Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 24 of 316
Found at i:6881500 original size:25 final size:25
Alignment explanation
Indices: 6881344--6881501 Score: 103
Period size: 25 Copynumber: 6.3 Consensus size: 25
6881334 GATAATATTA
* ** *
6881344 AAAATATGTACATAATATAGTGTTA
1 AAAATATATACATAATATAGAATTT
*
6881369 AAAATACATACATAATATAG---TT
1 AAAATATATACATAATATAGAATTT
* * *
6881391 AAGATATATACATAAGATA-ACATGTA
1 AAAATATATACATAATATAGA-AT-TT
*
6881417 AAAATATATACATAAATAATATAATATT
1 AAAATATATACAT-AAT-ATAGAAT-TT
* *
6881445 AAAGATATATACATAAAATAG--TAT
1 AAA-ATATATACATAATATAGAATTT
* *
6881469 AATATATATACGTAATATAGAATTT
1 AAAATATATACATAATATAGAATTT
6881494 AAAATATA
1 AAAATATA
6881502 CCTAATATAT
Statistics
Matches: 103, Mismatches: 19, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
22 17 0.17
23 15 0.15
24 3 0.03
25 28 0.27
26 13 0.13
27 5 0.05
28 11 0.11
29 11 0.11
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (25 bp):
AAAATATATACATAATATAGAATTT
Found at i:6881529 original size:20 final size:20
Alignment explanation
Indices: 6881504--6881548 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6881494 AAAATATACC
*
6881504 TAATATATTA-AAAGAATATA
1 TAATATAATATAAAGAA-ATA
*
6881524 TAATATAATATTAAGAAATA
1 TAATATAATATAAAGAAATA
6881544 TAATA
1 TAATA
6881549 ATAACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
TAATATAATATAAAGAAATA
Found at i:6881537 original size:23 final size:23
Alignment explanation
Indices: 6881508--6881551 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
6881498 TATACCTAAT
6881508 ATATTAAAAGAATAT-ATAATATA
1 ATATTAAAA-AATATAATAATATA
*
6881531 ATATTAAGAAATATAATAATA
1 ATATTAAAAAATATAATAATA
6881552 ACAAAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATTAAAAAATATAATAATATA
Found at i:6882106 original size:30 final size:31
Alignment explanation
Indices: 6882036--6882180 Score: 183
Period size: 30 Copynumber: 4.8 Consensus size: 31
6882026 TAGGTACAAG
* *
6882036 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
* ** *
6882066 AGGTAATGGAGCAA-GTGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
*
6882096 TGGTGGTGGAG-AAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
*
6882126 TGGTGGTGGA-AAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
6882156 TGGTGGTGGA-AAAGGTGTGGCTAGT
1 TGGTGGTGGAGAAAGGTGTGGCTAGT
6882181 TGAGAAAAGT
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
29 2 0.02
30 102 0.98
ACGTcount: A:0.21, C:0.04, G:0.49, T:0.26
Consensus pattern (31 bp):
TGGTGGTGGAGAAAGGTGTGGCTAGTGGAGT
Found at i:6888815 original size:12 final size:12
Alignment explanation
Indices: 6888798--6888822 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6888788 TTGGGTTAGT
6888798 GTTTTGGGCTAA
1 GTTTTGGGCTAA
6888810 GTTTTGGGCTAA
1 GTTTTGGGCTAA
6888822 G
1 G
6888823 GGTTTTGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.36, T:0.40
Consensus pattern (12 bp):
GTTTTGGGCTAA
Found at i:6889319 original size:14 final size:15
Alignment explanation
Indices: 6889300--6889329 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
6889290 TTAAAATAAT
6889300 ATAAAATTAT-ATTA
1 ATAAAATTATAATTA
6889314 ATAAAATTATAATTA
1 ATAAAATTATAATTA
6889329 A
1 A
6889330 AAACAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATAAAATTATAATTA
Found at i:6889327 original size:20 final size:20
Alignment explanation
Indices: 6889282--6889328 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
6889272 ATTGTGGAGA
6889282 ATAATTATTTAAAATAATAT
1 ATAATTATTTAAAATAATAT
*
6889302 AAAATTATATTAATAA-AAT-T
1 ATAATTAT-TTAA-AATAATAT
6889322 ATAATTA
1 ATAATTA
6889329 AAAACAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 14 0.61
21 7 0.30
22 2 0.09
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
ATAATTATTTAAAATAATAT
Found at i:6889781 original size:19 final size:20
Alignment explanation
Indices: 6889746--6889784 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
6889736 TTAAATAAAT
6889746 TATTAAAAATTTAAAAAAAAA
1 TATTAAAAA-TTAAAAAAAAA
6889767 TATTAAAAA-TAAAAAAAA
1 TATTAAAAATTAAAAAAAA
6889785 TCTAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
TATTAAAAATTAAAAAAAAA
Found at i:6892050 original size:15 final size:16
Alignment explanation
Indices: 6892025--6892062 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
6892015 TGAATTGGTT
*
6892025 TTTTCTATTTTA-AATA
1 TTTT-TATTTTATAAAA
6892041 TTTTTATTTTATAAAA
1 TTTTTATTTTATAAAA
6892057 TTTTTA
1 TTTTTA
6892063 ATAATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTTATTTTATAAAA
Found at i:6893937 original size:20 final size:19
Alignment explanation
Indices: 6893903--6893942 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
6893893 ATACCAACCC
*
6893903 AATACAAATATTAAATTTT
1 AATACAAATATTAAAATTT
*
6893922 AATATAAATGATTAAAATTT
1 AATACAAAT-ATTAAAATTT
6893942 A
1 A
6893943 CATTTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (19 bp):
AATACAAATATTAAAATTT
Found at i:6895732 original size:17 final size:17
Alignment explanation
Indices: 6895710--6895743 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
6895700 ATGAGCTCTA
6895710 GTTA-TTATTATAGAGTT
1 GTTATTTATTAT-GAGTT
6895727 GTTATTTATTATGAGTT
1 GTTATTTATTATGAGTT
6895744 AATATTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.56
Consensus pattern (17 bp):
GTTATTTATTATGAGTT
Found at i:6895936 original size:15 final size:14
Alignment explanation
Indices: 6895916--6895953 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
6895906 TAATAATTAC
6895916 TTTTAAAATTTCAA
1 TTTTAAAATTTCAA
*
6895930 GTTTTAAAATTTTAA
1 -TTTTAAAATTTCAA
6895945 -TTTAAAATT
1 TTTTAAAATT
6895954 ATTTCTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.41
15 13 0.59
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (14 bp):
TTTTAAAATTTCAA
Found at i:6898292 original size:36 final size:36
Alignment explanation
Indices: 6898252--6898323 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
6898242 TGCAGGTCAC
* *
6898252 TTAAAGCTTTTCTTCTTAATTTTTGTTCTCTTTTGG
1 TTAAAGCTTTTCTTCTTAATTTCTATTCTCTTTTGG
6898288 TTAAAGCTTTTCTTCTTAATTTCTATTCTCTTTTGG
1 TTAAAGCTTTTCTTCTTAATTTCTATTCTCTTTTGG
6898324 GTTTCTAGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.60
Consensus pattern (36 bp):
TTAAAGCTTTTCTTCTTAATTTCTATTCTCTTTTGG
Found at i:6906778 original size:16 final size:16
Alignment explanation
Indices: 6906757--6906789 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6906747 ATATTAACAT
6906757 AAACTAACTCAAAAAC
1 AAACTAACTCAAAAAC
*
6906773 AAACTATCTCAAAAAC
1 AAACTAACTCAAAAAC
6906789 A
1 A
6906790 CCTCGAACCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.24, G:0.00, T:0.15
Consensus pattern (16 bp):
AAACTAACTCAAAAAC
Found at i:6910841 original size:131 final size:130
Alignment explanation
Indices: 6910607--6910934 Score: 475
Period size: 131 Copynumber: 2.5 Consensus size: 130
6910597 AGTTTTATAA
* * *
6910607 TCATGTCTTTAAAAATTCTTTAAAACGAAGGAAATGTTTGATGTTTGGCAATTCGGGGAATCGTG
1 TCATGTCTTTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTC-GGGAATCGTG
* *
6910672 CCCTATCGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCA
65 CCCTATCGTGCTGGGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCA
*
6910737 T
130 C
* *
6910738 TCATGTCTTTAAAAATTCTTTAAAACGAAGGCAACGTTCGATGTTTGGTAATTCGGGAAATCGTG
1 TCATGTCTTTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGG-AATCGTG
*
6910803 CCCTATCGTGCTGTGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCA
65 CCCTATCGTGCTGGGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCA
6910868 C
130 C
** * * *
6910869 TCATGT-TTTCTAAATTC--TAAAAC-AAGGCAATGTTCAATGTCTAGAAATTCGAGGAATCGTG
1 TCATGTCTTTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCG-GGAATCGTG
6910930 CCCTA
65 CCCTA
6910935 CTTTGCTGGG
Statistics
Matches: 180, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
127 35 0.19
128 8 0.04
130 12 0.07
131 125 0.69
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (130 bp):
TCATGTCTTTAAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGAATCGTGC
CCTATCGTGCTGGGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCAC
Found at i:6922451 original size:87 final size:89
Alignment explanation
Indices: 6922296--6922859 Score: 586
Period size: 87 Copynumber: 6.4 Consensus size: 89
6922286 GTGAATTCAC
* * * *
6922296 AGATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCTTAAGTA
1 AGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGACAGCAAGCCTTAACCCCCTAAGTA
*
6922361 GTAGGGTAACAGGCCGAAGATTGT
66 GTAGGGTAACAGGCTGAAGATTGT
** * ** * * * *
6922385 AGATCTTGCCTTCCT-AAGCAGTAGTGGAGCAGATCGAAGA-AGTAAGGCTTAACCCCCTAAGTA
1 AGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGACAGCAAGCCTTAACCCCCTAAGTA
*
6922448 GTAGGGTAACAGGCTAAAGATTGT
66 GTAGGGTAACAGGCTGAAGATTGT
* * ** * * *
6922472 AGATCTTGTTTCCCTAAA-CAGTAGTGGAGCAAATCAAAGA-AGCAAGCCTTAACCACCTAAGTA
1 AGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGACAGCAAGCCTTAACCCCCTAAGTA
* * * *
6922535 GTAGGTTAATAGGATGAAGATTGA
66 GTAGGGTAACAGGCTGAAGATTGT
* * * * * *
6922559 AGATCTTATCTCCCTGAAGTTGCAGTGGAATAGATCGAAGACGGTGAA-CCTTAACCCCCTAAGT
1 AGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGACAG-CAAGCCTTAACCCCCTAAGT
* *
6922623 AGTAGGGTAACAAGCT-AA-ATTGC
65 AGTAGGGTAACAGGCTGAAGATTGT
* * * * *
6922646 ATATCTTATCTCCCTAAAGTTGCAGTGGAACAGATCAAAGAAAGCAAGCCTTAACCCCCTCAGTG
1 AGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGACAGCAAGCCTTAACCCCCTAAGTA
* **
6922711 GTAGGGTAACAGGTTGAAGATCAT
66 GTAGGGTAACAGGCTGAAGATTGT
* * * * *
6922735 AGATCTTGTCTCCCTAAAGTTGCAGTGGAACAGATCAAAGACGGTGAA-CCTTAACCCCCTAAGC
1 AGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGACAG-CAAGCCTTAACCCCCTAAGT
* *
6922799 AGTAGGGTAACAGGCTGAAAATTGC
65 AGTAGGGTAACAGGCTGAAGATTGT
* * *
6922824 AGATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATC
1 AGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATC
6922860 GAAGCCACAA
Statistics
Matches: 392, Mismatches: 75, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
86 2 0.01
87 197 0.50
88 42 0.11
89 147 0.38
90 4 0.01
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (89 bp):
AGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGACAGCAAGCCTTAACCCCCTAAGTA
GTAGGGTAACAGGCTGAAGATTGT
Found at i:6922699 original size:176 final size:175
Alignment explanation
Indices: 6922295--6922859 Score: 665
Period size: 176 Copynumber: 3.2 Consensus size: 175
6922285 GGTGAATTCA
* * **
6922295 CAGATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCAAAGACGGCAAGCCTTAACCCCTTAAGT
1 CAGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGAAAGCAAGCCTTAACCCC-TAAGT
** * * * ** * *
6922360 AGTAGGGTAACAGGCCGAAGATTGTAGATCTTGCCTTCCTAAGCAGTAGTGGAGCAGATCGAAGA
65 AGTAGGGTAACAGGATGAAGATTGAAGATCTTGTCTCCCTAAGTTGCAGTGGAACAGATCGAAGA
* *
6922425 -AGT-AAGGCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTG
130 CGGTGAA-CCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAA-ATTG
* * * ** * *
6922471 TAGATCTTGTTTCCCTAAA-CAGTAGTGGAGCAAATCAAAG-AAGCAAGCCTTAACCACCTAAGT
1 CAGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGAAAGCAAGCCTTAACC-CCTAAGT
* * * *
6922534 AGTAGGTTAATAGGATGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGTGGAATAGATCGAAG
65 AGTAGGGTAACAGGATGAAGATTGAAGATCTTGTCTCCCT-AAGTTGCAGTGGAACAGATCGAAG
*
6922599 ACGGTGAACCTTAACCCCCTAAGTAGTAGGGTAACAAGCT-AAATTG
129 ACGGTGAACCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAATTG
* * *
6922645 CATATCTTATCTCCCTAAAGTTGCAGTGGAACAGATCAAAGAAAGCAAGCCTTAACCCCCTCAGT
1 CAGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGAAAGCAAGCCTTAA-CCCCTAAGT
* * * *
6922710 GGTAGGGTAACAGGTTGAAGA-TCATAGATCTTGTCTCCCTAAAGTTGCAGTGGAACAGATCAAA
65 AGTAGGGTAACAGGATGAAGATTGA-AGATCTTGTCTCCCT-AAGTTGCAGTGGAACAGATCGAA
*
6922774 GACGGTGAACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTG
128 GACGGTGAACCTTAACCCCCTAAGTAGTAGGGTAACAGGCT-AAAATTG
* * *
6922823 CAGATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATC
1 CAGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATC
6922860 GAAGCCACAA
Statistics
Matches: 328, Mismatches: 51, Indels: 18
0.83 0.13 0.05
Matches are distributed among these distances:
174 69 0.21
175 59 0.18
176 158 0.48
177 4 0.01
178 38 0.12
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (175 bp):
CAGATCTTATCTCCCTAAAGTTGTAGTGGAACAGATCAAAGAAAGCAAGCCTTAACCCCTAAGTA
GTAGGGTAACAGGATGAAGATTGAAGATCTTGTCTCCCTAAGTTGCAGTGGAACAGATCGAAGAC
GGTGAACCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAATTG
Found at i:6925558 original size:130 final size:129
Alignment explanation
Indices: 6925267--6925656 Score: 489
Period size: 130 Copynumber: 3.0 Consensus size: 129
6925257 GAATTTAGAG
* * * * *
6925267 AACATGAGTGAAATTTTAAAGGAATATTCGACTATTTTGAACAAACAGGAAATTGCAACCCAGCA
1 AACATGAGTGAAATTTCAAAGGAATATTCGATTGTTTTGAACAAAGA-GAAATCGCAACCCAGCA
* * * ** * **
6925332 TGATAAGGCACGATTCCCCAAATTGT-CAAACATCGAGTATTACCTTCGTTTTGAAGAGCTTTTA
65 CGATAGGGCACGATT-CCCGAATT-TCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTA
6925396 AA
128 AA
* * *
6925398 GAC-TCGAGTGAAATTCCAAAGGAATCTTCGATTGTTTTGAACAAATGAGAAATCGCAACCCAGC
1 AACAT-GAGTGAAATTTCAAAGGAATATTCGATTGTTTTGAACAAA-GAGAAATCGCAACCCAGC
* * *
6925462 ACGATAGGGCACGATTCTCGAATTTCCATACATCGAGTATCGCCTTTGTTTTAAAGAATTTTTAA
64 ACGATAGGGCACGATTCCCGAATTTCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTAA
6925527 A
129 A
* *
6925528 AACATGAGTGAAATTTCGAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCGCAACCCAGCA
1 AACATGAGTGAAATTTCAAAGGAATATTCGATTGTTTTGAACAAA-GAGAAATCGCAACCCAGCA
* * *
6925593 CGATAGGGCACGATTCCCGAATTGCCAAACATTGAGTATCGCCTTCG-CTTAAAGAATTTTTAAA
65 CGATAGGGCACGATTCCCGAATTTCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTAAA
6925657 TGAATAATTA
Statistics
Matches: 224, Mismatches: 31, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
129 17 0.08
130 139 0.62
131 67 0.30
132 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (129 bp):
AACATGAGTGAAATTTCAAAGGAATATTCGATTGTTTTGAACAAAGAGAAATCGCAACCCAGCAC
GATAGGGCACGATTCCCGAATTTCCAAACATCGAGTATCGCCTTCGTTTTAAAGAATTTTTAAA
Found at i:6926750 original size:18 final size:17
Alignment explanation
Indices: 6926729--6926781 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
6926719 GTATAGGTTT
6926729 AATAATGTATATAAATCA
1 AATAATGTATATAAAT-A
6926747 AATATATGTA-ATAATATA
1 AATA-ATGTATATAA-ATA
*
6926765 AATAA-GTATAAAAATA
1 AATAATGTATATAAATA
6926781 A
1 A
6926782 TTTAAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
16 7 0.23
17 4 0.13
18 13 0.42
19 7 0.23
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (17 bp):
AATAATGTATATAAATA
Found at i:6939364 original size:73 final size:73
Alignment explanation
Indices: 6939183--6939470 Score: 391
Period size: 73 Copynumber: 3.9 Consensus size: 73
6939173 CTTTTCAAGG
* * * * * *
6939183 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTACTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
6939248 GTTTTTC-
66 GTTTGTCA
* *
6939255 AAAATCAACTCATATTGCTAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
6939320 GTTTGTCA
66 GTTTGTCA
* * *
6939328 AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGACAAGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
6939393 GTTTGTCA
66 GTTTGTCA
* * **
6939401 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
6939465 TCTGTT
63 TCTGTT
6939471 CTTCAATTTC
Statistics
Matches: 193, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
72 65 0.34
73 103 0.53
75 25 0.13
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTGTCA
Found at i:6939598 original size:75 final size:73
Alignment explanation
Indices: 6939475--6939705 Score: 284
Period size: 75 Copynumber: 3.1 Consensus size: 73
6939465 TCTGTTCTTC
* * *
6939475 AATTTCTATTCGTAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGA
6939540 GGTATTTTT
65 GGTATTTTT
* *
6939549 AAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTG
1 -AATTTCTATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTG
* *
6939614 AGGTAATTTC
64 AGGTATTTTT
* * * * *
6939624 AATTTCTGTTTGTC-AAAAATTAAATCATATTGCGAGAGGTGAGTTGAGTCTCGGCTTACATGCT
1 AATTTCTATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCT
*
6939688 GAGGTCTTTTT
63 GAGGTATTTTT
6939699 AATTTCT
1 AATTTCT
6939706 GCTTTTCAAT
Statistics
Matches: 135, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
72 2 0.01
73 34 0.25
74 12 0.09
75 87 0.64
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (73 bp):
AATTTCTATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAG
GTATTTTT
Found at i:6939616 original size:163 final size:161
Alignment explanation
Indices: 6939310--6939633 Score: 452
Period size: 163 Copynumber: 2.0 Consensus size: 161
6939300 CTGAGGTAAT
* * * *
6939310 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGACAAGCT
1 TTCAATTTCTATTCGTAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAAGCT
* * * *
6939375 GAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
66 GAGGTAATTTAAATTTCTATTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG
* **
6939440 CTCACATGCTGAGGTCTTTTCAATTTCTGTTC
131 C-CACACGCTGAGGTAATTTCAATTTCTGTTC
* * *
6939472 TTCAATTTCTATTCGTAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTCAATTTCTATTCGT-AAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAAGC
* *
6939537 TGAGGTATTTTTAAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT
65 TGAGGTA-ATTTAAATTTCTATTTGTC-AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT
*
6939602 CGG-GACACGCTGAGGTAATTTCAATTTCTGTT
128 CGGCCACACGCTGAGGTAATTTCAATTTCTGTT
6939634 TGTCAAAAAT
Statistics
Matches: 142, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
162 14 0.10
163 75 0.53
164 15 0.11
165 38 0.27
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (161 bp):
TTCAATTTCTATTCGTAAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAAGCT
GAGGTAATTTAAATTTCTATTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG
CCACACGCTGAGGTAATTTCAATTTCTGTTC
Found at i:6939671 original size:238 final size:236
Alignment explanation
Indices: 6939255--6939719 Score: 772
Period size: 238 Copynumber: 2.0 Consensus size: 236
6939245 TTTGTTTTTC
*
6939255 AAAATCAACTCATATTGCTAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCTAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTAAATTTCT
* *
6939320 GTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGGACAAGCTGAGGTAATTT
66 ATTTGTCAAAAATCAACTCATATTGCGAAAGGTAAGTTGAGCCTCGGGACAAGCTGAGGTAATTT
*
6939385 CAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCT
131 CAATTTCTGTTTGTCAAAAATTAAATCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCT
6939450 GAGGTCTTTTCAATTTCTG-TTCTTCAATTTCTATTCGTAAA
196 GAGGTCTTTTCAATTTCTGCTT-TTCAATTTCTATTCGTAAA
* *
6939491 AAAATCAACTCATATTG-TGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAATCAACTCATATTGCT-AGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTA-ATTTAAATTT
* * *
6939555 CTATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
64 CTATTTGTC-AAAAATCAACTCATATTGCGAAAGGTAAGTTGAGCCTCGGGACAAGCTGAGGTAA
* *
6939620 TTTCAATTTCTGTTTGTCAAAAATTAAATCATATTGCGAGAGGTGAGTTGAGTCTCGGCTTACAT
128 TTTCAATTTCTGTTTGTCAAAAATTAAATCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
*
6939685 GCTGAGGTCTTTTTAATTTCTGCTTTTCAATTTCT
193 GCTGAGGTCTTTTCAATTTCTGCTTTTCAATTTCT
6939720 GTTTTTTTCA
Statistics
Matches: 213, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
235 1 0.00
236 50 0.23
237 15 0.07
238 145 0.68
239 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (236 bp):
AAAATCAACTCATATTGCTAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTAAATTTCT
ATTTGTCAAAAATCAACTCATATTGCGAAAGGTAAGTTGAGCCTCGGGACAAGCTGAGGTAATTT
CAATTTCTGTTTGTCAAAAATTAAATCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCT
GAGGTCTTTTCAATTTCTGCTTTTCAATTTCTATTCGTAAA
Found at i:6939725 original size:14 final size:14
Alignment explanation
Indices: 6939694--6939744 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
6939684 TGCTGAGGTC
6939694 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
6939707 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
6939721 TTTTTTTCAATTTATA
1 --TTTTTCAATTTCTG
6939737 TTTTTCAA
1 TTTTTCAA
6939745 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
16 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.65
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:6939740 original size:16 final size:16
Alignment explanation
Indices: 6939708--6939741 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6939698 TAATTTCTGC
* *
6939708 TTTTCAATTTCTGTTT
1 TTTTCAATTTATATTT
6939724 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
6939740 TT
1 TT
6939742 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:6940057 original size:74 final size:76
Alignment explanation
Indices: 6939816--6940066 Score: 373
Period size: 77 Copynumber: 3.3 Consensus size: 76
6939806 AAATCTACTT
*
6939816 TTGCGAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAG
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAA-
6939881 AATCAACTCATA
65 AATCAACTCATA
* *
6939893 TTGTGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTTAATTTCTGCTTTTCAAAAA
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTC-AAAA
6939958 AATCAACTCATA
65 AATCAACTCATA
* * ** *
6939970 TTGCGAGAGGTGAGTTGAGCC-TCGGTCACACGCTGAGGC-GTTTTCAATTTCTGCTTTTC-AAA
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGA-GCTATTTTCAATTTCTGCTTTTCAAAA
6940032 AATCAACTCATA
65 AATCAACTCATA
*
6940044 TTGCGAGATGTGAGTTGAGCCTT
1 TTGCGAGAGGTGAGTTGAGCCTT
6940067 GGGTTTACAT
Statistics
Matches: 160, Mismatches: 11, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
74 35 0.22
75 1 0.01
76 29 0.18
77 91 0.57
78 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.35
Consensus pattern (76 bp):
TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAA
ATCAACTCATA
Found at i:6940814 original size:30 final size:30
Alignment explanation
Indices: 6940778--6940952 Score: 228
Period size: 30 Copynumber: 5.8 Consensus size: 30
6940768 ACTTTTCTCA
*
6940778 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
6940808 ACTAGCCACACATTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
6940838 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
6940868 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
6940898 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
6940928 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
6940953 CTTGTACCTA
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 3 0.02
30 127 0.98
ACGTcount: A:0.27, C:0.48, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:6941483 original size:24 final size:23
Alignment explanation
Indices: 6941435--6941495 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
6941425 CCTTTTTTGT
*
6941435 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
6941458 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
*
6941482 TATTAGGTATATTT
1 TATTA-TTATATTT
6941496 TAAATTCTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
23 8 0.25
24 19 0.59
25 5 0.16
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:6941532 original size:27 final size:27
Alignment explanation
Indices: 6941502--6941619 Score: 82
Period size: 27 Copynumber: 4.5 Consensus size: 27
6941492 ATTTTAAATT
6941502 CTATATTACGTATATATATATTTTATA
1 CTATATTACGTATATATATATTTTATA
* * * *
6941529 CTATTTTA--TGTATATATCTTTAATA
1 CTATATTACGTATATATATATTTTATA
* ** *
6941554 TTATATTATTTATATATATATTTTTTA
1 CTATATTACGTATATATATATTTTATA
* * * *
6941581 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTA-CGTATATATATATTTTATA
*
6941607 CTATATTATGTAT
1 CTATATTACGTAT
6941620 GTATTTTTAA
Statistics
Matches: 68, Mismatches: 19, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
25 20 0.29
26 10 0.15
27 38 0.56
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (27 bp):
CTATATTACGTATATATATATTTTATA
Found at i:6941542 original size:25 final size:25
Alignment explanation
Indices: 6941449--6941656 Score: 88
Period size: 25 Copynumber: 8.2 Consensus size: 25
6941439 ATTATATTTC
*
6941449 TTAATATTATATTA--TATATATAT
1 TTAATACTATATTATGTATATATAT
** * *
6941472 TCTTTTAATATATTAGGTATAT-T-T
1 T-TAATACTATATTATGTATATATAT
* * *
6941496 TAAATTCTATATTACGTATATATATAT
1 TTAATACTATATTA--TGTATATATAT
* * *
6941523 TTTATACTATTTTATGTATATATCT
1 TTAATACTATATTATGTATATATAT
* *
6941548 TTAATATTATATTATTTATATATATATTTT
1 TTAATACTATATTA--TGTATATATA---T
** * *
6941578 TTACATGTTATCTTATGTATATAT-C
1 TTA-ATACTATATTATGTATATATAT
* *
6941603 TT-A-ACTATATTATGTATGTATTT
1 TTAATACTATATTATGTATATATAT
* * *
6941626 TTAACACTATATTATGTACATATTT
1 TTAATACTATATTATGTATATATAT
6941651 TTAATA
1 TTAATA
6941657 TTATCACGTA
Statistics
Matches: 136, Mismatches: 33, Indels: 30
0.68 0.17 0.15
Matches are distributed among these distances:
22 14 0.10
23 12 0.09
24 13 0.10
25 51 0.38
26 6 0.04
27 19 0.14
29 8 0.06
30 4 0.03
31 9 0.07
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (25 bp):
TTAATACTATATTATGTATATATAT
Found at i:6941659 original size:20 final size:20
Alignment explanation
Indices: 6941634--6941689 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
6941624 TTTTAACACT
6941634 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
6941654 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
6941673 TTATATATGTACATATT
1 ATAT-TATGTACATATT
6941690 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:6941841 original size:17 final size:16
Alignment explanation
Indices: 6941801--6941842 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
6941791 ATATTAATTA
6941801 TTATTATTCTAATATT
1 TTATTATTCTAATATT
*
6941817 TTGA-TATTTTATATATT
1 TT-ATTATTCTA-ATATT
6941834 TTATTATTC
1 TTATTATTC
6941843 ACATCATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (16 bp):
TTATTATTCTAATATT
Found at i:6946344 original size:48 final size:48
Alignment explanation
Indices: 6946252--6946346 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
6946242 CTTAATCTCT
* * *
6946252 AATGTGAACATAAATGCATAGAATTAAAACTTGATTAACCTAATTATG
1 AATGTCAACATAAAGGCATAGAATTAAAACTCGATTAACCTAATTATG
* * **
6946300 AATGTCAACATATAGGCATAGAATTAAAACTCGTTTAATTTAATTAT
1 AATGTCAACATAAAGGCATAGAATTAAAACTCGATTAACCTAATTAT
6946347 AAGATGTAGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.34
Consensus pattern (48 bp):
AATGTCAACATAAAGGCATAGAATTAAAACTCGATTAACCTAATTATG
Found at i:6953941 original size:12 final size:12
Alignment explanation
Indices: 6953885--6953949 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
6953875 TAAATACGTA
*
6953885 ATAATATTAGAAT
1 ATAATAATA-AAT
* *
6953898 AAAATAATATA-
1 ATAATAATAAAT
*
6953909 ATAATATTAGAAT
1 ATAATAATA-AAT
* *
6953922 AAAATAATAAGT
1 ATAATAATAAAT
6953934 ATAATAATAAAT
1 ATAATAATAAAT
6953946 ATAA
1 ATAA
6953950 GGATATATGA
Statistics
Matches: 39, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
11 7 0.18
12 18 0.46
13 14 0.36
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (12 bp):
ATAATAATAAAT
Found at i:6953945 original size:19 final size:19
Alignment explanation
Indices: 6953896--6953968 Score: 55
Period size: 19 Copynumber: 3.8 Consensus size: 19
6953886 TAATATTAGA
6953896 ATAA-AATAATATAATAA-T
1 ATAATAATAA-ATAATAAGT
* *
6953914 ATTAGAATAAAATAATAAGT
1 ATAATAAT-AAATAATAAGT
*
6953934 ATAATAATAAAT-ATAAGG
1 ATAATAATAAATAATAAGT
6953952 ATATATGAA-AAATAATA
1 ATA-AT-AATAAATAATA
6953969 CTATTTATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
18 11 0.24
19 20 0.44
20 14 0.31
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (19 bp):
ATAATAATAAATAATAAGT
Found at i:6953946 original size:24 final size:26
Alignment explanation
Indices: 6953870--6953939 Score: 101
Period size: 24 Copynumber: 2.8 Consensus size: 26
6953860 ACATATATTT
*
6953870 TAAAATAAATACGTAATAATATTAGAA
1 TAAAAT-AATAAGTAATAATATTAGAA
6953897 TAAAATAAT-A-TAATAATATTAGAA
1 TAAAATAATAAGTAATAATATTAGAA
6953921 TAAAATAATAAGT-ATAATA
1 TAAAATAATAAGTAATAATA
6953940 ATAAATATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
24 23 0.57
25 7 0.17
26 4 0.10
27 6 0.15
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.31
Consensus pattern (26 bp):
TAAAATAATAAGTAATAATATTAGAA
Found at i:6954028 original size:21 final size:21
Alignment explanation
Indices: 6953997--6954056 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 21
6953987 TGCGTATAAC
* * *
6953997 AAAATACATATATTAATATTA
1 AAAATAAATATAATAATAATA
* * **
6954018 ATAATAAATATACTAGGAATA
1 AAAATAAATATAATAATAATA
6954039 AAAATAAATATAATAATA
1 AAAATAAATATAATAATA
6954057 GTATATATAT
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (21 bp):
AAAATAAATATAATAATAATA
Found at i:6954103 original size:27 final size:28
Alignment explanation
Indices: 6954058--6954114 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
6954048 ATAATAATAG
*
6954058 TATATATATGATATGGTATT-AAAAAGA
1 TATATATATGATATAGTATTCAAAAAGA
*
6954085 TATATATATG-TAATAGTATTCAAGAAGA
1 TATATATATGAT-ATAGTATTCAAAAAGA
6954113 TA
1 TA
6954115 CGAAAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 1 0.04
27 17 0.65
28 8 0.31
ACGTcount: A:0.47, C:0.02, G:0.14, T:0.37
Consensus pattern (28 bp):
TATATATATGATATAGTATTCAAAAAGA
Found at i:6954401 original size:23 final size:23
Alignment explanation
Indices: 6954370--6954426 Score: 55
Period size: 24 Copynumber: 2.4 Consensus size: 23
6954360 TGTAACTAAT
6954370 AATACTAAAGCTATATAC-ATA-AC
1 AATA-TAAAGC-ATATACGATACAC
*
6954393 ATATATAAAAACATATACGATACAC
1 A-ATAT-AAAGCATATACGATACAC
6954418 AATATAAAG
1 AATATAAAG
6954427 TTAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
23 11 0.39
24 14 0.50
25 3 0.11
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (23 bp):
AATATAAAGCATATACGATACAC
Found at i:6954794 original size:20 final size:20
Alignment explanation
Indices: 6954749--6954795 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
6954739 TAGATATAAT
6954749 AATATAT-ACATAATATATA
1 AATATATAACATAATATATA
*
6954768 AAAATATAACATCAA-ATATA
1 AATATATAACAT-AATATATA
*
6954788 TATATATA
1 AATATATA
6954796 TGTGTAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 6 0.26
20 15 0.65
21 2 0.09
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (20 bp):
AATATATAACATAATATATA
Found at i:6954865 original size:25 final size:25
Alignment explanation
Indices: 6954789--6954866 Score: 67
Period size: 25 Copynumber: 3.1 Consensus size: 25
6954779 TCAAATATAT
6954789 ATATATATGT-GTA-ATATACAAAAA
1 ATATATA-GTAGTATATATACAAAAA
*
6954813 CATATATAGTAGTAT-TA-AGAATATAA
1 -ATATATAGTAGTATATATACAA-A-AA
6954839 ATATA-AGATAGTATATATACAAAAA
1 ATATATAG-TAGTATATATACAAAAA
6954864 ATA
1 ATA
6954867 AGTAATGAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
24 7 0.16
25 29 0.66
26 5 0.11
27 3 0.07
ACGTcount: A:0.55, C:0.04, G:0.09, T:0.32
Consensus pattern (25 bp):
ATATATAGTAGTATATATACAAAAA
Found at i:6956336 original size:22 final size:21
Alignment explanation
Indices: 6956302--6956350 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
6956292 GGCTGAAGGG
* * *
6956302 TTGTTAAATGGGTCAAACGGGT
1 TTGTAAAAGGGGT-AAACGAGT
*
6956324 TTGTAAAAGGGGTAAATGAGT
1 TTGTAAAAGGGGTAAACGAGT
6956345 TTGTAA
1 TTGTAA
6956351 GGGGTTTAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.33
Consensus pattern (21 bp):
TTGTAAAAGGGGTAAACGAGT
Found at i:6957504 original size:15 final size:16
Alignment explanation
Indices: 6957468--6957497 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6957458 ACATATCATT
6957468 TATTTCATTATATCAA
1 TATTTCATTATATCAA
6957484 TATTTCA-TATATCA
1 TATTTCATTATATCA
6957498 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:6958743 original size:68 final size:64
Alignment explanation
Indices: 6958554--6958752 Score: 168
Period size: 68 Copynumber: 3.0 Consensus size: 64
6958544 CTAGCCAGTT
* * * * * * * *
6958554 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATTCGACCTAGCTACA
1 TATCCCGTAGCTCTCTTGTCTACATGATG---TGCACATAGCACCACACATGCGACCTAGCTACA
6958619 TA
63 TA
* * * *
6958621 TATCCCGTAGCTCTCTTGTCTACATGGTGTGCACATAGTATCACCCATGCGACCTAGCTACATCA
1 TATCCCGTAGCTCTCTTGTCTACATGATGTGCACATAGCACCACACATGCGACCTAGCTACAT-A
* * *
6958686 TAATGTCTCGTAGCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTA
1 T-A--TCCCGTAGCTCTCTTGT-CTACATGATGTGCACAT-AGCACCACACATGCGACCTAGCTA
6958749 CATA
61 CATA
6958753 CCATCTGTAT
Statistics
Matches: 111, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
64 27 0.24
65 2 0.02
66 1 0.01
67 30 0.27
68 50 0.45
69 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (64 bp):
TATCCCGTAGCTCTCTTGTCTACATGATGTGCACATAGCACCACACATGCGACCTAGCTACATA
Found at i:6962867 original size:25 final size:24
Alignment explanation
Indices: 6962808--6962872 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 24
6962798 TGTTTGCATC
*
6962808 ATATTATT-TCAATATTCTATATA
1 ATATTATTATAAATATTCTATATA
*
6962831 ATATTTTGTATAAATATTCTTATATA
1 ATATTAT-TATAAATATTC-TATATA
* *
6962857 TTATTATTATATATAT
1 ATATTATTATAAATAT
6962873 GTTTCGTGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
23 6 0.18
24 1 0.03
25 16 0.47
26 11 0.32
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (24 bp):
ATATTATTATAAATATTCTATATA
Found at i:6964826 original size:39 final size:39
Alignment explanation
Indices: 6964772--6964848 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
6964762 AAAGAATTTT
6964772 ATATTGACAGAATATAAATTCAGTAAATTAGAAGACATA
1 ATATTGACAGAATATAAATTCAGTAAATTAGAAGACATA
6964811 ATATTGACAGAATATAAATTCAGTAAATTAGAAGACAT
1 ATATTGACAGAATATAAATTCAGTAAATTAGAAGACAT
6964849 CATTAATAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.29
Consensus pattern (39 bp):
ATATTGACAGAATATAAATTCAGTAAATTAGAAGACATA
Found at i:6967326 original size:51 final size:49
Alignment explanation
Indices: 6967214--6967337 Score: 121
Period size: 51 Copynumber: 2.5 Consensus size: 49
6967204 TATTTAGCAT
*
6967214 TTATCTCTT-ATTAATTTAATTAACTAGAGATAAGATAATTATTTAATA
1 TTATCTCTTAATTAATTTAATTAACTAGAGATAAGATAAATATTTAATA
* * *
6967262 TTATCAT-TTAATTAATTTAATTTTAA-TCAGTGATAATATAAAT-TTTATTA
1 TTATC-TCTTAATTAATTTAA--TTAACT-AGAGATAAGATAAATATTTAATA
*
6967312 TATATCTCTTAATTATTTTAAATTAA
1 T-TATCTCTTAATTAATTT-AATTAA
6967338 GTAAAAAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
48 7 0.11
49 11 0.17
50 13 0.21
51 30 0.48
52 2 0.03
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.50
Consensus pattern (49 bp):
TTATCTCTTAATTAATTTAATTAACTAGAGATAAGATAAATATTTAATA
Found at i:6970209 original size:12 final size:12
Alignment explanation
Indices: 6970192--6970216 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6970182 GGATAGAAGG
6970192 GTCCTAAGTAAA
1 GTCCTAAGTAAA
6970204 GTCCTAAGTAAA
1 GTCCTAAGTAAA
6970216 G
1 G
6970217 CTCCAGCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (12 bp):
GTCCTAAGTAAA
Found at i:6987972 original size:72 final size:72
Alignment explanation
Indices: 6987765--6988431 Score: 937
Period size: 72 Copynumber: 9.2 Consensus size: 72
6987755 TGAGCCTTTT
* * ** * **
6987765 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACACTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
6987829 GTAATTTT
65 GTAATTTC
* * * *
6987837 AATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTG
1 AATTTCTGTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
6987902 AGGTAATTTC
63 AGGTAATTTC
* * *
6987912 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6987977 TATTTTC
66 TAATTTC
6987984 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6988049 GTAATTTC
65 GTAATTTC
6988057 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
6988122 TAATTTC
66 TAATTTC
6988129 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6988194 TATTTTC
66 TAATTTC
* *
6988201 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAGACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
6988266 GTAATTTC
65 GTAATTTC
*
6988274 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
6988339 TATTTTC
66 TAATTTC
* ** * * *
6988346 AAATTCTACT-TTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGC
1 -AATT-T-CTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGT
**
6988408 TGAGGTCTTTTC
61 TGAGGTAATTTC
*
6988420 AAATTCTGTTTT
1 AATTTCTGTTTT
6988432 TAATTTCTGT
Statistics
Matches: 551, Mismatches: 32, Indels: 24
0.91 0.05 0.04
Matches are distributed among these distances:
71 4 0.01
72 312 0.57
73 147 0.27
74 27 0.05
75 61 0.11
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTC
Found at i:6988063 original size:145 final size:144
Alignment explanation
Indices: 6987765--6988431 Score: 948
Period size: 145 Copynumber: 4.6 Consensus size: 144
6987755 TGAGCCTTTT
* * ** *
6987765 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACACTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
* * *
6987829 GTAATTTT-AATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
65 GT-ATTTTCAATTTCTGTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
*
6987893 GACACGCTGAGGTAATTTC
126 GACACGTTGAGGTAATTTC
*
6987912 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
6987977 TATTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
66 TATTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
6988042 CGTTGAGGTAATTTC
130 CGTTGAGGTAATTTC
* *
6988057 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
6988122 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
66 TATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
6988187 GTTGAGGTATTTTC
131 GTTGAGGTAATTTC
* * * *
6988201 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAGACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
*
6988266 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
65 GTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* *
6988331 CATTGAGGTATTTTC
130 CGTTGAGGTAATTTC
* ** *
6988346 AAATTCTACT-TTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGC
1 -AATT-T-CTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG--ACACGC
* *
6988408 TGAGGTCTTTTCAAATTCTGTTTT
61 TGAGGTATTTTCAATTTCTGTTTT
6988432 TAATTTCTGT
Statistics
Matches: 482, Mismatches: 29, Indels: 19
0.91 0.05 0.04
Matches are distributed among these distances:
144 102 0.21
145 268 0.56
146 47 0.10
147 61 0.13
148 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (144 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
TATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTAATTTC
Found at i:6988161 original size:217 final size:217
Alignment explanation
Indices: 6987761--6988432 Score: 994
Period size: 217 Copynumber: 3.1 Consensus size: 217
6987751 AAGTTGAGCC
* * * ** * *
6987761 TTTT-AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACA
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* * * *
6987824 CTGAGGTAATTTTAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
66 TTGAGGTAATTTCAATTTCTGTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
* * *
6987889 TCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAG
128 TCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAG
6987954 TTGAGCCTCAGGACACGCTGAGGTA
193 TTGAGCCTCAGGACACGCTGAGGTA
6987979 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
6988044 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
6988109 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
131 AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
* *
6988174 AGCCTCAAGACACGTTGAGGTA
196 AGCCTCAGGACACGCTGAGGTA
* *
6988196 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAGACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
6988261 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * * **
6988326 AGACACATTGAGGTATTTTCAAATTCTACT-TTTTC-AAA-TCAACTCATATTGCAAGAGGTGAG
131 AGACACGTTGAGGTAATTTC-AATT-T-CTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAG
* *
6988388 TTGAGTCTCAGGCCACACGCTGAGGTC
193 TTGAGCCTCAGG--ACACGCTGAGGTA
* *
6988415 TTTTCAAATTCTGTTTTT
1 TTTTCAATTTCTGCTTTT
6988433 AATTTCTGTT
Statistics
Matches: 417, Mismatches: 30, Indels: 13
0.91 0.07 0.03
Matches are distributed among these distances:
217 297 0.71
218 11 0.03
219 50 0.12
220 59 0.14
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (217 bp):
TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
AGCCTCAGGACACGCTGAGGTA
Found at i:6988439 original size:13 final size:13
Alignment explanation
Indices: 6988423--6988454 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
6988413 TCTTTTCAAA
6988423 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
6988436 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
6988449 TTCTGT
1 TTCTGT
6988455 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.69
Consensus pattern (13 bp):
TTCTGTTTTTAAT
Found at i:6988613 original size:54 final size:54
Alignment explanation
Indices: 6988469--6988715 Score: 357
Period size: 53 Copynumber: 4.7 Consensus size: 54
6988459 CAAAAAAAAC
* * *
6988469 AAAATCAACTCATATTGCAAGAGGTGCGTTGAGCCTTTTAATTTCTGTTTTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCA
6988523 AAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCA
*
6988576 AAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT--TTTCTA-TTTTC-
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCA
* *
6988624 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAAATTCT-GTTTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT--AATTTCTATTTTTCA
*
6988679 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
6988716 GGCTCACGTG
Statistics
Matches: 177, Mismatches: 7, Indels: 17
0.88 0.03 0.08
Matches are distributed among these distances:
48 34 0.19
49 5 0.03
50 8 0.05
52 2 0.01
53 49 0.28
54 43 0.24
55 36 0.20
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (54 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTTCA
Found at i:6988977 original size:16 final size:17
Alignment explanation
Indices: 6988956--6988990 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
6988946 TTTAATTTTC
6988956 AAAATTTCAAAAA-AAA
1 AAAATTTCAAAAATAAA
*
6988972 AAAATTTTAAAAATAAA
1 AAAATTTCAAAAATAAA
6988989 AA
1 AA
6988991 TTGCATTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAATTTCAAAAATAAA
Found at i:6989028 original size:30 final size:29
Alignment explanation
Indices: 6988988--6989088 Score: 114
Period size: 30 Copynumber: 3.4 Consensus size: 29
6988978 TTAAAAATAA
* *
6988988 AAATTGCATTTTGACACCTAAACTTTTC-CT
1 AAATTTCATTTTGAC-CCTAAAC-TTTCATT
*
6989018 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCC-TAAACTTTCATT
* *
6989048 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGA-CCCTAAACTTTCATT
6989078 AAATTTCATTT
1 AAATTTCATTT
6989089 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
29 6 0.10
30 53 0.85
31 3 0.05
ACGTcount: A:0.31, C:0.22, G:0.04, T:0.44
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCATT
Found at i:6989685 original size:24 final size:21
Alignment explanation
Indices: 6989657--6989719 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 21
6989647 CTGATCGGGG
6989657 AGAAAGAAAGGAAGAAAAGAAGA
1 AGAAAGAAA-GAA-AAAAGAAGA
**
6989680 AGGAAAG-AAGAAAAGGGAAGA
1 A-GAAAGAAAGAAAAAAGAAGA
6989701 AGAAAGAAAGAAAAAAGAA
1 AGAAAGAAAGAAAAAAGAA
6989720 AAAAACTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 5 0.15
21 18 0.53
22 3 0.09
23 3 0.09
24 5 0.15
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (21 bp):
AGAAAGAAAGAAAAAAGAAGA
Found at i:6989694 original size:28 final size:28
Alignment explanation
Indices: 6989659--6989721 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
6989649 GATCGGGGAG
*
6989659 AAAG-AAA-GGAAGAAAAGAAGAAGGAAA
1 AAAGAAAAGGGAAGAAAA-AAGAAAGAAA
* *
6989686 GAAGAAAAGGGAAGAAGAAAGAAAGAAA
1 AAAGAAAAGGGAAGAAAAAAGAAAGAAA
6989714 AAAGAAAA
1 AAAGAAAA
6989722 AAACTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 3 0.10
28 19 0.63
29 8 0.27
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (28 bp):
AAAGAAAAGGGAAGAAAAAAGAAAGAAA
Found at i:6990458 original size:18 final size:18
Alignment explanation
Indices: 6990406--6990517 Score: 110
Period size: 17 Copynumber: 6.4 Consensus size: 18
6990396 AAAAAATTTC
6990406 AAATTTTCGTGTTTTTCTAA
1 AAATTTTCGTG-TTTTC-AA
*
6990426 AAA-TTTC-TATGTTTCAA
1 AAATTTTCGTGT-TTTCAA
6990443 AAATTTTCGTGTTTTC-A
1 AAATTTTCGTGTTTTCAA
6990460 AAATTTTCGTGTTTTCAA
1 AAATTTTCGTGTTTTCAA
* * *
6990478 CAATTCTCGTG-TTTCAC
1 AAATTTTCGTGTTTTCAA
*
6990495 AAATTCTCGTGTTTT--A
1 AAATTTTCGTGTTTTCAA
6990511 AAATTTT
1 AAATTTT
6990518 TTATATTTTA
Statistics
Matches: 79, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
16 6 0.08
17 38 0.48
18 26 0.33
19 6 0.08
20 3 0.04
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (18 bp):
AAATTTTCGTGTTTTCAA
Found at i:6990505 original size:52 final size:54
Alignment explanation
Indices: 6990402--6990517 Score: 152
Period size: 52 Copynumber: 2.2 Consensus size: 54
6990392 TAAAAAAAAA
*
6990402 TTTC-AAATTTTCGTGTTTTTCTAAAAATTTCTATGTTTCAAAAATTTTCGTGT
1 TTTCAAAATTTTCGTGTTTTTCTAAAAATTTCTATGTTTCAAAAATTCTCGTGT
* * *
6990455 TTTCAAAATTTTCGTG-TTTTC-AACAA-TTCTCGTGTTTCACAAATTCTCGTGT
1 TTTCAAAATTTTCGTGTTTTTCTAAAAATTTCT-ATGTTTCAAAAATTCTCGTGT
6990507 TTT-AAAATTTT
1 TTTCAAAATTTT
6990518 TTATATTTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
51 12 0.21
52 25 0.44
53 9 0.16
54 11 0.19
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (54 bp):
TTTCAAAATTTTCGTGTTTTTCTAAAAATTTCTATGTTTCAAAAATTCTCGTGT
Found at i:6990548 original size:22 final size:21
Alignment explanation
Indices: 6990523--6990570 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 21
6990513 ATTTTTTATA
6990523 TTTTAAAAAAAAATTGTCGTGTT
1 TTTTAAAAAAAAATT-T-GTGTT
6990546 TTTTAAAAAAAAAATTTGTGTT
1 TTTT-AAAAAAAAATTTGTGTT
6990568 TTT
1 TTT
6990571 AAATTTTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 8 0.33
23 5 0.21
24 11 0.46
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (21 bp):
TTTTAAAAAAAAATTTGTGTT
Found at i:6990596 original size:17 final size:17
Alignment explanation
Indices: 6990563--6990645 Score: 82
Period size: 17 Copynumber: 4.9 Consensus size: 17
6990553 AAAAAAATTT
*
6990563 GTGTTTTTAAA-TTTTC
1 GTGTTTTCAAATTTTTC
*
6990579 GTATTTTCAAATTTTTC
1 GTGTTTTCAAATTTTTC
* *
6990596 GTGTTTTCAATAATTCTC
1 GTGTTTTCAA-ATTTTTC
6990614 GTG-TTTCACAATTTTT-
1 GTGTTTTCA-AATTTTTC
*
6990630 GTGTTTTAAAATTTTT
1 GTGTTTTCAAATTTTT
6990646 TTATATTTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
16 19 0.35
17 27 0.49
18 9 0.16
ACGTcount: A:0.22, C:0.10, G:0.11, T:0.58
Consensus pattern (17 bp):
GTGTTTTCAAATTTTTC
Found at i:6990599 original size:128 final size:130
Alignment explanation
Indices: 6990443--6990677 Score: 386
Period size: 128 Copynumber: 1.8 Consensus size: 130
6990433 TATGTTTCAA
*
6990443 AAATTTTCGTGTTTTCAAAATTTTCGTGTTTTCAACAATTCTCGTGTTTCACAAATTCTCGTGTT
1 AAATTTTCGTATTTTCAAAATTTTCGTGTTTTCAACAATTCTCGTGTTTCAC-AATTCTCGTGTT
6990508 TTAAAA-TTTTTTATATTTT-AAAAAAAA-ATTGTCGTGTTTTTTAAAAAAAAAATTTGTGTTTT
65 TTAAAATTTTTTTATATTTTAAAAAAAAAGATTGTCGTGTTTTTTAAAAAAAAAATTTGTGTTTT
6990570 T
130 T
* * * *
6990571 AAATTTTCGTATTTTCAAATTTTTCGTGTTTTCAATAATTCTCGTGTTTCACAATTTTTGTGTTT
1 AAATTTTCGTATTTTCAAAATTTTCGTGTTTTCAACAATTCTCGTGTTTCACAATTCTCGTGTTT
6990636 TAAAATTTTTTTATATTTTAAAAAAAAAAGATTGTCGTGTTT
66 TAAAATTTTTTTATATTTT-AAAAAAAAAGATTGTCGTGTTT
6990678 CAAAATTTTC
Statistics
Matches: 98, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
127 16 0.16
128 62 0.63
130 8 0.08
131 12 0.12
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.51
Consensus pattern (130 bp):
AAATTTTCGTATTTTCAAAATTTTCGTGTTTTCAACAATTCTCGTGTTTCACAATTCTCGTGTTT
TAAAATTTTTTTATATTTTAAAAAAAAAGATTGTCGTGTTTTTTAAAAAAAAAATTTGTGTTTTT
Found at i:6990767 original size:37 final size:37
Alignment explanation
Indices: 6990726--6990796 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
6990716 ATCTTCATGT
*
6990726 TTTCAAAA-TCCTCGTGTTTTTAAAAAAATTTCCGGTG
1 TTTCAAAATTCCT-GTGTTTTAAAAAAAATTTCCGGTG
6990763 TTTCAAAATTCCTGTGTTTTAAAAAAAATTTCCG
1 TTTCAAAATTCCTGTGTTTTAAAAAAAATTTCCG
6990797 TGATTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
37 28 0.88
38 4 0.12
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.41
Consensus pattern (37 bp):
TTTCAAAATTCCTGTGTTTTAAAAAAAATTTCCGGTG
Found at i:6994832 original size:19 final size:18
Alignment explanation
Indices: 6994796--6994844 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
6994786 ATCATTTCTT
*
6994796 AATTCATTTTTTTCTTTA
1 AATTTATTTTTTTCTTTA
** *
6994814 TTTTTATTTTTCTTTTTTA
1 AATTTATTTTT-TTCTTTA
6994833 AATTTATTTTTT
1 AATTTATTTTTT
6994845 ATCTAATTTA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (18 bp):
AATTTATTTTTTTCTTTA
Found at i:6997520 original size:11 final size:13
Alignment explanation
Indices: 6997495--6997521 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6997485 TAGTTGGATC
6997495 TAAATATATTATA
1 TAAATATATTATA
6997508 TAAATATATTATA
1 TAAATATATTATA
6997521 T
1 T
6997522 GTCACATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAATATATTATA
Found at i:7007738 original size:45 final size:45
Alignment explanation
Indices: 7007687--7007894 Score: 127
Period size: 45 Copynumber: 4.7 Consensus size: 45
7007677 GAATTCACAG
*
7007687 ATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGACGGCGA
1 ATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGACGACGA
** * * ** * *
7007732 ATCTTATCTCTTTGAAGTAGCAAGGGAGTAGATTTAAGTC-ACTA
1 ATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGACGACGA
** * * * * * * **
7007776 GCCTTGTCTCCCTGA-GTAGTAGTAGAGTAG-GCTGAAGATTAC-A
1 ATCTTATCTCCATGAGGTAGCAATGGAGTAGATC-GAAGACGACGA
* * * * **
7007819 GATCTTATCTCCATGAGGTAGCAATGAAGCAGATCGATGAAGGGGA
1 -ATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGACGACGA
* *
7007865 ATCTTATCTCCCTGAGGTAGCAAGGGAGTA
1 ATCTTATCTCCATGAGGTAGCAATGGAGTA
7007895 AATTTAAGCT
Statistics
Matches: 115, Mismatches: 42, Indels: 12
0.68 0.25 0.07
Matches are distributed among these distances:
43 15 0.13
44 25 0.22
45 73 0.63
46 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (45 bp):
ATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGACGACGA
Found at i:7007921 original size:133 final size:132
Alignment explanation
Indices: 7007683--7008094 Score: 481
Period size: 133 Copynumber: 3.1 Consensus size: 132
7007673 CGATGAATTC
* * * * ** *
7007683 ACAGATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGACGGCGAATCTTATCTCTTTGAA
1 ACAGATCTTATCTCCATGAGGTAGCAATGAAGCAGATCG-AGAAGGGGAATCTTATCTCCCTGAG
* * * *
7007748 GTAGCAAGGGAGTAGATTTAAG-TCACTAGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGCTGAA
65 GTAGCAAGGGAGTAAATTTAAGCT-ACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAA
7007812 GATT
129 GATT
7007816 ACAGATCTTATCTCCATGAGGTAGCAATGAAGCAGATCGATGAAGGGGAATCTTATCTCCCTGAG
1 ACAGATCTTATCTCCATGAGGTAGCAATGAAGCAGATCGA-GAAGGGGAATCTTATCTCCCTGAG
7007881 GTAGCAAGGGAGTAAATTTAAGCTACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAG
65 GTAGCAAGGGAGTAAATTTAAGCTACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAG
7007946 ATT
130 ATT
** * * * ** * *
7007949 TTAGATCTTATCTCCCT-AAGCAATAGTGGAA-CAGATCGA-AAGCGGCGAATCTTATCTCCCTA
1 ACAGATCTTATCTCCATGAGGTAGCAAT-GAAGCAGATCGAGAAG-GG-GAATCTTATCTCCCTG
* * * * * *
7008011 AGGTAGCAAGGGAGCAAATTTAAGCCACTAGCTTTGTCTCTCTGAGCAGCAGTGGAGCAGGCTAA
63 AGGTAGCAAGGGAGTAAATTTAAGCTACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGCTGA
7008076 AGATT
128 AGATT
** *
7008081 GTAGATCTTGTCTC
1 ACAGATCTTATCTC
7008095 TCTAAGATGT
Statistics
Matches: 246, Mismatches: 28, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
130 3 0.01
131 2 0.01
132 105 0.43
133 135 0.55
134 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
ACAGATCTTATCTCCATGAGGTAGCAATGAAGCAGATCGAGAAGGGGAATCTTATCTCCCTGAGG
TAGCAAGGGAGTAAATTTAAGCTACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGA
TT
Found at i:7008041 original size:132 final size:132
Alignment explanation
Indices: 7007716--7008277 Score: 559
Period size: 132 Copynumber: 4.3 Consensus size: 132
7007706 GCAATGGAGT
** * * *
7007716 AGATCG-AAGACGGCGAATCTTATCTCTTTGAAGTAGCAAGGGAGTAGATTTAAGTCACTAGCCT
1 AGATCGAAAGACGGCGAATCTTATCTCCCT-AAGTAGCAAGGGAGCAAATTTAAGCCACTAGCCT
* * * * * * * * *
7007780 TGTCTCCCTGAGTAGTAGTAGAGTAGGCTGAAGATTACAGATCTTATCTCCATGAGGTAGCAATG
65 TGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTATAGATCTTATCTCCCT-AAGCAGTAGTG
7007845 AAGC
129 AAGC
* * * * * *
7007849 AGATCG-ATGAAGGGGAATCTTATCTCCCTGAGGTAGCAAGGGAGTAAATTTAAGCTACTAGCCT
1 AGATCGAAAGACGGCGAATCTTATCTCCCT-AAGTAGCAAGGGAGCAAATTTAAGCCACTAGCCT
* *
7007913 TGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTTTAGATCTTATCTCCCTAAGCAATAGTGG
65 TGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGT-G
7007978 AA-C
129 AAGC
*
7007981 AGATCGAAAG-CGGCGAATCTTATCTCCCTAAGGTAGCAAGGGAGCAAATTTAAGCCACTAGCTT
1 AGATCGAAAGACGGCGAATCTTATCTCCCTAA-GTAGCAAGGGAGCAAATTTAAGCCACTAGCCT
* * * * * *
7008045 TGTCTCTCTGAGCAGCAGTGGAGCAGGCTAAAGATTGTAGATCTTGTCTCTCTAAG-ATGTAGTG
65 TGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTATAGATCTTATCTCCCTAAGCA-GTAGTG
7008109 AAGC
129 AAGC
* * * * * * * *
7008113 AGATCG-AAGATGGC-AGATCTTGTCTTCCTAAGCAGTAATGGAGCAGATTTAAGCCA-TCATCC
1 AGATCGAAAGACGGCGA-ATCTTATCTCCCTAAGTAGCAAGGGAGCAAATTTAAGCCACT-AGCC
* * * * *
7008175 -TATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTATAGATCTTGTCTCCCTAAGCAGTAGTG
64 TTGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTG
*
7008239 GAGC
129 AAGC
* * * *
7008243 AGATCG-AAGATGGCAAATCTTGTCTCTCTAAGTAG
1 AGATCGAAAGACGGCGAATCTTATCTCCCTAAGTAG
7008278 TAGTGGACCA
Statistics
Matches: 363, Mismatches: 56, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
130 87 0.24
131 34 0.09
132 135 0.37
133 107 0.29
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (132 bp):
AGATCGAAAGACGGCGAATCTTATCTCCCTAAGTAGCAAGGGAGCAAATTTAAGCCACTAGCCTT
GTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGAA
GC
Found at i:7008123 original size:44 final size:44
Alignment explanation
Indices: 7008044--7008468 Score: 317
Period size: 44 Copynumber: 9.8 Consensus size: 44
7008034 GCCACTAGCT
* * * * *
7008044 TTGTCTCTCTGAGCAGCAGTGGAGCAG-GCTAAAGATTGTAGATC
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGATC-GAAGATGGTAGATC
* *
7008088 TTGTCTCTCTAAG-ATGTAGTGAAGCAGATCGAAGATGGCAGATC
1 TTGTCTCTCTAAGCA-GTAGTGGAGCAGATCGAAGATGGTAGATC
* ** *** *
7008132 TTGTCT-TCCTAAGCAGTAATGGAGCAGATTTAAG-CCAT-CATC
1 TTGTCTCT-CTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGATC
* * * * * * **
7008174 CTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTATAGATC
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGATC
* * *
7008218 TTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATC
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGATC
* * * * *
7008262 TTGTCTCTCTAAGTAGTAGTGGACCAGATCGAAGATGGCAAATA
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGATC
* *
7008306 TTGTCTCTCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATC
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGATC
* * * ** * * *
7008350 TTGTGTCCCTAAGCAGTAGTGGGGCAGATTTAAGCT-AT-CATC
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGATC
* * * * *
7008392 CTATCTCTCTAAGCAGTAGTGAAGCAG-GCTGAAGATTGTAGATC
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGATC-GAAGATGGTAGATC
** * *
7008436 TTACCTCCCTAAGAAGTAGTGGAGCAGATCGAA
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAA
7008469 AGCGGCGAAT
Statistics
Matches: 299, Mismatches: 71, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
42 57 0.19
43 5 0.02
44 234 0.78
45 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (44 bp):
TTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGATC
Found at i:7008241 original size:174 final size:172
Alignment explanation
Indices: 7008044--7008468 Score: 455
Period size: 174 Copynumber: 2.4 Consensus size: 172
7008034 GCCACTAGCT
* * *
7008044 TTGTCTCTCTGAGCAGCAGTGGAGCAGGCTAAAGATTGTAGATCTTGTCTCTCTAAGATGTAGTG
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGGCTGAAGATTGTAGATCTTGTCTCTCTAAGATGTAGTG
* * * **
7008109 AAGCAGATCGAAGATGGCAGATCTTGTCT-TCCTAAGCAGTAATGGAGCAGATTTAAGCCAT-C-
66 GAGCAGATCGAAGATGGCAAATATTGTCTCT-CTAAGCAGTAATGGAGCAGATCAAAG--ATGCA
* * * *
7008171 ATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTATAGATC
128 ATCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAG-CTAT-CATC
* * * * *
7008218 TTGTCTCCCTAAGCAGTAGTGGAGCA-GATCGAAGATGGCAAATCTTGTCTCTCTAAG-TAGTAG
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGGCT-GAAGATTGTAGATCTTGTCTCTCTAAGAT-GTAG
* *
7008281 TGGACCAGATCGAAGATGGCAAATATTGTCTCTCTAAGCAGTAGTGGAGCAGATCAAAGATGGCA
64 TGGAGCAGATCGAAGATGGCAAATATTGTCTCTCTAAGCAGTAATGGAGCAGATCAAAGAT-GCA
* * * * *
7008346 GATCTTGTGTCCCTAAGCAGTAGTGGGGCAGATTTAAGCTATCATC
128 -ATCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGCTATCATC
* * * ** * *
7008392 CTATCTCTCTAAGCAGTAGTGAAGCAGGCTGAAGATTGTAGATCTTACCTCCCTAAGAAGTAGTG
1 TTGTCTCTCTAAGCAGTAGTGGAGCAGGCTGAAGATTGTAGATCTTGTCTCTCTAAGATGTAGTG
7008457 GAGCAGATCGAA
66 GAGCAGATCGAA
7008469 AGCGGCGAAT
Statistics
Matches: 205, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
172 2 0.01
173 3 0.01
174 164 0.80
175 6 0.03
176 30 0.15
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (172 bp):
TTGTCTCTCTAAGCAGTAGTGGAGCAGGCTGAAGATTGTAGATCTTGTCTCTCTAAGATGTAGTG
GAGCAGATCGAAGATGGCAAATATTGTCTCTCTAAGCAGTAATGGAGCAGATCAAAGATGCAATC
CTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGCTATCATC
Found at i:7008582 original size:25 final size:25
Alignment explanation
Indices: 7008536--7008583 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7008526 ATTTTCCTGA
*
7008536 AGTAGCAAGGGAGCAGATTGAAGCC
1 AGTAGCAAGGGAGCAGACTGAAGCC
*
7008561 AGTAGC-AGTGGAGCAGGCTGAAG
1 AGTAGCAAG-GGAGCAGACTGAAG
7008584 ATTGTAGATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.33, C:0.15, G:0.40, T:0.12
Consensus pattern (25 bp):
AGTAGCAAGGGAGCAGACTGAAGCC
Found at i:7009030 original size:44 final size:44
Alignment explanation
Indices: 7008958--7009060 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
7008948 CTACAAGTAT
* * * *
7008958 TATCTCTCTGAAGATATAGTGGAACAGATTGAAGATACCAATCG
1 TATCTCTCTGAAGTTACAGCGGAACAGATTGAAGATACCAATCC
* * * *
7009002 TATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGCTACTAATCC
1 TATCTCTCTGAAGTTACAGCGGAACAGATTGAAGATACCAATCC
*
7009046 TATCTCTATGAAGTT
1 TATCTCTCTGAAGTT
7009061 GCAATGAATA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (44 bp):
TATCTCTCTGAAGTTACAGCGGAACAGATTGAAGATACCAATCC
Found at i:7014498 original size:66 final size:66
Alignment explanation
Indices: 7014392--7014524 Score: 203
Period size: 66 Copynumber: 2.0 Consensus size: 66
7014382 TGACATTTCT
* ** * *
7014392 ACATTCATAACACATCTAGTTAGGAGCATTTGATTCATTTCGGTCATAGTATCCTAATTATTTGA
1 ACATTCACAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGA
7014457 C
66 C
* *
7014458 ACATTCACAACATATCTAGTTAGGAGCATTTGATTCATTTCAATCATTGCATCCTAATCATTTGA
1 ACATTCACAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGA
7014523 C
66 C
7014524 A
1 A
7014525 TAAGCATAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (66 bp):
ACATTCACAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGA
C
Found at i:7014848 original size:68 final size:68
Alignment explanation
Indices: 7014731--7016750 Score: 2851
Period size: 68 Copynumber: 30.0 Consensus size: 68
7014721 CTGAATTACA
*
7014731 AATCTCTT-TTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTC
1 AATCTCTTCTT-CCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTC
7014795 AGTG
65 AGTG
* * *
7014799 GATCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCTACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7014864 GTG
66 GTG
* * *
7014867 GATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
**
7014932 GCA
66 GTG
*
7014935 AAT-TC-TC-T-CTGAAATGGCGTTGGAGTGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7014996 GTG
66 GTG
* * *
7014999 GACCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7015064 GTG
66 GTG
* * * * * *
7015067 GATCTCTTTTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTAAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
**
7015132 GCA
66 GTG
* *
7015135 AAT-T-TTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTTA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
*
7015198 ATG
66 GTG
* * * * *
7015201 GATTTCTTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
*
7015266 GTA
66 GTG
* * *
7015269 AAT-T-TTCTCCCTGAAATGGCGTTGAAGCGGCTAAAAGCCACAGCAGATCTCCTTTAAAGTTTC
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCC-TTGAAGTTTC
7015332 AGTG
65 AGTG
* * *
7015336 GATCTCTTTTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7015401 GTG
66 GTG
* * *
7015404 GATCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7015469 GT-
66 GTG
** * *
7015471 AAAAT-TTCTCCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7015535 GTG
66 GTG
* * *
7015538 GATCTCTTTTTCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
**
7015603 GCA
66 GTG
* *
7015606 AAT-T-TTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACATCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7015669 GTG
66 GTG
* * * * *
7015672 AATCTTTTCTTCCTGAAATGGCGTTGGAGTGGCTAAAAGTCGCAGCAGATCTTCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
*
7015737 ATG
66 GTG
* *
7015740 AATCTCTTCTTCCTGAAATGACATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7015805 GTG
66 GTG
*
7015808 AATCTCTTCTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
*
7015873 ATG
66 GTG
* * * **
7015876 GATCTCTTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAATAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
*
7015941 GTA
66 GTG
* * * * *
7015944 AAT-T-TTCTCCCTGAAATGGCATTGGAACGGCTAAAAGCCATAGCAGATCTCTTTTGAAGTTTC
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTC-CTTGAAGTTTC
7016007 AGTG
65 AGTG
* * * * *
7016011 GATCTCTTTTTCCTAAAATGGCGTTGGAGCGGCTAAAAGCCACAACAAATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
*
7016076 GTA
66 GTG
* **
7016079 AAT-T-TTCTCCCTGAAATGGCGTTGGAGTAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7016142 GTG
66 GTG
* *
7016145 GATCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
*
7016210 G-C
66 GTG
** * * *
7016212 AAAAT-TTCTCCCTAAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7016276 GTG
66 GTG
* * *
7016279 AATCTTTTCTTCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAGCAGATCTCCTTAAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
**
7016344 GCA
66 GTG
* * * *
7016347 AAT-T-TTCTCCCTAAAATGGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7016410 GTG
66 GTG
* * *
7016413 AATCTTTTCTTCCTAAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTTA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7016478 GTG
66 GTG
*
7016481 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAAATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7016546 GTG
66 GTG
7016549 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7016614 GTG
66 GTG
* * *
7016617 AATCTTTTCTTCTTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTAAAGTTTCA
1 AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
7016682 GT-
66 GTG
* * * * ** *
7016684 AGATCTCTTCTCCCTAAAATGGCGTTGGAACGACTAAAAGTTACAGCAGATTTCCTTGAAGTTTC
1 A-ATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTC
7016749 AG
65 AG
7016751 CGAAAGAAGA
Statistics
Matches: 1743, Mismatches: 185, Indels: 48
0.88 0.09 0.02
Matches are distributed among these distances:
64 53 0.03
65 2 0.00
66 430 0.25
67 52 0.03
68 1121 0.64
69 85 0.05
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (68 bp):
AATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
GTG
Found at i:7015191 original size:134 final size:134
Alignment explanation
Indices: 7014740--7016750 Score: 2757
Period size: 134 Copynumber: 14.9 Consensus size: 134
7014730 AAATCTCTTT
*
7014740 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTGGATCTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* **
7014805 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAAT
7014870 CTCTTC
131 -T-TTC
* ***
7014876 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGCAAAT-TC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * *
7014940 --TCT-CTGAAATGGCGTTGGAGTGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAC
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGT--AA
*
7015002 CTCTTT-
129 AT-TTTC
*
7015008 TTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * * * *
7015073 TTTTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTAAAGTTTCAGCAAAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAAT
7015138 TTTC
131 TTTC
* * *
7015142 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTTAATGGATTTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * * *
7015207 TTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTAAAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAAT
7015272 TTTC
131 TTTC
* *
7015276 TCCCTGAAATGGCGTTGAAGCGGCTAAAAGCCACAGCAGATCTCCTTTAAAGTTTCAGTGGATCT
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCC-TTGAAGTTTCAGTGGATCT
* **
7015341 CTTTTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGA
65 CTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAA
*
7015406 TCTCTTT
130 T-T-TTC
* * * **
7015413 TTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGT-AAAAT-
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * * **
7015476 TTCTCCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAAT
*
7015541 CTCTTT
131 -T-TTC
* * ***
7015547 TTCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAAT-T-
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * *
7015610 TTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACATCAGATCTCCTTGAAGTTTCAGTGAAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGT-AA-
*
7015675 CTTTTC
129 ATTTTC
* * * * * * *
7015681 TTCCTGAAATGGCGTTGGAGTGGCTAAAAGTCGCAGCAGATCTTCTTGAAGTTTCAATGAATCTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * * *
7015746 TTCTTCCTGAAATGACATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGAAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAAT
7015811 CTCTTC
131 -T-TTC
* * *
7015817 TTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAATGGATCTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * * **
7015882 TTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAATAGATCTCCTTGAAGTTTCAGTAAAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAAT
7015947 TTTC
131 TTTC
* * * *
7015951 TCCCTGAAATGGCATTGGAACGGCTAAAAGCCATAGCAGATCTCTTTTGAAGTTTCAGTGGATCT
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTC-CTTGAAGTTTCAGTGGATCT
* * *
7016016 CTTTTTCCTAAAATGGCGTTGGAGCGGCTAAAAGCCACAACAAATCTCCTTGAAGTTTCAGTAAA
65 CTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAA
7016081 TTTTC
130 TTTTC
**
7016086 TCCCTGAAATGGCGTTGGAGTAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* *
7016151 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAAA
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAAT
7016216 TTTC
131 TTTC
* * *
7016220 TCCCTAAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGAATCT-
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * *
7016284 TTTCTTCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAGCAGATCTCCTTAAAGTTTCAGCAAA
66 TTT-TTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAA
7016349 TTTTC
130 TTTTC
* * * *
7016354 TCCCTAAAATGGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTGAAGTTTCAGTGAATCT-
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * *
7016418 TTTCTTCCTAAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTTAGTGAA
66 TTT-TTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAA
7016483 TCTCTTC
130 T-T-TTC
* * *
7016490 TTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAAATCTCCTTGAAGTTTCAGTGAATCTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
*
7016555 TTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGAAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGT-AA-
*
7016620 CTTTTC
129 ATTTTC
* * * *
7016626 TTCTTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTAAAGTTTCAGTAGATCTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* * * * * ** *
7016691 TTCTCCCTAAAATGGCGTTGGAACGACTAAAAGTTACAGCAGATTTCCTTGAAGTTTCAG
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
7016751 CGAAAGAAGA
Statistics
Matches: 1693, Mismatches: 158, Indels: 48
0.89 0.08 0.03
Matches are distributed among these distances:
132 110 0.06
133 12 0.01
134 780 0.46
135 209 0.12
136 533 0.31
137 48 0.03
138 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (134 bp):
TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTAAAT
TTTC
Found at i:7016160 original size:741 final size:742
Alignment explanation
Indices: 7014740--7016750 Score: 3146
Period size: 741 Copynumber: 2.7 Consensus size: 742
7014730 AAATCTCTTT
*
7014740 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTGGATCTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* ***
7014805 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAAT
*
7014870 CTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAG-C
131 -T-TTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTG
* *
7014934 AA-ATTCTC-T-CTGAAATGGCGTTGGAGTGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
194 AATCTTTTCTTCCTGAAATGGCGTTGGAGTGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCA
* * *
7014996 GTGGACCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTT
259 GTGAATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTT
* * * * *
7015061 TCAGTGGATCTCTTTTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTAAA
324 TCAGTGAATCTCTTCTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAA
*
7015126 GTTTC-A-GCAA-ATTTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCT
389 GTTTCAATG-AATCTTTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCT
* * * * *
7015188 TGAAGTTTTAATGGATTTCTTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAACAGATCT
453 TGAAGTTTCAGT-AAATTCTTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAGCAGATCT
* * *
7015253 CCTTGAAGTTTCAGTAAATTTTCTCCCTGAAATGGCGTTGAAGCGGCTAAAAGCCACAGCAGATC
517 CCTTGAAGTTTCAGTAAATTTTCTCCCTAAAATGGCGTTGAAGCGGCTAAAAGCCACAACAAATC
** * * *
7015318 TCCTTTAAAGTTTCAGTGGATCTCTTTTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCA
582 TCCTTTAAAGTTTCAGTAAATCTCTTCTCCCTGAAATAGCGTTGGAGCAGCTAAAAGCCACAGCA
7015383 GATCTCCTTGAAGTTTCAGTGGATCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACA
647 GATCTCCTTGAAGTTTCAGTGGATCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACA
*
7015448 ACAGATCTCCTTGAAGTTTCAGTAAAATTTC
712 ACAGATCTCCTTGAAGTTTCAGCAAAATTTC
*
7015479 TCCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
*
7015544 TTTTTCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAAT
66 TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAAT
*
7015609 TTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACATCAGATCTCCTTGAAGTTTCAGTGAA
131 TTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTGAA
* * * *
7015674 TCTTTTCTTCCTGAAATGGCGTTGGAGTGGCTAAAAGTCGCAGCAGATCTTCTTGAAGTTTCAAT
196 TCTTTTCTTCCTGAAATGGCGTTGGAGTGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGT
* *
7015739 GAATCTCTTCTTCCTGAAATGACATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTC
261 GAATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTC
7015804 AGTGAATCTCTTCTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGT
326 AGTGAATCTCTTCTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGT
* * * **
7015869 TTCAATGGATCTCTTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAATAGATCTCCTTGA
391 TTCAATGAATCTTTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGA
* * *
7015934 AGTTTCAGTAAATT-TTCTCCCTGAAATGGCATTGGAACGGCTAAAAGCCATAGCAGATCTCTTT
456 AGTTTCAGTAAATTCTTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAGCAGATCTC-CT
** * * *
7015998 TGAAGTTTCAGTGGATCTCTTTTTCCTAAAATGGCGTTGGAGCGGCTAAAAGCCACAACAAATCT
520 TGAAGTTTCAGTAAAT-T-TTCTCCCTAAAATGGCGTTGAAGCGGCTAAAAGCCACAACAAATCT
* * *
7016063 CC-TTGAAGTTTCAGTAAAT-T-TTCTCCCTGAAATGGCGTTGGAGTAGCTAAAAGCCACAGCAG
583 CCTTTAAAGTTTCAGTAAATCTCTTCTCCCTGAAATAGCGTTGGAGCAGCTAAAAGCCACAGCAG
*
7016125 ATCTCCTTGAAGTTTCAGTGGATCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAG
648 ATCTCCTTGAAGTTTCAGTGGATCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAA
7016190 CAGATCTCCTTGAAGTTTCAGCAAAATTTC
713 CAGATCTCCTTGAAGTTTCAGCAAAATTTC
* * *
7016220 TCCCTAAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGAATCT-
1 TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
* *
7016284 TTTCTTCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAGCAGATCTCCTTAAAGTTTCAGCAAA
66 TTT-TTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAA
* *
7016349 TTTTCTCCCTAAAATGGCGTTGGAGCGGCTAAAAGCCATAACAGATCTCCTTGAAGTTTCAGTGA
130 TTTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTGA
* * *
7016414 ATCTTTTCTTCCTAAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTTAG
195 ATCTTTTCTTCCTGAAATGGCGTTGGAGTGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
*
7016479 TGAATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAAATCTCCTTGAAGTTT
260 TGAATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTT
*
7016544 CAGTGAATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAG
325 CAGTGAATCTCTTCTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAG
* * * *
7016609 TTTCAGTGAATCTTTTCTTCTTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTA
390 TTTCAATGAATCTTTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTG
* * * ** *
7016674 AAGTTTCAGTAGATCTCTTCTCCCTAAAATGGCGTTGGAACGACTAAAAGTTACAGCAGATTTCC
455 AAGTTTCAGTAAAT-TCTTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAGCAGATCTCC
7016739 TTGAAGTTTCAG
519 TTGAAGTTTCAG
7016751 CGAAAGAAGA
Statistics
Matches: 1163, Mismatches: 96, Indels: 23
0.91 0.07 0.02
Matches are distributed among these distances:
737 59 0.05
738 3 0.00
739 127 0.11
740 4 0.00
741 781 0.67
742 34 0.03
743 113 0.10
744 42 0.04
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (742 bp):
TCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGATCTC
TTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAAT
TTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTGAA
TCTTTTCTTCCTGAAATGGCGTTGGAGTGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGT
GAATCTCTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTC
AGTGAATCTCTTCTTCCTGAAATAGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGT
TTCAATGAATCTTTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGA
AGTTTCAGTAAATTCTTCTCCCTGAAATGGCGTTGGAACGGCTAAAAGCCACAGCAGATCTCCTT
GAAGTTTCAGTAAATTTTCTCCCTAAAATGGCGTTGAAGCGGCTAAAAGCCACAACAAATCTCCT
TTAAAGTTTCAGTAAATCTCTTCTCCCTGAAATAGCGTTGGAGCAGCTAAAAGCCACAGCAGATC
TCCTTGAAGTTTCAGTGGATCTCTTTTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAG
ATCTCCTTGAAGTTTCAGCAAAATTTC
Found at i:7016911 original size:45 final size:44
Alignment explanation
Indices: 7016807--7017251 Score: 314
Period size: 44 Copynumber: 10.0 Consensus size: 44
7016797 GCAGACTGAA
* * * * **
7016807 ATAGCAGATCTGACATTCCTGTGCTTACAGTAAAACAGATCGAAG
1 ATAGCAGATTTGGCATCCCTGTGCTTATAG-GGAACAGATCGAAG
** * * *
7016852 ATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAA
1 ATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAG
*
7016895 ACAGCAGAATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAG
1 ATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAG
* ** * * * *
7016940 ATAGCAGATCTGATATTCCTGTGCTTACAGTGAAGTAGATCGAAG
1 ATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAG
** * *
7016985 ATTTCAGCA--TGGCATCCCTGTGCTTATAGGGAACA-AGTTGAAA
1 ATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAG
* *
7017028 ACAGCAGAATTTGGCATCCTTGTGCTTATAGGGAACAGATCGAAG
1 ATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAG
* ** * * *
7017073 ATAGCAGATATGATATTCCTGTGCTTACAGTGAAGCAGATCGAAG
1 ATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAG
*** * *
7017118 ATTTTAGCA--TGGCATCCCTGTGCTTATAGGGAACA-AGTTGAAA
1 ATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAGA-TCGAAG
* *
7017161 ACAGCAGATTTGGCATCCCTGTGCTTATAGGGAATAGATCGAAG
1 ATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAG
* ** * * **
7017205 ATAGCAGATCTGATATTCCTGTGCTTACAATGAAGCAGATCGAAG
1 ATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA-CAGATCGAAG
7017250 AT
1 AT
7017252 TTCATCATGG
Statistics
Matches: 306, Mismatches: 76, Indels: 36
0.73 0.18 0.09
Matches are distributed among these distances:
42 4 0.01
43 32 0.10
44 150 0.49
45 115 0.38
46 5 0.02
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
ATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAG
Found at i:7017016 original size:133 final size:133
Alignment explanation
Indices: 7016807--7017277 Score: 827
Period size: 133 Copynumber: 3.5 Consensus size: 133
7016797 GCAGACTGAA
* * *
7016807 ATAGCAGATCTGACATTCCTGTGCTTACAGTAAAACAGATCGAAGATTTCAGCATGGCATCCCTG
1 ATAGCAGATCTGATATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
*
7016872 TGTTTATAGGGAACAAGTTGAAAACAGCAGAATTTGGCATCCCTGTGCTTATAGGGAACAGATCG
66 TGCTTATAGGGAACAAGTTGAAAACAGCAGAATTTGGCATCCCTGTGCTTATAGGGAACAGATCG
7016937 AAG
131 AAG
*
7016940 ATAGCAGATCTGATATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGGCATCCCTG
1 ATAGCAGATCTGATATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
*
7017005 TGCTTATAGGGAACAAGTTGAAAACAGCAGAATTTGGCATCCTTGTGCTTATAGGGAACAGATCG
66 TGCTTATAGGGAACAAGTTGAAAACAGCAGAATTTGGCATCCCTGTGCTTATAGGGAACAGATCG
7017070 AAG
131 AAG
* *
7017073 ATAGCAGATATGATATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCATGGCATCCCTG
1 ATAGCAGATCTGATATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
*
7017138 TGCTTATAGGGAACAAGTTGAAAACAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAATAGATCG
66 TGCTTATAGGGAACAAGTTGAAAACAGCAGAATTTGGCATCCCTGTGCTTATAGGGAACAGATCG
7017202 AAG
131 AAG
* *
7017205 ATAGCAGATCTGATATTCCTGTGCTTACAATGAAGCAGATCGAAGATTTCATCATGGCATCCCTG
1 ATAGCAGATCTGATATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
*
7017270 TGTTTATA
66 TGCTTATA
7017278 AGGATCAAAG
Statistics
Matches: 322, Mismatches: 16, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
132 103 0.32
133 219 0.68
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (133 bp):
ATAGCAGATCTGATATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
TGCTTATAGGGAACAAGTTGAAAACAGCAGAATTTGGCATCCCTGTGCTTATAGGGAACAGATCG
AAG
Found at i:7017849 original size:14 final size:14
Alignment explanation
Indices: 7017830--7017870 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
7017820 AAAAATGAAA
*
7017830 TTCTTTGTATTTTT
1 TTCTTTGGATTTTT
7017844 TTCTTTGGATTTTT
1 TTCTTTGGATTTTT
7017858 TTCTTTGGATTTT
1 TTCTTTGGATTTT
7017871 GGGCTATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.07, C:0.07, G:0.12, T:0.73
Consensus pattern (14 bp):
TTCTTTGGATTTTT
Found at i:7018860 original size:16 final size:16
Alignment explanation
Indices: 7018836--7018880 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
7018826 CTTCCTTTAC
7018836 TATTATTTTTATTTTT
1 TATTATTTTTATTTTT
*
7018852 TATTTTTTTTA-TTTT
1 TATTATTTTTATTTTT
*
7018867 TATCATTTATTATT
1 TATTATTT-TTATT
7018881 ATTATTGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 10 0.42
16 13 0.54
17 1 0.04
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (16 bp):
TATTATTTTTATTTTT
Found at i:7018875 original size:22 final size:22
Alignment explanation
Indices: 7018836--7018886 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
7018826 CTTCCTTTAC
** *
7018836 TATTATTTTTATTTTTTATTTT
1 TATTATTTTTATCATTTATTAT
*
7018858 TTTTATTTTTATCATTTATTAT
1 TATTATTTTTATCATTTATTAT
7018880 TATTATT
1 TATTATT
7018887 GATATGACGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (22 bp):
TATTATTTTTATCATTTATTAT
Found at i:7024245 original size:13 final size:13
Alignment explanation
Indices: 7024229--7024253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7024219 TTTTCACAGC
7024229 ACTTTTCAAAAGT
1 ACTTTTCAAAAGT
7024242 ACTTTTCAAAAG
1 ACTTTTCAAAAG
7024254 CATTGTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
ACTTTTCAAAAGT
Found at i:7024255 original size:26 final size:26
Alignment explanation
Indices: 7024190--7024263 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 26
7024180 TTTAAACTAA
*
7024190 ACTTCTCAAAAGCACTTCTCAAAAAT
1 ACTTTTCAAAAGCACTTCTCAAAAAT
* * * *
7024216 ATTTTTTC-ACAGCACTTTTCAAAAGT
1 A-CTTTTCAAAAGCACTTCTCAAAAAT
*
7024242 ACTTTTCAAAAGCA-TTGTCAAA
1 ACTTTTCAAAAGCACTTCTCAAA
7024264 CTAGCCATTA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
25 12 0.32
26 22 0.58
27 4 0.11
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.34
Consensus pattern (26 bp):
ACTTTTCAAAAGCACTTCTCAAAAAT
Found at i:7024618 original size:7 final size:7
Alignment explanation
Indices: 7024608--7024637 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
7024598 CTTGACTCTC
7024608 TCAATTT
1 TCAATTT
7024615 TCAATTT
1 TCAATTT
*
7024622 TCAGTTT
1 TCAATTT
7024629 TCAATTT
1 TCAATTT
7024636 TC
1 TC
7024638 GACAAAAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.23, C:0.17, G:0.03, T:0.57
Consensus pattern (7 bp):
TCAATTT
Found at i:7025286 original size:30 final size:30
Alignment explanation
Indices: 7025252--7025309 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
7025242 TTCAAGATTG
7025252 AATGTTCATTTTATCTCTTAATTTTTTTAA
1 AATGTTCATTTTATCTCTTAATTTTTTTAA
*
7025282 AATGTTGATTTTATCTCTTAATTTTTTT
1 AATGTTCATTTTATCTCTTAATTTTTTT
7025310 TAACTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.24, C:0.09, G:0.05, T:0.62
Consensus pattern (30 bp):
AATGTTCATTTTATCTCTTAATTTTTTTAA
Found at i:7036586 original size:30 final size:30
Alignment explanation
Indices: 7036552--7036611 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
7036542 TATATAAAAG
7036552 ACAAAAATACCTTTAAATTAATATTATTGC
1 ACAAAAATACCTTTAAATTAATATTATTGC
*
7036582 ACAAAAATACCTTTAAATTGATATTATTGC
1 ACAAAAATACCTTTAAATTAATATTATTGC
7036612 TTTTTTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.45, C:0.13, G:0.05, T:0.37
Consensus pattern (30 bp):
ACAAAAATACCTTTAAATTAATATTATTGC
Found at i:7037254 original size:3 final size:3
Alignment explanation
Indices: 7037246--7037623 Score: 133
Period size: 3 Copynumber: 125.3 Consensus size: 3
7037236 GGGGAGAGTG
* * * *
7037246 TTA TTA TTA TTA TTA TTA TTA TT- CTA TATA ATA TTA TTG TT- TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
* * * * * *
7037290 TT- TT- TTA TTA TTA TTA GTA GTAA CGTA ATA GTA TTT TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA
* * * * *
7037334 TTA TTT TTA TTT TTA CCTTT TTA TTA CTA TTA TTA TTAA TCTA CTA TTA
1 TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA TTA TT-A T-TA TTA TTA
* * * * *
7037383 TTA TTT TTA TTA ATA -TA GTA TTA TT- TTT TTA -TA TTG TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
7037428 TTA GTA CGTA -TA TTA TTA TTAA TGTA TCA TTG TTA TT- TTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TTA TTA
* * * *
7037474 CTC TTA TTA CTC TTA TT- TCTA TTA TTA TTA TTA TTA TTA TT- TTCA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT-A
* * * *
7037519 TTA CTTCCA TTA TTA TTA TCA TTA TTT TCTA TTA TCA TCA TTA -TA TTTA
1 TTA -TT--A TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA -TTA
* * * *
7037568 CTT- TTT TTA ATA TTA TTA TCA TTA -TA TT- TT- TTAA TTA TTA CTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
*
7037611 TTA TTT TTA TTA T
1 TTA TTA TTA TTA T
7037624 CTGTCCTATT
Statistics
Matches: 281, Mismatches: 62, Indels: 64
0.69 0.15 0.16
Matches are distributed among these distances:
2 32 0.11
3 215 0.77
4 27 0.10
5 6 0.02
6 1 0.00
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:7037406 original size:23 final size:23
Alignment explanation
Indices: 7037355--7037414 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
7037345 TTTACCTTTT
* * *
7037355 TATTACTATTATTATTAATCTAC
1 TATTATTATTTTTATTAATATAC
*
7037378 TATTATTATTTTTATTAATATAG
1 TATTATTATTTTTATTAATATAC
7037401 TATTATT-TTTTTAT
1 TATTATTATTTTTAT
7037415 ATTGTTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
22 7 0.21
23 26 0.79
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (23 bp):
TATTATTATTTTTATTAATATAC
Found at i:7042194 original size:11 final size:11
Alignment explanation
Indices: 7042174--7042227 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
7042164 TTAGAATATA
*
7042174 CCCATTCCTTG
1 CCCATACCTTG
7042185 CCCATACCTTG
1 CCCATACCTTG
*
7042196 CCCATACCTTT
1 CCCATACCTTG
*
7042207 CCCATACC-TA
1 CCCATACCTTG
7042217 CCCATACCTTG
1 CCCATACCTTG
7042228 GAAAGGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:7042787 original size:18 final size:18
Alignment explanation
Indices: 7042766--7042832 Score: 80
Period size: 18 Copynumber: 3.7 Consensus size: 18
7042756 TTTACGTTAT
**
7042766 TATTCACGTATACGACAC
1 TATTCACGTATACGGTAC
* *
7042784 TATTCACATATATGGTAC
1 TATTCACGTATACGGTAC
*
7042802 TATTCATGTATACGGTAC
1 TATTCACGTATACGGTAC
*
7042820 TATTTACGTATAC
1 TATTCACGTATAC
7042833 AGTAGTTGGG
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (18 bp):
TATTCACGTATACGGTAC
Found at i:7046901 original size:11 final size:11
Alignment explanation
Indices: 7046887--7046932 Score: 67
Period size: 11 Copynumber: 4.3 Consensus size: 11
7046877 TACCCATTCT
7046887 TTGCCCATACC
1 TTGCCCATACC
7046898 TTGCCCATACC
1 TTGCCCATACC
*
7046909 TTTCCCATACC
1 TTGCCCATACC
*
7046920 -TACCCATACC
1 TTGCCCATACC
7046930 TTG
1 TTG
7046933 GAAAGGTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 9 0.29
11 22 0.71
ACGTcount: A:0.20, C:0.43, G:0.07, T:0.30
Consensus pattern (11 bp):
TTGCCCATACC
Found at i:7046915 original size:22 final size:22
Alignment explanation
Indices: 7046877--7046931 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
7046867 TATTAGAATA
*
7046877 TACCCAT-TCTTTGCCCATACC
1 TACCCATACCTTTGCCCATACC
*
7046898 TTGCCCATACCTTT-CCCATACC
1 -TACCCATACCTTTGCCCATACC
7046920 TACCCATACCTT
1 TACCCATACCTT
7046932 GGAAAGGTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.38
22 14 0.48
23 4 0.14
ACGTcount: A:0.20, C:0.44, G:0.04, T:0.33
Consensus pattern (22 bp):
TACCCATACCTTTGCCCATACC
Found at i:7048418 original size:18 final size:18
Alignment explanation
Indices: 7048395--7048431 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7048385 AACTTAATAT
7048395 TTTAATGTTATTGATTAA
1 TTTAATGTTATTGATTAA
7048413 TTTAATGTTATTGATTAA
1 TTTAATGTTATTGATTAA
7048431 T
1 T
7048432 GCAGGTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (18 bp):
TTTAATGTTATTGATTAA
Found at i:7056768 original size:41 final size:41
Alignment explanation
Indices: 7056691--7056768 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
7056681 ATCTGCTCCA
* * * *
7056691 CTGCTCCACTGCAGCTTTAGTAAGATAAGGTTTGTTTTGAT
1 CTGCTCCACTGCAACTTCAGTAAGATAAGATCTGTTTTGAT
*
7056732 CTGCTCTACTGCAACTTCAG-AGAGATAAGATCTGTTT
1 CTGCTCCACTGCAACTTCAGTA-AGATAAGATCTGTTT
7056769 ATTCATAGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.03
41 30 0.97
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (41 bp):
CTGCTCCACTGCAACTTCAGTAAGATAAGATCTGTTTTGAT
Found at i:7057030 original size:44 final size:44
Alignment explanation
Indices: 7056968--7057074 Score: 169
Period size: 44 Copynumber: 2.4 Consensus size: 44
7056958 GCCCGTTACC
*
7056968 CTACTGCTTAGGGGTTTAAAGCCCATCGCTTTCGATCTGTTTCA
1 CTACTGCTTAGAGGTTTAAAGCCCATCGCTTTCGATCTGTTTCA
* * *
7057012 CTGCTGCTTAGAGGTTTAAGGCCCATCGCTTTCGATCTGTTTCC
1 CTACTGCTTAGAGGTTTAAAGCCCATCGCTTTCGATCTGTTTCA
*
7057056 CTACTGCTTAGAGGGTTAA
1 CTACTGCTTAGAGGTTTAA
7057075 GATCTGTAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (44 bp):
CTACTGCTTAGAGGTTTAAAGCCCATCGCTTTCGATCTGTTTCA
Found at i:7057133 original size:87 final size:86
Alignment explanation
Indices: 7057042--7057466 Score: 324
Period size: 87 Copynumber: 4.9 Consensus size: 86
7057032 GCCCATCGCT
* *
7057042 TTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGTT
1 TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCT
*
7057107 TAAGGGG-TTAAGG-CTTGTCACA
66 T-AGGGGTTTAAGGTC-TGT-AAA
* * * *
7057129 TTCGATTTGTTTCCCTAATGCTTAGGGGGTTTAGATCTGTAAATTCAACTTGTTACCCTACTGCT
1 TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCT
7057194 TAGGGGTTTAAGGTCTGTAAA
66 TAGGGGTTTAAGGTCTGTAAA
* * * * ** * * *
7057215 TTCGA-CTTGCTACCCTACTGCTTAGGGGGTTAA-AGCCCGTCACCTTCGATCTGTTTCCCTACT
1 TTCGATC-TGTTTCCCTACTGCTTAGGGGGTTAAGA-TCTGT-AAATTCAACCTGTTACCCTACT
* *
7057278 GCTTAGGGGGTTAAGATCTGTAAA
63 GCTTAGGGGTTTAAGGTCTGTAAA
* * * * *** * * * *
7057302 TTC-AGCCTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTCACCCTCGATCTGTTTCCCTAAT
1 TTCGA-TCTGTTTCCCTACTGCTTAGGGGGTTAAGATC-TGT-AAATTCAACCTGTTACCCTACT
* *
7057365 GCTTAGAGGGATT-AGATCTGTAAA
63 GCTTAG-GGGTTTAAGGTCTGTAAA
* * * * * *** * *
7057389 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTTGGCTTGCTACCCTACTGCT
1 TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCT
* *
7057454 TAAGGGCTTAAGG
66 TAGGGGTTTAAGG
7057467 CTCGTGAGTT
Statistics
Matches: 282, Mismatches: 43, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
85 6 0.02
86 58 0.21
87 209 0.74
88 9 0.03
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.35
Consensus pattern (86 bp):
TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCT
TAGGGGTTTAAGGTCTGTAAA
Found at i:7057229 original size:130 final size:130
Alignment explanation
Indices: 7057048--7057336 Score: 418
Period size: 130 Copynumber: 2.2 Consensus size: 130
7057038 CGCTTTCGAT
* * * *
7057048 CTGTTTCCCTACTGCTTAGAGGG-TTAAGATCTGTAAATTCAACCTGTTACCCTACTGTTTAAGG
1 CTGTTACCCTACTGCTTAG-GGGTTTAAGGTCTGTAAATTCAACCTGCTACCCTACTGCTTAAGG
* ** * *
7057112 GGTTAAGGCTTGTCACATTCGATTTGTTTCCCTAATGCTTAGGGGGTTTAGATCTGTAAATTCAA
65 GGTTAAAGCCCGTCACATTCGATCTGTTTCCCTAATGCTTAGGGGGTTAAGATCTGTAAATTCAA
7057177 C
130 C
* * * *
7057178 TTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCGACTTGCTACCCTACTGCTTAGGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCAACCTGCTACCCTACTGCTTAAGGG
* * *
7057243 GTTAAAGCCCGTCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
66 GTTAAAGCCCGTCACATTCGATCTGTTTCCCTAATGCTTAGGGGGTTAAGATCTGTAAATTCAAC
7057308 CTGTTACCCTACTGCTTAGGGGTTTAAGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGG
7057337 CTTGTCACCC
Statistics
Matches: 141, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
129 3 0.02
130 138 0.98
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.35
Consensus pattern (130 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCAACCTGCTACCCTACTGCTTAAGGG
GTTAAAGCCCGTCACATTCGATCTGTTTCCCTAATGCTTAGGGGGTTAAGATCTGTAAATTCAAC
Found at i:7057338 original size:217 final size:217
Alignment explanation
Indices: 7057015--7057464 Score: 713
Period size: 217 Copynumber: 2.1 Consensus size: 217
7057005 TGTTTCACTG
* * * * *
7057015 CTGCTTAGAGGTTTAAGGCCCATCGCTTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCT
1 CTGCTTAGGGGCTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCT
* * *
7057080 GTAAATTCAACCTGTTACCCTACTGTTTAAGGGGTTAAGGCTTGTCACATTCGATTTGTTTCCCT
66 GTAAATTCAACCTGTTACCCTACTGCTTAAGGGGTTAAGGCTTGTCACACTCGATCTGTTTCCCT
* * *
7057145 AATGCTTAGGGGGTTTAGATCTGTAAATTCAACTTGTTACCCTACTGCTTAGGGGTTTAAGGTCT
131 AATGCTTAGAGGGATTAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCT
7057210 GTAAATTCGACTTGCTACCCTA
196 GTAAATTCGACTTGCTACCCTA
* * *
7057232 CTGCTTAGGGGGTTAAAGCCCGTCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT
1 CTGCTTAGGGGCTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCT
* *
7057297 GTAAATTCAGCCTGTTACCCTACTGCTT-AGGGGTTTAAGGCTTGTCACCCTCGATCTGTTTCCC
66 GTAAATTCAACCTGTTACCCTACTGCTTAAGGGG-TTAAGGCTTGTCACACTCGATCTGTTTCCC
7057361 TAATGCTTAGAGGGATTAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTC
130 TAATGCTTAGAGGGATTAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTC
* *
7057426 TGTAAATTTGGCTTGCTACCCTA
195 TGTAAATTCGACTTGCTACCCTA
*
7057449 CTGCTTAAGGGCTTAA
1 CTGCTTAGGGGCTTAA
7057465 GGCTCGTGAG
Statistics
Matches: 213, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
216 5 0.02
217 208 0.98
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (217 bp):
CTGCTTAGGGGCTTAAAGCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCT
GTAAATTCAACCTGTTACCCTACTGCTTAAGGGGTTAAGGCTTGTCACACTCGATCTGTTTCCCT
AATGCTTAGAGGGATTAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCT
GTAAATTCGACTTGCTACCCTA
Found at i:7057399 original size:130 final size:131
Alignment explanation
Indices: 7057049--7057469 Score: 372
Period size: 130 Copynumber: 3.2 Consensus size: 131
7057039 GCTTTCGATC
* * * * * * * *
7057049 TGTTTCCCTACTGCTTAGAGGG-TTAA-GATCTGTAAATTCAACCTGTTACCCTACTGTTTAAGG
1 TGTTACCCTACTGCTTAG-GGGTTTAAGGCTCTGTAAACTCGACTTGCTACCCTAATGCTT-AGG
* ** * * ** * *
7057112 GG-TTAAGGCTTGTCACATTCGATTTGTTTCCCTAATGCTTAGGGGGTTTAGATCTGTAAATTCA
64 GGATTAAAGCCCGTCAAATTCAACCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCA
*
7057176 ACT
129 GCT
* *
7057179 TGTTACCCTACTGCTTAGGGGTTTAAGG-TCTGTAAATTCGACTTGCTACCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCTCTGTAAACTCGACTTGCTACCCTAATGCTTAGGGG
* ** * *
7057243 GTTAAAGCCCGTCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
66 ATTAAAGCCCGTCAAATTCAACCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
*
7057308 C
131 T
** * *
7057309 TGTTACCCTACTGCTTAGGGGTTTAAGGCT-TGTCACCCTCGA-TCTGTTTCCCTAATGCTTAGA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCTCTGT-AAACTCGACT-TGCTACCCTAATGCTTAG-
* * * * * * *
7057372 GGGATTAGA-TCTGT-AAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTT
63 GGGATTAAAGCCCGTCAAATTCAACCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTC
*
7057435 GGCT
128 AGCT
* * *
7057439 TGCTACCCTACTGCTTAAGGGCTTAAGGCTC
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCTC
7057470 GTGAGTTCAC
Statistics
Matches: 246, Mismatches: 37, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
129 8 0.03
130 206 0.84
131 25 0.10
132 7 0.03
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (131 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGCTCTGTAAACTCGACTTGCTACCCTAATGCTTAGGGG
ATTAAAGCCCGTCAAATTCAACCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
T
Found at i:7069941 original size:14 final size:15
Alignment explanation
Indices: 7069916--7069957 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7069906 AGTATTAAGG
*
7069916 TATATACATAAAA-A
1 TATATATATAAAAGA
7069930 TATA-ATATTAAAAGA
1 TATATATA-TAAAAGA
7069945 TATATATATAAAA
1 TATATATATAAAA
7069958 TGTATACATA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 2 0.08
14 9 0.38
15 10 0.42
16 3 0.12
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (15 bp):
TATATATATAAAAGA
Found at i:7069983 original size:13 final size:13
Alignment explanation
Indices: 7069926--7069984 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
7069916 TATATACATA
7069926 AAAATATAATATT
1 AAAATATAATATT
*
7069939 AAAAGATATATATAT
1 AAAATATA-ATAT-T
* *
7069954 AAAATGT-ATA-C
1 AAAATATAATATT
*
7069965 ATAATATAATATT
1 AAAATATAATATT
7069978 AAAATAT
1 AAAATAT
7069985 TTACACAGTA
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
11 5 0.15
12 3 0.09
13 16 0.47
14 4 0.12
15 6 0.18
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (13 bp):
AAAATATAATATT
Found at i:7069989 original size:24 final size:24
Alignment explanation
Indices: 7069944--7069998 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
7069934 ATATTAAAAG
*
7069944 ATATATATATAAAATGTATACATA
1 ATATATATATAAAATATATACATA
* *
7069968 ATATA-ATATTAAAATATTTACACA
1 ATATATATA-TAAAATATATACATA
*
7069992 GTATATA
1 ATATATA
7069999 CATATTAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 3 0.12
24 21 0.84
25 1 0.04
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (24 bp):
ATATATATATAAAATATATACATA
Found at i:7071387 original size:21 final size:23
Alignment explanation
Indices: 7071363--7071408 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
7071353 GTGCAACTTG
*
7071363 AGCGGT-G-GCAGGTGGTTGACA
1 AGCGGTGGAGCAGGTGGCTGACA
7071384 AGCGGTGGAGCAGGTGGCTGACA
1 AGCGGTGGAGCAGGTGGCTGACA
7071407 AG
1 AG
7071409 GCTAGGGCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 1 0.05
23 15 0.68
ACGTcount: A:0.22, C:0.15, G:0.48, T:0.15
Consensus pattern (23 bp):
AGCGGTGGAGCAGGTGGCTGACA
Found at i:7073377 original size:15 final size:15
Alignment explanation
Indices: 7073359--7073390 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7073349 AGCAATTTAA
7073359 TTTTTTTAATTTTCC
1 TTTTTTTAATTTTCC
*
7073374 TTTTTTTATTTTTCC
1 TTTTTTTAATTTTCC
7073389 TT
1 TT
7073391 CTCTTCTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTTTAATTTTCC
Found at i:7075779 original size:11 final size:11
Alignment explanation
Indices: 7075763--7075805 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
7075753 TAGAATATAC
7075763 CCCATACCTTG
1 CCCATACCTTG
*
7075774 CCCATACCTTT
1 CCCATACCTTG
*
7075785 CCCATACC-TA
1 CCCATACCTTG
7075795 CCCATACCTTG
1 CCCATACCTTG
7075806 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:7075800 original size:21 final size:22
Alignment explanation
Indices: 7075763--7075804 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7075753 TAGAATATAC
*
7075763 CCCATACCTTGCCCATACCTTT
1 CCCATACCTTACCCATACCTTT
7075785 CCCATACC-TACCCATACCTT
1 CCCATACCTTACCCATACCTT
7075805 GGAAAGGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCATACCTTACCCATACCTTT
Found at i:7076363 original size:18 final size:18
Alignment explanation
Indices: 7076337--7076411 Score: 96
Period size: 18 Copynumber: 4.2 Consensus size: 18
7076327 TACGACCGTT
7076337 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
7076355 TATGGTACTATTCACTTA
1 TACGGTACTATTCACGTA
** *
7076373 TACAATACTATTTACGTA
1 TACGGTACTATTCACGTA
*
7076391 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
7076409 TAC
1 TAC
7076412 AGTAGTTGGG
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.37
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:7076390 original size:36 final size:36
Alignment explanation
Indices: 7076342--7076412 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
7076332 CCGTTTACGG
* *
7076342 TACTATTCACGTATATGGTACTATTCACTTATACAA
1 TACTATTCACGTATACGGTACTATTCACGTATACAA
* *
7076378 TACTATTTACGTATACGGTACTGTTCACGTATACA
1 TACTATTCACGTATACGGTACTATTCACGTATACA
7076413 GTAGTTGGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (36 bp):
TACTATTCACGTATACGGTACTATTCACGTATACAA
Found at i:7085507 original size:5 final size:5
Alignment explanation
Indices: 7085497--7085526 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
7085487 TTATGTTTTA
7085497 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
7085527 GTATATAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:7085985 original size:17 final size:17
Alignment explanation
Indices: 7085963--7085997 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7085953 GTATGAATTA
7085963 AGATAGAAAAGTAAGTG
1 AGATAGAAAAGTAAGTG
7085980 AGATAGAAAAGTAAGTG
1 AGATAGAAAAGTAAGTG
7085997 A
1 A
7085998 ATTTAGTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.17
Consensus pattern (17 bp):
AGATAGAAAAGTAAGTG
Found at i:7087202 original size:21 final size:21
Alignment explanation
Indices: 7087148--7087208 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
7087138 ATCGATTAGG
*
7087148 CACTTTATGTGTCGTATTTCAGG
1 CACTTTATGTGTCGTA--TCAGA
* **
7087171 CACCTCGTGTGTCGTATCAGA
1 CACTTTATGTGTCGTATCAGA
*
7087192 CACTTTATGTGTTGTAT
1 CACTTTATGTGTCGTAT
7087209 ACTGATCAGG
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
21 17 0.57
23 13 0.43
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.41
Consensus pattern (21 bp):
CACTTTATGTGTCGTATCAGA
Found at i:7089322 original size:105 final size:106
Alignment explanation
Indices: 7089123--7089404 Score: 399
Period size: 109 Copynumber: 2.6 Consensus size: 106
7089113 ATTGATATAC
*
7089123 AAAATACGAGTTTTAAAAAAAAAATTTGGATGCTGGCCTGTCAATGACCGGCACCCAGTA-CAAA
1 AAAATACGAGTTTT-AAAAAAAAATTTGG-TGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAA
* *
7089187 AAAGAATTCAAATTTTTTTTCAAAAA-TTTTTTTTGCTCTCTA
64 AAAAAATTCAAAATTTTTTTCAAAAATTTTTTTTTGCTCTCTA
*
7089229 AAAATACGAGTTTT-AAAAAAAATTTAGGTGCTGGCTTGTCAATGGCCGGCACCCAGTACCAAAA
1 AAAATACGAGTTTTAAAAAAAAATTT-GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAAA
7089293 AAAAATTCAAAATTTTTTTCAAAAATTTTTTTTTTGCTCTCTA
65 AAAAATTCAAAATTTTTTTCAAAAA-TTTTTTTTTGCTCTCTA
* * * * * *
7089336 AAAATATGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTTAATGGCAGACACCTAGTGCCAAA
1 AAAATACGAGTTTT-AAAAAAAAATTT-GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAA
7089401 AAAA
64 AAAA
7089405 TTCAAATTGC
Statistics
Matches: 158, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
104 39 0.25
105 30 0.19
106 14 0.09
107 29 0.18
109 46 0.29
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (106 bp):
AAAATACGAGTTTTAAAAAAAAATTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAAAA
AAAATTCAAAATTTTTTTCAAAAATTTTTTTTTGCTCTCTA
Found at i:7089405 original size:107 final size:105
Alignment explanation
Indices: 7089123--7089410 Score: 409
Period size: 107 Copynumber: 2.7 Consensus size: 105
7089113 ATTGATATAC
* * *
7089123 AAAATACGAGTTTTAAAAAAAAAATTTGGATGCTGGCCTGTCAATGACCGGCACCCAGTACAAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAA
*
7089188 AAGAATTCAAATTTTTTTTCAAAAATTTTTTTTGCTCTCTA
66 AA-AATTCAAAATTTTTTTCAAAAATTTTTTTTGCTCTCTA
* *
7089229 AAAATACGAGTTTT--AAAAAAAATTTAGGTGCTGGCTTGTCAATGGCCGGCACCCAGTACCAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACC--A
7089292 AAAAAATTCAAAATTTTTTTCAAAAATTTTTTTTTTGCTCTCTA
64 AAAAAATTCAAAATTTTTTTCAAAAA--TTTTTTTTGCTCTCTA
* * * * * *
7089336 AAAATATGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTTAATGGCAGACACCTAGTGCCAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAA
7089401 AAAATTCAAA
66 AAAATTCAAA
7089411 TTGCTCTCTA
Statistics
Matches: 162, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
104 41 0.25
105 21 0.13
106 19 0.12
107 42 0.26
109 39 0.24
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (105 bp):
AAAATACGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAA
AAAATTCAAAATTTTTTTCAAAAATTTTTTTTGCTCTCTA
Found at i:7089415 original size:85 final size:86
Alignment explanation
Indices: 7089326--7089496 Score: 254
Period size: 85 Copynumber: 2.0 Consensus size: 86
7089316 AATTTTTTTT
* * *
7089326 TTGCTCTCTAAAAATATGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTTAATGGCAGACACC
1 TTGCTCTCTAAAAATACGAGTTTTAAAAAAAAAATTTAGGTGCTGGCCTGTCAATGGCAGACACC
* * *
7089391 TAGTGC-CAAAAAAATTCAAA
66 CAGTACAAAAAAAAATTCAAA
* * *
7089411 TTGCTCTCTAAAAATACGAGTTTTAAAAAAAAAATTTAGGTGCTGGCTTGTCAATGGCCGGCACC
1 TTGCTCTCTAAAAATACGAGTTTTAAAAAAAAAATTTAGGTGCTGGCCTGTCAATGGCAGACACC
7089476 CAGTACAAAAAAAAATTCAAA
66 CAGTACAAAAAAAAATTCAAA
7089497 AATTTTTTTC
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
85 63 0.83
86 13 0.17
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (86 bp):
TTGCTCTCTAAAAATACGAGTTTTAAAAAAAAAATTTAGGTGCTGGCCTGTCAATGGCAGACACC
CAGTACAAAAAAAAATTCAAA
Found at i:7089425 original size:107 final size:105
Alignment explanation
Indices: 7089123--7089412 Score: 381
Period size: 104 Copynumber: 2.7 Consensus size: 105
7089113 ATTGATATAC
* * *
7089123 AAAATACGAGTTTTAAAAAAAAAATTTGGATGCTGGCCTGTCAATGACCGGCACCCAGTACAAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAA
*
7089188 AAGAATTCAAATTTTTTTTCAAAAA-TTTTTTTTGCTCTCTA
66 AA-AATTCAAATTTTTTCT-AAAAATTTTTTTTTGCTCTCTA
* *
7089229 AAAATACGAGTTTT--AAAAAAAATTTAGGTGCTGGCTTGTCAATGGCCGGCACCCAGTACCAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACC--A
7089292 AAAAAATTCAAAATTTTTT-TCAAAAATTTTTTTTTTGCTCTCTA
64 AAAAAATTC-AAATTTTTTCT-AAAAA-TTTTTTTTTGCTCTCTA
* * * * * *
7089336 AAAATATGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTTAATGGCAGACACCTAGTGCCAAA
1 AAAATACGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAA
7089401 AAAATTCAAATT
66 AAAATTCAAATT
7089413 GCTCTCTAAA
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
104 41 0.25
105 12 0.07
106 33 0.20
107 39 0.24
109 39 0.24
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (105 bp):
AAAATACGAGTTTTAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACCAAA
AAAATTCAAATTTTTTCTAAAAATTTTTTTTTGCTCTCTA
Found at i:7090757 original size:20 final size:21
Alignment explanation
Indices: 7090724--7090773 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
7090714 TTAACCGAAC
*
7090724 ATTTAATTATATTAAATTAAT
1 ATTTAATTAAATTAAATTAAT
7090745 ATTT-ATTAAATTAAATTAATT
1 ATTTAATTAAATTAAATTAA-T
*
7090766 TTTTAATT
1 ATTTAATT
7090774 TTTTTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 14 0.56
21 8 0.32
22 3 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTTAATTAAATTAAATTAAT
Found at i:7097595 original size:13 final size:13
Alignment explanation
Indices: 7097577--7097606 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7097567 GGAAATATAG
7097577 TATTATATGTTCT
1 TATTATATGTTCT
7097590 TATTATATGTTCT
1 TATTATATGTTCT
7097603 TATT
1 TATT
7097607 GTTGTTCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.63
Consensus pattern (13 bp):
TATTATATGTTCT
Found at i:7102979 original size:18 final size:18
Alignment explanation
Indices: 7102956--7103007 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
7102946 CACTAAGACT
7102956 TATAATAAATACAATAAA
1 TATAATAAATACAATAAA
*
7102974 TATAATAAATACAA-ATAT
1 TATAATAAATACAATA-AA
7102992 TATAATAAATA-AATAA
1 TATAATAAATACAATAA
7103008 CAGAAAATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 4 0.13
18 27 0.87
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
TATAATAAATACAATAAA
Found at i:7103255 original size:38 final size:38
Alignment explanation
Indices: 7103204--7103280 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
7103194 CGGAGGGACT
7103204 AAATTGAAAACCATGAAAAATTCTGGGGCCAAATTAAA
1 AAATTGAAAACCATGAAAAATTCTGGGGCCAAATTAAA
7103242 AAATTGAAAACCATGAAAAATTCTGGGGCCAAATTAAA
1 AAATTGAAAACCATGAAAAATTCTGGGGCCAAATTAAA
7103280 A
1 A
7103281 CATAAAAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.21
Consensus pattern (38 bp):
AAATTGAAAACCATGAAAAATTCTGGGGCCAAATTAAA
Found at i:7103560 original size:16 final size:16
Alignment explanation
Indices: 7103519--7103563 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
7103509 AAAAGAAAAA
*
7103519 AAAGAGAGAGAAGGGAG
1 AAAG-GAGAGAGGGGAG
7103536 AAA--AGAGAGGGGAG
1 AAAGGAGAGAGGGGAG
7103550 AAAGGAGAGAGGGG
1 AAAGGAGAGAGGGG
7103564 TTCCGGCCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 13 0.52
16 9 0.36
17 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (16 bp):
AAAGGAGAGAGGGGAG
Done.