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGAAT
1 TACCCTCGATTTACAAAATTATTGAAATACCCTCGATGTACAGAATTACCAAAGTACCCTCGAAT
* * * * *
77447692 TACAAAAATTATTGTTTTACCCTCGATTTATAGAATTACTGTTT
66 TACAAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTT
* * ** * * ****
77447736 TACCCTCGATTTATAGAATTA--GCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGA
1 TACCCTCGATTTACAAAATTATTG-A-AATACCCTCGATGTACAGAATTACCAAAGTACCCTCGA
* * * **
77447799 TTTAC-AAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
64 ATTACAAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTT
77447844 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAAAATTA
77447865 CCATTTTACC
Statistics
Matches: 207, Mismatches: 26, Indels: 11
0.85 0.11 0.05
Matches are distributed among these distances:
107 5 0.02
108 57 0.28
109 144 0.70
110 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (109 bp):
TACCCTCGATTTACAAAATTATTGAAATACCCTCGATGTACAGAATTACCAAAGTACCCTCGAAT
TACAAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTT
Found at i:77447898 original size:81 final size:81
Alignment explanation
Indices: 77447572--77447875 Score: 428
Period size: 81 Copynumber: 3.7 Consensus size: 81
77447562 ATTATCAAAG
* * * * * *
77447572 TACCCTCGAATTACAAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTAC-AGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGAT
*
77447637 TTATAGAATTATTGTTT
65 TTATAGAATTACTGTTT
* * ***
77447654 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGAATTACAAAAATTATTGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC-AAAATTACCATTTTACCCTCGAT
77447719 TTATAGAATTACTGTTT
65 TTATAGAATTACTGTTT
* * *
77447736 TACCCTCGATTTATAGAATTAGCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* *
77447801 TACAAAATTACTGTTT
66 TATAGAATTACTGTTT
*
77447817 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCC
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCC
77447876 CTAGGGTGTT
Statistics
Matches: 199, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
81 113 0.57
82 86 0.43
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
TATAGAATTACTGTTT
Found at i:77448156 original size:27 final size:26
Alignment explanation
Indices: 77448112--77448163 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
77448102 CTCGCTGCAA
*
77448112 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
77448139 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
77448164 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:77448201 original size:67 final size:68
Alignment explanation
Indices: 77448093--77448232 Score: 201
Period size: 67 Copynumber: 2.1 Consensus size: 68
77448083 AAGGAAGCAT
* * *
77448093 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC-ATATATCTGTTCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACAATATATCTGTTCTGGTGACCTAGCCACA
77448157 ATA
66 ATA
* ** *
77448160 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGTTACATATATATCTGTTCTGGTGGCCTAGCCAC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACA-ATATATCTGTTCTGGTGACCTAGCCAC
77448225 AATA
65 AATA
77448229 TCTG
1 TCTG
77448233 TATCTGGTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
67 33 0.52
69 31 0.48
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.31
Consensus pattern (68 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACAATATATCTGTTCTGGTGACCTAGCCACA
ATA
Found at i:77448252 original size:27 final size:26
Alignment explanation
Indices: 77448200--77448259 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
77448190 CGTTACATAT
*
77448200 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
77448226 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
77448253 ATATCTG
1 ATATCTG
77448260 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:77448409 original size:25 final size:25
Alignment explanation
Indices: 77448381--77448475 Score: 91
Period size: 25 Copynumber: 3.6 Consensus size: 25
77448371 CATTCACATT
* *
77448381 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
* *
77448406 CTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTG------ATTCTGTTACCTAATA
*
77448437 CTGATTCTGATTCTGTTACCTCATA
1 CTGATTCTGATTCTGTTACCTAATA
77448462 CTGATTCTGATTCT
1 CTGATTCTGATTCT
77448476 AATTCTGTCA
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
25 35 0.61
31 22 0.39
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:77448413 original size:31 final size:30
Alignment explanation
Indices: 77448378--77448510 Score: 141
Period size: 31 Copynumber: 4.5 Consensus size: 30
77448368 TTGCATTCAC
* *
77448378 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCT-ATACTG
*
77448409 ATTCTGATTCTAATTCTGTCACC--TA---
1 ATTCTGATTCTGATTCTGTCACCTATACTG
*
77448434 ATTCTGATTCTGATTCTGTTACCTCATACTG
1 ATTCTGATTCTGATTCTGTCACCT-ATACTG
* *
77448465 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCT-ATACTG
*
77448496 ATTCTGATTATGATT
1 ATTCTGATTCTGATT
77448511 ATGATTCTAT
Statistics
Matches: 85, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
25 21 0.25
28 4 0.05
31 60 0.71
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.47
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACCTATACTG
Found at i:77448417 original size:6 final size:6
Alignment explanation
Indices: 77448378--77448518 Score: 74
Period size: 6 Copynumber: 22.8 Consensus size: 6
77448368 TTGCATTCAC
* * *
77448378 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
77448427 -TCACCTA ATTCTG ATTCTG ATTCTG -TTACCTC ATACTG ATTCTG ATTCTA
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * *
77448477 ATTCTG -TCACCTA ATTCTG ATTCTG ATTATG ATTATG ATTCT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
77448519 ATAATGGGCT
Statistics
Matches: 101, Mismatches: 22, Indels: 24
0.69 0.15 0.16
Matches are distributed among these distances:
5 6 0.06
6 82 0.81
7 9 0.09
8 4 0.04
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:77448464 original size:56 final size:56
Alignment explanation
Indices: 77448378--77448504 Score: 236
Period size: 56 Copynumber: 2.3 Consensus size: 56
77448368 TTGCATTCAC
* *
77448378 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTTACCTCATACTGATTCTGATTCTAATTCTGTCACCTA
77448434 ATTCTGATTCTGATTCTGTTACCTCATACTGATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTTACCTCATACTGATTCTGATTCTAATTCTGTCACCTA
77448490 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
77448505 ATGATTATGA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.46
Consensus pattern (56 bp):
ATTCTGATTCTGATTCTGTTACCTCATACTGATTCTGATTCTAATTCTGTCACCTA
Found at i:77448493 original size:25 final size:25
Alignment explanation
Indices: 77448409--77448500 Score: 112
Period size: 25 Copynumber: 3.4 Consensus size: 25
77448399 CCTGATACTG
77448409 ATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTAATTCTGTCACCTA
* *
77448434 ATTCTGATTCTGATTCTGTTACCTCATA
1 ATTCTGATTCTAATTCTGTCA-C-C-TA
77448462 CTGATTCTGATTCTAATTCTGTCACCTA
1 ---ATTCTGATTCTAATTCTGTCACCTA
77448490 ATTCTGATTCT
1 ATTCTGATTCT
77448501 GATTATGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
25 30 0.53
26 1 0.02
27 1 0.02
28 4 0.07
29 1 0.02
30 1 0.02
31 19 0.33
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTGTCACCTA
Found at i:77453954 original size:25 final size:25
Alignment explanation
Indices: 77453925--77454165 Score: 349
Period size: 25 Copynumber: 9.6 Consensus size: 25
77453915 TTGATAAATC
77453925 GCTCTTAATGA-TTCCGGTTAAATTT
1 GCTCTTAAT-ATTTCCGGTTAAATTT
*
77453950 GCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77453975 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77454000 GCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* * **
77454025 GCTCTTAATAATTCCGATTACGTTT
1 GCTCTTAATATTTCCGGTTAAATTT
* * *
77454050 TCTCTTAATATTTCTGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77454075 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77454100 GCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77454125 GCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77454150 GCCCTTATTATTTCCG
1 GCTCTTAATATTTCCG
77454166 AATAAGTTAC
Statistics
Matches: 191, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
24 1 0.01
25 190 0.99
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (25 bp):
GCTCTTAATATTTCCGGTTAAATTT
Found at i:77454000 original size:50 final size:50
Alignment explanation
Indices: 77453925--77454165 Score: 392
Period size: 50 Copynumber: 4.8 Consensus size: 50
77453915 TTGATAAATC
*
77453925 GCTCTTAATGATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTT
77453975 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTT
* ** * *
77454025 GCTCTTAATAATTCCGATTACGTTTTCTCTTAATATTTCTGGTAAAATTT
1 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTT
*
77454075 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTT
* * *
77454125 GCTCTTAATATTTCCGGTTAAATTTGCCCTTATTATTTCCG
1 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCG
77454166 AATAAGTTAC
Statistics
Matches: 176, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 176 1.00
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (50 bp):
GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTT
Found at i:77454124 original size:12 final size:12
Alignment explanation
Indices: 77454086--77454149 Score: 56
Period size: 12 Copynumber: 5.2 Consensus size: 12
77454076 CTCTTAATAA
77454086 TTCCGGTTAAAT
1 TTCCGGTTAAAT
* **
77454098 TTGCTCTTAATAT
1 TTCCGGTTAA-AT
77454111 TTCCGGTTAAAT
1 TTCCGGTTAAAT
* **
77454123 TTGCTCTTAATAT
1 TTCCGGTTAA-AT
77454136 TTCCGGTTAAAT
1 TTCCGGTTAAAT
77454148 TT
1 TT
77454150 GCCCTTATTA
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
12 20 0.53
13 18 0.47
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.48
Consensus pattern (12 bp):
TTCCGGTTAAAT
Found at i:77456019 original size:25 final size:25
Alignment explanation
Indices: 77455990--77456152 Score: 247
Period size: 25 Copynumber: 6.6 Consensus size: 25
77455980 TTGATAAATC
*
77455990 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77456015 GCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77456040 GCTCTTAATAATTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77456065 -CTCTTAATATTTTCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77456089 GCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77456114 GCTCTTAATATTTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77456139 GCCCTTATTATTTC
1 GCTCTTAATATTTC
77456153 TGAATAAGTT
Statistics
Matches: 125, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
24 21 0.17
25 104 0.83
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (25 bp):
GCTCTTAATATTTCCGGTTAAATTT
Found at i:77456088 original size:12 final size:13
Alignment explanation
Indices: 77455994--77456138 Score: 63
Period size: 12 Copynumber: 11.7 Consensus size: 13
77455984 TAAATCGCTC
*
77455994 TTAATAATTCCGG
1 TTAATATTTCCGG
* **
77456007 TTAA-ATTTGCTC
1 TTAATATTTCCGG
77456019 TTAATATTTCCGG
1 TTAATATTTCCGG
* * **
77456032 -TAAAATTTGCTC
1 TTAATATTTCCGG
* *
77456044 TTAATAATTCCGA
1 TTAATATTTCCGG
77456057 TTAA-ATTTCTC--
1 TTAATATTTC-CGG
*
77456068 TTAATATTTTCGG
1 TTAATATTTCCGG
* **
77456081 TTAA-ATTTGCTC
1 TTAATATTTCCGG
77456093 TTAATATTTCCGG
1 TTAATATTTCCGG
* **
77456106 TTAA-ATTTGCTC
1 TTAATATTTCCGG
*
77456118 TTAATATTTCCGA
1 TTAATATTTCCGG
77456131 TTAA-ATTT
1 TTAATATTT
77456139 GCCCTTATTA
Statistics
Matches: 94, Mismatches: 30, Indels: 17
0.67 0.21 0.12
Matches are distributed among these distances:
11 5 0.05
12 46 0.49
13 43 0.46
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.48
Consensus pattern (13 bp):
TTAATATTTCCGG
Found at i:77456105 original size:74 final size:74
Alignment explanation
Indices: 77455991--77456138 Score: 260
Period size: 74 Copynumber: 2.0 Consensus size: 74
77455981 TGATAAATCG
77455991 CTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCCG
1 CTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCCG
77456056 ATTAAATTT
66 ATTAAATTT
* * * *
77456065 CTCTTAATATTTTCGGTTAAATTTGCTCTTAATATTTCCGGTTAAATTTGCTCTTAATATTTCCG
1 CTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCCG
77456130 ATTAAATTT
66 ATTAAATTT
77456139 GCCCTTATTA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.28, C:0.16, G:0.09, T:0.47
Consensus pattern (74 bp):
CTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCCG
ATTAAATTT
Found at i:77458007 original size:25 final size:25
Alignment explanation
Indices: 77457978--77458141 Score: 256
Period size: 25 Copynumber: 6.6 Consensus size: 25
77457968 TTGATAAATC
*
77457978 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77458003 GCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77458028 GCTCTTAATAATTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77458053 TCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77458078 GCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77458103 GCTCTTAATATTTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77458128 GCCCTTATTATTTC
1 GCTCTTAATATTTC
77458142 TGAATAAGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 127 1.00
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (25 bp):
GCTCTTAATATTTCCGGTTAAATTT
Found at i:77458127 original size:12 final size:12
Alignment explanation
Indices: 77457989--77458127 Score: 71
Period size: 12 Copynumber: 11.2 Consensus size: 12
77457979 CTCTTAATAA
*
77457989 TTCCGGTTAAAT
1 TTCCGCTTAAAT
* *
77458001 TTGCTCTTAATAT
1 TTCCGCTTAA-AT
* *
77458014 TTCCGGTAAAAT
1 TTCCGCTTAAAT
* * *
77458026 TTGCTCTTAATAA
1 TTCCGCTTAA-AT
*
77458039 TTCCGATTAAAT
1 TTCCGCTTAAAT
* *
77458051 TTTCTCTTAATAT
1 TTCCGCTTAA-AT
*
77458064 TTCCGGTTAAAT
1 TTCCGCTTAAAT
* *
77458076 TTGCTCTTAATAT
1 TTCCGCTTAA-AT
*
77458089 TTCCGGTTAAAT
1 TTCCGCTTAAAT
* *
77458101 TTGCTCTTAATAT
1 TTCCGCTTAA-AT
*
77458114 TTCCGATTAAAT
1 TTCCGCTTAAAT
77458126 TT
1 TT
77458128 GCCCTTATTA
Statistics
Matches: 88, Mismatches: 34, Indels: 10
0.67 0.26 0.08
Matches are distributed among these distances:
12 45 0.51
13 43 0.49
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.47
Consensus pattern (12 bp):
TTCCGCTTAAAT
Found at i:77459999 original size:25 final size:25
Alignment explanation
Indices: 77459970--77460133 Score: 256
Period size: 25 Copynumber: 6.6 Consensus size: 25
77459960 TTGATAAATC
*
77459970 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77459995 GCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77460020 GCTCTTAATAATTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77460045 TCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77460070 GCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77460095 GCTCTTAATATTTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77460120 GCCCTTATTATTTC
1 GCTCTTAATATTTC
77460134 TGAATAAGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 127 1.00
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (25 bp):
GCTCTTAATATTTCCGGTTAAATTT
Found at i:77460119 original size:12 final size:12
Alignment explanation
Indices: 77459981--77460119 Score: 71
Period size: 12 Copynumber: 11.2 Consensus size: 12
77459971 CTCTTAATAA
*
77459981 TTCCGGTTAAAT
1 TTCCGCTTAAAT
* *
77459993 TTGCTCTTAATAT
1 TTCCGCTTAA-AT
* *
77460006 TTCCGGTAAAAT
1 TTCCGCTTAAAT
* * *
77460018 TTGCTCTTAATAA
1 TTCCGCTTAA-AT
*
77460031 TTCCGATTAAAT
1 TTCCGCTTAAAT
* *
77460043 TTTCTCTTAATAT
1 TTCCGCTTAA-AT
*
77460056 TTCCGGTTAAAT
1 TTCCGCTTAAAT
* *
77460068 TTGCTCTTAATAT
1 TTCCGCTTAA-AT
*
77460081 TTCCGGTTAAAT
1 TTCCGCTTAAAT
* *
77460093 TTGCTCTTAATAT
1 TTCCGCTTAA-AT
*
77460106 TTCCGATTAAAT
1 TTCCGCTTAAAT
77460118 TT
1 TT
77460120 GCCCTTATTA
Statistics
Matches: 88, Mismatches: 34, Indels: 10
0.67 0.26 0.08
Matches are distributed among these distances:
12 45 0.51
13 43 0.49
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.47
Consensus pattern (12 bp):
TTCCGCTTAAAT
Found at i:77461989 original size:25 final size:25
Alignment explanation
Indices: 77461960--77462122 Score: 256
Period size: 25 Copynumber: 6.6 Consensus size: 25
77461950 TTGATAAATC
*
77461960 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77461985 GCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77462010 GCTCTTAATAATTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77462035 -CTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77462059 GCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77462084 GCTCTTAATATTTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77462109 GCCCTTATTATTTC
1 GCTCTTAATATTTC
77462123 TGAATAAGTT
Statistics
Matches: 127, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
24 22 0.17
25 105 0.83
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (25 bp):
GCTCTTAATATTTCCGGTTAAATTT
Found at i:77462075 original size:74 final size:75
Alignment explanation
Indices: 77461960--77462122 Score: 274
Period size: 74 Copynumber: 2.2 Consensus size: 75
77461950 TTGATAAATC
*
77461960 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCC
1 GCTCTTAATATTTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCC
77462025 GATTAAATTT
66 GATTAAATTT
* *
77462035 -CTCTTAATATTTCCGGTTAAATTTGCTCTTAATATTTCCGGTTAAATTTGCTCTTAATATTTCC
1 GCTCTTAATATTTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCC
77462099 GATTAAATTT
66 GATTAAATTT
* *
77462109 GCCCTTATTATTTC
1 GCTCTTAATATTTC
77462123 TGAATAAGTT
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
74 71 0.87
75 11 0.13
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (75 bp):
GCTCTTAATATTTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCC
GATTAAATTT
Found at i:77462154 original size:99 final size:96
Alignment explanation
Indices: 77461960--77462135 Score: 208
Period size: 99 Copynumber: 1.8 Consensus size: 96
77461950 TTGATAAATC
* *
77461960 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCC
1 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGATAAAATTTGCCCTTAATAATTCC
* * * * *
77462025 GATTAAATTTCTCTTAATATTTCCGGTTAAATTT
66 GAATAAATTACTATTAAAAATT-C--TTAAATTT
* * * * *
77462059 GCTCTTAATATTTCCGGTTAAATTTGCTCTTAATATTTCCGATTAAATTTGCCCTTATTATTTCT
1 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGATAAAATTTGCCCTTAATAATTCC
*
77462124 GAATAAGTTACT
66 GAATAAATTACT
77462136 TAATTAAAGA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
99 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.46
Consensus pattern (96 bp):
GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGATAAAATTTGCCCTTAATAATTCC
GAATAAATTACTATTAAAAATTCTTAAATTT
Found at i:77463978 original size:25 final size:25
Alignment explanation
Indices: 77463949--77464112 Score: 256
Period size: 25 Copynumber: 6.6 Consensus size: 25
77463939 TTGATAAATC
*
77463949 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77463974 GCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77463999 GCTCTTAATAATTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77464024 TCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77464049 GCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77464074 GCTCTTAATATTTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77464099 GCCCTTATTATTTC
1 GCTCTTAATATTTC
77464113 TGAATAAGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 127 1.00
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (25 bp):
GCTCTTAATATTTCCGGTTAAATTT
Found at i:77464098 original size:12 final size:12
Alignment explanation
Indices: 77463960--77464098 Score: 71
Period size: 12 Copynumber: 11.2 Consensus size: 12
77463950 CTCTTAATAA
*
77463960 TTCCGGTTAAAT
1 TTCCGCTTAAAT
* *
77463972 TTGCTCTTAATAT
1 TTCCGCTTAA-AT
* *
77463985 TTCCGGTAAAAT
1 TTCCGCTTAAAT
* * *
77463997 TTGCTCTTAATAA
1 TTCCGCTTAA-AT
*
77464010 TTCCGATTAAAT
1 TTCCGCTTAAAT
* *
77464022 TTTCTCTTAATAT
1 TTCCGCTTAA-AT
*
77464035 TTCCGGTTAAAT
1 TTCCGCTTAAAT
* *
77464047 TTGCTCTTAATAT
1 TTCCGCTTAA-AT
*
77464060 TTCCGGTTAAAT
1 TTCCGCTTAAAT
* *
77464072 TTGCTCTTAATAT
1 TTCCGCTTAA-AT
*
77464085 TTCCGATTAAAT
1 TTCCGCTTAAAT
77464097 TT
1 TT
77464099 GCCCTTATTA
Statistics
Matches: 88, Mismatches: 34, Indels: 10
0.67 0.26 0.08
Matches are distributed among these distances:
12 45 0.51
13 43 0.49
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.47
Consensus pattern (12 bp):
TTCCGCTTAAAT
Found at i:77466102 original size:97 final size:98
Alignment explanation
Indices: 77465940--77466124 Score: 320
Period size: 97 Copynumber: 1.9 Consensus size: 98
77465930 TTGATAAATC
77465940 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCC
1 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCC
*
77466005 GATTAAATTTTCTCTTA-TATTTCCGGTAAATTT
66 GATTAAA-TTTCCCTTATTATTTCCGGTAAATTT
* *
77466038 GCTCTTAAT-ATTCCGGTTAAATTTGCTCTTAATATTTCCGGTTAAATTTGCTCTTAATATTTCC
1 GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCC
77466102 GATTAAATTTCCCTTATTATTTC
66 GATTAAATTTCCCTTATTATTTC
77466125 TGAATAAGTT
Statistics
Matches: 83, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
96 8 0.10
97 66 0.80
98 9 0.11
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (98 bp):
GCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATTTCCGGTAAAATTTGCTCTTAATAATTCC
GATTAAATTTCCCTTATTATTTCCGGTAAATTT
Found at i:77466122 original size:24 final size:25
Alignment explanation
Indices: 77465940--77466124 Score: 270
Period size: 25 Copynumber: 7.6 Consensus size: 25
77465930 TTGATAAATC
*
77465940 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77465965 GCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77465990 GCTCTTAATAATTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77466015 TCTCTT-ATATTTCCGG-TAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77466038 GCTCTTAATA-TTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77466062 GCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77466087 GCTCTTAATATTTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77466112 -CCCTTATTATTTC
1 GCTCTTAATATTTC
77466125 TGAATAAGTT
Statistics
Matches: 145, Mismatches: 12, Indels: 7
0.88 0.07 0.04
Matches are distributed among these distances:
23 18 0.12
24 39 0.27
25 88 0.61
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (25 bp):
GCTCTTAATATTTCCGGTTAAATTT
Found at i:77467825 original size:25 final size:25
Alignment explanation
Indices: 77467796--77467984 Score: 270
Period size: 25 Copynumber: 7.6 Consensus size: 25
77467786 TTGATAAATC
*
77467796 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77467821 GCTCTTAATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* *
77467846 GCTCTTAATAATTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* * *
77467871 TCTCTTTATATTTCCGGTAAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77467896 GCTCTTAATAATTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
77467921 GCTCTTAATATTTCCGGTTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
*
77467946 GCTCTTAATATTTCCGATTAAATTT
1 GCTCTTAATATTTCCGGTTAAATTT
* * *
77467971 TCCCTTATTATTTC
1 GCTCTTAATATTTC
77467985 TGAATAAGTT
Statistics
Matches: 145, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 145 1.00
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (25 bp):
GCTCTTAATATTTCCGGTTAAATTT
Found at i:77468883 original size:45 final size:43
Alignment explanation
Indices: 77468814--77468944 Score: 145
Period size: 45 Copynumber: 2.9 Consensus size: 43
77468804 ATATCGTACA
* * *
77468814 ATACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAT
1 ATACTATTCGGGCC-TTGAACCTAGCAGGCTATAATGCC-GTGAG
* * *
77468859 ATACTATTCGGGCCTATGACCCTAGCAGTCTATAATGCCGATTAG
1 ATACTATTCGGGCCT-TGAACCTAGCAGGCTATAATGCCG-TGAG
*
77468904 ATACTATTCGGGCCTTCGAACCTAGCAGGGTTATAATGCCG
1 ATACTATTCGGGCCTT-GAACCTAGCA-GGCTATAATGCCG
77468945 GTGAAATGAT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
44 3 0.04
45 60 0.81
46 11 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (43 bp):
ATACTATTCGGGCCTTGAACCTAGCAGGCTATAATGCCGTGAG
Found at i:77473794 original size:40 final size:39
Alignment explanation
Indices: 77473710--77473934 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 39
77473700 TTGAATGATG
* * * *
77473710 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
77473750 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
77473790 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
77473829 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
77473869 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
77473910 -CCGGGCTATA-TCCCGAAGGCATTTG
1 TCCGGGCTA-AGT-CCGAAGGCATTTG
77473935 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
39 35 0.21
40 117 0.72
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77481206 original size:50 final size:49
Alignment explanation
Indices: 77481118--77481308 Score: 262
Period size: 50 Copynumber: 3.9 Consensus size: 49
77481108 AATTTAAAGC
*
77481118 TTGAT-AAA-TTGCTCTTAATAA-TCCAGTTAAATTTGCTCTTAATATT
1 TTGATAAAATTTGCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATT
*
77481164 TCTGATAAAATTTGCTCTTAATAATTCTGGTTAAATTTGCTCTTAATATT
1 T-TGATAAAATTTGCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATT
*
77481214 TTTAGTAAAATTTGCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATT
1 TTGA-TAAAATTTGCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATT
* * * * *
77481264 TTCGGTTAAATTTGCTCTTAATATTTCTGGTTAAATTTGCCCTTA
1 TT-GATAAAATTTGCTCTTAATAATTCCGGTTAAATTTGCTCTTA
77481309 TTGTTTCCGA
Statistics
Matches: 129, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
46 1 0.01
47 4 0.03
48 3 0.02
49 15 0.12
50 106 0.82
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (49 bp):
TTGATAAAATTTGCTCTTAATAATTCCGGTTAAATTTGCTCTTAATATT
Found at i:77481315 original size:25 final size:25
Alignment explanation
Indices: 77481122--77481308 Score: 236
Period size: 25 Copynumber: 7.6 Consensus size: 25
77481112 TAAAGCTTGA
* **
77481122 TAAA-TTGCTCTTAATA-ATCCAGT
1 TAAATTTGCTCTTAATATTTCTGGT
*
77481145 TAAATTTGCTCTTAATATTTCTGAT
1 TAAATTTGCTCTTAATATTTCTGGT
* *
77481170 AAAATTTGCTCTTAATAATTCTGGT
1 TAAATTTGCTCTTAATATTTCTGGT
* *
77481195 TAAATTTGCTCTTAATATTTTTAGT
1 TAAATTTGCTCTTAATATTTCTGGT
* * *
77481220 AAAATTTGCTCTTAATAATTCCGGT
1 TAAATTTGCTCTTAATATTTCTGGT
77481245 TAAATTTGCTCTTAATATTT-TCGGT
1 TAAATTTGCTCTTAATATTTCT-GGT
77481270 TAAATTTGCTCTTAATATTTCTGGT
1 TAAATTTGCTCTTAATATTTCTGGT
*
77481295 TAAATTTGCCCTTA
1 TAAATTTGCTCTTA
77481309 TTGTTTCCGA
Statistics
Matches: 140, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
23 4 0.03
24 12 0.09
25 123 0.88
26 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (25 bp):
TAAATTTGCTCTTAATATTTCTGGT
Found at i:77482209 original size:45 final size:45
Alignment explanation
Indices: 77482145--77482364 Score: 349
Period size: 45 Copynumber: 5.0 Consensus size: 45
77482135 TATCGTGCAG
77482145 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
*
77482190 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
*
77482235 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
*
77482280 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
77482325 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCAGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
77482365 ATAAATTCGG
Statistics
Matches: 166, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
42 10 0.06
43 17 0.10
44 5 0.03
45 133 0.80
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
Found at i:77483709 original size:16 final size:15
Alignment explanation
Indices: 77483685--77483714 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
77483675 AACTATTTTA
77483685 TTACAAATTTCACTC
1 TTACAAATTTCACTC
77483700 TTACATAATTTCACT
1 TTACA-AATTTCACT
77483715 TACTTCAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:77487381 original size:27 final size:27
Alignment explanation
Indices: 77487351--77487528 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77487341 ATATTGAGTC
* * * *
77487351 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77487378 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77487405 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77487433 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77487460 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77487487 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77487514 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77487529 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77487490 original size:82 final size:81
Alignment explanation
Indices: 77487372--77487527 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77487362 TGCTATATAA
* *
77487372 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
77487437 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
77487454 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
77487518 CACTTAGTGC
65 CACTTAGTGC
77487528 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77493395 original size:4 final size:4
Alignment explanation
Indices: 77493374--77493406 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
77493364 TTATGGTTTT
*
77493374 TTAA TT-A TTAA GTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
77493407 GAAGTTCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:77493555 original size:17 final size:17
Alignment explanation
Indices: 77493533--77493565 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
77493523 TAGAATTGGG
77493533 TTGAGAAAATTATTTAA
1 TTGAGAAAATTATTTAA
*
77493550 TTGAGAAATTTATTTA
1 TTGAGAAAATTATTTA
77493566 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (17 bp):
TTGAGAAAATTATTTAA
Found at i:77496837 original size:20 final size:22
Alignment explanation
Indices: 77496814--77496855 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
77496804 TAATAACTTT
77496814 AATAATTTT-TAAT-TTTAAAA
1 AATAATTTTATAATATTTAAAA
77496834 AATAATTTTATAATATTTAAAA
1 AATAATTTTATAATATTTAAAA
77496856 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
21 4 0.20
22 7 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AATAATTTTATAATATTTAAAA
Found at i:77497173 original size:30 final size:29
Alignment explanation
Indices: 77497133--77497197 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 29
77497123 CAATTATAAC
*
77497133 TATATATATAAATATATATTACATTTTGGG
1 TATATTTATAAATATATATTACA-TTTGGG
*
77497163 TATATTTATAAATATTTATTACATTTGGG
1 TATATTTATAAATATATATTACATTTGGG
*
77497192 TTTATT
1 TATATT
77497198 ATATTTTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 11 0.34
30 21 0.66
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.52
Consensus pattern (29 bp):
TATATTTATAAATATATATTACATTTGGG
Found at i:77500874 original size:46 final size:45
Alignment explanation
Indices: 77500821--77500983 Score: 166
Period size: 46 Copynumber: 3.5 Consensus size: 45
77500811 TCACTAGGAT
* *
77500821 AGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGC-AAAGTCCGAGCTCGTTG
*** * * * *
77500867 AGTTGAGTCCGAGTTCGAGAGATGTA-GCTAGGCATCCGAGCTCATTG
1 AGTTGAGTCCGAGTTC-ACTTATGGATGCAAAG--TCCGAGCTCGTTG
* **
77500914 AGTTGAGTCTGAGTTCACTTATGGATGCAAACACTCGAGCTCGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCAAAGTC-CGAGCTCGTTG
77500960 AGTTGAGTCCGAGTTCACTTATGG
1 AGTTGAGTCCGAGTTCACTTATGG
77500984 GCGTGTTACA
Statistics
Matches: 93, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
45 3 0.03
46 56 0.60
47 34 0.37
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (45 bp):
AGTTGAGTCCGAGTTCACTTATGGATGCAAAGTCCGAGCTCGTTG
Found at i:77504000 original size:30 final size:30
Alignment explanation
Indices: 77503931--77504018 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
77503921 CATAGTATCG
* * * * *
77503931 TATCTTGGGTTTCTTTATCCTGAATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
77503961 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
77503991 TATCTTGGATTTCTTTATT-TGGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
77504019 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.80
31 1 0.02
ACGTcount: A:0.11, C:0.16, G:0.15, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:77504017 original size:14 final size:15
Alignment explanation
Indices: 77503940--77504019 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
77503930 GTATCTTGGG
* *
77503940 TTTCTTTATCCTGAA
1 TTTCTTTATTCTGGA
*
77503955 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
77503970 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
77503985 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
77504000 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
77504014 TTTCTT
1 TTTCTT
77504020 GTTATCTTTG
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 11 0.20
15 42 0.78
16 1 0.02
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:77508168 original size:46 final size:46
Alignment explanation
Indices: 77508034--77508253 Score: 148
Period size: 46 Copynumber: 4.7 Consensus size: 46
77508024 GCATATTTGT
* *
77508034 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACACATCGTGT--A-
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAG-CAC-TCGTCTCGAG
* * * *
77508080 GCTGATTCATGTCCCAGACATGTCTTACACTGGCTTA-T-GTCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGC--ACTCGTCTCGAG
* * * *
77508126 GCCGAAGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCGAG
* * * * * * *
77508172 GTCGATGCCATGTCCCAAAAATGGTCTTACACTTGCTCTCATAAT-GCG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCGT-CTCGAG
*
77508220 GCCGATGCATGTCCCAAACATTTCTTACACTAGC
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGC
77508254 TCACAATAAC
Statistics
Matches: 139, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
43 3 0.02
44 13 0.09
45 17 0.12
46 58 0.42
47 25 0.18
48 22 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCGAG
Found at i:77510415 original size:21 final size:20
Alignment explanation
Indices: 77510390--77510474 Score: 55
Period size: 22 Copynumber: 4.0 Consensus size: 20
77510380 AATAATACAT
*
77510390 TAAATATTTACAATATTAAATA
1 TAAATATTTA-AAT-TAAAATA
*
77510412 -AAATGTTTAAATTAAAATA
1 TAAATATTTAAATTAAAATA
* * *
77510431 TAAATAAAATAAAATTTAAATACA
1 TAAAT--ATTTAAA-TTAAA-ATA
77510455 TAAATATATTAAATTAAAAT
1 TAAATAT-TTAAATTAAAAT
77510475 TATTAAATGA
Statistics
Matches: 48, Mismatches: 9, Indels: 13
0.69 0.13 0.19
Matches are distributed among these distances:
19 6 0.12
20 7 0.15
21 9 0.19
22 10 0.21
23 9 0.19
24 7 0.15
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.36
Consensus pattern (20 bp):
TAAATATTTAAATTAAAATA
Found at i:77510443 original size:16 final size:16
Alignment explanation
Indices: 77510419--77510474 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
77510409 ATAAAATGTT
*
77510419 TAAATTAAAATATAAA
1 TAAAATAAAATATAAA
*
77510435 TAAAATAAAATTTAAA
1 TAAAATAAAATATAAA
*
77510451 T-ACATAAATATATTAAA
1 TAAAATAAA-ATA-TAAA
77510468 TTAAAAT
1 -TAAAAT
77510475 TATTAAATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 6 0.19
16 17 0.55
17 4 0.13
18 1 0.03
19 3 0.10
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (16 bp):
TAAAATAAAATATAAA
Found at i:77510468 original size:28 final size:28
Alignment explanation
Indices: 77510402--77510475 Score: 71
Period size: 28 Copynumber: 2.5 Consensus size: 28
77510392 AATATTTACA
77510402 ATATTAAATAAAATGTTTAAATTAAAATAT
1 ATATTAAATAAAA--TTTAAATTAAAATAT
* *
77510432 AAATAAAATAAAATTTAAA-TACATAA-AT
1 ATATTAAATAAAATTTAAATTA-A-AATAT
77510460 ATATTAAATTAAAATT
1 ATATTAAA-TAAAATT
77510476 ATTAAATGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.05
28 15 0.41
29 9 0.24
30 11 0.30
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (28 bp):
ATATTAAATAAAATTTAAATTAAAATAT
Found at i:77512065 original size:21 final size:21
Alignment explanation
Indices: 77512025--77512065 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
77512015 TTTTTATTTG
*
77512025 TTAATGTGATATCTTACATAA
1 TTAATGTGATATCATACATAA
77512046 TTAATGT-ATATCATATCATA
1 TTAATGTGATATCATA-CATA
77512066 TTTTCCTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (21 bp):
TTAATGTGATATCATACATAA
Found at i:77516033 original size:27 final size:27
Alignment explanation
Indices: 77516003--77516058 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
77515993 AATCATACAC
*
77516003 CACATAGGGGCAAAACAGTCATTTTAT
1 CACATAGGGGCAAAACAATCATTTTAT
* *
77516030 CACATAGGGGTATAACAATCATTTTAT
1 CACATAGGGGCAAAACAATCATTTTAT
77516057 CA
1 CA
77516059 ATTAGAGGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (27 bp):
CACATAGGGGCAAAACAATCATTTTAT
Found at i:77516204 original size:17 final size:18
Alignment explanation
Indices: 77516173--77516206 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
77516163 CATATTGCAG
77516173 GCCCGTGTGGGCCCACAT
1 GCCCGTGTGGGCCCACAT
77516191 GCCCGTGT-GGCCCACA
1 GCCCGTGTGGGCCCACA
77516207 CGGCCAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.12, C:0.41, G:0.32, T:0.15
Consensus pattern (18 bp):
GCCCGTGTGGGCCCACAT
Found at i:77522321 original size:42 final size:42
Alignment explanation
Indices: 77522275--77522367 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
77522265 CTTACATGAT
* *
77522275 TCTCATATCGATGCCATGTCCCAAACATGGTCTTACACAAAA
1 TCTCATAACGATGCCATATCCCAAACATGGTCTTACACAAAA
* * * *
77522317 TCTCATAACGATGTCATATCCCAGATATGGTCTTACACGTAAA
1 TCTCATAACGATGCCATATCCCAAACATGGTCTTACAC-AAAA
77522360 -CTCATAAC
1 TCTCATAAC
77522368 CCTAATGTCA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
42 41 0.93
43 3 0.07
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (42 bp):
TCTCATAACGATGCCATATCCCAAACATGGTCTTACACAAAA
Found at i:77525454 original size:16 final size:16
Alignment explanation
Indices: 77525430--77525465 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
77525420 AGACACGAGA
77525430 GCTACGAGATAAACTG
1 GCTACGAGATAAACTG
*
77525446 GCTATGAGATAAACTG
1 GCTACGAGATAAACTG
77525462 GCTA
1 GCTA
77525466 GGTCACATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (16 bp):
GCTACGAGATAAACTG
Found at i:77529021 original size:57 final size:57
Alignment explanation
Indices: 77528933--77529041 Score: 191
Period size: 57 Copynumber: 1.9 Consensus size: 57
77528923 AAGCTAAAAC
* *
77528933 TCACTGTTACTAAACTTATCATACAACTATTTATCTCTCAAATTTTGTAAAATGGAA
1 TCACTGTTACTAAACTTAGCATACAACTATTTATCTCTCAAAGTTTGTAAAATGGAA
*
77528990 TCACTTTTACTAAACTTAGCATACAACTATTTATCTCTCAAAGTTTGTAAAA
1 TCACTGTTACTAAACTTAGCATACAACTATTTATCTCTCAAAGTTTGTAAAA
77529042 CGATTATCAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (57 bp):
TCACTGTTACTAAACTTAGCATACAACTATTTATCTCTCAAAGTTTGTAAAATGGAA
Found at i:77532234 original size:42 final size:42
Alignment explanation
Indices: 77532188--77532341 Score: 159
Period size: 42 Copynumber: 3.7 Consensus size: 42
77532178 AATCATACCA
*
77532188 ATGCCATATCCTAGATATGGTCTTACATAAGATCTCATAACG
1 ATGCCATATCCCAGATATGGTCTTACATAAGATCTCATAACG
* * ** *
77532230 ATGCCAATAGCCCAAATATGGTCTTAC--CCGATTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATAAGA-TCTCATAACG
* * * * *
77532272 ATGCCATGTCCCAGATATGGTTTTACACAAAATCTCATAATG
1 ATGCCATATCCCAGATATGGTCTTACATAAGATCTCATAACG
* *
77532314 ATGCCATATCCCAGATTTGGTATTACAT
1 ATGCCATATCCCAGATATGGTCTTACAT
77532342 GTAAATTCAT
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 19 0.21
42 51 0.57
43 19 0.21
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATAAGATCTCATAACG
Found at i:77532352 original size:84 final size:84
Alignment explanation
Indices: 77532188--77532340 Score: 191
Period size: 84 Copynumber: 1.8 Consensus size: 84
77532178 AATCATACCA
* * * *
77532188 ATGCCATATCCTAGATATGGTCTTACATAAGATCTCATAACGATGCCAATAGCCCAAATATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAACGATGCCAATAGCCCAAATATGGTA
* *
77532253 TTACCCGATTCTCATATCG
66 TTACACGAATCTCATATCG
* * * * * *
77532272 ATGCCATGTCCCAGATATGGTTTTACACAAAATCTCATAATGATGCC-ATATCCCAGATTTGGTA
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAACGATGCCAATAGCCCAAATATGGTA
77532336 TTACA
66 TTACA
77532341 TGTAAATTCA
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
83 17 0.29
84 41 0.71
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAACGATGCCAATAGCCCAAATATGGTA
TTACACGAATCTCATATCG
Found at i:77534175 original size:35 final size:35
Alignment explanation
Indices: 77534135--77534212 Score: 147
Period size: 35 Copynumber: 2.2 Consensus size: 35
77534125 TCGTGAAAAA
*
77534135 AAAGAAAAGGAACAAAAAAAGAGCATATGTACTTG
1 AAAGAAAAAGAACAAAAAAAGAGCATATGTACTTG
77534170 AAAGAAAAAGAACAAAAAAAGAGCATATGTACTTG
1 AAAGAAAAAGAACAAAAAAAGAGCATATGTACTTG
77534205 AAAGAAAA
1 AAAGAAAA
77534213 TAGATATACA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.62, C:0.08, G:0.18, T:0.13
Consensus pattern (35 bp):
AAAGAAAAAGAACAAAAAAAGAGCATATGTACTTG
Found at i:77537500 original size:40 final size:40
Alignment explanation
Indices: 77537433--77537679 Score: 277
Period size: 40 Copynumber: 6.2 Consensus size: 40
77537423 CCTTCGGAGT
** * *
77537433 TTAG-CCGGATATAGCCACTACCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* * *
77537472 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGAGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
77537512 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* * * *
77537551 TTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
77537591 TTAGCCCGGATATAGTAGCTAGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* ** *
77537631 TTAGCCC-GAAATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCT-TCGGGAC
77537671 TTAGCCCGG
1 TTAGCCCGG
77537680 TTATCATCCG
Statistics
Matches: 181, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 45 0.25
40 135 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:77537554 original size:79 final size:80
Alignment explanation
Indices: 77537456--77537638 Score: 269
Period size: 79 Copynumber: 2.3 Consensus size: 80
77537446 GCCACTACCT
* * * *
77537456 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGAGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGAGACTTAGCCCGG
*
77537521 -TATAATAACTCGCA
66 ATATAATAACTAGCA
* *
77537535 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGAGACTTAGCCCGG
* *
77537600 ATATAGTAGCTAGCA
66 ATATAATAACTAGCA
*
77537615 CGAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
77537639 AAATTAGCCA
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 59 0.63
80 34 0.37
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGAGACTTAGCCCGG
ATATAATAACTAGCA
Found at i:77543952 original size:118 final size:121
Alignment explanation
Indices: 77543746--77544009 Score: 360
Period size: 118 Copynumber: 2.2 Consensus size: 121
77543736 GCTACTCGTT
* * *
77543746 CAAATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
77543811 TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
66 ATATAGTAACTCGCACAAATGCCTTC-GGATCTTAGCCCGGATATAGTAACTTAGCA
* * *
77543866 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGTACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
77543929 A-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
66 ATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTTAGCA
77543985 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77544010 CATCATTCAA
Statistics
Matches: 128, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
117 4 0.03
118 69 0.54
119 31 0.24
120 24 0.19
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTTAGCA
Found at i:77544009 original size:40 final size:40
Alignment explanation
Indices: 77543727--77544009 Score: 362
Period size: 40 Copynumber: 7.1 Consensus size: 40
77543717 CGGAATTTAA
** *
77543727 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77543767 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77543807 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77543847 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77543887 CCGGAT-TAGTAACTCGTACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77543925 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
77543965 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77544005 CCGGA
1 CCGGA
77544010 CATCATTCAA
Statistics
Matches: 218, Mismatches: 17, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
38 12 0.06
39 46 0.21
40 148 0.68
41 12 0.06
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77552064 original size:117 final size:119
Alignment explanation
Indices: 77551891--77552110 Score: 306
Period size: 117 Copynumber: 1.9 Consensus size: 119
77551881 TACTCGTTCA
* *
77551891 AATGCCTTCGGGACATAGCCCGGTTATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
1 AATGCCTTCGGGACATAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
*
77551956 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 TAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
77552010 AATGCCTTC-GG-CTTAGCCCGGA-ATTAGTACTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGA
* * *
77552071 TATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 TATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
77552111 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
116 4 0.04
117 67 0.74
118 10 0.11
119 9 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
TAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:77552094 original size:77 final size:80
Alignment explanation
Indices: 77551889--77552110 Score: 251
Period size: 77 Copynumber: 2.8 Consensus size: 80
77551879 GCTACTCGTT
* * * *
77551889 CAAATGCCTTCGGGACATAGCCCGGTTATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
77551953 -TTATAGTAACTCGCA
65 AATATAGTAACTCGCA
* * *
77551968 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTC-GG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
77552031 AAT-TAGT-ACTCGCA
65 AATATAGTAACTCGCA
** * *
77552045 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
77552109 GA
64 GA
77552111 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
76 3 0.02
77 42 0.34
78 20 0.16
79 42 0.34
80 13 0.11
81 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATATAGTAACTCGCA
Found at i:77552110 original size:40 final size:39
Alignment explanation
Indices: 77551870--77552110 Score: 285
Period size: 40 Copynumber: 6.1 Consensus size: 39
77551860 CGGAATTTAA
** *
77551870 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGC
*
77551910 CCGGTTATAGTACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
* *
77551949 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
* *
77551989 CCGGATTTAGTAACTCGCACCAATGCCTTC-GG-CTTAGC
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
*
77552027 CCGGA-ATTAGTACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
77552066 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGC
77552106 CCGGA
1 CCGGA
77552111 CATCATTCAA
Statistics
Matches: 178, Mismatches: 15, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
37 19 0.11
38 14 0.08
39 52 0.29
40 82 0.46
41 11 0.06
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77556973 original size:18 final size:18
Alignment explanation
Indices: 77556936--77556974 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
77556926 TTGGAAATCA
*
77556936 AAATAATTAAAAGATGAT
1 AAATAATTAAAAGATAAT
77556954 AAATAATTAAATAGA-AAT
1 AAATAATTAAA-AGATAAT
77556972 AAA
1 AAA
77556975 AATCATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.26
Consensus pattern (18 bp):
AAATAATTAAAAGATAAT
Found at i:77557730 original size:17 final size:17
Alignment explanation
Indices: 77557708--77557748 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
77557698 AAAATGTATC
**
77557708 TGATAAAGCCCGATCAA
1 TGATAAAGCCCGAAAAA
*
77557725 TGATAATGCCCGAAAAA
1 TGATAAAGCCCGAAAAA
77557742 TGATAAA
1 TGATAAA
77557749 TGGTAAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.20
Consensus pattern (17 bp):
TGATAAAGCCCGAAAAA
Found at i:77559549 original size:28 final size:27
Alignment explanation
Indices: 77559492--77559588 Score: 131
Period size: 27 Copynumber: 3.6 Consensus size: 27
77559482 TAAATTGTGC
* *
77559492 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
77559519 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
* * *
77559547 AGCACTAGGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
77559574 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77559589 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 37 0.60
28 25 0.40
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:77561431 original size:57 final size:57
Alignment explanation
Indices: 77561355--77561490 Score: 141
Period size: 57 Copynumber: 2.4 Consensus size: 57
77561345 TTATGGATTA
* * * *
77561355 GATTTAACCCAGACAGGTAATCCAAA-TCAAGCTCT-TTAGAGCATATGTCATAAAAAG
1 GATTTAGCCTAGACTGGTAATCCAAACT-AAGCTCTATT-GAGCATATATCATAAAAAG
* ** * ** *
77561412 GATTTAGCTTAGACTGGTAATCCTGACTAAGCTCTATTGAGTATATATTGTAGAAAG
1 GATTTAGCCTAGACTGGTAATCCAAACTAAGCTCTATTGAGCATATATCATAAAAAG
77561469 GATTTAGCCTAGACTGGTAATC
1 GATTTAGCCTAGACTGGTAATC
77561491 ATGTTGTTTA
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
57 62 0.95
58 3 0.05
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (57 bp):
GATTTAGCCTAGACTGGTAATCCAAACTAAGCTCTATTGAGCATATATCATAAAAAG
Found at i:77561889 original size:14 final size:14
Alignment explanation
Indices: 77561870--77561898 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
77561860 TAATCTGTAC
77561870 TCGAGATGAACTAT
1 TCGAGATGAACTAT
77561884 TCGAGATGAACTAT
1 TCGAGATGAACTAT
77561898 T
1 T
77561899 TTGAAACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (14 bp):
TCGAGATGAACTAT
Found at i:77562690 original size:30 final size:30
Alignment explanation
Indices: 77562656--77562754 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
77562646 CACATAGGTA
* *
77562656 GACACATGGGCGTGTGTCATGACCGTGTGT
1 GACACACGGGCGTGTGTCATGACTGTGTGT
77562686 GACACACGGGCGTGTGTCATGACTGTGTGT
1 GACACACGGGCGTGTGTCATGACTGTGTGT
*
77562716 GACACACGGGTGTGTGTCATGACTGTGTGT
1 GACACACGGGCGTGTGTCATGACTGTGTGT
77562746 GACACACGG
1 GACACACGG
77562755 CCTAGTACAC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.18, C:0.20, G:0.36, T:0.25
Consensus pattern (30 bp):
GACACACGGGCGTGTGTCATGACTGTGTGT
Found at i:77562715 original size:15 final size:15
Alignment explanation
Indices: 77562697--77562746 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
77562687 ACACACGGGC
77562697 GTGTGTCATGACTGT
1 GTGTGTCATGACTGT
* * *
77562712 GTGTGACA-CACGGGT
1 GTGTGTCATGAC-TGT
77562727 GTGTGTCATGACTGT
1 GTGTGTCATGACTGT
77562742 GTGTG
1 GTGTG
77562747 ACACACGGCC
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
14 2 0.07
15 23 0.85
16 2 0.07
ACGTcount: A:0.14, C:0.14, G:0.38, T:0.34
Consensus pattern (15 bp):
GTGTGTCATGACTGT
Found at i:77566919 original size:18 final size:18
Alignment explanation
Indices: 77566868--77566920 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
77566858 GGCTAAGGAC
77566868 TAAATTAGAAATCAAAATAAT
1 TAAA-TAGAAAT--AAATAAT
*
77566889 TAAA-AGATGATAAATAAT
1 TAAATAGA-AATAAATAAT
77566907 TAAATAGAAATAAA
1 TAAATAGAAATAAA
77566921 AATCATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 16 0.57
19 6 0.21
20 2 0.07
21 4 0.14
ACGTcount: A:0.64, C:0.02, G:0.08, T:0.26
Consensus pattern (18 bp):
TAAATAGAAATAAATAAT
Found at i:77576964 original size:41 final size:41
Alignment explanation
Indices: 77576907--77576988 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
77576897 TGAGTAAGGT
77576907 TTTCGACTATGGTAGTTAATAATGGTGAGTTTTGTTGTTTC
1 TTTCGACTATGGTAGTTAATAATGGTGAGTTTTGTTGTTTC
77576948 TTTCGACTATGGTAGTTAATAATGGTGAGTTTTGTTGTTTC
1 TTTCGACTATGGTAGTTAATAATGGTGAGTTTTGTTGTTTC
77576989 ATGTTAAAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.20, C:0.07, G:0.24, T:0.49
Consensus pattern (41 bp):
TTTCGACTATGGTAGTTAATAATGGTGAGTTTTGTTGTTTC
Found at i:77578260 original size:40 final size:40
Alignment explanation
Indices: 77578205--77578382 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
77578195 CGGATGATAA
* * *
77578205 CCGGGTTAAGTCCCGAAGGCAATTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA-T
* *
77578245 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
*
77578285 CCGGGCTAAGTCCCGAAGGC-ATCTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCAAT-TGTGCGAGTTACTATAT
* * *
77578325 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTATAT
* *
77578365 CC-GGCTAAATCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77578383 TACTTGGTTT
Statistics
Matches: 120, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 17 0.14
40 101 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
Found at i:77584286 original size:128 final size:128
Alignment explanation
Indices: 77584058--77584310 Score: 479
Period size: 128 Copynumber: 2.0 Consensus size: 128
77584048 TGAAATCTCC
77584058 GAACGAGTTGGTCCAGTTGCATATAGGTTGCTTTTACCCCCTGAACTTGAAAGGATTCACAACGT
1 GAACGAGTTGGTCCAGTTGCATATAGGTTGCTTTTACCCCCTGAACTTGAAAGGATTCACAACGT
*
77584123 TTTTCATGTTTCGATGCTTCGACGTTACAGATCTGATCCTTCGCACATAATTAGTCCATCTTA
66 TTTTCATGTTTCGATGCTTCGACGTTACAGATCTGATCCTTCACACATAATTAGTCCATCTTA
* *
77584186 GAACGAGTTGGTCCAGTTGCATATAGGTTGCTTTTACTCCCTGAACTTGAAAGGATTCACAATGT
1 GAACGAGTTGGTCCAGTTGCATATAGGTTGCTTTTACCCCCTGAACTTGAAAGGATTCACAACGT
77584251 TTTTCATGTTTCGATGCTTCGACGTTACAGATCTGATCCTTCACACATAATTAGTCCATC
66 TTTTCATGTTTCGATGCTTCGACGTTACAGATCTGATCCTTCACACATAATTAGTCCATC
77584311 AGAGGTTGAA
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 122 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (128 bp):
GAACGAGTTGGTCCAGTTGCATATAGGTTGCTTTTACCCCCTGAACTTGAAAGGATTCACAACGT
TTTTCATGTTTCGATGCTTCGACGTTACAGATCTGATCCTTCACACATAATTAGTCCATCTTA
Found at i:77586529 original size:40 final size:40
Alignment explanation
Indices: 77586471--77586687 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
77586461 GGATGATAAT
* *
77586471 CGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA-TC
* * *
77586511 CGGGCTAAGCCCCAAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATATC
*
77586551 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATATC
* *
77586591 CGGGCTAAGTCCCGAAGGC-ATCTGTGCAAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCAAT-TGTGCGAGTTACTATATC
* *
77586631 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTATATC
* *
77586671 C-GACTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
77586688 TACTTGGTTT
Statistics
Matches: 157, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 17 0.11
40 138 0.88
41 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATATC
Found at i:77591549 original size:30 final size:30
Alignment explanation
Indices: 77591492--77591549 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
77591482 TTTTCGAGCA
**
77591492 TAGGGGCAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
77591522 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
77591550 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:77591960 original size:47 final size:45
Alignment explanation
Indices: 77591889--77592251 Score: 241
Period size: 47 Copynumber: 7.8 Consensus size: 45
77591879 TGATTTGTGC
* * *
77591889 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATAAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
* *
77591935 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGAGA
* * * * *
77591983 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
* * * *
77592029 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGACACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAGATGAGA
* *
77592077 GCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGATGAGA
* * ** * * * * * *
77592124 GCCAGTGTAATACGTGTCTGGGACACACACCTGCTA-A-AAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGA
* * * *
77592168 GCTAGTGTAAGACATGTTTGGGACATGCATCAG-CAGGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA--C--AGATGAGA
*
77592216 GCCAGTGTAAGACCATGTCTAGGACATAGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
77592252 AATATATCCC
Statistics
Matches: 241, Mismatches: 54, Indels: 39
0.72 0.16 0.12
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 26 0.11
45 1 0.00
46 39 0.16
47 88 0.37
48 58 0.24
49 19 0.08
50 6 0.02
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGA
Found at i:77592054 original size:94 final size:93
Alignment explanation
Indices: 77591892--77592252 Score: 335
Period size: 94 Copynumber: 3.9 Consensus size: 93
77591882 TTTGTGCGCC
* * * * * *
77591892 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATAAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTAG
* *
77591957 GACATGGCATCGGCATCCAGACGAGGGCT
66 GACATGGCATCGGCAT-CAGAAGAGTGCT
*
77591986 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTAG
* *
77592051 GACATGGCATCGACA-CAGAGATGAGTGCC
66 GACATGGCATCGGCATCAGA-A-GAGTGCT
* * * *
77592080 AATGTAAGACATGTCTGGGACATGCATCGGCC-TCGAC-A-GAGATAGCCAGTGTAATA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCATGT
* ** * * * *
77592141 CTGGGACA-CACACCTGC-T-AAAAGTTGTGCT
62 CTAGGACATGGCATCGGCATCAGAAG-AGTGCT
* *
77592171 AGTGTAAGACATGTTTGGGACATGCATCAGCAGGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC---CATACTATGAGAGCCAGTGTAAGACCATGTC
*
77592235 TAGGACATAGCATCGGCA
63 TAGGACATGGCATCGGCA
77592253 ATATATCCCA
Statistics
Matches: 215, Mismatches: 35, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
90 1 0.00
91 33 0.15
92 18 0.08
93 20 0.09
94 128 0.60
95 15 0.07
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTAG
GACATGGCATCGGCATCAGAAGAGTGCT
Found at i:77608679 original size:41 final size:43
Alignment explanation
Indices: 77608634--77608714 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
77608624 TAGACACTCC
*
77608634 CGTGTCT-TAGGACGTGTG-GACACACGGTAAGGCCACACAGG
1 CGTGTCTATAGGACGTGTGAGACACACAGTAAGGCCACACAGG
* * *
77608675 CGTGTCTATTGGTCGTGTGAGACACACAGTCAGGCCACAC
1 CGTGTCTATAGGACGTGTGAGACACACAGTAAGGCCACAC
77608715 TCGAAATGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 7 0.21
42 9 0.26
43 18 0.53
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.20
Consensus pattern (43 bp):
CGTGTCTATAGGACGTGTGAGACACACAGTAAGGCCACACAGG
Found at i:77618008 original size:29 final size:29
Alignment explanation
Indices: 77617945--77618012 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
77617935 TAATCAACCA
77617945 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* * **
77617974 CACACACTTAGTGTCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
77618003 CGCACACTTA
1 CGCACACTTA
77618013 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:77618153 original size:29 final size:30
Alignment explanation
Indices: 77618114--77618192 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
77618104 CTTAATAATC
77618114 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
77618144 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
77618173 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
77618193 ATCTCATGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:77629212 original size:40 final size:40
Alignment explanation
Indices: 77629168--77629435 Score: 335
Period size: 40 Copynumber: 6.7 Consensus size: 40
77629158 GCCACTAGCT
*
77629168 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
77629208 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
77629248 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
77629287 CAAATGCTTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
77629327 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * ** * *
77629367 CGAATACCTTCGGGACTTAGCCCGG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
77629407 CAAATG-CTCTCGGGACTTAGCCCAGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
77629436 CATCCGAACA
Statistics
Matches: 204, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
39 39 0.19
40 164 0.80
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:77629293 original size:79 final size:80
Alignment explanation
Indices: 77629168--77629392 Score: 335
Period size: 79 Copynumber: 2.8 Consensus size: 80
77629158 GCCACTAGCT
* *
77629168 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
77629233 TTATAGTAACTTGCA
66 ATATAATAACTCGCA
* *
77629248 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCACAAATGCTTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
77629312 ATATAATAGCTCGCA
66 ATATAATAACTCGCA
* * * *
77629327 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATACCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
77629392 A
66 A
77629393 ATTAGCCACT
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
79 71 0.54
80 60 0.46
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:77629346 original size:119 final size:120
Alignment explanation
Indices: 77629161--77629429 Score: 360
Period size: 119 Copynumber: 2.2 Consensus size: 120
77629151 GGATATAGCC
* * * * * *
77629161 ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCTTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTT
* * * * *
77629226 AGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGTA-TAATA
66 AGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAATTAACA
* *
77629280 ACTCGCACAAATGCTTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTT
1 ACTAGCACAAATGCTTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTT
* * * *
77629345 AGCCCGGATATAGTAGCTCGCACGAATACCTTCGGGACTTAGCCCGGAATTAGCC
66 AGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAATTAACA
* *
77629400 ACTAGCTCAAATGCTCTCGGGACTTAGCCC
1 ACTAGCACAAATGCTTTCGGGACTTAGCCC
77629430 AGTTATCATC
Statistics
Matches: 129, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
119 100 0.78
120 29 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
ACTAGCACAAATGCTTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTT
AGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGGAATTAACA
Found at i:77632795 original size:40 final size:39
Alignment explanation
Indices: 77632750--77632922 Score: 238
Period size: 40 Copynumber: 4.3 Consensus size: 39
77632740 ATCCAATGTT
**
77632750 CCATTTCATATATCTATTTCTATATAATCGCCTCATATAA
1 CCATTTCATATATCTATTT-TATATAATCGATTCATATAA
* *
77632790 TCATTTCATATATCTATTTCTATATAATTGATTCATATAA
1 CCATTTCATATATCTATTT-TATATAATCGATTCATATAA
*
77632830 CCATTTCATATATCTACTTTTATATAATCAATTCATATAA
1 CCATTTCATATATCTA-TTTTATATAATCGATTCATATAA
* *
77632870 CCATTTCATATATCTATTTTCGTATAATTGATTCATATAA
1 CCATTTCATATATCTATTTT-ATATAATCGATTCATATAA
*
77632910 CTATTTCATATAT
1 CCATTTCATATAT
77632923 TAAATTTTCA
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 4 0.03
40 113 0.94
41 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.02, T:0.47
Consensus pattern (39 bp):
CCATTTCATATATCTATTTTATATAATCGATTCATATAA
Found at i:77632798 original size:13 final size:13
Alignment explanation
Indices: 77632751--77632921 Score: 104
Period size: 13 Copynumber: 12.8 Consensus size: 13
77632741 TCCAATGTTC
77632751 CATTTCATAT-AT
1 CATTTCATATAAT
77632763 CTATTTCTATATAAT
1 C-ATTTC-ATATAAT
***
77632778 CGCCTCATATAAT
1 CATTTCATATAAT
77632791 CATTTCATAT-AT
1 CATTTCATATAAT
77632803 CTATTTCTATATAATT
1 C-ATTTC-ATATAA-T
* *
77632819 GA-TTCATATAAC
1 CATTTCATATAAT
77632831 CATTTCATAT-AT
1 CATTTCATATAAT
*
77632843 CTACTTTTATATAAT
1 C-A-TTTCATATAAT
* *
77632858 CAATTCATATAAC
1 CATTTCATATAAT
77632871 CATTTCATAT-AT
1 CATTTCATATAAT
*
77632883 CTATTTTCGTATAATT
1 C-A-TTTCATATAA-T
*
77632899 GA-TTCATATAA-
1 CATTTCATATAAT
77632910 CTATTTCATATA
1 C-ATTTCATATA
77632922 TTAAATTTTC
Statistics
Matches: 122, Mismatches: 20, Indels: 33
0.70 0.11 0.19
Matches are distributed among these distances:
12 10 0.08
13 72 0.59
14 28 0.23
15 10 0.08
16 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.02, T:0.47
Consensus pattern (13 bp):
CATTTCATATAAT
Found at i:77632814 original size:27 final size:27
Alignment explanation
Indices: 77632784--77632922 Score: 85
Period size: 27 Copynumber: 5.1 Consensus size: 27
77632774 TAATCGCCTC
77632784 ATATAATCATTTCATATATCTATTTCT
1 ATATAATCATTTCATATATCTATTTCT
* * *
77632811 ATATAATTGA-TTCATATAACCATTTC-
1 ATATAA-TCATTTCATATATCTATTTCT
* *
77632837 ATAT-ATCTACTTTTATATAATC-AATTC-
1 ATATAATC-A-TTTCATAT-ATCTATTTCT
*
77632864 ATATAACCATTTCATATATCTATTTTCGT
1 ATATAATCATTTCATATATCTA-TTTC-T
* * *
77632893 ATA-ATTGA-TTCATATAACTATTTCAT
1 ATATAATCATTTCATATATCTATTTC-T
77632919 ATAT
1 ATAT
77632923 TAAATTTTCA
Statistics
Matches: 86, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
24 1 0.01
25 5 0.06
26 20 0.23
27 49 0.57
28 8 0.09
29 3 0.03
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.47
Consensus pattern (27 bp):
ATATAATCATTTCATATATCTATTTCT
Found at i:77651577 original size:47 final size:47
Alignment explanation
Indices: 77651526--77651797 Score: 420
Period size: 47 Copynumber: 5.7 Consensus size: 47
77651516 TTAGGATTCT
* * *
77651526 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
77651573 ATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
77651622 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
77651669 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
77651716 ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
77651763 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
77651798 TCCCGAAGGG
Statistics
Matches: 211, Mismatches: 11, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 164 0.78
49 46 0.22
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:77651966 original size:37 final size:37
Alignment explanation
Indices: 77651916--77652104 Score: 326
Period size: 37 Copynumber: 5.1 Consensus size: 37
77651906 CCGAGCTCCA
*
77651916 AAGACCCGATGACTACGTGTGGGGATTTTGTCAGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
77651953 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
77651990 AAGACCCGATGACTACGTGT-GGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
77652026 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
77652063 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
77652100 AAGAC
1 AAGAC
77652105 TTCGTAATAA
Statistics
Matches: 146, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
36 36 0.25
37 110 0.75
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:77652036 original size:73 final size:73
Alignment explanation
Indices: 77651916--77652104 Score: 324
Period size: 73 Copynumber: 2.6 Consensus size: 73
77651906 CCGAGCTCCA
*
77651916 AAGACCCGATGACTACGTGTGGGGATTTTGTCAGGGTAAGACCCGATGACTACGTGTGGGGATTT
1 AAGACCCGATGACTACGTGT-GGGATTTTGTCCGGGTAAGACCCGATGACTACGTGTGGGGATTT
77651981 TGTCCGGGT
65 TGTCCGGGT
77651990 AAGACCCGATGACTACGTGTGGGATTTTGTCCGGGTAAGACCCGATGACTACGTGTGGGGATTTT
1 AAGACCCGATGACTACGTGTGGGATTTTGTCCGGGTAAGACCCGATGACTACGTGTGGGGATTTT
77652055 GTCCGGGT
66 GTCCGGGT
* * *
77652063 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAGAC
1 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGTAAGAC
77652105 TTCGTAATAA
Statistics
Matches: 110, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
73 72 0.65
74 38 0.35
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (73 bp):
AAGACCCGATGACTACGTGTGGGATTTTGTCCGGGTAAGACCCGATGACTACGTGTGGGGATTTT
GTCCGGGT
Found at i:77666218 original size:17 final size:17
Alignment explanation
Indices: 77666192--77666233 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
77666182 AACAACTAAC
*
77666192 TTCATAAAGCTCACAAT
1 TTCATCAAGCTCACAAT
77666209 TTCATCAAGCTCACAAT
1 TTCATCAAGCTCACAAT
77666226 TTCATCAA
1 TTCATCAA
77666234 TGGAATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.38, C:0.26, G:0.05, T:0.31
Consensus pattern (17 bp):
TTCATCAAGCTCACAAT
Found at i:77670588 original size:40 final size:40
Alignment explanation
Indices: 77670536--77670749 Score: 274
Period size: 40 Copynumber: 5.4 Consensus size: 40
77670526 TGATATCCTA
* * *
77670536 GCTAAGTCCCGAAGACTTTTGTGCTAG-TGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATCCGG
* * * *
77670576 ACTAAGAT-CCGAAGGCTTTTGTGCTAG-TGACTAAATCCGG
1 GCTAAG-TCCCGAAGGCATTTGTGCGAGTTG-CTATATCCGG
*
77670616 GCTAAGTCCCAAAGGCATTTGTGCGAGTTGCTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGG
*
77670656 GCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCTGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGG
*
77670696 GCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATTC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGG
*
77670735 GCTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
77670750 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.10
40 139 0.88
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGG
Found at i:77672455 original size:25 final size:25
Alignment explanation
Indices: 77672413--77672555 Score: 98
Period size: 25 Copynumber: 5.7 Consensus size: 25
77672403 ACCAAACAAA
*
77672413 GCCTTTGTGGTA-AGTTATCTGAAAG
1 GCCTTTGTGGCATA-TTATCTGAAAG
* *
77672438 GCATTTGTGGCATATTATATAGAAA-
1 GCCTTTGTGGCATATTATCT-GAAAG
* * *
77672463 GCCTTTATGGCGA-GTTATCTAAAAG
1 GCCTTTGTGGC-ATATTATCTGAAAG
* *
77672488 GCCTATATGGCATATTATCTAGAAA-
1 GCCTTTGTGGCATATTATCT-GAAAG
*
77672513 GCCTTTGTGGCA-AGTTATTTGAAAG
1 GCCTTTGTGGCATA-TTATCTGAAAG
* **
77672538 ACCAATGTGGCATATTAT
1 GCCTTTGTGGCATATTAT
77672556 TTGGGAAGCC
Statistics
Matches: 92, Mismatches: 17, Indels: 18
0.72 0.13 0.14
Matches are distributed among these distances:
24 9 0.10
25 73 0.79
26 10 0.11
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.34
Consensus pattern (25 bp):
GCCTTTGTGGCATATTATCTGAAAG
Found at i:77672479 original size:50 final size:50
Alignment explanation
Indices: 77672410--77672617 Score: 195
Period size: 50 Copynumber: 4.1 Consensus size: 50
77672400 CAAACCAAAC
* *
77672410 AAAGCCTTTGTGGTAAGTTATCTGAAAGGCATTTGTGGCATATTATATAG
1 AAAGCCTTTGTGGCAAGTTATCTGAAAGGCATATGTGGCATATTATATAG
* * * * * *
77672460 AAAGCCTTTATGGCGAGTTATCTAAAAGGCCTATATGGCATATTATCTAG
1 AAAGCCTTTGTGGCAAGTTATCTGAAAGGCATATGTGGCATATTATATAG
* * * *
77672510 AAAGCCTTTGTGGCAAGTTATTTGAAAGACCA-ATGTGGCATATTATTTGG
1 AAAGCCTTTGTGGCAAGTTATCTGAAAG-GCATATGTGGCATATTATATAG
* * * * * * *
77672560 GAAGCCTTAGTGGTGAAGTTATCTTGAAAGCCCTA-GTGGCAAAGTTATCTAG
1 AAAGCCTTTGTGG-CAAGTTATC-TGAAAGGCATATGTGGCATA-TTATATAG
77672612 AAAGCC
1 AAAGCC
77672618 CTTGCAGGAA
Statistics
Matches: 127, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
50 92 0.72
51 17 0.13
52 18 0.14
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (50 bp):
AAAGCCTTTGTGGCAAGTTATCTGAAAGGCATATGTGGCATATTATATAG
Found at i:77672590 original size:26 final size:26
Alignment explanation
Indices: 77672561--77672619 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
77672551 ATTATTTGGG
* ** *
77672561 AAGCCTTAGTGGTGAAGTTATCTTGA
1 AAGCCCTAGTGGCAAAGTTATCTAGA
77672587 AAGCCCTAGTGGCAAAGTTATCTAGA
1 AAGCCCTAGTGGCAAAGTTATCTAGA
77672613 AAGCCCT
1 AAGCCCT
77672620 TGCAGGAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
AAGCCCTAGTGGCAAAGTTATCTAGA
Found at i:77675445 original size:38 final size:38
Alignment explanation
Indices: 77675397--77675596 Score: 283
Period size: 38 Copynumber: 5.3 Consensus size: 38
77675387 GGCTCAAAGG
* * *
77675397 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
77675435 CCCGGATATAATACTAGCACGAAGTCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
77675473 CCCGGATATATTACCAGCACGAAGCCTGTGGAATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
77675511 CCCAGATTTATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
77675549 CCCGGATATAATGCCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
77675587 CCTGGATATA
1 CCCGGATATA
77675597 CATCAAATAT
Statistics
Matches: 143, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 143 1.00
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:77685731 original size:27 final size:27
Alignment explanation
Indices: 77685653--77685737 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
77685643 TGGATAAGTT
* *
77685653 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTATCGAAATACCCCTGTAGG
77685680 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * *
77685707 GTAGAATTATTGAAATACTCTTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
77685734 GTAG
1 GTAG
77685738 GACTACCGAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:77693229 original size:27 final size:27
Alignment explanation
Indices: 77693129--77693222 Score: 143
Period size: 27 Copynumber: 3.5 Consensus size: 27
77693119 TGGATAAGTT
* *
77693129 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
77693156 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
77693183 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
77693210 GTAGGACTACCGA
1 GTAGAATTACCGA
77693223 TTTACCCTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:77703725 original size:40 final size:40
Alignment explanation
Indices: 77703676--77703770 Score: 181
Period size: 40 Copynumber: 2.4 Consensus size: 40
77703666 CGGATGTAAC
*
77703676 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
77703716 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
77703756 AACCCGCACGAATGC
1 AACCCGCACGAATGC
77703771 TATGGACATA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:77712167 original size:33 final size:35
Alignment explanation
Indices: 77712082--77712206 Score: 123
Period size: 40 Copynumber: 3.4 Consensus size: 35
77712072 CGGATGTAAC
* *
77712082 AACCAGCACGAATGCCTTCGGACTTAACCCGGATATAA-
1 AACCCGCACGAATGCCTT--G-C-TAACCCGGTTATAAT
77712120 AACCC-CACGAATGCCTT-C-AACCCGGTTATAAT
1 AACCCGCACGAATGCCTTGCTAACCCGGTTATAAT
77712152 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTT---G-C-TAACCCGGTTATAAT
77712192 AACCCGCACGAATGC
1 AACCCGCACGAATGC
77712207 TATGCACATA
Statistics
Matches: 76, Mismatches: 2, Indels: 16
0.81 0.02 0.17
Matches are distributed among these distances:
31 12 0.16
32 5 0.07
33 13 0.17
37 12 0.16
38 5 0.07
40 29 0.38
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.19
Consensus pattern (35 bp):
AACCCGCACGAATGCCTTGCTAACCCGGTTATAAT
Found at i:77714831 original size:25 final size:25
Alignment explanation
Indices: 77714786--77714842 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
77714776 ACCACTTGGA
**
77714786 ATAC-TAAGGATACTCGGAATTACC
1 ATACATAAGGATACTCAAAATTACC
* *
77714810 ATATATAAGGATACTCAAAATTACT
1 ATACATAAGGATACTCAAAATTACC
77714835 ATACATAA
1 ATACATAA
77714843 TAAGATGCCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 3 0.11
25 24 0.89
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.28
Consensus pattern (25 bp):
ATACATAAGGATACTCAAAATTACC
Found at i:77730780 original size:25 final size:26
Alignment explanation
Indices: 77730718--77730780 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
77730708 TATTTTCTAA
* *
77730718 AAAATTTAAAAATTATTAATGATTCAAT
1 AAAA-TTAAAAATTA-TAATAATTAAAT
77730746 -AAATTGAAAAATTA-AATAATTAAAT
1 AAAATT-AAAAATTATAATAATTAAAT
77730771 AAAATTAAAA
1 AAAATTAAAA
77730781 TTTAGGAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
25 13 0.42
26 7 0.23
27 11 0.35
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (26 bp):
AAAATTAAAAATTATAATAATTAAAT
Done.