Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 241 of 316
Found at i:79402961 original size:27 final size:27
Alignment explanation
Indices: 79402931--79403272 Score: 139
Period size: 27 Copynumber: 12.7 Consensus size: 27
79402921 TACCCTACAG
* **
79402931 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*** * * * *
79402958 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
79402985 GGGTACTTT-GGTAATTATACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
* *
79403012 GGGTATTTCAATAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
79403039 GGGTATTTCAGTAATTTCACAAAT-TA
1 GGGTATTTCAGTAATTTTACAAATCGA
** *
79403065 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTCAGTAATTTTACAAATCGA
* *
79403092 GAGGTATTT-TGATAATTTTACAAA-CCA
1 G-GGTATTTCAG-TAATTTTACAAATCGA
** *
79403119 GGGGTATTTTGGTAATTTTACAAA-CTAA
1 -GGGTATTTCAGTAATTTTACAAATC-GA
* * *
79403147 GGGTATTT-TGAAAATTTTACAAA-CCA
1 GGGTATTTCAG-TAATTTTACAAATCGA
** *
79403173 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTCAGTAATTTTACAAATCGA
** * * * * *
79403200 GGGGTATTTTGGTGATTTCATAAACCAA
1 -GGGTATTTCAGTAATTTTACAAATCGA
*
79403228 GGGTA-TTCTAGTAATTTTACAAA-CCA
1 GGGTATTTC-AGTAATTTTACAAATCGA
**
79403254 GGGGTATTTTGGTAATTTT
1 -GGGTATTTCAGTAATTTT
79403273 GTAAACTAAG
Statistics
Matches: 252, Mismatches: 47, Indels: 32
0.76 0.14 0.10
Matches are distributed among these distances:
26 12 0.05
27 232 0.92
28 8 0.03
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:79403053 original size:81 final size:80
Alignment explanation
Indices: 79402931--79403115 Score: 192
Period size: 81 Copynumber: 2.3 Consensus size: 80
79402921 TACCCTACAG
** * *
79402931 GGGTATTTCAATAATTTTGTAAATCGAGGGTAAAACGGTAA-TTCTATAAATCAAGGGTACTTTG
1 GGGTATTTCAATAATTTTACAAATCGAGGGTAAAACAGTAATTTC-ACAAATCAAGGGTACTTTG
*
79402995 GTAATTATACAAGTCGA
65 GTAATTATACAA-ACGA
* *** * * *
79403012 GGGTATTTCAATAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGG
1 GGGTATTTCAATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGG
* *
79403077 TAATTTTACAAACTA
66 TAATTATACAAACGA
**
79403092 GAGGTATTTTGATAATTTTACAAA
1 G-GGTATTTCAATAATTTTACAAA
79403116 CCAGGGGTAT
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 3 0.04
81 79 0.93
82 3 0.04
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (80 bp):
GGGTATTTCAATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGG
TAATTATACAAACGA
Found at i:79403124 original size:81 final size:81
Alignment explanation
Indices: 79402983--79403308 Score: 332
Period size: 81 Copynumber: 4.0 Consensus size: 81
79402973 TCTATAAATC
* * ** ** **
79402983 AAGGGTACTTTGGTAATTATACAAGTC-GAGGGTATTTCAATAATTTTACAAGTC-GAGGGTATT
1 AAGGGTATTTTGGTAATTTTACAAACCAGA-GGTATTTTGATAATTTTACAAACCAG-GGGTATT
** *
79403046 TCAGTAATTTCACAAATT
64 TTGGTAATTTCACAAACT
* *
79403064 AGGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
1 AAGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
*
79403129 GGTAATTTTACAAACT
66 GGTAATTTCACAAACT
** * * *
79403145 AAGGGTATTTTGAAAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 AAGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
* * *
79403210 GGTGATTTCATAAACC
66 GGTAATTTCACAAACT
* * * * ** * *
79403226 AAGGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTT
1 AAGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
* *
79403291 GATAATTTCATAAACT
66 GGTAATTTCACAAACT
79403307 AA
1 AA
79403309 AGTATTCTAA
Statistics
Matches: 208, Mismatches: 35, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
81 205 0.99
82 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.38
Consensus pattern (81 bp):
AAGGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
GGTAATTTCACAAACT
Found at i:79403278 original size:27 final size:27
Alignment explanation
Indices: 79403039--79403298 Score: 304
Period size: 27 Copynumber: 9.6 Consensus size: 27
79403029 TACAAGTCGA
** * **
79403039 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
79403066 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
79403093 AGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
79403120 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
**
79403147 GGGTATTTTGAAAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
79403174 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
79403201 GGGTATTTTGGTGATTTCATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
79403228 GGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
79403255 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
79403282 GGGTATTTTGATAATTT
1 GGGTATTTTGGTAATTT
79403299 CATAAACTAA
Statistics
Matches: 197, Mismatches: 36, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 197 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:79404263 original size:29 final size:30
Alignment explanation
Indices: 79404230--79404290 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
79404220 TACCGCTGCG
*
79404230 CACTCTGATCCTA-CATCACTATCACACTT
1 CACTCTGATACTATCATCACTATCACACTT
*
79404259 CACTCTGATACTATTATCACTATCACACTT
1 CACTCTGATACTATCATCACTATCACACTT
79404289 CA
1 CA
79404291 ACTAGAACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 12 0.41
30 17 0.59
ACGTcount: A:0.30, C:0.34, G:0.03, T:0.33
Consensus pattern (30 bp):
CACTCTGATACTATCATCACTATCACACTT
Found at i:79405500 original size:27 final size:26
Alignment explanation
Indices: 79405452--79405511 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
79405442 GCGAGACTGC
*
79405452 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
79405479 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
79405505 CAGATAT
1 CAGATAT
79405512 ATTTATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79406312 original size:27 final size:27
Alignment explanation
Indices: 79405846--79406305 Score: 587
Period size: 27 Copynumber: 17.0 Consensus size: 27
79405836 GGGGTAAAAT
* * *
79405846 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
79405873 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
79405900 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
79405927 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
79405954 GGTAATTCTACCCTACAGGCGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79405981 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79406008 GGTATTTCTACCCTACATGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGGTATTTC
* * *
79406036 GGTATTTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
79406063 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
79406090 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79406117 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79406144 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
79406171 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
79406198 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
79406225 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
79406252 GGTATTTCTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
79406279 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
79406306 AATAATTTGG
Statistics
Matches: 385, Mismatches: 47, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
27 359 0.93
28 26 0.07
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:79406644 original size:27 final size:27
Alignment explanation
Indices: 79406333--79406638 Score: 283
Period size: 27 Copynumber: 11.3 Consensus size: 27
79406323 AAGGTAAAAC
* * * * *
79406333 GGTAATTCTATAAATCAAGGGTACTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
** *
79406360 GGTAATTTTACAAGTC-GAGGGTATTTC
1 GGTAATTTTACAAACCAG-GGGTATTTT
** ** *
79406387 AATAATTTTACAAGTC-GAGGGTATTTC
1 GGTAATTTTACAAACCAG-GGGTATTTT
* * *
79406414 AGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
79406441 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* *
79406468 GATAATTTTACAAACCAGGGGTTTTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
79406495 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* *
79406522 GATAATTTTACAAACCAGAGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* ** * *
79406549 GGTGATTTTGTAAACCAAGGGTATTCT
1 GGTAATTTTACAAACCAGGGGTATTTT
* *
79406576 AGTAATTTTATAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
** * *
79406603 GGTAATTTTGTAAACCAAGTGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
79406630 GGTAATTTT
1 GGTAATTTT
79406639 GTAAACTAAA
Statistics
Matches: 236, Mismatches: 41, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
27 235 1.00
28 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACAAACCAGGGGTATTTT
Found at i:79407604 original size:30 final size:30
Alignment explanation
Indices: 79407570--79407631 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
79407560 TACTACTGCG
79407570 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
79407600 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
79407630 CA
1 CA
79407632 ACTAGAACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.37, G:0.03, T:0.32
Consensus pattern (30 bp):
CACTCTGATCCTACTATCACTATCACACTT
Found at i:79408833 original size:27 final size:26
Alignment explanation
Indices: 79408795--79408854 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
79408785 GCGAGGCTGC
*
79408795 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* *
79408822 CAGATATTGTGACTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
79408848 CAGATAT
1 CAGATAT
79408855 ATATATGTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79408941 original size:27 final size:26
Alignment explanation
Indices: 79408893--79408944 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
79408883 GCGAGGCTGT
*
79408893 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
79408919 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
79408945 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79408953 original size:67 final size:68
Alignment explanation
Indices: 79408822--79408963 Score: 196
Period size: 67 Copynumber: 2.1 Consensus size: 68
79408812 TCACCAGATA
* * *
79408822 CAGATATTGTGACTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACTAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG--A-ATATATGTGGCGAAGCCACCAGATTGCAGCGA
*
79408887 GGCTGT
63 GGCTGC
* *
79408893 CAGATATTGTGACGAAGTCACCAGAACAG-ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGC
1 CAGATATTGTGACGAAGCCACCAGAACAGAATATATGTGGCGAAGCCACCAGATTGCAGCGAGGC
79408957 TGC
66 TGC
79408960 CAGA
1 CAGA
79408964 ATGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 39 0.60
71 26 0.40
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (68 bp):
CAGATATTGTGACGAAGCCACCAGAACAGAATATATGTGGCGAAGCCACCAGATTGCAGCGAGGC
TGC
Found at i:79409249 original size:27 final size:27
Alignment explanation
Indices: 79409219--79409639 Score: 439
Period size: 27 Copynumber: 15.9 Consensus size: 27
79409209 GGTATCTCGA
*
79409219 TAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
**
79409246 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * * *
79409273 TATTTCTACCTTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
79409300 TAATTCTACCTTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
79409327 TAATTCTACCTTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
79409354 TATTTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
79409381 TATTTCTATCCTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
79409408 TATTTCTACCCTATAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
79409435 TAATTCTACCCTACAGGGGTATTTC-G
1 TAATTCTACCCTACAGGGGTATTTCAG
*
79409461 ATAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCAG
* *
79409489 TAAGTCTATCCTACAGGGG----T-A-
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
79409510 T--TTCTACCCTATAAGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
79409535 TATTTCTACCCTACAAGGGTATTTC-G
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
79409561 ATATTTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCAG
* * * * *
79409589 TATTTCTACCTTACAAGGGTATTGCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
79409616 TAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
79409640 TAATAATTTT
Statistics
Matches: 342, Mismatches: 40, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.04
21 1 0.00
23 2 0.01
24 1 0.00
25 1 0.00
26 1 0.00
27 322 0.94
28 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:79409318 original size:81 final size:81
Alignment explanation
Indices: 79409193--79409639 Score: 502
Period size: 81 Copynumber: 5.6 Consensus size: 81
79409183 TAAAATGGTA
* * *
79409193 ATTT-TACCCCACAAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCC
1 ATTTCTACCCTAC-AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
* *
79409257 TACAGGGGTATTTTGGT
65 TACAAGGGTATTTCGGT
* * * * *
79409274 ATTTCTACCTTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCTT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
* *
79409339 ATAGGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * * * *
79409355 ATTTCTACCCTACAGGGGTATTTC-AGTATTTCTATCCTACAAGGGTATTTCAGTATTTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
* *
79409419 TATAAGGGTATTTCAGT
65 TACAAGGGTATTTCGGT
* * * * *
79409436 AATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAAGTCTATCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
79409501 AC-A-GG------GGT
66 ACAAGGGTATTTCGGT
* * * * *
79409509 ATTTCTACCCTATAAGGGTATTTCAATATTTCTACCCTACAAGGGTATTTC-GATATTTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCC
79409573 TACAAGGGTATTTCGGT
65 TACAAGGGTATTTCGGT
* * *
79409590 ATTTCTACCTTACAAGGGTATTGCGGTAATTCTACCCTACAGGGGTATTT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
79409640 TAATAATTTT
Statistics
Matches: 306, Mismatches: 48, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
72 1 0.00
73 58 0.19
74 1 0.00
75 2 0.01
79 2 0.01
80 1 0.00
81 234 0.76
82 7 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGT
Found at i:79409515 original size:19 final size:19
Alignment explanation
Indices: 79409493--79409532 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
79409483 TTTCGGTAAG
* *
79409493 TCTATCCTACAGGGGTATT
1 TCTACCCTACAAGGGTATT
*
79409512 TCTACCCTATAAGGGTATT
1 TCTACCCTACAAGGGTATT
79409531 TC
1 TC
79409533 AATATTTCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (19 bp):
TCTACCCTACAAGGGTATT
Found at i:79409530 original size:100 final size:100
Alignment explanation
Indices: 79409407--79409590 Score: 323
Period size: 100 Copynumber: 1.8 Consensus size: 100
79409397 GGGTATTTCA
* *
79409407 GTATTTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
1 GTATTTCTACCCTATAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
*
79409472 CTACAGGGGTATTTCGGTAAGTCTATCCTACAGGG
66 CTACAAGGGTATTTCGGTAAGTCTATCCTACAGGG
* *
79409507 GTATTTCTACCCTATAAGGGTATTTCAATATTTCTACCCTACAAGGGTATTTCGATATTTCTACC
1 GTATTTCTACCCTATAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
79409572 CTACAAGGGTATTTCGGTA
66 CTACAAGGGTATTTCGGTA
79409591 TTTCTACCTT
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (100 bp):
GTATTTCTACCCTATAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
CTACAAGGGTATTTCGGTAAGTCTATCCTACAGGG
Found at i:79409609 original size:100 final size:100
Alignment explanation
Indices: 79409407--79409611 Score: 322
Period size: 100 Copynumber: 2.0 Consensus size: 100
79409397 GGGTATTTCA
* *
79409407 GTATTTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
1 GTATTTCTACCCTATAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
* *
79409472 CTACAGGGGTATTTCGGTAAGTCTATCCTACAGGG
66 CTACAAGGGTATTTCGGTAAGTCTATCCTACAAGG
* *
79409507 GTATTTCTACCCTATAAGGGTATTTCAATATTTCTACCCTACAAGGGTATTTCGATATTTCTACC
1 GTATTTCTACCCTATAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
**
79409572 CTACAAGGGTATTTCGGTATTTCTA-CCTTACAAGG
66 CTACAAGGGTATTTCGGTAAGTCTATCC-TACAAGG
79409607 GTATT
1 GTATT
79409612 GCGGTAATTC
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
99 2 0.02
100 94 0.98
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (100 bp):
GTATTTCTACCCTATAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
CTACAAGGGTATTTCGGTAAGTCTATCCTACAAGG
Found at i:79410006 original size:27 final size:27
Alignment explanation
Indices: 79409685--79409999 Score: 337
Period size: 27 Copynumber: 11.7 Consensus size: 27
79409675 GATAAATCAA
* **
79409685 GGGTACTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** **
79409711 AAGGTATTTTAATAATTTTACAAGTC-G
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * **
79409738 AGGGTATTTTAGTAATTTCACAAATTAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
** *
79409766 GGGTATTTCCGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
79409793 AGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
79409820 GGGTATTTTGGTAATTTTATAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
79409847 GGGTACTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
79409874 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
79409901 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
79409928 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
79409955 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
79409982 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
79410000 GTAAACTTAA
Statistics
Matches: 247, Mismatches: 40, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 246 1.00
28 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:79411674 original size:27 final size:26
Alignment explanation
Indices: 79411626--79411677 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
79411616 GCGAGGCTGC
*
79411626 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
79411652 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
79411678 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79411954 original size:27 final size:27
Alignment explanation
Indices: 79411922--79412389 Score: 500
Period size: 27 Copynumber: 17.3 Consensus size: 27
79411912 GGGGTAAAAT
* * *
79411922 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
79411949 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
79411976 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
79412003 GGT-ATTTCTACCTTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
79412030 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
* * * *
79412057 AGTAATTCTACCCTACAAGGGCATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
79412084 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
*
79412111 GGT-ATTTCTATCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
79412138 GGT-ATTTCTACCCTATAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* * *
79412165 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
79412192 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
79412219 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* * **
79412246 GGTAATTCTACCCTATAACGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
79412273 GAT-ATTTATACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
79412300 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
*
79412327 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
79412354 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
**
79412381 AATAATTTT
1 GGTAATTTT
79412390 GTAAATCGAG
Statistics
Matches: 387, Mismatches: 48, Indels: 12
0.87 0.11 0.03
Matches are distributed among these distances:
26 9 0.02
27 368 0.95
28 10 0.03
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:79412380 original size:81 final size:81
Alignment explanation
Indices: 79411926--79412387 Score: 606
Period size: 81 Copynumber: 5.7 Consensus size: 81
79411916 TAAAATGGTA
* * * *
79411926 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTT-TAGTAATTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCC
*
79411989 TACAGGGGTATTTCGGT
65 TACAAGGGTATTTCGGT
* *
79412006 ATTTCTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT-TAGTAATTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCC
*
79412070 TACAAGGGCATTTCGGT
65 TACAAGGGTATTTCGGT
* * * * *
79412087 ATTTCTACCCTACAGGGGTATTTCGGTATTTCTATCCTACAGGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
* *
79412152 ATAAGGGTATTTCGAT
66 ACAAGGGTATTTCGGT
* * * * *
79412168 AATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
*
79412233 ACAGGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * * * * * * *
79412249 AATTCTACCCTATAACGGTATTTCGATATTTATACCCTACAAGGGTATTTCGATATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
79412314 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* *
79412330 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCAATAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATT
79412388 TTGTAAATCG
Statistics
Matches: 336, Mismatches: 44, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
80 4 0.01
81 332 0.99
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
ACAAGGGTATTTCGGT
Found at i:79412402 original size:27 final size:27
Alignment explanation
Indices: 79412372--79412712 Score: 142
Period size: 27 Copynumber: 12.6 Consensus size: 27
79412362 TACCCTACAG
* *
79412372 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
*** * * *
79412399 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * *
79412426 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTATAAATCGA
*
79412453 GGGTATTTCAATAATTTTA-AAAGTCGA
1 GGGTATTTCAGTAATTTTATAAA-TCGA
* *
79412480 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTCAGTAATTTTATAAATCGA
** * *
79412506 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTCAGTAATTTTATAAATCGA
** * *
79412533 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTCAGTAATTTTATAAATCGA
* * * *
79412560 GGGGTATTT-TGATAATTTTACAAACCAA
1 -GGGTATTTCAG-TAATTTTATAAATCGA
** * *
79412588 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTCAGTAATTTTATAAATCGA
** * * *
79412614 GGGCTATTTTGGTGATTTTATAAACCAA
1 GGG-TATTTCAGTAATTTTATAAATCGA
* *
79412642 GGGTA-TTCTAGTAATTTTACAAA-CCA
1 GGGTATTTC-AGTAATTTTATAAATCGA
** * * *
79412668 GAGGTATTTTGGTAATTTTGTAAACCAA
1 G-GGTATTTCAGTAATTTTATAAATCGA
**
79412696 GGGTATTTTGGTAATTT
1 GGGTATTTCAGTAATTT
79412713 CGTAAACTAA
Statistics
Matches: 259, Mismatches: 40, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
26 18 0.07
27 225 0.87
28 16 0.06
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTATAAATCGA
Found at i:79412549 original size:81 final size:81
Alignment explanation
Indices: 79412342--79412712 Score: 315
Period size: 81 Copynumber: 4.6 Consensus size: 81
79412332 TTCTACCCTA
* ** *** ** **
79412342 CAAGGGTATTTCGGTAATTTTACCCTA-CAGGGGTATTTCAATAATTTTGTAAATCGAGGGTAAA
1 CAAGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATT
* * * * *
79412406 ACGGTAATTCTATAAAT
65 TCAGTAATTTTACAAAC
* ** ***
79412423 CAAGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTA-AAAGTCGAGGGTAT
1 CAAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAA-TCGAGGGTAT
* *
79412486 TTCAGTAATTTCACAAAT
64 TTCAGTAATTTTACAAAC
* * *
79412504 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCGA-GGGTATT
*
79412568 T-TGATAATTTTACAAAC
65 TCAG-TAATTTTACAAAC
* * * * *
79412585 CAAGGGTATTTTGGTAATTTTACAAACCAGGGCTATTTTGGTGATTTTATAAACCAAGGGTA-TT
1 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTT
79412649 CTAGTAATTTTACAAAC
66 C-AGTAATTTTACAAAC
** *
79412666 C-AGAGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTT
1 CAAG-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
79412713 CGTAAACTAA
Statistics
Matches: 242, Mismatches: 37, Indels: 22
0.80 0.12 0.07
Matches are distributed among these distances:
80 12 0.05
81 223 0.92
82 7 0.03
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTT
CAGTAATTTTACAAAC
Found at i:79412719 original size:27 final size:27
Alignment explanation
Indices: 79412408--79412712 Score: 310
Period size: 27 Copynumber: 11.3 Consensus size: 27
79412398 AGGGTAAAAC
* * * *
79412408 GGTAATTCTATAAATCAAGGGTACTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
** * *
79412435 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTT
** * * *
79412462 AATAATTTTA-AAAGTCGAGGGTATTTC
1 GGTAATTTTACAAA-CCAAGGGTATTTT
* * * *
79412489 AGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
79412516 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
79412543 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
79412570 GATAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
79412597 GGTAATTTTACAAACC-AGGGCTATTTT
1 GGTAATTTTACAAACCAAGGG-TATTTT
* * *
79412624 GGTGATTTTATAAACCAAGGGTATTCT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
79412651 AGTAATTTTACAAACC-AGAGGTATTTT
1 GGTAATTTTACAAACCAAG-GGTATTTT
**
79412678 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
79412705 GGTAATTT
1 GGTAATTT
79412713 CGTAAACTAA
Statistics
Matches: 240, Mismatches: 32, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.03
27 223 0.93
28 9 0.04
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAACCAAGGGTATTTT
Found at i:79419282 original size:38 final size:38
Alignment explanation
Indices: 79419240--79419360 Score: 161
Period size: 38 Copynumber: 3.1 Consensus size: 38
79419230 GCAAGCTTTA
* * *
79419240 TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCG
1 TGCTGGTATTATATCCGGCTTAAATCCCACAGGCTTAG
79419278 TGCTGGTATTATATCCGGCTTAAATCCCACAGGCTTAG
1 TGCTGGTATTATATCCGGCTTAAATCCCACAGGCTTAG
* * * *
79419316 TGCTGGTATTATATTCGAGCTTAAAGTCCCGCAGGTTTTG
1 TGCTGGTATTATATCCG-GCTTAAA-TCCCACAGGCTTAG
79419356 TGCTG
1 TGCTG
79419361 ATGACTGGAA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
38 51 0.69
39 7 0.09
40 16 0.22
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGCTTAAATCCCACAGGCTTAG
Found at i:79426324 original size:48 final size:48
Alignment explanation
Indices: 79426262--79427022 Score: 1324
Period size: 48 Copynumber: 15.9 Consensus size: 48
79426252 TATATATGTG
*
79426262 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
79426310 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATTAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
**
79426358 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATAAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79426406 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79426454 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79426502 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79426550 TGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79426598 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
79426646 TGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
79426694 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATCTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79426742 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79426790 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79426838 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
79426886 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAAGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79426934 TGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
79426982 TGTGGTAAAACCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
79427023 GTGTGTATAT
Statistics
Matches: 682, Mismatches: 31, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 682 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:79427218 original size:37 final size:37
Alignment explanation
Indices: 79427163--79427265 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
79427153 GGAAATATAT
79427163 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
79427200 TCCGCGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
79427237 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
79427266 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:79429679 original size:20 final size:20
Alignment explanation
Indices: 79429651--79429692 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
79429641 TACCAACTTG
*
79429651 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
79429671 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
79429691 CA
1 CA
79429693 GCTTAAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.31, G:0.02, T:0.31
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:79429888 original size:42 final size:42
Alignment explanation
Indices: 79429780--79429901 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
79429770 TACCATACCA
* * * * *
79429780 ATGCCATATCCTAGATATGGTCTCACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* *
79429822 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
79429865 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCA
79429902 ACTAACCCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 32 0.47
43 35 0.51
44 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:79434701 original size:17 final size:17
Alignment explanation
Indices: 79434679--79434715 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
79434669 AAGAATCCAT
*
79434679 CAAAACATAGACTTTGC
1 CAAAACATAGACTTCGC
79434696 CAAAACATAGACTTCGC
1 CAAAACATAGACTTCGC
79434713 CAA
1 CAA
79434716 TCGGCACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.43, C:0.27, G:0.11, T:0.19
Consensus pattern (17 bp):
CAAAACATAGACTTCGC
Found at i:79444851 original size:47 final size:44
Alignment explanation
Indices: 79444744--79444910 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 44
79444734 TATGCATGCT
*
79444744 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
1 GATGCATGTCCCAGACACGTCTTACACTAGCACAACTCTTAGCC
* * *
79444788 GATGCATGTCCCAGACACGTCTTACACTGGCTATC-TCTGTTGAGGCC
1 GATGCATGTCCCAGACACGTCTTACACTAGC-A-CAACTCTT-A-GCC
* * *
79444835 GATGCATGTCCTAGACACGTCTTACTCTAGCACTCATCTCTGT-GCC
1 GATGCATGTCCCAGACACGTCTTACACTAGCA--CAACTCT-TAGCC
* *
79444881 GATGTCGTGTCCCAGACATGGTCTTACACT
1 GATG-CATGTCCCAGACA-CGTCTTACACT
79444911 GGCTCTCATA
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
44 29 0.28
45 5 0.05
46 10 0.10
47 44 0.43
48 13 0.13
49 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACACGTCTTACACTAGCACAACTCTTAGCC
Found at i:79444938 original size:94 final size:90
Alignment explanation
Indices: 79444689--79444958 Score: 303
Period size: 94 Copynumber: 2.9 Consensus size: 90
79444679 ATGGGATGAA
* *
79444689 TTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCAT-GCTGATGCATGT
1 TTGCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATG--TGGCCGATGCATGT
79444753 CCCAGACATGTCTTACACTAGCACAACTC
62 CCCAGACATGTCTTACACTAGCACAACTC
* ** *
79444782 TTAGCCGATGCATGTCCCAGACA-CGTCTTACACTGGCTATCTC-TGTTGAGGCCGATGCATGTC
1 TT-GCCGATGCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAATGTGGCCGATGCATGTC
* * * *
79444845 CTAGACACGTCTTACTCTAGCACTCATCTC
63 CCAGACATGTCTTACACTAGCA--CAACTC
* * *
79444875 TGTGCCGATGTCGTGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGAATGTCC
1 T-TGCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCC
79444940 CAGACATGTCTTACACTAG
64 CAGACATGTCTTACACTAG
79444959 TGCCCAAATC
Statistics
Matches: 147, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
91 31 0.21
92 14 0.10
93 33 0.22
94 56 0.38
95 13 0.09
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (90 bp):
TTGCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCACAACTC
Found at i:79445925 original size:13 final size:13
Alignment explanation
Indices: 79445907--79445938 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
79445897 TGAAAACATT
79445907 AAAATTAACTCAC
1 AAAATTAACTCAC
79445920 AAAATTAACTCAC
1 AAAATTAACTCAC
79445933 AAAATT
1 AAAATT
79445939 TCTCATGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (13 bp):
AAAATTAACTCAC
Found at i:79447600 original size:33 final size:33
Alignment explanation
Indices: 79447558--79447688 Score: 107
Period size: 33 Copynumber: 4.2 Consensus size: 33
79447548 TGCACATTTT
79447558 CTTTTCAAATGGTATACACAAAGTATACCTTTC
1 CTTTTCAAATGGTATACACAAAGTATACCTTTC
* *
79447591 CTTTTCAAATGG--TACACGAAGT-T---TGT-
1 CTTTTCAAATGGTATACACAAAGTATACCTTTC
* * * * * **
79447617 CGTTTCAAGT-GTACACACAAAGTGTACATAGC
1 CTTTTCAAATGGTATACACAAAGTATACCTTTC
**
79447649 CTTTTCATGTGGTATACACAAAGTATACCTTTC
1 CTTTTCAAATGGTATACACAAAGTATACCTTTC
79447682 CTTTTCA
1 CTTTTCA
79447689 CATTCGATAG
Statistics
Matches: 75, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
25 1 0.01
26 8 0.11
27 10 0.13
28 1 0.01
30 1 0.01
31 10 0.13
32 8 0.11
33 36 0.48
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (33 bp):
CTTTTCAAATGGTATACACAAAGTATACCTTTC
Found at i:79448397 original size:20 final size:22
Alignment explanation
Indices: 79448357--79448397 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
79448347 TGTAAAAGTG
*
79448357 ATTTCTCTATCAATAACCTTTT
1 ATTTCTCTATCAATAAACTTTT
79448379 ATTT-TCTATC-ATAAACTTT
1 ATTTCTCTATCAATAAACTTT
79448398 AAATTTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 6 0.33
22 4 0.22
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTTCTCTATCAATAAACTTTT
Found at i:79453017 original size:47 final size:45
Alignment explanation
Indices: 79452946--79453208 Score: 231
Period size: 47 Copynumber: 5.6 Consensus size: 45
79452936 GTAAGGTGTT
* *
79452946 GATGCCATGTCCTAGACATTGTCTTACACTGGCTCACATCTCAAGTC
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTCACATCTCAAGCC
* *
79452993 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTC-AAGCC
* * * *
79453041 GATGTATGTCCTAGACATGTCTTACACTGGCTTACGTCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA-GCC
* * * * * * *
79453087 GATGCATTTCCCAGCCATGTCTTACACTAGCTCTCTTCTTAATGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA-GCC
* * * ***
79453133 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCACAT-CTCAAGCC
79453181 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
79453209 AGCCAACAAT
Statistics
Matches: 177, Mismatches: 31, Indels: 17
0.79 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 71 0.40
47 75 0.42
48 29 0.16
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGCC
Found at i:79467251 original size:46 final size:46
Alignment explanation
Indices: 79467079--79467251 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
79467069 AACCCGCCCC
* * *
79467079 TAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
79467125 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * * *
79467173 TCA-CGAACTCGAACCCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
79467218 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
79467252 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:79467709 original size:30 final size:30
Alignment explanation
Indices: 79467675--79467734 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
79467665 ATTTAATACG
79467675 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
79467705 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
79467735 GGCTCGGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:79484956 original size:47 final size:49
Alignment explanation
Indices: 79484882--79485011 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 49
79484872 GTATAATACC
* * *
79484882 GATGTCATGTCCCAAACATGGTCTTACACTGGCTCATC-CAT-TAAGT-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCACATGTAAGTCT
* **
79484929 GATGCCATGTCCGAGACATGGTCTTACACTGACTCTCACATGTCCGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATGTAAGT-CT
*
79484979 GATGCCATGTCCCAGACGTGGTCTTACACTGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC
79485012 ACATTTTGTA
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
46 2 0.03
47 34 0.48
48 3 0.04
50 32 0.45
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATGTAAGTCT
Found at i:79485096 original size:45 final size:47
Alignment explanation
Indices: 79484880--79485154 Score: 158
Period size: 45 Copynumber: 5.9 Consensus size: 47
79484870 AGGTATAATA
* *
79484880 CCGATGTCATGTCCCAAACATGGTCTTACACTGGCTCATCCAT-T-AA-G
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTC-T-CATCTCAAGG
** * * * *
79484927 TTGATGCCATGTCCGAGACATGGTCTTACACTGACTCTCACATGTC-CGTG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT--CATCTCAAG-G
* * * * * **
79484977 CTGATGCCATGTCCCAGACGTGGTCTTACACT-G-ACACATTTTGTA-G
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCA-TCTCAAGG
* * * * *
79485023 TCAATG-CATGTCTCAAACATGTCTTACACTGGCT-TACATCTCGAGG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCAAGG
* * * *
79485069 GCGATG-CATGTCCTAGA-ATGTCTTACACTAGCTCTCATCTCAATG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGG
79485114 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCAT
79485155 AACGTGGCCG
Statistics
Matches: 174, Mismatches: 39, Indels: 29
0.72 0.16 0.12
Matches are distributed among these distances:
44 10 0.06
45 43 0.25
46 33 0.19
47 38 0.22
48 20 0.11
50 30 0.17
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGG
Found at i:79496664 original size:12 final size:12
Alignment explanation
Indices: 79496647--79496674 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
79496637 CGGCCTAACA
79496647 CATGAAATCGCC
1 CATGAAATCGCC
79496659 CATGAAATCGCC
1 CATGAAATCGCC
79496671 CATG
1 CATG
79496675 GTGGCCTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.18
Consensus pattern (12 bp):
CATGAAATCGCC
Found at i:79503138 original size:36 final size:36
Alignment explanation
Indices: 79503098--79503170 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
79503088 GATAAAGTAT
*
79503098 ATGACTACGAGTTCCTACGCTATGATGATAAATTGA
1 ATGACTACGAGATCCTACGCTATGATGATAAATTGA
79503134 ATGACTACGAGATCCTACGCTATGATGATAAATTGA
1 ATGACTACGAGATCCTACGCTATGATGATAAATTGA
79503170 A
1 A
79503171 CTCGTATTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (36 bp):
ATGACTACGAGATCCTACGCTATGATGATAAATTGA
Found at i:79509716 original size:47 final size:49
Alignment explanation
Indices: 79509647--79509776 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 49
79509637 GTATAATGTC
* *
79509647 GATGCCATGTACCAGACGTGGTCTTACACTGGCTCATC-CAT-TAAGT-T
1 GATGCCATGTCCCAGACGTGGTCTTACACTGACTC-TCACATGTAAGTAT
* * **
79509694 GATGCCATGTCCCAGACATGGTCTTACCCTGACTCTCACATGTCCGTACT
1 GATGCCATGTCCCAGACGTGGTCTTACACTGACTCTCACATGTAAGTA-T
*
79509744 GATGCCATGTCCTAGACGTGGTCTTACACTGAC
1 GATGCCATGTCCCAGACGTGGTCTTACACTGAC
79509777 ACATCTTGTA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 2 0.03
47 34 0.49
48 3 0.04
50 31 0.44
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACGTGGTCTTACACTGACTCTCACATGTAAGTAT
Found at i:79509909 original size:94 final size:92
Alignment explanation
Indices: 79509745--79509914 Score: 225
Period size: 94 Copynumber: 1.8 Consensus size: 92
79509735 GTCCGTACTG
* * * *
79509745 ATGCCATGTCCTAGACGTGGTCTTACACTGACACATCTTGTAGCCGATGCATGTCCTAGACATGT
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGCCGATGCATATCCCAGACATGT
79509810 ATTACACTAGCTCTCGTCTCAATGCCA
66 ATTACACTAGCTCTCGTCTCAATGCCA
* * *
79509837 ATGCCATGTCCCAGACATGGTCTTACACTGCCTC-TCATAATGTGGCCGATGCATATCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACATC-T--TGTAGCCGATGCATATCCCAGACA
* *
79509901 TTTCTTACACTAGC
63 TGTATTACACTAGC
79509915 ACACAAATAA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
91 2 0.03
92 31 0.47
94 33 0.50
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (92 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGCCGATGCATATCCCAGACATGT
ATTACACTAGCTCTCGTCTCAATGCCA
Found at i:79517943 original size:28 final size:29
Alignment explanation
Indices: 79517912--79517975 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
79517902 ATATAAATCG
* *
79517912 ATTTTTTG-AGCCTAGGGGTAAAATGGTC
1 ATTTTGTGAAGCCTAGGGGCAAAATGGTC
*
79517940 ATTTTGTGAAAGTCTAGGGGCAAAATGGTC
1 ATTTTGTG-AAGCCTAGGGGCAAAATGGTC
*
79517970 GTTTTG
1 ATTTTG
79517976 CCAAAAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 7 0.23
30 23 0.77
ACGTcount: A:0.25, C:0.09, G:0.30, T:0.36
Consensus pattern (29 bp):
ATTTTGTGAAGCCTAGGGGCAAAATGGTC
Found at i:79518416 original size:48 final size:47
Alignment explanation
Indices: 79518311--79518663 Score: 197
Period size: 48 Copynumber: 7.5 Consensus size: 47
79518301 TATGTGTGCT
* * * *
79518311 AGTGTAAGACATGTTTGGGACATGCATCGGCCAC-A-TTGTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT-AAAGCC
* *
79518357 AGGGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AAGCC
* * * * ** * * *
79518405 AGTGTAAGACATTTCTAGGACATGCATTGGCATTAAGACG-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAAGCC
* * * *
79518451 AGTGTAAAACATGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AAGCC
* * * * *
79518499 AGTGTAAGACCTGTCTGGGACATGGCATCAG-CTTGTTG-TGT---GTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG-AGATGTAAAGCC
* * * * * *
79518543 AGTGTAAGACTTGTCTGGGACACGACATTGGCCTCGATATATGAAAGTC
1 AGTGTAAGACATGTCTGGGACATG-CATCGGCCTCGAGATGT-AAAGCC
* * * * * * *
79518592 AGTGCAAGACCTGTCTAGGACATGGCATCGACTTTGATG-TGCT--AGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-GATG-TAAAGCC
79518639 AGTGTAAGACTATGTCTGGGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
79518664 GCGTCGGCAT
Statistics
Matches: 231, Mismatches: 58, Indels: 35
0.71 0.18 0.11
Matches are distributed among these distances:
43 1 0.00
44 26 0.11
45 5 0.02
46 63 0.27
47 16 0.07
48 80 0.35
49 38 0.16
50 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAAGCC
Found at i:79518606 original size:93 final size:95
Alignment explanation
Indices: 79518360--79518661 Score: 273
Period size: 94 Copynumber: 3.2 Consensus size: 95
79518350 GAGAGCCAGG
* * * * * * * *
79518360 GTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTACAAGCCAGTGTAAGACATTTCTAGGA
1 GTAAGACTTGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGCAAGACCTGTCTAGGA
* * * * *
79518425 CAT-GCATTGGCATTAAGACGAG--AGCTAGT
66 CATGGCATCGAC-TT-TGATGTGCTAGCTAGT
* * * *
79518454 GTAAAACATGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTGGGA
1 GTAAGACTTGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGCAAGACCTGTCTAGGA
*
79518519 CATGGCATC-AGC-TTGTTGTG-T-G-TCAGT
66 CATGGCATCGA-CTTTGATGTGCTAGCT-AGT
* * *
79518546 GTAAGACTTGTCTGGGACACGACATTGGCCTCGATATATGA-AAG-TCAGTGCAAGACCTGTCTA
1 GTAAGACTTGTCTGGGACAAG-CATCGGCCTCGAGATAT-ACAAGCT-AGTGCAAGACCTGTCTA
79518609 GGACATGGCATCGACTTTGATGTGCTAGCTAGT
63 GGACATGGCATCGACTTTGATGTGCTAGCTAGT
79518642 GTAAGACTATGTCTGGGACA
1 GTAAGACT-TGTCTGGGACA
79518662 TGGCGTCGGC
Statistics
Matches: 173, Mismatches: 22, Indels: 23
0.79 0.10 0.11
Matches are distributed among these distances:
91 1 0.01
92 26 0.15
93 47 0.27
94 69 0.40
95 6 0.03
96 12 0.07
97 12 0.07
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (95 bp):
GTAAGACTTGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGCAAGACCTGTCTAGGA
CATGGCATCGACTTTGATGTGCTAGCTAGT
Found at i:79521094 original size:37 final size:37
Alignment explanation
Indices: 79521053--79521139 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
79521043 GTAGTTAGCG
*
79521053 GGTCTCACCTGGACAAAATCTCCACACGTAGTCATCA
1 GGTCTCACCCGGACAAAATCTCCACACGTAGTCATCA
* *
79521090 GGTCTTACCCGGACATAATCTCCACACGTAGTCATC-
1 GGTCTCACCCGGACAAAATCTCCACACGTAGTCATCA
*
79521126 GAGTCTTACCCGGA
1 G-GTCTCACCCGGA
79521140 ATATATTTCC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
36 1 0.02
37 45 0.98
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
GGTCTCACCCGGACAAAATCTCCACACGTAGTCATCA
Found at i:79521338 original size:48 final size:48
Alignment explanation
Indices: 79521280--79521569 Score: 501
Period size: 48 Copynumber: 6.0 Consensus size: 48
79521270 ATATACACAC
* * *
79521280 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
79521328 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
79521376 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
79521424 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
79521472 ATCTCATATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACAT
*
79521520 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
79521568 AT
1 AT
79521570 TTGTCTTGTA
Statistics
Matches: 232, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 1 0.00
48 230 0.99
49 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:79524093 original size:14 final size:14
Alignment explanation
Indices: 79524074--79524109 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
79524064 TCCGACTAGG
79524074 GTCACATTAGGGGT
1 GTCACATTAGGGGT
*
79524088 GTCACATAAGGGGT
1 GTCACATTAGGGGT
*
79524102 GTTACATT
1 GTCACATT
79524110 TAGTGGTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.31
Consensus pattern (14 bp):
GTCACATTAGGGGT
Found at i:79527148 original size:18 final size:18
Alignment explanation
Indices: 79527125--79527160 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
79527115 GAGATGGTTG
79527125 GAGTTGATAAAAGACTAC
1 GAGTTGATAAAAGACTAC
*
79527143 GAGTTGATAATAGACTAC
1 GAGTTGATAAAAGACTAC
79527161 CTCCTAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (18 bp):
GAGTTGATAAAAGACTAC
Found at i:79528972 original size:28 final size:28
Alignment explanation
Indices: 79528887--79529066 Score: 240
Period size: 27 Copynumber: 6.5 Consensus size: 28
79528877 CATGAGATTG
* * *
79528887 GCACTAAGTGTGCGGGTTTAAATTGTGTA
1 GCACTAAGTGTGCGAGTTT-GATTATGTA
* *
79528916 GCACTAAGTGTGCGA-ATTGAATATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
79528943 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
79528971 GCACTAAGTGTGCGAG-TTGACTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
79528998 GCACTAAGTGTGCGAGTATGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
79529026 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
79529053 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
79529067 GACTTAATAA
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
27 70 0.51
28 53 0.39
29 14 0.10
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATGTA
Found at i:79528980 original size:55 final size:55
Alignment explanation
Indices: 79528887--79529066 Score: 261
Period size: 55 Copynumber: 3.3 Consensus size: 55
79528877 CATGAGATTG
* * * *
79528887 GCACTAAGTGTGCGGGTTTAAATTGTGTAGCACTAAGTGTGCGAATTGAATATGTA
1 GCACTAAGTGTGCGAGTTT-GATTATGTAGCACTAAGTGTGCGAGTTGAATATGTA
* *
79528943 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGAATATGTA
* * *
79528998 GCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGAATATGTA
*
79529053 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
79529067 GACTTAATAA
Statistics
Matches: 113, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 95 0.84
56 18 0.16
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGAATATGTA
Found at i:79536349 original size:28 final size:27
Alignment explanation
Indices: 79536292--79536443 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
79536282 TAAATTGTGC
* *
79536292 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
79536319 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
79536347 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
79536374 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
79536402 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
79536429 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
79536444 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:79536357 original size:55 final size:55
Alignment explanation
Indices: 79536292--79536443 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
79536282 TAAATTGTGC
* *
79536292 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
79536347 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
79536402 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
79536444 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:79538901 original size:15 final size:15
Alignment explanation
Indices: 79538881--79538909 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
79538871 TAATTGCATC
79538881 CTCATATTGATAATA
1 CTCATATTGATAATA
79538896 CTCATATTGATAAT
1 CTCATATTGATAAT
79538910 GATATAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (15 bp):
CTCATATTGATAATA
Found at i:79542494 original size:15 final size:15
Alignment explanation
Indices: 79542474--79542505 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
79542464 TCGATTGATC
*
79542474 TTCCAATATTCTAGT
1 TTCCAAAATTCTAGT
79542489 TTCCAAAATTCTAGT
1 TTCCAAAATTCTAGT
79542504 TT
1 TT
79542506 TTTTACATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (15 bp):
TTCCAAAATTCTAGT
Found at i:79543177 original size:20 final size:21
Alignment explanation
Indices: 79543154--79543194 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
79543144 ATAAGCATGT
79543154 ATTTTG-ATGTTTGATAATAG
1 ATTTTGAATGTTTGATAATAG
*
79543174 ATTTTGAATGTTTGATGATAG
1 ATTTTGAATGTTTGATAATAG
79543195 TTATACAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGTTTGATAATAG
Found at i:79543866 original size:54 final size:54
Alignment explanation
Indices: 79543770--79543872 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
79543760 TAGCTTCGGC
* * * * *
79543770 TATATATGTATTGGCACTTAGTGTGCATAATTGAAATGGCTTCAGCTATATATA
1 TATATATATATTGGCACATAGTGTGCAAAATAGAAATAGCTTCAGCTATATATA
*
79543824 TATATATATATTGGCACATAGTGTG-AGAAATAGATATAGCTTCAGCTAT
1 TATATATATATTGGCACATAGTGTGCA-AAATAGAAATAGCTTCAGCTAT
79543873 TTATTTGGCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 1 0.02
54 41 0.98
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (54 bp):
TATATATATATTGGCACATAGTGTGCAAAATAGAAATAGCTTCAGCTATATATA
Found at i:79547270 original size:29 final size:29
Alignment explanation
Indices: 79547202--79547270 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 29
79547192 CATGTCTCGG
* **
79547202 AGCCAAATCAACCAACATTCATGGCCTGA
1 AGCCAAATCAGCCAACATTCATGGCCCAA
*
79547231 AGCTAAATCAGCCAACATTCATGGCCCAA
1 AGCCAAATCAGCCAACATTCATGGCCCAA
79547260 AGCCAAATCAG
1 AGCCAAATCAG
79547271 TATAACTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.39, C:0.30, G:0.14, T:0.16
Consensus pattern (29 bp):
AGCCAAATCAGCCAACATTCATGGCCCAA
Found at i:79557626 original size:11 final size:9
Alignment explanation
Indices: 79557588--79557629 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
79557578 CTCTGTATTC
79557588 TCTCTCAA-
1 TCTCTCAAT
*
79557596 -CTCTCAAC
1 TCTCTCAAT
79557604 TCTCTCAAT
1 TCTCTCAAT
79557613 TCTCTCAAT
1 TCTCTCAAT
*
79557622 TTTCTCAA
1 TCTCTCAA
79557630 GTTTTGTTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
7 7 0.23
9 23 0.77
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (9 bp):
TCTCTCAAT
Found at i:79566117 original size:4 final size:4
Alignment explanation
Indices: 79566108--79566137 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
79566098 ATAGAAACAC
*
79566108 GAAA GAAA GAAA GAAA GAAA AAAA GAAA GA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GA
79566138 GACGAAGTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:79572340 original size:56 final size:56
Alignment explanation
Indices: 79572278--79572409 Score: 219
Period size: 56 Copynumber: 2.4 Consensus size: 56
79572268 ACCATGGCAT
*
79572278 CGATATATATGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* **
79572334 CGATATATGTGTATGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
*
79572390 CGTTATATATGTGCGAGTAA
1 CGATATATATGTGCGAGTAA
79572410 AACCCTGTCT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (56 bp):
CGATATATATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:79573482 original size:16 final size:17
Alignment explanation
Indices: 79573451--79573485 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
79573441 AGCTATAAGA
*
79573451 TGAATTTGCTTTATTTG
1 TGAATTTGCGTTATTTG
79573468 TGAATTTG-GTTATTTG
1 TGAATTTGCGTTATTTG
79573484 TG
1 TG
79573486 TGTGTTTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.17, C:0.03, G:0.23, T:0.57
Consensus pattern (17 bp):
TGAATTTGCGTTATTTG
Found at i:79584044 original size:48 final size:48
Alignment explanation
Indices: 79583985--79584153 Score: 209
Period size: 48 Copynumber: 3.6 Consensus size: 48
79583975 TAATATGTGT
* *
79583985 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAGAGATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGAGATACAA
* * * *
79584033 GCCAGTGTAAGACATGTTTGGGACATGCATCGACATTGAGACG--A-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGA-GATACAA
* * *
79584079 GCTAGTGTAAGACATGTCCGGGACATACATCGACCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGAGATACAA
* *
79584127 GCTAGTGTAAAACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
79584154 GCGTTAGCTT
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 37 0.36
47 2 0.02
48 62 0.61
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGAGATACAA
Found at i:79584252 original size:49 final size:49
Alignment explanation
Indices: 79584173--79584266 Score: 111
Period size: 49 Copynumber: 1.9 Consensus size: 49
79584163 TATTGTGTGT
* * *
79584173 CAGTGTAAGACTTGTTTGGGACATTGCATCGGCCCCGATAGATGAGAGC
1 CAGTGTAAGACTTATTTGGGACATCGCATCGACCCCGATAGATGAGAGC
* *
79584222 CAGTGTAAGAGC-TATTTGGGACA-CGACATCGACCTCGATATATGA
1 CAGTGTAAGA-CTTATTTGGGACATCG-CATCGACCCCGATAGATGA
79584267 AAGTGGGTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 1 0.03
49 36 0.95
50 1 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACTTATTTGGGACATCGCATCGACCCCGATAGATGAGAGC
Found at i:79593597 original size:21 final size:21
Alignment explanation
Indices: 79593559--79593603 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
79593549 CTGTTAAACT
79593559 GAATGTCGATAATGGCAATATA
1 GAATGTCGATAATGGCAATA-A
79593581 GAATGATCG-TAA-GGCAATAA
1 GAATG-TCGATAATGGCAATAA
79593601 GAA
1 GAA
79593604 AGAAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.18
21 7 0.32
22 8 0.36
23 3 0.14
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.22
Consensus pattern (21 bp):
GAATGTCGATAATGGCAATAA
Found at i:79595676 original size:19 final size:20
Alignment explanation
Indices: 79595652--79595691 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
79595642 ATGATCATGT
79595652 CAATGTACATTTTGT-AAAA
1 CAATGTACATTTTGTGAAAA
*
79595671 CAATGTAGATTTTGTGAAAA
1 CAATGTACATTTTGTGAAAA
79595691 C
1 C
79595692 GGTCCTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (20 bp):
CAATGTACATTTTGTGAAAA
Found at i:79600839 original size:55 final size:55
Alignment explanation
Indices: 79600778--79600907 Score: 149
Period size: 55 Copynumber: 2.4 Consensus size: 55
79600768 CCCATGTTTA
*
79600778 TTTAACAGGTTCGACCACGGGTGTTCCACACGGGCGTGTCG-A-ACGCCTGTGTTGT
1 TTTAACAGGTTCGACCACGGGTCTTCCACACGGGCGTGTCGCATAC-CC-GTGTTGT
* * *
79600833 TTTAACAGGTTC-ACCCATGGTTCTTCCACACGGGCGTGTCGCATACTCGTGTTGT
1 TTTAACAGGTTCGA-CCACGGGTCTTCCACACGGGCGTGTCGCATACCCGTGTTGT
** *
79600888 TTTGGCAGGCTCGACCACGG
1 TTTAACAGGTTCGACCACGG
79600908 CTATATCGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
54 1 0.02
55 57 0.90
56 3 0.05
57 2 0.03
ACGTcount: A:0.16, C:0.27, G:0.28, T:0.28
Consensus pattern (55 bp):
TTTAACAGGTTCGACCACGGGTCTTCCACACGGGCGTGTCGCATACCCGTGTTGT
Found at i:79618622 original size:20 final size:20
Alignment explanation
Indices: 79618597--79618635 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
79618587 TATTAAAAAT
*
79618597 TCATGCGAAATGCCTTACCA
1 TCATGCAAAATGCCTTACCA
79618617 TCATGCAAAATGCCTTACC
1 TCATGCAAAATGCCTTACC
79618636 TCTTTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.26
Consensus pattern (20 bp):
TCATGCAAAATGCCTTACCA
Found at i:79624063 original size:48 final size:47
Alignment explanation
Indices: 79624005--79624099 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 47
79623995 AATGATGCCT
* ** * *
79624005 AAATTTGTTAAATTTGTTTATATAGATCAAGAAAAGCAGTATTCGAAA
1 AAATTAGTTAAATTTGACTATATAGAT-AAAAAAAGCAATATTCGAAA
*
79624053 AAATTAGTTAAATTTGACTATATAGATAAAAAAAGCAATATTTGAAA
1 AAATTAGTTAAATTTGACTATATAGATAAAAAAAGCAATATTCGAAA
79624100 TTAAATCGGG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
47 17 0.41
48 24 0.59
ACGTcount: A:0.48, C:0.05, G:0.13, T:0.34
Consensus pattern (47 bp):
AAATTAGTTAAATTTGACTATATAGATAAAAAAAGCAATATTCGAAA
Found at i:79631663 original size:17 final size:17
Alignment explanation
Indices: 79631638--79631684 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
79631628 GGCCAAATTT
*
79631638 GGGCTTGTGGGCCACAC
1 GGGCATGTGGGCCACAC
79631655 GGGCATGTGGGCCACAC
1 GGGCATGTGGGCCACAC
* *
79631672 AGGCATGTAGGCC
1 GGGCATGTGGGCC
79631685 CACATTGGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.17, C:0.28, G:0.40, T:0.15
Consensus pattern (17 bp):
GGGCATGTGGGCCACAC
Found at i:79631848 original size:27 final size:27
Alignment explanation
Indices: 79631810--79632017 Score: 308
Period size: 27 Copynumber: 7.7 Consensus size: 27
79631800 CCCAAATTAA
79631810 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
79631837 TAAAATGACTGTTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
79631864 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
79631891 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
79631918 TAAAATGACTATTTTTCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
79631945 TAAAATGACTATTTTGCTCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * * *
79631972 TAAAATGATTGTTTTACCTTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
79631999 TAAGATGATTGTTTTGCCC
1 TAAAATGACTGTTTTGCCC
79632018 CTATATGTTG
Statistics
Matches: 164, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 164 1.00
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:79637978 original size:25 final size:25
Alignment explanation
Indices: 79637925--79637979 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
79637915 GGACTCGGCA
* * * *
79637925 CAGCTCGTATGAGCTTACCGATTTG
1 CAGCTCGTAAGAGCTTAACGATATC
*
79637950 CAGCTCGTAAGAGCTTAATGATATC
1 CAGCTCGTAAGAGCTTAACGATATC
79637975 CAGCT
1 CAGCT
79637980 TGGTGGAGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (25 bp):
CAGCTCGTAAGAGCTTAACGATATC
Found at i:79639507 original size:37 final size:37
Alignment explanation
Indices: 79639452--79639525 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
79639442 TGAATTATGG
*
79639452 ATCTATTTGAGTAATGTGAATAATAAATAAGTTAAAT
1 ATCTATTTGAGCAATGTGAATAATAAATAAGTTAAAT
*
79639489 ATCTGTTTGAGCAATGTGAATAATAAATAAGTTAAAT
1 ATCTATTTGAGCAATGTGAATAATAAATAAGTTAAAT
79639526 TTGGCATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.04, G:0.15, T:0.36
Consensus pattern (37 bp):
ATCTATTTGAGCAATGTGAATAATAAATAAGTTAAAT
Found at i:79641415 original size:20 final size:20
Alignment explanation
Indices: 79641390--79641441 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
79641380 TGGGTAAGGG
79641390 ACACGGGCGTGTCCCAATGC
1 ACACGGGCGTGTCCCAATGC
79641410 ACACGGGCGTGTCCCAATGC
1 ACACGGGCGTGTCCCAATGC
79641430 ACACGGGCGTGT
1 ACACGGGCGTGT
79641442 GCATTACCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAATGC
Found at i:79642431 original size:31 final size:30
Alignment explanation
Indices: 79642393--79642459 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 30
79642383 ACAGTTAGTG
*
79642393 AATATGAGAGAGAATTCATTAGACTCAGCAA
1 AATATGAGAGAGAATTCATCAGACTCAGC-A
**
79642424 AATATGAGAGAGAATTTGTCAGACTCAGCA
1 AATATGAGAGAGAATTCATCAGACTCAGCA
79642454 AATATG
1 AATATG
79642460 CTCGGGAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 7 0.21
31 26 0.79
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (30 bp):
AATATGAGAGAGAATTCATCAGACTCAGCA
Found at i:79652954 original size:55 final size:53
Alignment explanation
Indices: 79652829--79653017 Score: 227
Period size: 55 Copynumber: 3.5 Consensus size: 53
79652819 AACTTACCAT
* * *
79652829 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * * *
79652882 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATTAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * *
79652937 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
79652991 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
79653018 ATATCCTTAT
Statistics
Matches: 115, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 34 0.30
55 43 0.37
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:79653120 original size:95 final size:90
Alignment explanation
Indices: 79652999--79653213 Score: 216
Period size: 95 Copynumber: 2.3 Consensus size: 90
79652989 AATGCCATGC
* * *
79652999 CTTGGCATGGTCTTACATGATATCCTTATC-TTACCAAATGCCATGTTCCAAACATGGTCTTACA
1 CTTGACATGGTCTTACATG-GATCCTTATCAATACC-AATGCCATG-TCCAAACATGGTCTTACA
* *
79653063 TGGTATCCTTGTCTTAGTGCCAATGCCACAT
63 TGGGATCCTTGCCTTA---CCAATGCCACAT
** * * ***
79653094 CTTGATGTGGTCTTACATGGAGTCCTTAATCAATGCCAATGCCTTGTCTTGACATGGTCTTACAT
1 CTTGACATGGTCTTACATGGA-TCCTT-ATCAATACCAATGCCATGTCCAAACATGGTCTTACAT
**
79653159 GGGATCCTTGCCTTACCAATGCCATGT
64 GGGATCCTTGCCTTACCAATGCCACAT
79653186 CTTGACATGGTCTTACATGGTATCCTTA
1 CTTGACATGGTCTTACATGG-ATCCTTA
79653214 ATAGTCAATT
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
91 1 0.01
92 33 0.33
93 1 0.01
94 1 0.01
95 50 0.50
96 11 0.11
97 3 0.03
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (90 bp):
CTTGACATGGTCTTACATGGATCCTTATCAATACCAATGCCATGTCCAAACATGGTCTTACATGG
GATCCTTGCCTTACCAATGCCACAT
Found at i:79664603 original size:14 final size:13
Alignment explanation
Indices: 79664578--79664651 Score: 58
Period size: 14 Copynumber: 5.4 Consensus size: 13
79664568 GGGATATCAA
*
79664578 AACAAGAATTAAG
1 AACAATAATTAAG
79664591 AACACATAATTAAG
1 AACA-ATAATTAAG
* **
79664605 AACAAGTTAAATATT
1 AACAA--TAATTAAG
* *
79664620 TACAAGAATTAAG
1 AACAATAATTAAG
79664633 AACACATAATTAAG
1 AACA-ATAATTAAG
79664647 AACAA
1 AACAA
79664652 GTTAAATATT
Statistics
Matches: 46, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
13 13 0.28
14 24 0.52
15 9 0.20
ACGTcount: A:0.58, C:0.11, G:0.09, T:0.22
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:79664638 original size:42 final size:42
Alignment explanation
Indices: 79664579--79664663 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
79664569 GGATATCAAA
79664579 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
1 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
79664621 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
1 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
79664663 A
1 A
79664664 TCATACAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.26
Consensus pattern (42 bp):
ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
Found at i:79664647 original size:21 final size:21
Alignment explanation
Indices: 79664581--79664648 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
79664571 ATATCAAAAC
79664581 AAGAATTAAGAACACATAATT
1 AAGAATTAAGAACACATAATT
* * *
79664602 AAGAA-CAAGTTA-A-ATATTT
1 AAGAATTAAG-AACACATAATT
79664621 ACAAGAATTAAGAACACATAATT
1 --AAGAATTAAGAACACATAATT
79664644 AAGAA
1 AAGAA
79664649 CAAGTTAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
19 5 0.14
20 4 0.11
21 17 0.49
22 4 0.11
23 5 0.14
ACGTcount: A:0.57, C:0.09, G:0.10, T:0.24
Consensus pattern (21 bp):
AAGAATTAAGAACACATAATT
Found at i:79664684 original size:42 final size:42
Alignment explanation
Indices: 79664579--79664678 Score: 155
Period size: 42 Copynumber: 2.3 Consensus size: 42
79664569 GGATATCAAA
*
79664579 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
1 ACAACAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
*
79664621 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
1 ACAACAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
*
79664663 ATCATACAATTTAGAA
1 A-CA-ACAATTAAGAA
79664679 AATAATAGCA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
42 43 0.80
43 2 0.04
44 9 0.17
ACGTcount: A:0.54, C:0.10, G:0.09, T:0.27
Consensus pattern (42 bp):
ACAACAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
Found at i:79671764 original size:42 final size:41
Alignment explanation
Indices: 79671701--79671871 Score: 152
Period size: 42 Copynumber: 4.1 Consensus size: 41
79671691 AGTCCGACTC
* *
79671701 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGAT
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGAT
* * * *
79671741 TTAGACTACTGGCTCGAAGGCCCTTCGAAACTAAG-TCCGA-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGAT
* ** * *
79671781 TCATGACACTGGCTCTAAAAAGCCCTTCGAAATTAAGTTCGGTT
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAAACCAAGCTCGGAT
* *
79671825 ATTAG-CACTGGCTCAAAAGCCCATCGAGACCAAGCTCGGAT
1 -TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGAT
79671866 TTAGAC
1 TTAGAC
79671872 CCCGATTAGC
Statistics
Matches: 103, Mismatches: 19, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
40 18 0.17
41 30 0.29
42 40 0.39
43 12 0.12
44 1 0.01
45 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (41 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGAT
Found at i:79676771 original size:43 final size:42
Alignment explanation
Indices: 79676684--79676791 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 42
79676674 ATCTCATACA
* * ** * *
79676684 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATAGCCCAGATATGGTCTTACACGAAATCAAATAACG
*
79676726 ATGCCGATAGCCCAGCTATGGTCTTACACGAAATCAAATAACG
1 ATGCC-ATAGCCCAGATATGGTCTTACACGAAATCAAATAACG
*
79676769 ATGCCA-ATGTCCCAGACATGGTC
1 ATGCCATA-G-CCCAGATATGGTC
79676792 ACGTAATCTC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
41 1 0.02
42 7 0.13
43 46 0.85
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACACGAAATCAAATAACG
Found at i:79694556 original size:13 final size:15
Alignment explanation
Indices: 79694528--79694560 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
79694518 TAATAAAATA
79694528 AAATATTTTATAATT
1 AAATATTTTATAATT
79694543 AAATA-TTT-TAATT
1 AAATATTTTATAATT
79694556 AAATA
1 AAATA
79694561 AATCTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 3 0.17
15 5 0.28
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATATTTTATAATT
Found at i:79697221 original size:41 final size:40
Alignment explanation
Indices: 79697092--79697261 Score: 137
Period size: 41 Copynumber: 4.2 Consensus size: 40
79697082 TTTGAATACT
* * * * * *
79697092 TGAAAATGTTGAAAAGGAAGTTACTCGAAAGGGATAACATA
1 TGAAAAGGTTGAAAAAG-AGTTATTCGAAAAGGATATCAAA
* ** * *
79697133 CGAAAAGGTTGAAAAAGAAATATCCAAAAAGGATATCAAA
1 TGAAAAGGTTGAAAAAGAGTTATTCGAAAAGGATATCAAA
*
79697173 TGAAAAGGTTGAAAAAGACGTTATTCGAAAATGATATCAAA
1 TGAAAAGGTTGAAAAAGA-GTTATTCGAAAAGGATATCAAA
** * * *
79697214 TGAAAAGGAAGAAAATGA-TGGAATCAGAAAAGGATATC-AA
1 TGAAAAGGTTGAAAAAGAGT-TATTC-GAAAAGGATATCAAA
79697254 TGAAAAGG
1 TGAAAAGG
79697262 CCGAAAAGGA
Statistics
Matches: 103, Mismatches: 23, Indels: 7
0.77 0.17 0.05
Matches are distributed among these distances:
39 1 0.01
40 45 0.44
41 57 0.55
ACGTcount: A:0.52, C:0.07, G:0.22, T:0.19
Consensus pattern (40 bp):
TGAAAAGGTTGAAAAAGAGTTATTCGAAAAGGATATCAAA
Found at i:79697228 original size:81 final size:80
Alignment explanation
Indices: 79697092--79697261 Score: 173
Period size: 81 Copynumber: 2.1 Consensus size: 80
79697082 TTTGAATACT
* * * * **
79697092 TGAAAATGTTGAAAAGGAAGTTACTCGAAAGGGATAACATACGAAAAGGTTGAAAAAGA-AATAT
1 TGAAAAGGTTGAAAAAGAAGTTACTCGAAAAGGATAACAAACGAAAAGGAAGAAAAAGAGAA-AT
79697156 CCA-AAAAGGATATCAAA
65 -CAGAAAAGGATATC-AA
* * * * * * *
79697173 TGAAAAGGTTGAAAAAGACGTTATTCGAAAATGATATCAAATGAAAAGGAAGAAAATGATGGAAT
1 TGAAAAGGTTGAAAAAGAAGTTACTCGAAAAGGATAACAAACGAAAAGGAAGAAAAAGA-GAAAT
79697238 CAGAAAAGGATATCAA
65 CAGAAAAGGATATCAA
79697254 TGAAAAGG
1 TGAAAAGG
79697262 CCGAAAAGGA
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
81 59 0.81
82 13 0.18
83 1 0.01
ACGTcount: A:0.52, C:0.07, G:0.22, T:0.19
Consensus pattern (80 bp):
TGAAAAGGTTGAAAAAGAAGTTACTCGAAAAGGATAACAAACGAAAAGGAAGAAAAAGAGAAATC
AGAAAAGGATATCAA
Found at i:79707658 original size:20 final size:22
Alignment explanation
Indices: 79707633--79707679 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
79707623 TATAGTCTCA
*
79707633 ATATAAGACCAAA-C-ATTTAT
1 ATATAAGACCAAATCAATATAT
79707653 ATAT-A-ACCAAATCAATATAT
1 ATATAAGACCAAATCAATATAT
79707673 ATATAAG
1 ATATAAG
79707680 CATGGTGTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
18 6 0.27
19 2 0.09
20 13 0.59
21 1 0.05
ACGTcount: A:0.53, C:0.13, G:0.04, T:0.30
Consensus pattern (22 bp):
ATATAAGACCAAATCAATATAT
Found at i:79709830 original size:40 final size:40
Alignment explanation
Indices: 79709730--79709901 Score: 197
Period size: 40 Copynumber: 4.3 Consensus size: 40
79709720 GCTCCTCGTT
* *
79709730 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACT--CA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
79709768 CATAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CA-AATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
79709809 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
79709849 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
*
79709889 CAAAAGCCTTCGG
1 CAAATGCCTTCGG
79709902 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.02
39 30 0.26
40 78 0.67
41 7 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:79709914 original size:80 final size:80
Alignment explanation
Indices: 79709730--79709954 Score: 181
Period size: 80 Copynumber: 2.8 Consensus size: 80
79709720 GCTCCTCGTT
* * * * * * * * * *
79709730 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CATAATGCCTTCGGGACATAACCCGG
1 CAAAAGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGG
** *
79709794 -ATTTAACAACTCGCA
66 AATTT-GTATCTCGCA
* * * * *
79709809 CGAATGCCTTCGGGACTTAACCCGGATTTAGT-A-TCTCGCACAAAGGCCTTCGGGGCTTAACCC
1 CAAAAGCCTTCGGGACTTAACCCGGATATAGTCACT-TAGCACAAA-GCCTTCGGGACTTAACCC
79709872 GGAATTTGTATCTCGCA
64 GGAATTTGTATCTCGCA
** * *
79709889 CAAAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAAGCCTTCGGGA-CTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCG
79709953 GA
65 GA
79709955 CACATTCAAT
Statistics
Matches: 117, Mismatches: 22, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
77 1 0.01
78 1 0.01
79 35 0.30
80 66 0.56
81 13 0.11
82 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAAAGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGG
AATTTGTATCTCGCA
Found at i:79709962 original size:40 final size:41
Alignment explanation
Indices: 79709886--79709962 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
79709876 TTTGTATCTC
* * *
79709886 GCACAAAAGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
79709927 GCAC-AAAGCCTTCGGGA-CTTAGCCCGGACACATTCA
1 GCACAAAAGCCTTC-GGATCTTAGCCCGGACACATTCA
79709963 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
40 25 0.78
41 7 0.22
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (41 bp):
GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:79717118 original size:39 final size:40
Alignment explanation
Indices: 79717073--79717244 Score: 177
Period size: 40 Copynumber: 4.3 Consensus size: 40
79717063 GCTCCTCATT
* *
79717073 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
* **
79717113 C-AATGCCTTCGGGACATAACCCGAATTTAACAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
* * * *
79717152 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
* * * * * *
79717192 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-TTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCACA
*
79717232 CAAAAGCCTTCGG
1 CAAATGCCTTCGG
79717245 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 34 0.30
40 76 0.67
41 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
Found at i:79717227 original size:40 final size:40
Alignment explanation
Indices: 79717073--79717297 Score: 163
Period size: 40 Copynumber: 5.7 Consensus size: 40
79717063 GCTCCTCATT
* * * * * *
79717073 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* * * ** * *
79717113 C-AATGCCTTCGGGACATAACCCGAATTTAACAACTCACA
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
79717152 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* * *
79717192 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-TTATCTCGCA
1 CAAAAGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
** * * *
79717232 CAAAAGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAAAGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
79717273 C-AAAGCCTTCGGGACTTAGCCCGGA
1 CAAAAGCCTTCGGGACTTAACCCGGA
79717298 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
39 39 0.25
40 104 0.67
41 13 0.08
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:79717306 original size:41 final size:41
Alignment explanation
Indices: 79717229--79717306 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
79717219 TTTTTATCTC
* * *
79717229 GCACAAAAGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
79717270 GCAC-AAAGCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAAGCCTTC-GGATCTTAGCCCGGACA-CATTCA
79717307 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 20 0.62
41 12 0.38
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:79752791 original size:40 final size:40
Alignment explanation
Indices: 79752693--79752899 Score: 247
Period size: 40 Copynumber: 5.2 Consensus size: 40
79752683 TCCTCGTTCA
* * * * *
79752693 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
79752732 AATGCCTTCAGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
79752772 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
79752812 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
79752852 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
79752892 AATGCCTT
1 AATGCCTT
79752900 TGGATCTTAG
Statistics
Matches: 151, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 33 0.22
40 114 0.75
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:79752915 original size:80 final size:80
Alignment explanation
Indices: 79752658--79752955 Score: 245
Period size: 80 Copynumber: 3.7 Consensus size: 80
79752648 AAATCACGTA
* ** * * *
79752658 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
79752720 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * * *
79752736 CCTTCAGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
79752799 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
79752816 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
79752880 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
* ** * * *
79752896 CCTT-TGGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
79752956 CAGCATTCAA
Statistics
Matches: 179, Mismatches: 29, Indels: 22
0.78 0.13 0.10
Matches are distributed among these distances:
77 1 0.01
78 11 0.06
79 50 0.28
80 104 0.58
81 13 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:79752915 original size:120 final size:119
Alignment explanation
Indices: 79752693--79752955 Score: 280
Period size: 120 Copynumber: 2.2 Consensus size: 119
79752683 TCCTCGTTCA
* * *
79752693 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCAGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCAGGACATAACCCGGATT
* * *
79752758 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * * *
79752811 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCAGGACATAACCCGG-
** * * ** * *
79752876 ATTT-GTATCTCGCACAAATGCCTT-TGGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAACAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
79752932 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
79752956 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
119 37 0.31
120 72 0.61
121 9 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCAGGACATAACCCGGATT
TAACAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:79754773 original size:119 final size:120
Alignment explanation
Indices: 79754590--79754812 Score: 294
Period size: 119 Copynumber: 1.9 Consensus size: 120
79754580 TCCTCGTTCA
*
79754590 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
* * *
79754655 TTAGTAAC-TCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
79754710 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTT-ACTCCG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-CG
* * *
79754771 GATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
79754813 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 7 0.08
119 64 0.71
120 19 0.21
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:79754812 original size:40 final size:40
Alignment explanation
Indices: 79754588--79754812 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
79754578 GCTCCTCGTT
* *
79754588 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
79754628 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
79754668 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
79754708 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
79754747 CAAATGCCTTC-GGATCTTA-CTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGC-CCGGATATAGTAAC-TCGCA
79754788 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79754813 CATCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 113 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:79762716 original size:79 final size:80
Alignment explanation
Indices: 79762618--79762800 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
79762608 TCCTCGTTCA
* * *
79762618 AATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAAC-CCG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-ACTCCG
* *
79762680 GATTTAGTAAC-TCGCACC
63 GATATAGTAACTTAGCA-C
*
79762698 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTACTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGGAT
* *
79762762 ATGGTGACTTAGCAC
66 ATAGTAACTTAGCAC
*
79762777 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
79762801 CATCATTCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 5 0.06
79 57 0.64
80 27 0.30
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGGAT
ATAGTAACTTAGCAC
Found at i:79762800 original size:40 final size:40
Alignment explanation
Indices: 79762616--79762800 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
79762606 GCTCCTCGTT
* * *
79762616 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
79762656 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
79762696 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
79762735 CAAATGCCTTC-GGATCTTA-CTCCGGATATGGTGACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGC-CCGGATATAGTAAC-TCGCA
79762776 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79762801 CATCATTCAA
Statistics
Matches: 123, Mismatches: 14, Indels: 16
0.80 0.09 0.10
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:79765180 original size:9 final size:10
Alignment explanation
Indices: 79765168--79765233 Score: 59
Period size: 9 Copynumber: 6.8 Consensus size: 10
79765158 TACGTGGGAT
79765168 ATGATAT-AC
1 ATGATATGAC
*
79765177 ATGA-ATGAT
1 ATGATATGAC
79765186 ATGATATGCAC
1 ATGATATG-AC
*
79765197 ATGATATG-T
1 ATGATATGAC
*
79765206 ATGATATG-T
1 ATGATATGAC
79765215 ATGATATGCAC
1 ATGATATG-AC
79765226 ATGATATG
1 ATGATATG
79765234 TATGAAATGC
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
8 2 0.04
9 26 0.54
10 3 0.06
11 17 0.35
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:79765201 original size:29 final size:29
Alignment explanation
Indices: 79765168--79765232 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 29
79765158 TACGTGGGAT
79765168 ATGATATACATGA-ATGATATGATATGCAC
1 ATGATATACATGATATG-TATGATATGCAC
**
79765197 ATGATATGTATGATATGTATGATATGCAC
1 ATGATATACATGATATGTATGATATGCAC
79765226 ATGATAT
1 ATGATAT
79765233 GTATGAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 30 0.91
30 3 0.09
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.35
Consensus pattern (29 bp):
ATGATATACATGATATGTATGATATGCAC
Found at i:79765217 original size:4 final size:5
Alignment explanation
Indices: 79765165--79765238 Score: 68
Period size: 5 Copynumber: 15.4 Consensus size: 5
79765155 TGATACGTGG
* *
79765165 GATAT GATAT -ACAT GA-AT GATAT GATAT GCACAT GATAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
*
79765213 G-TAT GATAT GCACAT GATAT G-TAT GA
1 GATAT GATAT G-ATAT GATAT GATAT GA
79765239 AATGCACATG
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
4 19 0.33
5 30 0.53
6 8 0.14
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (5 bp):
GATAT
Found at i:79765234 original size:20 final size:20
Alignment explanation
Indices: 79765206--79765250 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
79765196 CATGATATGT
*
79765206 ATGATATGTATGATATGCAC
1 ATGATATGTATGAAATGCAC
79765226 ATGATATGTATGAAATGCAC
1 ATGATATGTATGAAATGCAC
79765246 ATGAT
1 ATGAT
79765251 GTAATCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (20 bp):
ATGATATGTATGAAATGCAC
Found at i:79765238 original size:9 final size:9
Alignment explanation
Indices: 79765197--79765238 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
79765187 TGATATGCAC
79765197 ATGATATGT
1 ATGATATGT
79765206 ATGATATGT
1 ATGATATGT
*
79765215 ATGATATGCAC
1 ATGATATG--T
79765226 ATGATATGT
1 ATGATATGT
79765235 ATGA
1 ATGA
79765239 AATGCACATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 21 0.72
11 8 0.28
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (9 bp):
ATGATATGT
Found at i:79765342 original size:26 final size:26
Alignment explanation
Indices: 79765300--79765487 Score: 258
Period size: 26 Copynumber: 7.3 Consensus size: 26
79765290 GAGGAAGTGC
79765300 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
79765325 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
79765351 AAAAGGGCTTATGCCCCAGTGTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
79765377 AAAAGGGCTTATGCCGCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
79765403 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
79765429 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
79765455 AAAAGGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
79765478 AAAAGAGGCT
1 AAAAG-GGCT
79765488 AGGCCTCCAG
Statistics
Matches: 144, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
23 5 0.03
24 7 0.05
25 15 0.10
26 117 0.81
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:79765377 original size:52 final size:52
Alignment explanation
Indices: 79765300--79765487 Score: 312
Period size: 52 Copynumber: 3.7 Consensus size: 52
79765290 GAGGAAGTGC
79765300 AAAAGGGC-TATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
79765351 AAAAGGGCTTATGCCCCAGTGTATTGAAAAGGGCTTATGCCGCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
79765403 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
79765455 AAAAGGGCTT-TGCCCTAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
79765488 AGGCCTCCAG
Statistics
Matches: 130, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
49 5 0.04
50 9 0.07
51 15 0.12
52 101 0.78
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:79773138 original size:21 final size:20
Alignment explanation
Indices: 79773112--79773151 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
79773102 GCATTACGGT
79773112 AAGTTGGGCCTCAAGGGGCTG
1 AAGTTGGGCC-CAAGGGGCTG
*
79773133 AAGTTGGGCCCAATGGGCT
1 AAGTTGGGCCCAAGGGGCT
79773152 TTCGGGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (20 bp):
AAGTTGGGCCCAAGGGGCTG
Found at i:79773517 original size:9 final size:10
Alignment explanation
Indices: 79773496--79773561 Score: 59
Period size: 9 Copynumber: 6.8 Consensus size: 10
79773486 ATAGTGGGAT
79773496 ATGATAT-AC
1 ATGATATGAC
*
79773505 ATGA-ATGAT
1 ATGATATGAC
79773514 ATGATATGCAC
1 ATGATATG-AC
*
79773525 ATGATATG-T
1 ATGATATGAC
*
79773534 ATGATATG-T
1 ATGATATGAC
79773543 ATGATATGCAC
1 ATGATATG-AC
79773554 ATGATATG
1 ATGATATG
79773562 TATGAAATGC
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
8 2 0.04
9 26 0.54
10 3 0.06
11 17 0.35
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:79773529 original size:29 final size:29
Alignment explanation
Indices: 79773496--79773560 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 29
79773486 ATAGTGGGAT
79773496 ATGATATACATGA-ATGATATGATATGCAC
1 ATGATATACATGATATG-TATGATATGCAC
**
79773525 ATGATATGTATGATATGTATGATATGCAC
1 ATGATATACATGATATGTATGATATGCAC
79773554 ATGATAT
1 ATGATAT
79773561 GTATGAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 30 0.91
30 3 0.09
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.35
Consensus pattern (29 bp):
ATGATATACATGATATGTATGATATGCAC
Found at i:79773545 original size:4 final size:5
Alignment explanation
Indices: 79773493--79773566 Score: 68
Period size: 5 Copynumber: 15.4 Consensus size: 5
79773483 TTGATAGTGG
* *
79773493 GATAT GATAT -ACAT GA-AT GATAT GATAT GCACAT GATAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
*
79773541 G-TAT GATAT GCACAT GATAT G-TAT GA
1 GATAT GATAT G-ATAT GATAT GATAT GA
79773567 AATGCACATG
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
4 19 0.33
5 30 0.53
6 8 0.14
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (5 bp):
GATAT
Found at i:79773562 original size:20 final size:20
Alignment explanation
Indices: 79773534--79773578 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
79773524 CATGATATGT
*
79773534 ATGATATGTATGATATGCAC
1 ATGATATGTATGAAATGCAC
79773554 ATGATATGTATGAAATGCAC
1 ATGATATGTATGAAATGCAC
79773574 ATGAT
1 ATGAT
79773579 GTAATCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (20 bp):
ATGATATGTATGAAATGCAC
Found at i:79773566 original size:9 final size:9
Alignment explanation
Indices: 79773525--79773566 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
79773515 TGATATGCAC
79773525 ATGATATGT
1 ATGATATGT
79773534 ATGATATGT
1 ATGATATGT
*
79773543 ATGATATGCAC
1 ATGATATG--T
79773554 ATGATATGT
1 ATGATATGT
79773563 ATGA
1 ATGA
79773567 AATGCACATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 21 0.72
11 8 0.28
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (9 bp):
ATGATATGT
Found at i:79773670 original size:26 final size:26
Alignment explanation
Indices: 79773628--79773706 Score: 103
Period size: 26 Copynumber: 3.2 Consensus size: 26
79773618 GAGGAAGTGC
79773628 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
79773653 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
79773679 AAAAGGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
79773702 AAAAG
1 AAAAG
79773707 AAGCTAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
23 5 0.10
24 3 0.06
25 15 0.31
26 25 0.52
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:79773952 original size:7 final size:7
Alignment explanation
Indices: 79773940--79773981 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
79773930 GGCCCAGTGT
79773940 TATGAAA
1 TATGAAA
79773947 TATGAAA
1 TATGAAA
79773954 TATGAAA
1 TATGAAA
79773961 TATGAAA
1 TATGAAA
79773968 TATGAAA
1 TATGAAA
79773975 TATGAAA
1 TATGAAA
79773982 AGACTTCGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:79778750 original size:10 final size:10
Alignment explanation
Indices: 79778735--79778763 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
79778725 GTTTTACACT
79778735 TAGGAGAGCA
1 TAGGAGAGCA
79778745 TAGGAGAGCA
1 TAGGAGAGCA
79778755 TAGGAGAGC
1 TAGGAGAGC
79778764 GAAAGGAACG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.41, T:0.10
Consensus pattern (10 bp):
TAGGAGAGCA
Found at i:79791762 original size:47 final size:47
Alignment explanation
Indices: 79791708--79791992 Score: 428
Period size: 47 Copynumber: 6.1 Consensus size: 47
79791698 TTAGGATTTT
** * * *
79791708 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
79791755 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
79791802 ATGTGATGAATGCGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
79791849 ATGTGATGAATGCGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
79791896 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
79791943 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
79791990 ATG
1 ATG
79791993 CGAAACGTGT
Statistics
Matches: 222, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 219 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:79791808 original size:22 final size:22
Alignment explanation
Indices: 79791780--79791902 Score: 92
Period size: 22 Copynumber: 5.3 Consensus size: 22
79791770 ACATGCATAT
79791780 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
79791802 ATGTGATGAATG-CGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
79791826 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
79791849 ATGTGATGAATG-CGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
79791873 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
79791896 ATGTGAT
1 ATGTGAT
79791903 GAATGTGAAC
Statistics
Matches: 79, Mismatches: 8, Indels: 28
0.69 0.07 0.24
Matches are distributed among these distances:
22 25 0.32
23 18 0.23
24 18 0.23
25 18 0.23
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Done.