Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 237 of 316
Found at i:78062975 original size:20 final size:20
Alignment explanation
Indices: 78062920--78062983 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
78062910 ATTCGGCATT
*
78062920 TGTATATGTATAAG-TATATAA
1 TGTATATG-ATAAGATAT-TTA
* *
78062941 TGT-TTTGATATGATATTTA
1 TGTATATGATAAGATATTTA
*
78062960 TGTATATGATAAGATATTTT
1 TGTATATGATAAGATATTTA
78062980 TGTA
1 TGTA
78062984 ATGTATTTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
19 9 0.26
20 23 0.66
21 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (20 bp):
TGTATATGATAAGATATTTA
Found at i:78066639 original size:38 final size:38
Alignment explanation
Indices: 78066588--78066749 Score: 261
Period size: 38 Copynumber: 4.3 Consensus size: 38
78066578 ATATTCGATG
*
78066588 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
78066626 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
78066664 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
78066702 TATATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
78066740 TATATTCGGG
1 TATATCCGGG
78066750 CCTTCGTGCC
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 115 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:78066803 original size:43 final size:43
Alignment explanation
Indices: 78066721--78066852 Score: 196
Period size: 43 Copynumber: 3.1 Consensus size: 43
78066711 GATAAATCCC
* * *
78066721 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
78066762 GCAGGCTTCGTGCTGGTGATGTGTATTCAGGCCTTCATGCCTA
1 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
78066805 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
78066848 GCAGG
1 GCAGG
78066853 TGTAATGCCG
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
41 15 0.19
42 2 0.02
43 64 0.79
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.30
Consensus pattern (43 bp):
GCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:78067250 original size:45 final size:42
Alignment explanation
Indices: 78067183--78067290 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
78067173 TTGAGTTGAT
* *
78067183 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
78067228 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
78067270 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
78067291 ACAGGCGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:78070317 original size:44 final size:44
Alignment explanation
Indices: 78070136--78070305 Score: 127
Period size: 43 Copynumber: 4.0 Consensus size: 44
78070126 CTCATACAAC
* * * *
78070136 GCCAACGTCCCAGACGTGGTCTTACATG-TAATCA-AATATCGAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAAATCACAA-ATCGAT
* ** * * * *
78070179 GCCACTGTCTTAGATAGGGTCTTACATG-AAATCA-AAGA-CAAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAAATCACAA-ATCGAT
* * * *
78070221 GCCGATGTCCCATACATGGTCTTACACGTAAATCTCAAATCGAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAAATCACAAATCGAT
* *
78070265 GCCAATGTCCCAGACGTGGTCTTACAC-AAAATCACATATCG
1 GCCAATGTCCCAGACATGGTCTTACACGAAAATCACAAATCG
78070306 GAATCCTATG
Statistics
Matches: 98, Mismatches: 26, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
42 23 0.23
43 46 0.47
44 29 0.30
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (44 bp):
GCCAATGTCCCAGACATGGTCTTACACGAAAATCACAAATCGAT
Found at i:78072887 original size:49 final size:47
Alignment explanation
Indices: 78072831--78072997 Score: 140
Period size: 49 Copynumber: 3.4 Consensus size: 47
78072821 TGTTGTGTGA
*
78072831 CAGTGTAAGACTTGTCTAGGACATGGTATCGACACTGATAGATGAGAGC
1 CAGTGTAAGACTTGTCTAGGACATGGCATCGAC-CTGATAGATGA-AGC
* * * * * *
78072880 CAGTGTAAGACCTGTCTGGGACACGGCATCGACCTCCATATATGAATGT
1 CAGTGTAAGACTTGTCTAGGACATGGCATCGACCT-GATAGATGAA-GC
* * * * *
78072929 CAGTGTAAGACTTTTCTAGGATATGGCATCAACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACTTGTCTAGGACATGGCATCGAC-CTGATAGATG-AAGC
*
78072976 CAGTGTAAGACCATGTCTAGGA
1 CAGTGTAAGA-CTTGTCTAGGA
78072998 TAAGGCGTCG
Statistics
Matches: 93, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
47 13 0.14
48 13 0.14
49 66 0.71
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (47 bp):
CAGTGTAAGACTTGTCTAGGACATGGCATCGACCTGATAGATGAAGC
Found at i:78076506 original size:25 final size:25
Alignment explanation
Indices: 78076477--78076537 Score: 122
Period size: 25 Copynumber: 2.4 Consensus size: 25
78076467 TAGAATAAAC
78076477 ATACATGAAATTCATAAAAATGATG
1 ATACATGAAATTCATAAAAATGATG
78076502 ATACATGAAATTCATAAAAATGATG
1 ATACATGAAATTCATAAAAATGATG
78076527 ATACATGAAAT
1 ATACATGAAAT
78076538 ATTGATATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.28
Consensus pattern (25 bp):
ATACATGAAATTCATAAAAATGATG
Found at i:78077153 original size:40 final size:40
Alignment explanation
Indices: 78077116--78077379 Score: 347
Period size: 40 Copynumber: 6.6 Consensus size: 40
78077106 GCTACTCGTT
* *
78077116 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
78077156 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
78077196 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
78077236 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
78077276 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
78077315 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
78077356 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
78077380 TCATCATTCG
Statistics
Matches: 202, Mismatches: 17, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 32 0.16
40 155 0.77
41 13 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:78077371 original size:119 final size:120
Alignment explanation
Indices: 78077116--78077380 Score: 360
Period size: 119 Copynumber: 2.2 Consensus size: 120
78077106 GCTACTCGTT
* *
78077116 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
* * *
78077181 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
66 AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATATAGTAACTAGCA
* *
78077236 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * *
78077299 AAATTAGTATCTCGCACAAATGCCTTC-GGATCTT-AGTCCGGATATGGTCACTTAGCA
65 AAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-CGGATATAGTAAC-TAGCA
78077356 CAAA-GCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGT
78077381 CATCATTCGA
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
118 6 0.05
119 64 0.50
120 57 0.44
121 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATATAGTAACTAGCA
Found at i:78080133 original size:80 final size:79
Alignment explanation
Indices: 78080049--78080220 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
78080039 GGACTAAGAT
*
78080049 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
78080113 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
78080129 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
78080194 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
78080208 CCGAAGGCATTTG
1 CCGAAGGCATTTG
78080221 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:78080200 original size:39 final size:39
Alignment explanation
Indices: 78079996--78080218 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
78079986 TTGAATGCTG
* * * * *
78079996 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
78080036 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
78080075 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
78080116 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
78080156 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
78080195 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
78080219 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:78080238 original size:79 final size:80
Alignment explanation
Indices: 78080076--78080253 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
78080066 AGATACAAAT
* * * *
78080076 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
78080141 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
78080156 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
78080220 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
78080235 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
78080254 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:78087281 original size:40 final size:40
Alignment explanation
Indices: 78087244--78087421 Score: 168
Period size: 40 Copynumber: 4.5 Consensus size: 40
78087234 ATATCCGGAC
78087244 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATTCCGGGT
* *
78087284 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATT-CGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATTCCGGGT
* * *
78087324 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA-TCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATTCCGGGT
* * * * * *
78087364 TATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA-ACTGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATTCCGGGT
*
78087403 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
78087422 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
39 34 0.29
40 80 0.67
41 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATTCCGGGT
Found at i:78087335 original size:80 final size:79
Alignment explanation
Indices: 78087250--78087421 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 79
78087240 GGACTAAGAT
*
78087250 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
78087314 -AAATTCGGGTTAAGTC
64 AAAACT-GGGCTAAGTC
* * * * * * *
78087330 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
78087395 AACTGGGCTATGTC
66 AACTGGGCTAAGTC
78087409 CCGAAGGCATTTG
1 CCGAAGGCATTTG
78087422 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 33 0.42
80 42 0.54
81 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACTGGGCTAAGTC
Found at i:78088963 original size:53 final size:56
Alignment explanation
Indices: 78088846--78089018 Score: 316
Period size: 56 Copynumber: 3.1 Consensus size: 56
78088836 TATTAGTTTA
78088846 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
78088902 TTGCCCATGCTTCTTATTTTATTCTTCCATT-A-AC-ACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
78088955 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
78089011 TTGCCCAT
1 TTGCCCAT
78089019 CATCCCTTGT
Statistics
Matches: 113, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
53 49 0.43
54 3 0.03
55 3 0.03
56 58 0.51
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:78097914 original size:16 final size:17
Alignment explanation
Indices: 78097883--78097915 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78097873 ATAAATTTCA
78097883 AAAATATTAATTTAATAT
1 AAAATATT-ATTTAATAT
78097901 AAAATATT-TTTAATA
1 AAAATATTATTTAATA
78097916 CTATAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAAATATTATTTAATAT
Found at i:78105105 original size:46 final size:46
Alignment explanation
Indices: 78105014--78105180 Score: 135
Period size: 46 Copynumber: 3.6 Consensus size: 46
78105004 ACATTATAAG
* * *
78105014 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-A
1 AGCCAATGTAAGA-CATATCTGGGACAT-GCATCGGCATCGAGACGTA
* * * * *
78105061 GTGCTAATGTAAGACATTTCTGGGACATGCTTCGGCCTCGAGACGTA
1 -AGCCAATGTAAGACATATCTGGGACATGCATCGGCATCGAGACGTA
* * *
78105108 AGCCAGTGTAAGACATATCTGGGACATGCATTGGC-TACGAGATGT-
1 AGCCAATGTAAGACATATCTGGGACATGCATCGGCAT-CGAGACGTA
* * *
78105153 -GTCAGTGTAAGACCATGTCTGGGACATG
1 AGCCAATGTAAGA-CATATCTGGGACATG
78105181 GCATGGGTAC
Statistics
Matches: 100, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
44 11 0.11
45 15 0.15
46 50 0.50
47 14 0.14
48 10 0.10
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
AGCCAATGTAAGACATATCTGGGACATGCATCGGCATCGAGACGTA
Found at i:78110267 original size:14 final size:15
Alignment explanation
Indices: 78110243--78110273 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
78110233 TTTCTTTGTT
78110243 TATTTTGGAACTTTA
1 TATTTTGGAACTTTA
78110258 TATTTT-GAACTTTA
1 TATTTTGGAACTTTA
78110272 TA
1 TA
78110274 CTTCATCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.55
Consensus pattern (15 bp):
TATTTTGGAACTTTA
Found at i:78112296 original size:26 final size:26
Alignment explanation
Indices: 78112267--78112322 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
78112257 TGGTACAAAT
78112267 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGCAAATGTTCCA
* *
78112293 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGCAAATGTTCCA
78112319 TGAT
1 TGAT
78112323 GGGCATTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.09, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGCAAATGTTCCA
Found at i:78121198 original size:14 final size:14
Alignment explanation
Indices: 78121179--78121209 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
78121169 AGCTAAACAA
78121179 TAACAACAAAATAG
1 TAACAACAAAATAG
*
78121193 TAACAACATAATAG
1 TAACAACAAAATAG
78121207 TAA
1 TAA
78121210 AATGGTAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (14 bp):
TAACAACAAAATAG
Found at i:78129125 original size:17 final size:17
Alignment explanation
Indices: 78129103--78129136 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
78129093 CTTAGTCGCT
78129103 AAGACTACACAGCCGCC
1 AAGACTACACAGCCGCC
78129120 AAGACTACACAGCCGCC
1 AAGACTACACAGCCGCC
78129137 GAGAGGGGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.41, G:0.18, T:0.06
Consensus pattern (17 bp):
AAGACTACACAGCCGCC
Found at i:78137869 original size:2 final size:2
Alignment explanation
Indices: 78137864--78137894 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
78137854 ATGAAATCAA
78137864 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
78137895 TATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:78146372 original size:19 final size:19
Alignment explanation
Indices: 78146348--78146387 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
78146338 ATAATATAAT
78146348 ATCCTTTGTAAAAACAATG
1 ATCCTTTGTAAAAACAATG
78146367 ATCCTTTGTAAAAACAATG
1 ATCCTTTGTAAAAACAATG
78146386 AT
1 AT
78146388 ATTTTAGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (19 bp):
ATCCTTTGTAAAAACAATG
Found at i:78161092 original size:18 final size:17
Alignment explanation
Indices: 78161069--78161121 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
78161059 TTTTAACTAA
78161069 TATATATTTGTTATTTTG
1 TATATATTT-TTATTTTG
*
78161087 TATATATATTTTATTTATT
1 TATATAT-TTTTATTT-TG
*
78161106 TATTTATTTTTATTTT
1 TATATATTTTTATTTT
78161122 TTCTTTTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 1 0.03
18 21 0.68
19 9 0.29
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.72
Consensus pattern (17 bp):
TATATATTTTTATTTTG
Found at i:78163504 original size:93 final size:94
Alignment explanation
Indices: 78163317--78163524 Score: 239
Period size: 93 Copynumber: 2.2 Consensus size: 94
78163307 TTTGTGCGCC
* * *
78163317 AGTGTAAGACATGT-TGGGACATGCTTCGGTCACATTATGAGAGCCAGTATAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGAGCCAGTATAAGACCATGTCTAG
*
78163381 GACATGGCATCGACATCCAGACGAGGGCT
66 GACATGGCATCGACATCCAGACGAGAGCT
* *
78163410 AGTGTAAGACATGTCTGAGACATGCTTCAGCCATATTATGA-ATGCCAG-AGTAAGA-CATGTCT
1 AGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGA-GCCAGTA-TAAGACCATGTCT
* * * *
78163472 AGGACAT-GCATTGGCCTCGACAGA-GATAGCT
64 AGGACATGGCATCGACATC--CAGACGAGAGCT
*
78163503 AGTGTAAGACGTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
78163525 CACATCGGCT
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
92 8 0.08
93 54 0.55
94 36 0.37
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTATGAGAGCCAGTATAAGACCATGTCTAG
GACATGGCATCGACATCCAGACGAGAGCT
Found at i:78165183 original size:13 final size:13
Alignment explanation
Indices: 78165165--78165191 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78165155 AACTGCAATA
78165165 GGACTGTACAACG
1 GGACTGTACAACG
78165178 GGACTGTACAACG
1 GGACTGTACAACG
78165191 G
1 G
78165192 ATTACCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.22, G:0.33, T:0.15
Consensus pattern (13 bp):
GGACTGTACAACG
Found at i:78171646 original size:21 final size:21
Alignment explanation
Indices: 78171605--78171646 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
78171595 CAAATTTCGA
**
78171605 TTTAAGTTTTATTCATTTTAT
1 TTTAAGTTTTATTCAGCTTAT
78171626 TTTAAGTTTTATTTC-GCTTAT
1 TTTAAGTTTTA-TTCAGCTTAT
78171647 ATATATACGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (21 bp):
TTTAAGTTTTATTCAGCTTAT
Found at i:78175209 original size:20 final size:20
Alignment explanation
Indices: 78175156--78175210 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
78175146 AAGAACAAGA
*
78175156 TGTATGGGTAGAAGTGGACT
1 TGTATGGGTAGAAGTGAACT
* * *
78175176 TGCATCGATAGAAGTGAACT
1 TGTATGGGTAGAAGTGAACT
*
78175196 TGTATGGGTGGAAGT
1 TGTATGGGTAGAAGT
78175211 CCCCCTATGT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.07, G:0.36, T:0.29
Consensus pattern (20 bp):
TGTATGGGTAGAAGTGAACT
Found at i:78180371 original size:13 final size:13
Alignment explanation
Indices: 78180353--78180380 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
78180343 AAACTATTTC
78180353 TTGTTTAGATTAA
1 TTGTTTAGATTAA
78180366 TTGTTTAGATTAA
1 TTGTTTAGATTAA
78180379 TT
1 TT
78180381 AGAATTGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
TTGTTTAGATTAA
Found at i:78180747 original size:24 final size:23
Alignment explanation
Indices: 78180703--78180748 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
78180693 ATCTTCCACT
*
78180703 TTATTTTTTTTAATTTCTATTTC
1 TTATTTTTTATAATTTCTATTTC
*
78180726 TTATTTATTTATAATTTTTATTT
1 TTATTT-TTTATAATTTCTATTT
78180749 GTTCTTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (23 bp):
TTATTTTTTATAATTTCTATTTC
Found at i:78184836 original size:2 final size:2
Alignment explanation
Indices: 78184824--78184857 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
78184814 TTAAGAATTA
78184824 AG AG A- AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
78184858 AGAAGAAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:78187322 original size:38 final size:38
Alignment explanation
Indices: 78187243--78187375 Score: 144
Period size: 38 Copynumber: 3.5 Consensus size: 38
78187233 TTACCGATTG
* *
78187243 CATGTTCAA-CATGCCTGCTGTTATTGTTGAACCGAGA-A
1 CATGTT-AAGCATGCCTACTGTTACTGTTGAACCGA-ATA
*
78187281 CATGTTAAGCATGCCTACTGTTACTGTTGAACCCAATA
1 CATGTTAAGCATGCCTACTGTTACTGTTGAACCGAATA
* * * * **
78187319 CATGTTAAGCATGTCTATTGCTACTATTGAATTGAATA
1 CATGTTAAGCATGCCTACTGTTACTGTTGAACCGAATA
*
78187357 CATGTTAAGCATGTCTACT
1 CATGTTAAGCATGCCTACT
78187376 ATTTTTACAT
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
37 3 0.04
38 79 0.96
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.35
Consensus pattern (38 bp):
CATGTTAAGCATGCCTACTGTTACTGTTGAACCGAATA
Found at i:78191959 original size:50 final size:50
Alignment explanation
Indices: 78191900--78191998 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 50
78191890 GTGAACCTCA
* *
78191900 AATCCCTATCTGACACAATGGATGAGGGAATCCCATGGAGGCGTACTATG
1 AATCCCTATCTAACACAATGGATGAAGGAATCCCATGGAGGCGTACTATG
78191950 AATCCCTATCTAACACAATGGATGAAGGAATCCCATGGAGGCGTACTAT
1 AATCCCTATCTAACACAATGGATGAAGGAATCCCATGGAGGCGTACTAT
78191999 CTCTATAGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.22
Consensus pattern (50 bp):
AATCCCTATCTAACACAATGGATGAAGGAATCCCATGGAGGCGTACTATG
Found at i:78199764 original size:5 final size:5
Alignment explanation
Indices: 78199756--78199838 Score: 58
Period size: 5 Copynumber: 15.4 Consensus size: 5
78199746 GGATTGGATT
* * * * *
78199756 TCATA TCATG GCATA GCATA TGCCATA TCATA TCTCATA GCATA TCACA
1 TCATA TCATA TCATA TCATA T--CATA TCATA --TCATA TCATA TCATA
*
78199805 TCATA TCTCTTA TCATA TCATA TCATA TCATA TC
1 TCATA --TCATA TCATA TCATA TCATA TCATA TC
78199839 TCATCTATTA
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 48 0.77
7 14 0.23
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.36
Consensus pattern (5 bp):
TCATA
Found at i:78199787 original size:12 final size:11
Alignment explanation
Indices: 78199767--78199838 Score: 60
Period size: 12 Copynumber: 6.5 Consensus size: 11
78199757 CATATCATGG
*
78199767 CATAGCATATGC
1 CATATCATAT-C
78199779 CATATCATATC
1 CATATCATATC
*
78199790 TCATAGCATAT-
1 -CATATCATATC
*
78199801 CACATCATATC
1 CATATCATATC
*
78199812 TCTTATCATAT-
1 -CATATCATATC
78199823 CATATCATAT-
1 CATATCATATC
78199833 CATATC
1 CATATC
78199839 TCATCTATTA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
10 23 0.46
11 1 0.02
12 26 0.52
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (11 bp):
CATATCATATC
Found at i:78199809 original size:27 final size:27
Alignment explanation
Indices: 78199779--78199842 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 27
78199769 TAGCATATGC
78199779 CATATCATATCTCATAGCATATCACAT
1 CATATCATATCTCATAGCATATCACAT
* *
78199806 CATATC---TCT--TATCATATCATAT
1 CATATCATATCTCATAGCATATCACAT
78199828 CATATCATATCTCAT
1 CATATCATATCTCAT
78199843 CTATTATAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
22 17 0.57
24 3 0.10
25 3 0.10
27 7 0.23
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (27 bp):
CATATCATATCTCATAGCATATCACAT
Found at i:78199842 original size:22 final size:22
Alignment explanation
Indices: 78199767--78199833 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
78199757 CATATCATGG
78199767 CATAGCATATGCCATATCATATCT
1 CATAGCATAT--CATATCATATCT
*
78199791 CATAGCATATCACATCATATCT
1 CATAGCATATCATATCATATCT
* *
78199813 CTTATCATATCATATCATATC
1 CATAGCATATCATATCATATC
78199834 ATATCTCATC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 29 0.74
24 10 0.26
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.36
Consensus pattern (22 bp):
CATAGCATATCATATCATATCT
Found at i:78201128 original size:48 final size:48
Alignment explanation
Indices: 78201057--78201328 Score: 234
Period size: 48 Copynumber: 5.7 Consensus size: 48
78201047 TATGTATGCT
78201057 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * * *
78201105 AGTGTAAGGCCATGTCTGGGACATGGCATCGG-CA-TTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAT--TATGAGAGCC
* *** **
78201153 AGTGTAAGACTATGTCTGGGACATAATATCAACCACATTATGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * *
78201200 AATGTAAAACCATGTCTGGGACATGGCATC-G--ACATTGAAACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT---ATGAGAGCC
* * *
78201248 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-CATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCC
* * * * *
78201296 AATGTAAGATCATGTCTAGAACATGGAATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
78201329 AATTTACCTT
Statistics
Matches: 175, Mismatches: 37, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
44 5 0.03
46 1 0.01
47 32 0.18
48 131 0.75
49 3 0.02
50 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:78201253 original size:95 final size:96
Alignment explanation
Indices: 78201054--78201271 Score: 303
Period size: 95 Copynumber: 2.3 Consensus size: 96
78201044 TGATATGTAT
** ** * **
78201054 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGGCCATG
1 GCTAGTGTAAGACCATGTCTGGGACATAACATCAACCACATTATGAGAGCCAATGTAAAACCATG
* * * * *
78201119 TCTGGGACATGGCATCGGCATTGATATGTGT
66 TCTGGGACATGGCATCGACATTGAAACGAGA
* *
78201150 GCTAGTGTAAGACTATGTCTGGGACATAATATCAACCACATTATGAGAG-CAATGTAAAACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATAACATCAACCACATTATGAGAGCCAATGTAAAACCATG
78201214 TCTGGGACATGGCATCGACATTGAAACGAGA
66 TCTGGGACATGGCATCGACATTGAAACGAGA
78201245 GCTAGTGTAAGACCATGTCTGGGACAT
1 GCTAGTGTAAGACCATGTCTGGGACAT
78201272 GGCATCGGCC
Statistics
Matches: 107, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
95 64 0.60
96 43 0.40
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATAACATCAACCACATTATGAGAGCCAATGTAAAACCATG
TCTGGGACATGGCATCGACATTGAAACGAGA
Found at i:78204105 original size:50 final size:50
Alignment explanation
Indices: 78204022--78204409 Score: 309
Period size: 50 Copynumber: 7.7 Consensus size: 50
78204012 GTGAGCCACG
* * *
78204022 TGTGTAGTATTAAGTGCAGGCTATTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
* * * * * * * * * *
78204072 TTTGTAGTACTAAGTACAGGTTACTATGCGTACC-CATTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCACA
* * * * * * *
78204123 TGTGTAGTACTAAGTGCAGGATACTACGTGTATCAAATGGTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
* *
78204173 TGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
* ** * * * *
78204223 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCACA
* * * * *
78204274 TGTGTAGTACTATGTGCA-GCTACTACGTATATCAGA-TGATTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA-TAGGTCACA
* * **
78204323 TGTGTAGTACTAAGTGCAGGCTACTACATATACCAGATTGATAGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
* * * *
78204373 TTTATAGTACTAAGTGCA-GCATACTATGAGTACCAGA
1 TGTGTAGTACTAAGTGCAGGC-TACTACGTGTACCAGA
78204410 GAGCTTCAGT
Statistics
Matches: 262, Mismatches: 67, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
49 32 0.12
50 169 0.65
51 59 0.23
52 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
Found at i:78204206 original size:101 final size:101
Alignment explanation
Indices: 78204018--78204206 Score: 234
Period size: 101 Copynumber: 1.9 Consensus size: 101
78204008 TATTGTGAGC
* * * * * * * *
78204018 CACGTGTGTAGTATTAAGTGCAGGCTATTACGTGTACCAGATTGATAGGTCGCATTTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAAATGGATAAGTCACATGTGTAGTACT
* * *
78204083 AAGTACAGGTTACTATGCGTACCCATTAACTTCGAT
66 AAATACAGGCTACTACGCGTACCCATTAACTTCGAT
* * *
78204119 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTATCAAATGGTTAAGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAAATGGATAAGTCACATGTGTAGTACT
* *
78204184 AAATGCAGGCTACTACGTGTACC
66 AAATACAGGCTACTACGCGTACC
78204207 AGATTGATAG
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAAATGGATAAGTCACATGTGTAGTACT
AAATACAGGCTACTACGCGTACCCATTAACTTCGAT
Found at i:78204381 original size:150 final size:151
Alignment explanation
Indices: 78204018--78204400 Score: 581
Period size: 151 Copynumber: 2.5 Consensus size: 151
78204008 TATTGTGAGC
* *
78204018 CACGTGTGTAGTATTAAGTGCAGGCTATTACGTGTACCAGATTGATAGGTCGCATTTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATTTGTAGTACT
* * * *
78204083 AAGTACAGGTTACTATGCGTACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGATACT
66 AAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGCAGGATACT
* *
78204148 ACGTGTATCAAATGGTTAAGT
131 ACGTATATCAAATGATTAAGT
* *
78204169 CACGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATTTGTAGTACT
* * *
78204234 AAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTGTAGTACTATGTGCA-GCTACT
66 AAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGCAGGATACT
*
78204298 ACGTATATCAGATGATTAAGT
131 ACGTATATCAAATGATTAAGT
* * * *
78204319 CACGTGTGTAGTACTAAGTGCAGGCTACTACATATACCAGATTGATAGGTTGCATTTATAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATTTGTAGTACT
78204384 AAGTGCA-GCATACTATG
66 AAGTGCAGGC-TACTATG
78204401 AGTACCAGAG
Statistics
Matches: 211, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
149 2 0.01
150 96 0.45
151 113 0.54
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (151 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATTTGTAGTACT
AAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGCAGGATACT
ACGTATATCAAATGATTAAGT
Found at i:78209529 original size:55 final size:55
Alignment explanation
Indices: 78209468--78209644 Score: 255
Period size: 55 Copynumber: 3.2 Consensus size: 55
78209458 ATATTAAGTC
* * *
78209468 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
78209523 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
78209578 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
78209634 CGCACACTTAG
1 CGCACACTTAG
78209645 CGCCAATCTC
Statistics
Matches: 110, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 93 0.85
56 17 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:78209532 original size:28 final size:27
Alignment explanation
Indices: 78209468--78209644 Score: 237
Period size: 27 Copynumber: 6.4 Consensus size: 27
78209458 ATATTAAGTC
* *
78209468 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
78209495 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
78209523 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
78209550 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
78209578 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
78209605 CGCACACTTAGTGCTGCACAATTTAAACT
1 CGCACACTTAGTGCTACATAA--TCAACT
78209634 CGCACACTTAG
1 CGCACACTTAG
78209645 CGCCAATCTC
Statistics
Matches: 136, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
27 69 0.51
28 52 0.38
29 15 0.11
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:78211318 original size:15 final size:15
Alignment explanation
Indices: 78211294--78211333 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
78211284 GGCTGTTACA
*
78211294 TTGGATTTCTCTATC
1 TTGGACTTCTCTATC
78211309 TTGGACTTCTCTATC
1 TTGGACTTCTCTATC
*
78211324 ATGGACTTCT
1 TTGGACTTCT
78211334 TAATCCTGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.47
Consensus pattern (15 bp):
TTGGACTTCTCTATC
Found at i:78213929 original size:50 final size:50
Alignment explanation
Indices: 78213846--78214233 Score: 347
Period size: 50 Copynumber: 7.7 Consensus size: 50
78213836 GTGAGCCACG
*
78213846 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCACA
* * * * * * * *
78213896 TTTGTAGTACTAAGTGCAGGTTACTATGCGTACC-CATTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAA--TAGGTCACA
* * *** *
78213947 TGTGTAGTACTAAGTGCAGGATACTACGTGTATCAGATGGTTAAGTCA-A
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCACA
* * *
78213996 GTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 -TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCACA
* ** * *
78214047 TGTGTAGTACTAAGTGCAGGCTACTATGCATACTC-G-TTAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTAA--TAGGTCACA
* * * * *
78214098 TGTGTAGTACTAAGTGCA-GCTACTACGTGTATCAGATGATTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCACA
* * * * * *
78214147 TGTGTAATACTAAGTGCAAGCTACTACATATACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCACA
* *
78214197 TGTGTAGTACTAAGTGCA-GCATACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGC-TACTACGTGTACCAGA
78214234 GAGCTTCAGT
Statistics
Matches: 264, Mismatches: 62, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
49 33 0.12
50 167 0.63
51 62 0.23
52 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCACA
Found at i:78214030 original size:101 final size:101
Alignment explanation
Indices: 78213842--78214030 Score: 254
Period size: 101 Copynumber: 1.9 Consensus size: 101
78213832 TGTTGTGAGC
* * * * *
78213842 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCGCATTTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATGAATAAGTCGAATGTGTAGTACT
* * *
78213907 AAGTGCAGGTTACTATGCGTACCCATTAACTTCGAT
66 AAATGCAGGCTACTACGCGTACCCATTAACTTCGAT
* **
78213943 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTATCAGATGGTTAAGTC-AAGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATGAATAAGTCGAA-TGTGTAGTAC
*
78214007 TAAATGCAGGCTACTACGTGTACC
65 TAAATGCAGGCTACTACGCGTACC
78214031 AGATTGATAG
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
100 1 0.01
101 74 0.99
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATGAATAAGTCGAATGTGTAGTACT
AAATGCAGGCTACTACGCGTACCCATTAACTTCGAT
Found at i:78214198 original size:150 final size:151
Alignment explanation
Indices: 78213842--78214230 Score: 611
Period size: 151 Copynumber: 2.6 Consensus size: 151
78213832 TGTTGTGAGC
* *
78213842 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTAATAGGTCGCATTTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
* * *
78213907 AAGTGCAGGTTACTATGCGTACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGATACT
66 AAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGCAGGATACT
*
78213972 ACGTGTATCAGATGGTTAAGT
131 ACGTGTATCAGATGATTAAGT
* *
78213993 CAAGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
* * *
78214058 AAGTGCAGGCTACTATGCATACTCGTTAACTTCGATCACATGTGTAGTACTAAGTGCA-GCTACT
66 AAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGCAGGATACT
78214122 ACGTGTATCAGATGATTAAGT
131 ACGTGTATCAGATGATTAAGT
* * * *
78214143 CACGTGTGTAATACTAAGTGCAAGCTACTACATATACCAGATTGATAGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
*
78214208 AAGTGCA-GCATACTATGCGTACC
66 AAGTGCAGGC-TACTATGCATACC
78214231 AGAGAGCTTC
Statistics
Matches: 218, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
149 2 0.01
150 102 0.47
151 114 0.52
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (151 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGCAGGATACT
ACGTGTATCAGATGATTAAGT
Found at i:78219237 original size:17 final size:17
Alignment explanation
Indices: 78219196--78219238 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
78219186 GAATTTAAAT
*
78219196 AACTAAAATAAATAAAC
1 AACTAAAATAAAAAAAC
**
78219213 AAGAAAAATAAAAAAAC
1 AACTAAAATAAAAAAAC
*
78219230 GACTAAAAT
1 AACTAAAAT
78219239 CAGTAAACCA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.72, C:0.09, G:0.05, T:0.14
Consensus pattern (17 bp):
AACTAAAATAAAAAAAC
Found at i:78222214 original size:6 final size:6
Alignment explanation
Indices: 78222205--78222232 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
78222195 TTTTAATAGA
78222205 TTTTAG TTTTAG TTTTAG TTTTAG TTTT
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTT
78222233 TTTTTTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (6 bp):
TTTTAG
Found at i:78222241 original size:15 final size:14
Alignment explanation
Indices: 78222223--78222252 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
78222213 TTAGTTTTAG
*
78222223 TTTTAGTTTTTTTT
1 TTTTTGTTTTTTTT
78222237 TTTTTGTTTTTTTT
1 TTTTTGTTTTTTTT
78222251 TT
1 TT
78222253 CCTATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.03, C:0.00, G:0.07, T:0.90
Consensus pattern (14 bp):
TTTTTGTTTTTTTT
Found at i:78223786 original size:20 final size:20
Alignment explanation
Indices: 78223761--78223799 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
78223751 AAAGAAAGTT
78223761 AAGTTACCTTAAAAATATGA
1 AAGTTACCTTAAAAATATGA
78223781 AAGTTACCTTAAAAATATG
1 AAGTTACCTTAAAAATATG
78223800 TTCTAACTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (20 bp):
AAGTTACCTTAAAAATATGA
Found at i:78225263 original size:18 final size:19
Alignment explanation
Indices: 78225240--78225276 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
78225230 GATATGATAC
*
78225240 TAAAAT-TATTAAAAAAAT
1 TAAAATATATAAAAAAAAT
78225258 TAAAATATATAAAAAAAAT
1 TAAAATATATAAAAAAAAT
78225277 CAGGGAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
TAAAATATATAAAAAAAAT
Found at i:78225565 original size:22 final size:21
Alignment explanation
Indices: 78225530--78225605 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
78225520 AAAAGGTATC
* *
78225530 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
78225551 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
78225574 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
78225593 TGC-AATCATATCT
1 TACAAATCATATCT
78225606 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:78225622 original size:35 final size:37
Alignment explanation
Indices: 78225559--78225656 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
78225549 ATTACAAAAT
78225559 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
78225595 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
78225630 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
78225657 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:78225664 original size:17 final size:19
Alignment explanation
Indices: 78225566--78225656 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
78225556 AATCATATCT
78225566 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
78225585 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
78225603 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
78225620 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
78225639 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
78225657 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:78226328 original size:45 final size:44
Alignment explanation
Indices: 78226194--78226431 Score: 210
Period size: 44 Copynumber: 5.3 Consensus size: 44
78226184 GAAGAATATG
*
78226194 GAGATGCCAAATCTGTTTCTTCGATTTGTTCCCCGTCTAATACA
1 GAGATGCCAAATCTGTTTCTTCGATTTGCTCCCCGTCTAATACA
* * * * * *
78226238 GAGACGTCAAATCTGCTTCTTCAATCTGCTCCCTGTCTAATACA
1 GAGATGCCAAATCTGTTTCTTCGATTTGCTCCCCGTCTAATACA
* *
78226282 GAGATGCCAAATATGTTATCTCCGATTTGCTCCCCGTCTAATACA
1 GAGATGCCAAATCTGTT-TCTTCGATTTGCTCCCCGTCTAATACA
* * * * * *
78226327 GAGATGCCAAATCTGTCATCTTGGATCTGCT-TCGGTGTAA-ACA
1 GAGATGCCAAATCTGT-TTCTTCGATTTGCTCCCCGTCTAATACA
* * * * *
78226370 CATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACA
1 GA-G-ATGCCAAATCTG-T-T-TCTTCGATTTGCTCCCCGTCTAATACA
*
78226419 GAGATACCAAATC
1 GAGATGCCAAATC
78226432 ATCTTGGATC
Statistics
Matches: 148, Mismatches: 38, Indels: 13
0.74 0.19 0.07
Matches are distributed among these distances:
43 4 0.03
44 57 0.39
45 57 0.39
46 1 0.01
47 18 0.12
48 7 0.05
49 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (44 bp):
GAGATGCCAAATCTGTTTCTTCGATTTGCTCCCCGTCTAATACA
Found at i:78226500 original size:78 final size:78
Alignment explanation
Indices: 78226371--78226898 Score: 788
Period size: 78 Copynumber: 6.8 Consensus size: 78
78226361 GTGTAAACAC
*
78226371 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
78226436 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
78226449 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGTCAAACCGTC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
78226513 TTGGATCTACTTCA
65 TTGGATCTGCTTCA
*
78226527 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
78226592 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
78226605 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
78226670 TGGATTTGCTTCA
66 TGGATCTGCTTCA
* * *
78226683 TTGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
78226748 TAGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * * *
78226761 ATGAAGGTCAGATCTGTTGTATCTTTGATTTGCTCTCCGTCTAATACAGAGATGCTAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
78226826 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * **
78226839 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCATCGAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
78226899 TTGTTTCTTC
Statistics
Matches: 405, Mismatches: 43, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
77 2 0.00
78 401 0.99
79 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:78226803 original size:234 final size:234
Alignment explanation
Indices: 78226298--78226898 Score: 835
Period size: 234 Copynumber: 2.5 Consensus size: 234
78226288 CCAAATATGT
* *
78226298 TATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAA----TCATCTTGGATCTG---C--T
* *
78226363 GTAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATACCA
57 -T---CA-ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCA
78226428 AATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAA
117 AATCATCTTGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAA
* * *
78226493 TACAGAGATGTCAAACCGTCTTGGATCTACTTCAATGAAGGTCAGATCTGCTG
182 TACAGAGATGCCAAACCATCTTAGATCTACTTCAATGAAGGTCAGATCTGCTG
*
78226546 TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
* * *
78226611 GTCAGATCTGCTATGTCTTCGATCTACTCTCTGTCTAATACAGAGATGCCAAATCATCTTGGATT
66 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATC
* *
78226676 TGCTTCATTGAAGGT-CAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCA
131 TGCTTCAATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCA
* * *
78226740 AATCATCTTAGATCTGCTTCAATGAAGGTCAGATCTGTTG
195 AACCATCTTAGATCTACTTCAATGAAGGTCAGATCTGCTG
* * * *
78226780 TATCTTTGATTTGCTCTCCGTCTAATACAGAGATGCTAAATCATCTTGGATCTGCTTCAATGAAG
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
* * * **
78226845 GTCAGATCTGCTATGTCTTCAATCTGCTCTCCATCGAATATGGAGATGCCAAAT
66 GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAAT
78226899 TTGTTTCTTC
Statistics
Matches: 324, Mismatches: 28, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
233 2 0.01
234 266 0.82
235 2 0.01
238 1 0.00
239 1 0.00
241 1 0.00
244 14 0.04
248 37 0.11
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (234 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
GTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATC
TGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
ACCATCTTAGATCTACTTCAATGAAGGTCAGATCTGCTG
Found at i:78227027 original size:87 final size:89
Alignment explanation
Indices: 78226931--78227093 Score: 224
Period size: 89 Copynumber: 1.9 Consensus size: 89
78226921 GACAGTACAG
* *
78226931 AGATGCCAAATCATCTTAGATCTGCTTC-A-GCGTAAACA-CATGAAAGCCAAATCTGCTATGTC
1 AGATGCCAAATCATCTTAGATCTACTTCGATGCGAAAACATC-TGAAAGCCAAATCTGCTATGTC
78226993 TTCGATCTGCTCCTTGTCAACGCAA
65 TTCGATCTGCTCCTTGTCAACGCAA
* * * ** *
78227018 AGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCTGAAGGTTAGATCTGCTATGTCT
1 AGATGCCAAATCATCTTAGATCTACTTCGATGCGAAAACATCTGAAAGCCAAATCTGCTATGTCT
78227083 TCGATCTGCTC
66 TCGATCTGCTC
78227094 TCCATCGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
87 26 0.40
88 1 0.02
89 37 0.57
90 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (89 bp):
AGATGCCAAATCATCTTAGATCTACTTCGATGCGAAAACATCTGAAAGCCAAATCTGCTATGTCT
TCGATCTGCTCCTTGTCAACGCAA
Found at i:78232564 original size:29 final size:29
Alignment explanation
Indices: 78232532--78232620 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
78232522 GAATGAATTT
78232532 AAGAATGATTATTAATGTGCTACGAATGA
1 AAGAATGATTATTAATGTGCTACGAATGA
* * * **
78232561 AAGAAT-A--A-GAAT-TGCAAAAGAATTT
1 AAGAATGATTATTAATGTGC-TACGAATGA
78232586 AAGAATGATTATTAATGTGCTACGAATGA
1 AAGAATGATTATTAATGTGCTACGAATGA
78232615 AAGAAT
1 AAGAAT
78232621 AAGAATTGCA
Statistics
Matches: 44, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
24 3 0.07
25 14 0.32
26 2 0.05
28 2 0.05
29 20 0.45
30 3 0.07
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (29 bp):
AAGAATGATTATTAATGTGCTACGAATGA
Found at i:78232588 original size:54 final size:54
Alignment explanation
Indices: 78232526--78232634 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
78232516 AAGAATGAAT
78232526 GAATTTAAGAATGATTATTAATGTGCTACGAATGAAAGAATAAGAATTGCAAAA
1 GAATTTAAGAATGATTATTAATGTGCTACGAATGAAAGAATAAGAATTGCAAAA
78232580 GAATTTAAGAATGATTATTAATGTGCTACGAATGAAAGAATAAGAATTGCAAAA
1 GAATTTAAGAATGATTATTAATGTGCTACGAATGAAAGAATAAGAATTGCAAAA
78232634 G
1 G
78232635 TTTAACGGAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.28
Consensus pattern (54 bp):
GAATTTAAGAATGATTATTAATGTGCTACGAATGAAAGAATAAGAATTGCAAAA
Found at i:78236158 original size:17 final size:17
Alignment explanation
Indices: 78236136--78236168 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
78236126 GATATGATAC
78236136 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
78236153 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
78236169 AATCAAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:78236169 original size:18 final size:17
Alignment explanation
Indices: 78236136--78236169 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78236126 GATATGATAC
*
78236136 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
78236153 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
78236170 ATCAAGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:78236460 original size:22 final size:21
Alignment explanation
Indices: 78236425--78236500 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
78236415 AAAAGGTATC
* *
78236425 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
78236446 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
78236469 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
78236488 TGC-AATCATATCT
1 TACAAATCATATCT
78236501 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:78236485 original size:19 final size:19
Alignment explanation
Indices: 78236461--78236551 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
78236451 AATCATATCT
78236461 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
78236480 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
78236498 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
78236515 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
78236534 TCTAATATTGCATATCAT
1 TCTAAGATTGCATATCAT
78236552 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:78236517 original size:35 final size:37
Alignment explanation
Indices: 78236454--78236551 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
78236444 ATTACAAAAT
78236454 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
78236490 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
*
78236525 CATATCATATCTAATATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
78236552 TGAAGATTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:78236530 original size:14 final size:15
Alignment explanation
Indices: 78236475--78236530 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
78236465 AGATTGCATA
78236475 TCATATCTAAGATTG
1 TCATATCTAAGATTG
78236490 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
78236508 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
78236525 -CATATC
1 TCATATC
78236531 ATATCTAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:78236700 original size:21 final size:20
Alignment explanation
Indices: 78236671--78236710 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
78236661 TAGACTTCAG
*
78236671 TTTTTTTTTGGGATTTATTA
1 TTTTTTTTTGGGACTTATTA
*
78236691 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTGGGACTTATT
78236711 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.12, C:0.03, G:0.15, T:0.70
Consensus pattern (20 bp):
TTTTTTTTTGGGACTTATTA
Found at i:78237709 original size:22 final size:22
Alignment explanation
Indices: 78237684--78237726 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
78237674 TTCGGTACTA
*
78237684 ACATTTGTTGTCCCTAGTACCG
1 ACATTTGCTGTCCCTAGTACCG
*
78237706 ACATTTGCTGTCTCTAGTACC
1 ACATTTGCTGTCCCTAGTACC
78237727 AATATTCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (22 bp):
ACATTTGCTGTCCCTAGTACCG
Found at i:78240967 original size:50 final size:49
Alignment explanation
Indices: 78240850--78241076 Score: 233
Period size: 50 Copynumber: 4.6 Consensus size: 49
78240840 TGATACGCAC
* * *
78240850 AGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATTCGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATT-GATACACGT
* *
78240899 AGTAACCTGCACTTAGTACTACACACGCGACCTCACCATCTGATACACGT
1 AGTAGCCTGCACTTAGTACTACACACGCGACCTAACCAT-TGATACACGT
* * * * * *
78240949 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTACGCAT
1 AGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CCATTGA-TACACGT
* * * * * *
78241000 AGTAGCTTGCACTTAATACTACACATGTGACTTAA-CAGTATGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACACGCGACCTAACCA-T-TGATACACGT
78241050 AGTAGCCTGCACTTAGTACTACACACG
1 AGTAGCCTGCACTTAGTACTACACACG
78241077 TGTATTCACA
Statistics
Matches: 147, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
49 32 0.22
50 75 0.51
51 40 0.27
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
AGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATTGATACACGT
Found at i:78243423 original size:59 final size:58
Alignment explanation
Indices: 78243217--78243423 Score: 203
Period size: 58 Copynumber: 3.6 Consensus size: 58
78243207 AAGCTATTTC
* * * * *
78243217 ATACTGAAGAAAATTTTGAAAGATAACATAGCT---GAT-TTACTCCGCGAGTTGTTTT
1 ATACTTAAGAAAATTTTGAAA-ATAACACAACTGGGGATGTTACTCAGTGAGTTGTTTT
* * *
78243272 ATACTTAA-AAAATTTTGAAAGATAACACAGA-TAGGGATGTTACTCAATAAGTTG-TTT
1 ATACTTAAGAAAATTTTGAAA-ATAACACA-ACTGGGGATGTTACTCAGTGAGTTGTTTT
* * * *
78243329 ATAATTAAGAAAATTTTGACAAATAACATAGCTGGGGATGTTACTCTGTGAGTTGTTTT
1 ATACTTAAGAAAATTTTGA-AAATAACACAACTGGGGATGTTACTCAGTGAGTTGTTTT
*
78243388 ATACTTAAGAAAATTTTGAAATATAAGACAACTGGG
1 ATACTTAAGAAAATTTTGAAA-ATAACACAACTGGG
78243424 AGTTTTTAAT
Statistics
Matches: 124, Mismatches: 18, Indels: 16
0.78 0.11 0.10
Matches are distributed among these distances:
54 21 0.17
55 7 0.06
57 13 0.10
58 49 0.40
59 34 0.27
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.34
Consensus pattern (58 bp):
ATACTTAAGAAAATTTTGAAAATAACACAACTGGGGATGTTACTCAGTGAGTTGTTTT
Found at i:78243740 original size:69 final size:68
Alignment explanation
Indices: 78243476--78244037 Score: 326
Period size: 69 Copynumber: 8.2 Consensus size: 68
78243466 CGCTTATGAG
* ** * ** * **
78243476 CCTTAATATGACAATTGGGAACTTTGCTCTTGCTAACTGTGTT-GAGGCTGCGGCTCTT-CATCT
1 CCTTAATATGATAGCTGGGAGCTTTGCTCTCACTAACTGTGTTAAAGGCTATGGCTCTTGC--CT
*
78243539 GCGAG
64 GCGAA
* * ** * * * *
78243544 CATTAATATGAAAATTGGGAGCTTTTCTTTCACTAACTCTGTTCAAA-GCTATGGCTCTTAGCTT
1 CCTTAATATGATAGCTGGGAGCTTTGCTCTCACTAACTGTGTT-AAAGGCTATGGCTCTT-GCCT
78243608 GCGAA
64 GCGAA
** * * * * * *
78243613 CCTTAATATGATAGCTAAGAGATTTGCT-TCCGCTAATTGTGTTAAAGGCTACGACTCTTCGCGT
1 CCTTAATATGATAGCTGGGAGCTTTGCTCT-CACTAACTGTGTTAAAGGCTATGGCTCTT-GCCT
*
78243677 GTGAA
64 GCGAA
* * * *
78243682 TCTTAATATAATAGTTGGGAGCTTTGCTCTCACTAACTGTGTTAAAGGCTATGGCTCTTGTCCTA
1 CCTTAATATGATAGCTGGGAGCTTTGCTCTCACTAACTGTGTTAAAGGCTATGGCTCTTG-CCTG
**
78243747 CGTG
65 CGAA
* * ** ** * * * * * *
78243751 CCTTAATATGACAACTGGGAGCTTTGCTCTTGCTAACTGTGTTGGATGTTGTGGCTTTTCTCCTA
1 CCTTAATATGATAGCTGGGAGCTTTGCTCTCACTAACTGTGTTAAAGGCTATGGCTCTT-GCCTG
78243816 CGAA
65 CGAA
* * * * * * * ** *
78243820 CCTTAATATGATAGTTGGGAGCTTTGCTCTCGCTAAATCTATTAGAGGATGCGGCTCTTTGCCTA
1 CCTTAATATGATAGCTGGGAGCTTTGCTCTCACTAACTGTGTTAAAGGCTATGGCTC-TTGCCTG
*
78243885 CAAA
65 CGAA
* * * *** *
78243889 CCTTAATATGACAGCTGGGAGCTTTGCTCTCATTAACTGTGTTAGAGGCTGCAGCACTT-CATCT
1 CCTTAATATGATAGCTGGGAGCTTTGCTCTCACTAACTGTGTTAAAGGCTATGGCTCTTGC--CT
*
78243953 GC-ATG
64 GCGA-A
* * * * *
78243958 CCTTAATATGATAGCTGGGAGCTTTGCTCTCACTAATTGTGTTGAAGGCTATGACACTTTGCTTG
1 CCTTAATATGATAGCTGGGAGCTTTGCTCTCACTAACTGTGTTAAAGGCTATGGCTC-TTGCCTG
*
78244023 CGAG
65 CGAA
*
78244027 CCTTAGTATGA
1 CCTTAATATGA
78244038 CACGAATGTT
Statistics
Matches: 381, Mismatches: 97, Indels: 31
0.75 0.19 0.06
Matches are distributed among these distances:
67 1 0.00
68 43 0.11
69 328 0.86
70 7 0.02
71 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (68 bp):
CCTTAATATGATAGCTGGGAGCTTTGCTCTCACTAACTGTGTTAAAGGCTATGGCTCTTGCCTGC
GAA
Found at i:78244031 original size:138 final size:137
Alignment explanation
Indices: 78243434--78244039 Score: 495
Period size: 138 Copynumber: 4.4 Consensus size: 137
78243424 AGTTTTTAAT
* * * * * * * * *
78243434 TCTCACTAACTATATTGAAGGCTGTTGCTCTTCGCTTATGAGCCTTAATATGACAATTGGGAACT
1 TCTCACTAACTCTGTT-AAGGCTATGGCTCTTTGCCTACGAGCCTTAATATGACAACTGGGAGCT
* * * *
78243499 TTGCTCTTGCTAACTGTGTT-GAGGCTGCGGCTCTTCATCTGCGAGCATTAATATGAAAATTGGG
65 TTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCATCTGCGAGCCTTAATATGATAGTTGGG
*
78243563 AGCTTTTC
130 AGCTTTGC
* * * * * * * * ** *
78243571 TTTCACTAACTCTGTTCAAAGCTATGGCTCTTAGCTTGCGAACCTTAATATGATAGCTAAGAGAT
1 TCTCACTAACTCTGTT-AAGGCTATGGCTCTTTGCCTACGAGCCTTAATATGACAACTGGGAGCT
* * * * * * ** *
78243636 TTGCT-TCCGCTAATTGTGTTAAAGGCTACGACTCTTC-GCGTGTGAATCTTAATATAATAGTTG
65 TTGCTCT-CGCTAACTGTGTTAGAGGCTGCGGCTCTTCATC-TGCGAGCCTTAATATGATAGTTG
78243699 GGAGCTTTGC
128 GGAGCTTTGC
* *
78243709 TCTCACTAACTGTGTTAAAGGCTATGGCTC-TTGTCCTACGTGCCTTAATATGACAACTGGGAGC
1 TCTCACTAACTCTGTT-AAGGCTATGGCTCTTTG-CCTACGAGCCTTAATATGACAACTGGGAGC
* * * * * * * *
78243773 TTTGCTCTTGCTAACTGTGTTGGATGTTGTGGCTTTTC-TCCTACGAACCTTAATATGATAGTTG
64 TTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCAT-CTGCGAGCCTTAATATGATAGTTG
78243837 GGAGCTTTGC
128 GGAGCTTTGC
* * * * ** * * *
78243847 TCTCGCTAAATCTATTAGAGGATGCGGCTCTTTGCCTACAAACCTTAATATGACAGCTGGGAGCT
1 TCTCACTAACTCTGTTA-AGGCTATGGCTCTTTGCCTACGAGCCTTAATATGACAACTGGGAGCT
** * * *
78243912 TTGCTCTCATTAACTGTGTTAGAGGCTGCAGCACTTCATCTGC-ATGCCTTAATATGATAGCTGG
65 TTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCATCTGCGA-GCCTTAATATGATAGTTGG
78243976 GAGCTTTGC
129 GAGCTTTGC
* * * * * * *
78243985 TCTCACTAATTGTGTTGAAGGCTATGACACTTTGCTTGCGAGCCTTAGTATGACA
1 TCTCACTAACTCTGTT-AAGGCTATGGCTCTTTGCCTACGAGCCTTAATATGACA
78244040 CGAATGTTAT
Statistics
Matches: 359, Mismatches: 99, Indels: 21
0.75 0.21 0.04
Matches are distributed among these distances:
136 1 0.00
137 68 0.19
138 283 0.79
139 7 0.02
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (137 bp):
TCTCACTAACTCTGTTAAGGCTATGGCTCTTTGCCTACGAGCCTTAATATGACAACTGGGAGCTT
TGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCATCTGCGAGCCTTAATATGATAGTTGGGA
GCTTTGC
Found at i:78244075 original size:24 final size:24
Alignment explanation
Indices: 78244043--78244090 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
78244033 TATGACACGA
78244043 ATGTTATTTGG-AAATTTTTGTCAT
1 ATGTTATTTGGAAAATTTTT-TCAT
78244067 ATGTTATTTGGAAAATTTTTTCAT
1 ATGTTATTTGGAAAATTTTTTCAT
78244091 TCATTAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.27, C:0.04, G:0.15, T:0.54
Consensus pattern (24 bp):
ATGTTATTTGGAAAATTTTTTCAT
Found at i:78253493 original size:28 final size:28
Alignment explanation
Indices: 78253436--78253615 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
78253426 TAAATTGTGC
*
78253436 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78253463 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78253491 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78253519 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
78253546 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
78253574 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
78253601 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78253616 GACTTAATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:78253500 original size:55 final size:55
Alignment explanation
Indices: 78253436--78253615 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
78253426 TAAATTGTGC
*
78253436 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
78253491 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
78253546 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
78253601 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78253616 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:78253575 original size:83 final size:82
Alignment explanation
Indices: 78253436--78253615 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
78253426 TAAATTGTGC
78253436 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
78253501 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
78253519 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
78253584 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
78253601 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78253616 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 22 0.24
83 70 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:78261687 original size:28 final size:28
Alignment explanation
Indices: 78261630--78261809 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
78261620 TAAATTGTGC
*
78261630 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78261657 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78261685 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78261713 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
78261740 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
78261768 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
78261795 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78261810 GACTTAATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:78261694 original size:55 final size:55
Alignment explanation
Indices: 78261630--78261809 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
78261620 TAAATTGTGC
*
78261630 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
78261685 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
78261740 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
78261795 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78261810 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:78261769 original size:83 final size:82
Alignment explanation
Indices: 78261630--78261809 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
78261620 TAAATTGTGC
78261630 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
78261695 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
78261713 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
78261778 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
78261795 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78261810 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 22 0.24
83 70 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:78264991 original size:25 final size:25
Alignment explanation
Indices: 78264949--78264997 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
78264939 CTTTATTATT
* *
78264949 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
78264974 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
78264998 GGTTCTCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:78268349 original size:27 final size:28
Alignment explanation
Indices: 78268313--78268366 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
78268303 TCCAAATTCA
*
78268313 CACTTTAATTA-TAAAATAATTAATTTG
1 CACTTAAATTATTAAAATAATTAATTTG
* *
78268340 CACTTAAATTATTAACATATTTAATTT
1 CACTTAAATTATTAAAATAATTAATTT
78268367 TAATTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (28 bp):
CACTTAAATTATTAAAATAATTAATTTG
Found at i:78273503 original size:42 final size:43
Alignment explanation
Indices: 78273398--78273505 Score: 114
Period size: 43 Copynumber: 2.5 Consensus size: 43
78273388 CAGAAAGTAT
* * * * *
78273398 ATACAATGCCGACGTCCCAAAC-GTGGTCTTACATGTAGTCAA
1 ATACGATGCCGATGTCCCAAACAGTGGTCTTACAAGAAATCAA
* *
78273440 ACATCGATGCC-ACTGTCCCAAACAG-GGTCTTACAAGAAATCAG
1 ATA-CGATGCCGA-TGTCCCAAACAGTGGTCTTACAAGAAATCAA
78273483 ATACGATGCCGATGTCCCAAACA
1 ATACGATGCCGATGTCCCAAACA
78273506 TTATCTTACA
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
42 21 0.39
43 32 0.59
44 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (43 bp):
ATACGATGCCGATGTCCCAAACAGTGGTCTTACAAGAAATCAA
Found at i:78276009 original size:28 final size:27
Alignment explanation
Indices: 78275954--78276037 Score: 109
Period size: 27 Copynumber: 3.1 Consensus size: 27
78275944 AGCATGGCTG
* *
78275954 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
78275980 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
78276008 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
78276035 CCA
1 CCA
78276038 AGACGCTTCC
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
26 5 0.10
27 30 0.58
28 17 0.33
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:78277480 original size:24 final size:24
Alignment explanation
Indices: 78277453--78277523 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
78277443 CTAGATTTCC
**
78277453 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
78277477 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
78277501 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
78277524 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:78294254 original size:28 final size:28
Alignment explanation
Indices: 78294197--78294376 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
78294187 TAAATTGTGC
*
78294197 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78294224 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78294252 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
78294280 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
78294307 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
78294335 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
78294362 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78294377 GACTTAATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:78294261 original size:55 final size:55
Alignment explanation
Indices: 78294197--78294376 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
78294187 TAAATTGTGC
*
78294197 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
78294252 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
78294307 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
78294362 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78294377 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:78294336 original size:83 final size:82
Alignment explanation
Indices: 78294197--78294376 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
78294187 TAAATTGTGC
78294197 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
78294262 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
78294280 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
78294345 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
78294362 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78294377 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 22 0.24
83 70 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:78311677 original size:24 final size:24
Alignment explanation
Indices: 78311632--78311693 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
78311622 TCGAAGAAAT
* ** * *
78311632 TGATAGTAATAGCGGGAGCTATTA
1 TGATAGTAATAGTGCAAACTATGA
78311656 TGATAGTAATAGTGCAAACTATGA
1 TGATAGTAATAGTGCAAACTATGA
*
78311680 TGATAGTGATAGTG
1 TGATAGTAATAGTG
78311694 AGCTTTGTGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (24 bp):
TGATAGTAATAGTGCAAACTATGA
Found at i:78312048 original size:13 final size:13
Alignment explanation
Indices: 78312030--78312054 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78312020 AACCTTAACT
78312030 TGAATTTGTCTAG
1 TGAATTTGTCTAG
78312043 TGAATTTGTCTA
1 TGAATTTGTCTA
78312055 TTAATAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
TGAATTTGTCTAG
Found at i:78312345 original size:4 final size:4
Alignment explanation
Indices: 78312336--78312368 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
78312326 TTAAATTTTG
*
78312336 TTTA TTTA TTTA TTTA -TTC TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
78312369 CTTTATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 2 0.08
4 24 0.92
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:78312358 original size:15 final size:15
Alignment explanation
Indices: 78312340--78312386 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
78312330 ATTTTGTTTA
78312340 TTTATTTATTTATTC
1 TTTATTTATTTATTC
78312355 TTTATTTATTTATTC
1 TTTATTTATTTATTC
*
78312370 TTTATTT-TTAATTC
1 TTTATTTATTTATTC
78312384 TTT
1 TTT
78312387 TTGTTATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 9 0.29
15 22 0.71
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTATTTATTTATTC
Found at i:78313333 original size:25 final size:25
Alignment explanation
Indices: 78313264--78313338 Score: 84
Period size: 25 Copynumber: 3.0 Consensus size: 25
78313254 GGCCCGTGAA
78313264 AACATGAAAACAACTTTATTTAT-T
1 AACATGAAAACAACTTTATTTATCT
* *
78313288 ATATAT-ACAAATAA-TTATATTTATCT
1 A-ACATGA-AAACAACTT-TATTTATCT
78313314 AACATGAAAACAACTTTATTTATCT
1 AACATGAAAACAACTTTATTTATCT
78313339 GTTTGTTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
24 4 0.10
25 32 0.78
26 5 0.12
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (25 bp):
AACATGAAAACAACTTTATTTATCT
Found at i:78315774 original size:27 final size:26
Alignment explanation
Indices: 78315756--78315808 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
78315746 AAATTTGAGA
78315756 TTTAATTTTTATATTTAAAAATTAAT
1 TTTAATTTTTATATTTAAAAATTAAT
* *
78315782 TTTTATTTTTTTATTTAAAAATCTAAT
1 TTTAATTTTTATATTTAAAAAT-TAAT
78315809 AGTAAGTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTAATTTTTATATTTAAAAATTAAT
Found at i:78317178 original size:23 final size:23
Alignment explanation
Indices: 78317152--78317200 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
78317142 AAAAATACTT
78317152 ACCCTGAAAAATAATTAAAACTC
1 ACCCTGAAAAATAATTAAAACTC
78317175 ACCCTGAAAAATAATTAAAACTC
1 ACCCTGAAAAATAATTAAAACTC
78317198 ACC
1 ACC
78317201 ATTTTTATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.51, C:0.24, G:0.04, T:0.20
Consensus pattern (23 bp):
ACCCTGAAAAATAATTAAAACTC
Found at i:78331749 original size:27 final size:27
Alignment explanation
Indices: 78331719--78331777 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
78331709 ATTTTTGAAT
78331719 TTTAAA-TAATTT-TTTAAAATTTAAAAA
1 TTTAAATTAATTTATTTAAAA--TAAAAA
**
78331746 TTTAAATTTTTTTATTTAAAATAAAAA
1 TTTAAATTAATTTATTTAAAATAAAAA
78331773 TTTAA
1 TTTAA
78331778 TCTAAAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 17 0.61
28 4 0.14
29 7 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TTTAAATTAATTTATTTAAAATAAAAA
Found at i:78336595 original size:14 final size:13
Alignment explanation
Indices: 78336572--78336613 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
78336562 TAATCTTTGA
78336572 TTTATTATTTTAT
1 TTTATTATTTTAT
78336585 TTTAGTTA-TTTAT
1 TTTA-TTATTTTAT
*
78336598 TTTAATTGTTTTAT
1 TTT-ATTATTTTAT
78336612 TT
1 TT
78336614 GACTTGGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTATTATTTTAT
Found at i:78338621 original size:47 final size:46
Alignment explanation
Indices: 78338546--78338809 Score: 232
Period size: 47 Copynumber: 5.7 Consensus size: 46
78338536 GGTAAGTTAC
78338546 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCACATCTCAAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCAAGT
* * *
78338593 CGATGCCATGTCCCAGACATGGTTTTACACTGACT-ATCATCTCATAGA
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTCA-AGT
* * * * * *
78338641 CGATG-CATGTCCCAGATATGTCTTACACTGACTTACGTCTCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTC-AAGT
* * * *
78338687 CAATG-CATGTCCCAGACATGTCTTACACTAGTTCTCATCTCAATGT
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA-GT
* * * * * *
78338733 TGATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCATAAT-ATGG
1 CGATGCCATGTCCCAGACA-TGTCTTACACTGGCTCACAT-CTCAAGT
*
78338780 CTGATG-CGTGTCCCAGACATGTCTTACACT
1 C-GATGCCATGTCCCAGACATGTCTTACACT
78338810 AGCTACAATA
Statistics
Matches: 178, Mismatches: 30, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 67 0.38
47 80 0.45
48 29 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGT
Found at i:78338804 original size:140 final size:140
Alignment explanation
Indices: 78338552--78338809 Score: 360
Period size: 140 Copynumber: 1.8 Consensus size: 140
78338542 TTACCGATGC
* * *
78338552 CATGTCCCAGACATAGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAGACATGGTT
1 CATGTCCCAGACATAGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGACACGGTC
* *
78338617 TTACACTGACTATCATCTCATAGACGATGCATGTCCCAGATATGTCTTACACTGACTTACGTCTC
66 TTACACTGACTATCATATCATAGACGATGCATGTCCCAGACATGTCTTACACTGACTTACGTCTC
78338682 GAGGCCAATG
131 GAGGCCAATG
* * *
78338692 CATGTCCCAGACAT-GTCTTACACTAGTTCTCATCTCAATGTTGATGCCATGTCCCAGACACGGT
1 CATGTCCCAGACATAGTCTTACACTAGCTCACATCTCAA-GTCGATGCCATGTCCCAGACACGGT
* * * *
78338756 CTTACACTGGCTCTCATA--ATATGGCTGATGCGTGTCCCAGACATGTCTTACACT
65 CTTACACTGACTATCATATCATA-GAC-GATGCATGTCCCAGACATGTCTTACACT
78338810 AGCTACAATA
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
138 3 0.03
139 23 0.22
140 77 0.75
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACATAGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGACACGGTC
TTACACTGACTATCATATCATAGACGATGCATGTCCCAGACATGTCTTACACTGACTTACGTCTC
GAGGCCAATG
Found at i:78342225 original size:27 final size:27
Alignment explanation
Indices: 78342194--78342251 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
78342184 GTATACCTAG
*
78342194 GCCCCAGAT-TGATAAAATAACTGTTAT
1 GCCCC-GATGTGATAAAATAACTATTAT
* *
78342221 GCCCCTATGTGGTAAAATAACTATTAT
1 GCCCCGATGTGATAAAATAACTATTAT
78342248 GCCC
1 GCCC
78342252 TTATGGGATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (27 bp):
GCCCCGATGTGATAAAATAACTATTAT
Found at i:78346902 original size:23 final size:23
Alignment explanation
Indices: 78346876--78346922 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
78346866 TACGCAACAT
*
78346876 AGTTTAAAAAACTTCTGCAAGAA
1 AGTTTAAAAAACTTCAGCAAGAA
*
78346899 AGTTTAAAAAGCTTCAGCAAGAA
1 AGTTTAAAAAACTTCAGCAAGAA
78346922 A
1 A
78346923 TATTGTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.23
Consensus pattern (23 bp):
AGTTTAAAAAACTTCAGCAAGAA
Found at i:78353111 original size:19 final size:21
Alignment explanation
Indices: 78353089--78353132 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
78353079 TAAAATTTAA
*
78353089 AATTTTTATAAA-TATTTTG-
1 AATTTTTAAAAATTATTTTGT
78353108 AA-TTTTAAAAATTATTTTGT
1 AATTTTTAAAAATTATTTTGT
78353128 AATTT
1 AATTT
78353133 ATGTTTAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 2 0.10
21 2 0.10
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
AATTTTTAAAAATTATTTTGT
Found at i:78353113 original size:18 final size:20
Alignment explanation
Indices: 78353092--78353132 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
78353082 AATTTAAAAT
*
78353092 TTTTATAAA-TATTTTG-AA
1 TTTTAAAAATTATTTTGTAA
78353110 TTTTAAAAATTATTTTGTAA
1 TTTTAAAAATTATTTTGTAA
78353130 TTT
1 TTT
78353133 ATGTTTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 7 0.35
20 5 0.25
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTAAAAATTATTTTGTAA
Found at i:78361612 original size:13 final size:13
Alignment explanation
Indices: 78361596--78361620 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78361586 TATTTTCTTT
78361596 TTATTTTTTAATA
1 TTATTTTTTAATA
78361609 TTATTTTTTAAT
1 TTATTTTTTAAT
78361621 TATTTTCTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTTTTTAATA
Found at i:78361655 original size:32 final size:30
Alignment explanation
Indices: 78361607--78361672 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 30
78361597 TATTTTTTAA
* *
78361607 TATTATTTTTTAATTAT-TTTCTATCTATTT
1 TATTATATTTTAATTATGTTGCTA-CTATTT
78361637 TATTATATTTTACTATTATGTTGCTACTATTT
1 TATTATATTTTA--ATTATGTTGCTACTATTT
78361669 TATT
1 TATT
78361673 GTTATTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 11 0.35
32 15 0.48
33 5 0.16
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.65
Consensus pattern (30 bp):
TATTATATTTTAATTATGTTGCTACTATTT
Found at i:78366600 original size:10 final size:10
Alignment explanation
Indices: 78366558--78366608 Score: 57
Period size: 11 Copynumber: 4.8 Consensus size: 10
78366548 CACAAAAGTC
78366558 CTCTCATAATT
1 CTCTCA-AATT
78366569 CTCTCTAAATT
1 CTCTC-AAATT
*
78366580 CCCTCCAAATT
1 CTCT-CAAATT
78366591 CTCTCAAATT
1 CTCTCAAATT
*
78366601 TTCTCAAA
1 CTCTCAAA
78366609 GCTCTTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 13 0.37
11 20 0.57
12 2 0.06
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.39
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:78368391 original size:18 final size:18
Alignment explanation
Indices: 78368368--78368403 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
78368358 TGCCAAGTGC
*
78368368 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
78368386 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
78368404 ATTTCCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.08, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:78368410 original size:18 final size:18
Alignment explanation
Indices: 78368369--78368410 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
78368359 GCCAAGTGCG
* *
78368369 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATA
78368387 TATCCTAACCCTTATATA
1 TATCCTAACCCTTATATA
*
78368405 TTTCCT
1 TATCCT
78368411 TTTCCCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:78373117 original size:48 final size:48
Alignment explanation
Indices: 78372999--78373423 Score: 388
Period size: 48 Copynumber: 8.8 Consensus size: 48
78372989 GGTAAAATGT
* * * * **
78372999 CGATGCCATGTCCTAGACATGGTCTTAAACTGGCTCACATGTATCTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATA-GAG-GC
* * *
78373049 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTTACATATAGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
* * * * *
78373097 CGATGCCATGTCCTAGACATGGTATTACACTAGCTCTCATA-ACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATA-GAGGC
* * * * *
78373145 CAATGCCATGTTCCAAACATGTTCTTACACTA-CTTCACATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCACATATAGAGGC
* * * ** *
78373193 CGATGCTATGTCCCAAATATGGTCTTGTACTAGCTCACATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
* * *
78373241 CGATGCCATGTCCCAGACATGGTCTTGCATTAGCTCACATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
* * * * *
78373289 CTATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATA-ACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATA-GAGGC
* * * * * * * * *
78373337 CGATGCTATGTTCAAAACATGGTTTTACATTGGCTCACATATTGAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
* *
78373385 CGATGCCATGTCCCAGACATGATCTTACACTAGCCCACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
78373424 AATAACCCTA
Statistics
Matches: 304, Mismatches: 65, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
47 2 0.01
48 262 0.86
49 2 0.01
50 38 0.12
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
Found at i:78373171 original size:96 final size:96
Alignment explanation
Indices: 78372999--78373423 Score: 465
Period size: 96 Copynumber: 4.4 Consensus size: 96
78372989 GGTAAAATGT
* * * * **
78372999 CGATGCCATGTCCTAGACATGGTCTTAAACTGGCTCACATGTATCTGTGCCGATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA--TAACAATGCCGATGCCATGTTCCA
* * *
78373064 GACATGGTCTTACACTGGCTTACATATAGAGGC
64 AACATGGTCTTACACTGGCTCACATATTGAGGC
* * * *
78373097 CGATGCCATGTCCTAGACATGGTATTACACTAGCTCTCATAACAATGCCAATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAA
* *
78373162 CATGTTCTTACACT-ACTTCACATATTGAGGC
66 CATGGTCTTACACTGGC-TCACATATTGAGGC
* * * ** *** * * *
78373193 CGATGCTATGTCCCAAATATGGTCTTGTACTAGCTCACATATTGAGGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAA
* * *
78373258 CATGGTCTTGCATTAGCTCACATATTGAGGC
66 CATGGTCTTACACTGGCTCACATATTGAGGC
* * * * *
78373289 CTATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCTATGTTCAAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAA
* * *
78373354 CATGGTTTTACATTGGCTCACATATTGAAGC
66 CATGGTCTTACACTGGCTCACATATTGAGGC
* *
78373385 CGATGCCATGTCCCAGACATGATCTTACACTAGCCCACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
78373424 AATAACCCTA
Statistics
Matches: 270, Mismatches: 55, Indels: 6
0.82 0.17 0.02
Matches are distributed among these distances:
95 1 0.00
96 233 0.86
97 1 0.00
98 35 0.13
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACATATTGAGGC
Found at i:78373263 original size:144 final size:143
Alignment explanation
Indices: 78373001--78373423 Score: 438
Period size: 144 Copynumber: 2.9 Consensus size: 143
78372991 TAAAATGTCG
* * * * * * * *
78373001 ATGCCATGTCCTAGACATGGTCTTAAACTGGCTCACATGTATC-TGTGCCGATGCCATGTTCCAG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA--TAACAAG-GCCGATGCTATGTTCCAA
* * * * *
78373065 ACATGGTCTTACACTGGCTTACATATAGAGGCCGATGCCATGTCCTAGACATGGTATTACACTAG
63 ACATGGTCTT-TACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* *
78373130 CTCTCATAACAATGCCA
127 CTCACATAACAAGGCCA
* * *** * *
78373147 ATGCCATGTTCCAAACATGTTCTTACACTA-CTTCACATATTGAGGCCGATGCTATGTCCCAAAT
1 ATGCCATGTCCCAAACATGGTCTTACACTAGC-TCACATAACAAGGCCGATGCTATGTTCCAAAC
* * *
78373211 ATGGTCTTGTACTAGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTGCATTAGCT
65 ATGGTCTT-TACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
*** *
78373276 CACATATTGAGGCCT
129 CACATAACAAGGCCA
* * *
78373291 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCTATGTTCAAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCTATGTTCCAAACA
* * *
78373356 TGGT-TTTACATTGGCTCACATATTGAAGCCGATGCCATGTCCCAGACATGATCTTACACTAGCC
66 TGGTCTTTAC--TGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
78373420 CACA
129 CACA
78373424 AATAACCCTA
Statistics
Matches: 229, Mismatches: 43, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
142 3 0.01
143 2 0.01
144 192 0.84
145 3 0.01
146 29 0.13
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (143 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCTATGTTCCAAACA
TGGTCTTTACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
CATAACAAGGCCA
Found at i:78379811 original size:28 final size:28
Alignment explanation
Indices: 78379761--78379814 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
78379751 ACAGGGGTTT
78379761 TCACACGGCCTGGCACACGCCGTGTCCC
1 TCACACGGCCTGGCACACGCCGTGTCCC
78379789 TCACACGGCCAT-G-ACACGCCCGTGTC
1 TCACACGGCC-TGGCACACG-CCGTGTC
78379815 TCAGCTCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 5 0.21
28 18 0.75
29 1 0.04
ACGTcount: A:0.17, C:0.44, G:0.24, T:0.15
Consensus pattern (28 bp):
TCACACGGCCTGGCACACGCCGTGTCCC
Found at i:78384050 original size:48 final size:48
Alignment explanation
Indices: 78383932--78384256 Score: 305
Period size: 48 Copynumber: 6.7 Consensus size: 48
78383922 TGGTAAAATA
* ** * * **
78383932 CCGATGCCATGTCCTAGGCATGGTCTTACATTGGCTCTCATATATCGGTG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATA-AT-AATG
* * *
78383982 CCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAACAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
* * *
78384030 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAATAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
* * * * * * * *
78384078 CCGATGCTATGTTCCAAACATAGTCTTACAGTAGCTCACATATTGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
** * *
78384126 CTAATGCCATGTCCCATACATGGTCTTACACTAGCTCTCATAAGAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
* * * *
78384174 TCGATGCCATGTTCCAAATATGGTCTTACACT-GACT-T-ATATATTGATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTCATA-A-TAATG
* *
78384222 TCGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGC
78384257 CCACAAATAA
Statistics
Matches: 225, Mismatches: 46, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
46 3 0.01
47 3 0.01
48 182 0.81
49 2 0.01
50 35 0.16
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
Found at i:78384197 original size:144 final size:144
Alignment explanation
Indices: 78383984--78384261 Score: 403
Period size: 144 Copynumber: 1.9 Consensus size: 144
78383974 TATCGGTGCC
*
78383984 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAACAATGCCGATGCCATGTTCCAAAC
1 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAAC
* * * * *
78384049 ATGGTCTTACACTGGCTCACATAATAATGCCGATGCTATGTTCCAAACATAGTCTTACAGTAGCT
66 ATGGTCTTACACTGACTCACATAATAATGCCGATGCCATGTCCCAAACATAGTCTTACACTAGCC
78384114 CACATATTGAGGCT
131 CACATATTGAGGCT
* * * *
78384128 AATGCCATGTCCCATACATGGTCTTACACTAGCTCTCATAAGAATGTCGATGCCATGTTCCAAAT
1 AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAAC
* * * * * * *
78384193 ATGGTCTTACACTGACTTATATATTGATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCC
66 ATGGTCTTACACTGACTCACATAATAATGCCGATGCCATGTCCCAAACATAGTCTTACACTAGCC
78384258 CACA
131 CACA
78384262 AATAACCCTA
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
144 117 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (144 bp):
AATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTGACTCACATAATAATGCCGATGCCATGTCCCAAACATAGTCTTACACTAGCC
CACATATTGAGGCT
Found at i:78385515 original size:21 final size:21
Alignment explanation
Indices: 78385491--78385548 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
78385481 AACACCCACT
*
78385491 ACCA-AATCCCCTGCCGGAGGA
1 ACCACAAT-CCCTGCCGGAGCA
78385512 ACCACAATCCCTGCCGGAGCA
1 ACCACAATCCCTGCCGGAGCA
* *
78385533 ACCACAACCCCCGCCG
1 ACCACAATCCCTGCCG
78385549 AAAGGTGAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 30 0.91
22 3 0.09
ACGTcount: A:0.28, C:0.47, G:0.19, T:0.07
Consensus pattern (21 bp):
ACCACAATCCCTGCCGGAGCA
Found at i:78387524 original size:18 final size:18
Alignment explanation
Indices: 78387503--78387538 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
78387493 CAACATTACG
78387503 TGATAAAAATTTTATTCA
1 TGATAAAAATTTTATTCA
78387521 TGATAAAAATTTTATTCA
1 TGATAAAAATTTTATTCA
78387539 AAAACCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (18 bp):
TGATAAAAATTTTATTCA
Found at i:78389319 original size:125 final size:125
Alignment explanation
Indices: 78388846--78389405 Score: 744
Period size: 126 Copynumber: 4.5 Consensus size: 125
78388836 ACAAATAGGA
* * * *
78388846 ACTACTGTAGCAAAAGAGCATCCATGTGGGAGCTTTTTTTTC-GTAATTTTACTGACAGTACATC
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGC--TTTTTTCAGTAATTTTGCTGACAGTGCATC
* ** *
78388910 CTGCTTGAAGCGTTTTGGACACTATTTATTCAGAAACATCTTCTC-GAA--A----TTA-AT
64 CTGCTTGAAGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTATTTTTTAGAT
* * *
78388964 ACTATTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* *
78389029 GCTTGATGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTATTTTTCCAGAT
66 GCTTGAAGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTATTTTT-TAGAT
* * * * * *
78389090 ACTACTGAAGCAAAAGAGCGTCCATGTGGAAGCTTTTTTTTAGTAATTTTGCTGACAATGTATCC
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGC-TTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * *
78389155 TACTTGAAGCATTTTGGACACTATTTTTTCAGAAATGTCTCCTCAAAATTATTTTTTAGAT
65 TGCTTGAAGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTATTTTTTAGAT
** *
78389216 AAAACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* * * *
78389281 GCTTGAAGCGTTTTCGACATTATTTGTTCAGAAATGTCTTCTTAAAATTATTTTTTTAGAT
66 GCTTGAAGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTA-TTTTTTAGAT
78389342 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGC-TTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
78389406 AATTTAATTA
Statistics
Matches: 388, Mismatches: 42, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
116 7 0.02
117 61 0.16
118 32 0.08
120 1 0.00
124 1 0.00
125 102 0.26
126 104 0.27
127 80 0.21
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (125 bp):
ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
GCTTGAAGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTATTTTTTAGAT
Found at i:78389997 original size:20 final size:20
Alignment explanation
Indices: 78389974--78390093 Score: 72
Period size: 19 Copynumber: 6.2 Consensus size: 20
78389964 AACATTTTAG
78389974 AAATTATATAAAATATTATA
1 AAATTATATAAAATATTATA
**
78389994 AAATTAT-GGAAATATT-TA
1 AAATTATATAAAATATTATA
** *
78390012 AAAAAATATAAAATACTATA
1 AAATTATATAAAATATTATA
* *
78390032 AAAGGTCATAGAAAAT-TATATA
1 AAA--TTATATAAAATAT-TATA
* *
78390054 AAATT-TATTAAA-ATGATA
1 AAATTATATAAAATATTATA
* *
78390072 AAAATATA-AAAAAATTATA
1 AAATTATATAAAATATTATA
78390091 AAA
1 AAA
78390094 ATCATAAATT
Statistics
Matches: 74, Mismatches: 18, Indels: 17
0.68 0.17 0.16
Matches are distributed among these distances:
18 17 0.23
19 29 0.39
20 13 0.18
22 15 0.20
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (20 bp):
AAATTATATAAAATATTATA
Found at i:78390058 original size:10 final size:10
Alignment explanation
Indices: 78389974--78390095 Score: 55
Period size: 10 Copynumber: 12.4 Consensus size: 10
78389964 AACATTTTAG
78389974 AAATTATATA
1 AAATTATATA
78389984 AAA-TATTATA
1 AAATTA-TATA
**
78389994 AAATTATGGA
1 AAATTATATA
78390004 AATATT-TA-A
1 AA-ATTATATA
*
78390013 AAA-AATATA
1 AAATTATATA
78390022 AAA-TACTATA
1 AAATTA-TATA
* *
78390032 AAAGGTCATAGA
1 AAA--TTATATA
78390044 AAATTATATA
1 AAATTATATA
78390054 AAATT-TATTA
1 AAATTATA-TA
*
78390064 AAATGATA-A
1 AAATTATATA
*
78390073 AAA-TATAAAA
1 AAATTAT-ATA
78390083 AAATTATA-A
1 AAATTATATA
78390092 AAAT
1 AAAT
78390096 CATAAATTCT
Statistics
Matches: 87, Mismatches: 11, Indels: 29
0.69 0.09 0.23
Matches are distributed among these distances:
8 5 0.06
9 22 0.25
10 43 0.49
11 10 0.11
12 6 0.07
13 1 0.01
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (10 bp):
AAATTATATA
Done.