Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 242 of 316
Found at i:79792019 original size:46 final size:46
Alignment explanation
Indices: 79791966--79792056 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
79791956 GGAAGTGTAT
* *
79791966 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
79792012 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
79792057 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:79797374 original size:42 final size:42
Alignment explanation
Indices: 79797225--79797381 Score: 134
Period size: 42 Copynumber: 3.6 Consensus size: 42
79797215 GGGTCCCAAA
*** * * * *
79797225 GCCATGTCCCAGACATGGTCTTACGTGGGACCACATATCGAT
1 GCCATGTCCCAGACATGGTCTTATACGAGACCTCGTACCGAT
* * * * *
79797267 GCCATATCCCAGATATGGTCTTATACGAAGTCTCGAATCAGTGCCGAC
1 GCCATGTCCCAGACATGGTCTTATACG-AGAC-C---TC-GTACCGAT
* *
79797315 GCCATGCCCCAAACATGGTCTTATACGAGACCTCGTACCGAT
1 GCCATGTCCCAGACATGGTCTTATACGAGACCTCGTACCGAT
79797357 GCCATGTCCCAGACATGGTCTTATA
1 GCCATGTCCCAGACATGGTCTTATA
79797382 GAAATCACTT
Statistics
Matches: 88, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
42 51 0.58
43 4 0.05
44 1 0.01
46 1 0.01
47 4 0.05
48 27 0.31
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (42 bp):
GCCATGTCCCAGACATGGTCTTATACGAGACCTCGTACCGAT
Found at i:79797483 original size:48 final size:48
Alignment explanation
Indices: 79797352--79797483 Score: 126
Period size: 48 Copynumber: 2.8 Consensus size: 48
79797342 AGACCTCGTA
**
79797352 CCGATGCCATGTCCCAGACATGGTC-TT-ATAGAAATCACTTATTGATG
1 CCGATGCCATGTCCCAGACATGGTCTTTCAT-GGGATCACTTATTGATG
* * * * * ** *
79797399 CCGAAGCCATATCCCTGATATGGTCTTACACAGGATC-GTGTATTGATG
1 CCGATGCCATGTCCCAGACATGGTCTTTCATGGGATCACT-TATTGATG
*
79797447 CTGATGCCATGTCCCAGACATGGTCTTTCATGGGATC
1 CCGATGCCATGTCCCAGACATGGTCTTTCATGGGATC
79797484 TCGTTAATCA
Statistics
Matches: 64, Mismatches: 18, Indels: 5
0.74 0.21 0.06
Matches are distributed among these distances:
47 22 0.34
48 41 0.64
49 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTTCATGGGATCACTTATTGATG
Found at i:79798951 original size:36 final size:36
Alignment explanation
Indices: 79798910--79798981 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
79798900 ATTGCATGGT
79798910 GTGCCATTATTTATCATTTTAGATTGGGATCTGAGG
1 GTGCCATTATTTATCATTTTAGATTGGGATCTGAGG
*
79798946 GTGCCATTATTTATCATTTTAGATTGGGATTTGAGG
1 GTGCCATTATTTATCATTTTAGATTGGGATCTGAGG
79798982 TTTACCTCTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (36 bp):
GTGCCATTATTTATCATTTTAGATTGGGATCTGAGG
Found at i:79823053 original size:40 final size:40
Alignment explanation
Indices: 79822966--79823046 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
79822956 NNNNNNNNNN
* **
79822966 TTACTA-AATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAG
1 TTACTATAA-CCGGGCTAAGTCCCGAAGGCAATTGAACGAG
* *
79823006 TTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TTACTATAACCGGGCTAAGTCCCGAAGGCAATTGAACGAG
79823046 T
1 T
79823047 AGCTATATCC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 33 0.94
41 2 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TTACTATAACCGGGCTAAGTCCCGAAGGCAATTGAACGAG
Found at i:79830985 original size:40 final size:40
Alignment explanation
Indices: 79830794--79830978 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
79830784 TTGAATGATG
* ** * *
79830794 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
79830834 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79830874 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79830913 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
79830954 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79830979 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79831000 original size:79 final size:79
Alignment explanation
Indices: 79830847--79831011 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
79830837 GGACTAAGAT
* * * **
79830847 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
79830912 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
79830926 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
79830989 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
79831005 CCGAAGG
1 CCGAAGG
79831012 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:79834227 original size:46 final size:46
Alignment explanation
Indices: 79834174--79834390 Score: 217
Period size: 46 Copynumber: 4.6 Consensus size: 46
79834164 TGTGCAAGCT
* *
79834174 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCC
* * * *
79834220 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATAAAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CATGACGAGAGCC
* * *
79834268 AGTGTAAGACATGTGTGGGACATGCAACGGCCTCGA-GACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGACG-AGAGCC
* * * *
79834314 AGTGTAAGACATGTCTGGGACATGCATCGGCTAC-TAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-GACGAGAGCC
79834360 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
79834391 ACTTGAGATA
Statistics
Matches: 142, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
45 1 0.01
46 66 0.46
47 46 0.32
48 29 0.20
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCC
Found at i:79834415 original size:47 final size:45
Alignment explanation
Indices: 79834169--79834437 Score: 190
Period size: 47 Copynumber: 5.8 Consensus size: 45
79834159 ATTCGTGTGC
* *
79834169 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC--CACATTAT
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGA-TAT
* ** *
79834213 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAAAGACGA-
1 -A-AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTGAGA-TAT
** * * * **
79834263 GGGCTAGTGTAAGACATGTGTGGGACATGCAACGGCCTCGAGACGT
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTTGAGATAT
*
79834309 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACT-AGATGAT
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCT--TGAGAT-AT
*
79834356 -AG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
1 AAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTGAGATAT
* * *
79834402 AAGCTAGTATAAGACCGTGTCTAGGACATGGCATCG
1 AAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
79834438 ACACCTTACC
Statistics
Matches: 180, Mismatches: 27, Indels: 32
0.75 0.11 0.13
Matches are distributed among these distances:
45 3 0.02
46 69 0.38
47 77 0.43
48 28 0.16
51 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (45 bp):
AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGATAT
Found at i:79834429 original size:140 final size:140
Alignment explanation
Indices: 79834169--79834431 Score: 343
Period size: 140 Copynumber: 1.9 Consensus size: 140
79834159 ATTCGTGTGC
* *
79834169 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATG
* ** * * *
79834234 TCTGGGACATGGCATCGGCATAAAGACGAGGGCTAGTGTAAGACATGTGTGGGACATGCAACGGC
66 TCTGGGACATGGCATCGACATAAAGACGAAAGCTAGTATAAGACATGTCTAGGACATGCAACGGC
79834299 CTCGAGACGT
131 CTCGAGACGT
* * *
79834309 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAC-TAGATGATAGTCAGTGTAAGACCAT
1 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-GATGAGAGCCAGTGTAAGACCAT
** * *
79834373 GTCTGGGACATGGCATCGAC-TTGAGA-TATAAGCTAGTATAAGACCGTGTCTAGGACATG
65 GTCTGGGACATGGCATCGACATAAAGACGA-AAGCTAGTATAAGA-CATGTCTAGGACATG
79834432 GCATCGACAC
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
138 1 0.01
139 16 0.15
140 88 0.84
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (140 bp):
AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGACATAAAGACGAAAGCTAGTATAAGACATGTCTAGGACATGCAACGGC
CTCGAGACGT
Found at i:79841720 original size:47 final size:46
Alignment explanation
Indices: 79841659--79841867 Score: 187
Period size: 46 Copynumber: 4.5 Consensus size: 46
79841649 TGTAAGCTAA
*
79841659 TGTAAGACATGTCTGGGACATGAATCGGCTA-CATTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGAATCGGCTATCA-GATGAGAGCCAG
* * * *
79841705 TGTAAGACCATGTCTGGGACATGGCATTGGC-ATCAAGACG-GAGGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GAATCGGCTATC-AGATGAGA-GCCAG
* *
79841753 TGTAAGACATGTCTGGGACATGCAA-CGGC-CTCGAGATGTA-AGCCAA
1 TGTAAGACATGTCTGGGACATG-AATCGGCTATC-AGATG-AGAGCCAG
* * * * *
79841799 TGTAAGACATGTCTGGGACATGCATCGGTTATGAGATGATAGTCAG
1 TGTAAGACATGTCTGGGACATGAATCGGCTATCAGATGAGAGCCAG
79841845 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
79841868 GCATCAACTT
Statistics
Matches: 133, Mismatches: 18, Indels: 23
0.76 0.10 0.13
Matches are distributed among these distances:
45 2 0.02
46 61 0.46
47 49 0.37
48 20 0.15
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGAATCGGCTATCAGATGAGAGCCAG
Found at i:79841881 original size:47 final size:47
Alignment explanation
Indices: 79841649--79841922 Score: 206
Period size: 47 Copynumber: 5.9 Consensus size: 47
79841639 GTCATTCGTG
* * * *
79841649 TGTAAGCTAATGTAAGA-CATGTCTGGGACAT-GAATCGGCTAC-ATTA
1 TGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGA-GA
* *
79841695 TG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCAAGA
1 TGTA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAGA
* * * * *
79841743 CGGAGGCTAGTGTAAGA-CATGTCTGGGACAT-GCAACGGCCTCGAGA
1 TGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGAGA
* * *
79841789 TGTAAGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGTTATGAGA
1 TGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGA
* ** *
79841835 TG-ATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGA
1 TGTA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGA
* * * * * *
79841882 TATGAGCCGGTATAAGACCGTGTCTAGGACATGGCATCGGC
1 TGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
79841923 ACCTTACCCT
Statistics
Matches: 183, Mismatches: 33, Indels: 23
0.77 0.14 0.10
Matches are distributed among these distances:
45 3 0.02
46 72 0.39
47 79 0.43
48 26 0.14
49 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
TGTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGA
Found at i:79841906 original size:140 final size:140
Alignment explanation
Indices: 79841649--79841914 Score: 313
Period size: 140 Copynumber: 1.9 Consensus size: 140
79841639 GTCATTCGTG
* *
79841649 TGTAAGCTAATGTAAGACATGTCTGGGACATGAATCGGCTACATTATGAGAGCCAGTGTAAGACC
1 TGTAAGCCAATGTAAGACATGTCTGGGACATGAATCGGCTACATGATGAGAGCCAGTGTAAGACC
*** * * * *
79841714 ATGTCTGGGACATGGCATTGGCATCAAGACGGAGGCTAGTGTAAGACATGTCTGGGACATGCAAC
66 ATGTCTGGGACATGGCATCAACATCAAGAAGGAGGCCAGTATAAGACATGTCTAGGACATGCAAC
79841779 GGCCTCGAGA
131 GGCCTCGAGA
* * * * *
79841789 TGTAAGCCAATGTAAGACATGTCTGGGACATGCATCGGTTATGA-GATGATAGTCAGTGTAAGAC
1 TGTAAGCCAATGTAAGACATGTCTGGGACATGAATCGGCTA-CATGATGAGAGCCAGTGTAAGAC
** * * *
79841853 CATGTCTGGGACATGGCATCAAC-TTGAGATATGA-GCCGGTATAAGACCGTGTCTAGGACATG
65 CATGTCTGGGACATGGCATCAACATCAAGA-AGGAGGCCAGTATAAGA-CATGTCTAGGACATG
79841915 GCATCGGCAC
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
139 13 0.12
140 90 0.87
141 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (140 bp):
TGTAAGCCAATGTAAGACATGTCTGGGACATGAATCGGCTACATGATGAGAGCCAGTGTAAGACC
ATGTCTGGGACATGGCATCAACATCAAGAAGGAGGCCAGTATAAGACATGTCTAGGACATGCAAC
GGCCTCGAGA
Found at i:79844634 original size:56 final size:57
Alignment explanation
Indices: 79844499--79844636 Score: 210
Period size: 56 Copynumber: 2.5 Consensus size: 57
79844489 TCCCAGATAG
* *
79844499 GGTCTTACTCGCACACATATA-CCATAGTCACATATCGATGTCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCGATAGTCACATATCGATGTCAACATATAAAATGT
* *
79844555 GGTCTTACTGGCACACATATATCGAT-GTCACATATCGAT-TCCAATATATAAAATGT
1 GGTCTTACTCGCACACATATATCGATAGTCACATATCGATGT-CAACATATAAAATGT
79844611 GGTCTTACTCGCACACATATATCGAT
1 GGTCTTACTCGCACACATATATCGAT
79844637 TCCATGGTCT
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
55 1 0.01
56 71 0.95
57 3 0.04
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (57 bp):
GGTCTTACTCGCACACATATATCGATAGTCACATATCGATGTCAACATATAAAATGT
Found at i:79845811 original size:14 final size:15
Alignment explanation
Indices: 79845792--79845820 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79845782 GCACGAAATT
79845792 TTCACACAT-ATAAA
1 TTCACACATAATAAA
79845806 TTCACACATAATAAA
1 TTCACACATAATAAA
79845821 AATAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:79849406 original size:15 final size:15
Alignment explanation
Indices: 79849386--79849416 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79849376 AAATATGAAA
79849386 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
79849401 GATATGTTTTGTATT
1 GATATGTTTTGGATT
79849416 G
1 G
79849417 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:79850115 original size:56 final size:56
Alignment explanation
Indices: 79850029--79850163 Score: 243
Period size: 56 Copynumber: 2.4 Consensus size: 56
79850019 CCATGGCATC
* *
79850029 GATATATGTGTGCGCGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTCT
1 GATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCAATATGTGACTCT
*
79850085 GATATATGTGTGCGAGTAATACCACATTTTATACGTTGGCATCAATATGTGACTCT
1 GATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCAATATGTGACTCT
79850141 GATATATGTGTGCGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
79850164 CTGTCTGGGA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCAATATGTGACTCT
Found at i:79851367 original size:24 final size:23
Alignment explanation
Indices: 79851331--79851375 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
79851321 TTATTTATTG
*
79851331 ATATGGATTGATATGATATATAT
1 ATATGGATTGATAAGATATATAT
*
79851354 ATATGTATATGATAAGATATAT
1 ATATGGAT-TGATAAGATATAT
79851376 TTGTAATGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (23 bp):
ATATGGATTGATAAGATATATAT
Found at i:79851375 original size:20 final size:19
Alignment explanation
Indices: 79851341--79851380 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
79851331 ATATGGATTG
*
79851341 ATATGATATATATATATGT
1 ATATGATAGATATATATGT
*
79851360 ATATGATAAGATATATTTGT
1 ATATGAT-AGATATATATGT
79851380 A
1 A
79851381 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (19 bp):
ATATGATAGATATATATGT
Found at i:79854968 original size:73 final size:73
Alignment explanation
Indices: 79854849--79854995 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
79854839 GAATGTCTAT
79854849 TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
1 TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
79854914 AATATATA
66 AATATATA
79854922 TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
1 TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
79854987 AATATATA
66 AATATATA
79854995 T
1 T
79854996 ATGAATGAAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (73 bp):
TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
AATATATA
Found at i:79858246 original size:16 final size:16
Alignment explanation
Indices: 79858225--79858256 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79858215 CAAGAACTTT
*
79858225 TCTTAATGTTTCAAGG
1 TCTTAATCTTTCAAGG
79858241 TCTTAATCTTTCAAGG
1 TCTTAATCTTTCAAGG
79858257 AGATTACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.44
Consensus pattern (16 bp):
TCTTAATCTTTCAAGG
Found at i:79860127 original size:48 final size:48
Alignment explanation
Indices: 79860012--79860323 Score: 199
Period size: 48 Copynumber: 6.5 Consensus size: 48
79860002 TATGTATGCT
* * * ** *
79860012 AGTGTAAAACATGTCTGGGACATGCATCG--GT-GACATATTGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACA-AGCC
* * *
79860058 AGTGTAAGACATGTCTGGGACATGCATTGACGTCGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAAGCC
* * *
79860106 AGTGTAAGACATGTCTTGGACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAAGCC
* * * * **
79860154 AGTGTAAGACTTGTCTGGGACATGGCATCGACATTGATGGAT-GA-GGGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGA--GATATACAAGCC
* * * * * * *
79860203 AGTGTAAGACCTGTTTGGGACACGACATTGGCCTCGATATATGA-AAGTC
1 AGTGTAAGACATGTCTGGGACATG-CATCGACCTCGAGATAT-ACAAGCC
* * * ** * * *
79860252 AATGTAAGACCTATCTGGGACATGGCATCGA-CT-TTGATGTGCTAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAGATATACAAGCC
79860299 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
79860324 GGACGGCATC
Statistics
Matches: 204, Mismatches: 50, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
46 27 0.13
47 17 0.08
48 83 0.41
49 72 0.35
50 2 0.01
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAAGCC
Found at i:79860210 original size:49 final size:47
Alignment explanation
Indices: 79860154--79860324 Score: 146
Period size: 49 Copynumber: 3.5 Consensus size: 47
79860144 TATACAAGCT
*
79860154 AGTGTAAGACTTGTCTGGGACATGGCATCGACATTGATGGATGAGGGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATGGATGA--GCC
* * * * * * * ** *
79860203 AGTGTAAGACCTGTTTGGGACACGACATTGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATGGATG--AGCC
* * * *
79860252 AATGTAAGACCTATCTGGGACATGGCATCGACTTTGATGTGCT-AGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATG-GATGAGCC
79860299 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
79860325 GACGGCATCT
Statistics
Matches: 92, Mismatches: 26, Indels: 9
0.72 0.20 0.07
Matches are distributed among these distances:
47 13 0.14
48 13 0.14
49 64 0.70
50 1 0.01
51 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATGGATGAGCC
Found at i:79860269 original size:98 final size:95
Alignment explanation
Indices: 79860102--79860321 Score: 250
Period size: 98 Copynumber: 2.3 Consensus size: 95
79860092 GAGATATACC
* * * *
79860102 AGCCAGTGTAAGACATGTCTT-GGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACTT
1 AGCCAGTGTAAGACCTGT-TTGGGACACGCATCGGCCTCGAGATATACAAGCTAATGTAAGACCT
*
79860166 GTCTGGGACATGGCATCGACATTGATG-GAT
65 ATCTGGGACATGGCATCGACATTGATGTGAT
* *
79860196 GAGGGCCAGTGTAAGACCTGTTTGGGACACGACATTGGCCTCGATATATGA-AAG-TCAATGTAA
1 -A--GCCAGTGTAAGACCTGTTTGGGACACG-CATCGGCCTCGAGATAT-ACAAGCT-AATGTAA
* *
79860259 GACCTATCTGGGACATGGCATCGACTTTGATGTGCT
60 GACCTATCTGGGACATGGCATCGACATTGATGTGAT
*
79860295 AGCCAGTGTAAGACCATGTCTGGGACA
1 AGCCAGTGTAAGACC-TGTTTGGGACA
79860322 TGGGACGGCA
Statistics
Matches: 107, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
95 1 0.01
96 16 0.15
97 33 0.31
98 54 0.50
99 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (95 bp):
AGCCAGTGTAAGACCTGTTTGGGACACGCATCGGCCTCGAGATATACAAGCTAATGTAAGACCTA
TCTGGGACATGGCATCGACATTGATGTGAT
Found at i:79870423 original size:46 final size:46
Alignment explanation
Indices: 79870373--79870543 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
79870363 TGGTTGAGCA
79870373 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
79870419 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT-G
* * *
79870463 GCATC-AGACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGC-AACG
1 TC--CGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
79870510 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
79870544 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
43 7 0.07
44 2 0.02
45 31 0.30
46 55 0.53
47 4 0.04
48 1 0.01
49 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:79887712 original size:46 final size:46
Alignment explanation
Indices: 79887661--79887835 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
79887651 GATGGTTGAG
79887661 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * *
79887707 TATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GAT-CTAACTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AA--A
* *
79887752 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA
1 --CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
** *
79887800 CGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
79887836 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
45 3 0.03
46 62 0.57
47 30 0.28
48 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:79887819 original size:93 final size:93
Alignment explanation
Indices: 79887660--79887830 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
79887650 GGATGGTTGA
* *
79887660 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
79887725 TGAGTCCGAGTTCGTGAGATCTAACTAG
66 TGAGTCCGAGTTCGTGAGATCTAACTAG
* * * *
79887753 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
79887818 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
79887831 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATCTAACTAG
Found at i:79888097 original size:19 final size:20
Alignment explanation
Indices: 79888060--79888097 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79888050 ATAAGGTGGT
79888060 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
79888080 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
79888098 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:79892682 original size:46 final size:45
Alignment explanation
Indices: 79892626--79892790 Score: 215
Period size: 46 Copynumber: 3.6 Consensus size: 45
79892616 ATATGTGTGT
79892626 TAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAC-AAAGC
* *
79892672 TAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACAAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACAA-AGC
* * *
79892718 TAGTGTAAGACATGTCTGGGACATGCATTAGCCA-TGAGATATATAAGC
1 TAGTGTAAGACATGTCTGGGACATGCA-TCGACATTGAG--ACA-AAGC
*
79892766 TAGTGTAAGACTTGTCTGGGACATG
1 TAGTGTAAGACATGTCTGGGACATG
79892791 GCGTCAGCTT
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
45 2 0.02
46 71 0.66
47 4 0.04
48 29 0.27
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.25
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACAAAGC
Found at i:79898116 original size:42 final size:42
Alignment explanation
Indices: 79898054--79898209 Score: 150
Period size: 42 Copynumber: 3.7 Consensus size: 42
79898044 TAAGATGCCA
* ** *
79898054 ATGCCATGTCCCAAACATGGTCTTACATGGGATCTCACATCG
1 ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
* * * * *
79898096 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCATTTCG
1 ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
* * * * * *
79898138 ATGCCGTGTCCCAGACGTGGTTTTACATGAAATCTCATATCA
1 ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
** *
79898180 ACACCATATCCCAAATATGGTCTTACATGA
1 ATGCCATATCCCAAACATGGTCTTACATGA
79898210 CAACACATAC
Statistics
Matches: 88, Mismatches: 26, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
Found at i:79899106 original size:5 final size:5
Alignment explanation
Indices: 79899096--79899123 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
79899086 AGATGACTAT
79899096 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
79899124 AATCTATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:79904403 original size:19 final size:22
Alignment explanation
Indices: 79904352--79904393 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
79904342 TCGATATCAG
79904352 ACTAA-AGTATCGATACTTTAT
1 ACTAACAGTATCGATACTTTAT
79904373 ACTAACAGTATCGATACTTTA
1 ACTAACAGTATCGATACTTTA
79904394 CAAGAGTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (22 bp):
ACTAACAGTATCGATACTTTAT
Found at i:79908513 original size:24 final size:24
Alignment explanation
Indices: 79908486--79908569 Score: 64
Period size: 24 Copynumber: 3.3 Consensus size: 24
79908476 TATAGGTCGG
79908486 AAATTTAACAAGTTAATCATAAAT
1 AAATTTAACAAGTTAATCATAAAT
* * *
79908510 AAATTTAATTATA-TTAAATAATTATTATT
1 AAATTTAA-CA-AGTT-AATCA-TA--AAT
*
79908539 TAA-TTAACAAGTTAATCATAAAT
1 AAATTTAACAAGTTAATCATAAAT
79908562 AAATTTAA
1 AAATTTAA
79908570 TTATATTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
23 4 0.09
24 12 0.27
25 5 0.11
26 10 0.23
27 5 0.11
28 4 0.09
29 4 0.09
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (24 bp):
AAATTTAACAAGTTAATCATAAAT
Found at i:79908529 original size:19 final size:19
Alignment explanation
Indices: 79908505--79908580 Score: 58
Period size: 19 Copynumber: 4.3 Consensus size: 19
79908495 AAGTTAATCA
79908505 TAAATAAATTTAATTATAT
1 TAAATAAATTTAATTATAT
79908524 TAAAT-AA-TT-ATTAT-T
1 TAAATAAATTTAATTATAT
* * *
79908539 TAATTAACAAGTTAA-T-CA-
1 TAAAT-A-AATTTAATTATAT
79908557 TAAATAAATTTAATTATAT
1 TAAATAAATTTAATTATAT
79908576 TAAAT
1 TAAAT
79908581 TATTATTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 18
0.65 0.08 0.27
Matches are distributed among these distances:
15 5 0.12
16 11 0.26
17 4 0.09
18 9 0.21
19 13 0.30
20 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (19 bp):
TAAATAAATTTAATTATAT
Found at i:79908547 original size:52 final size:52
Alignment explanation
Indices: 79908490--79908593 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
79908480 GGTCGGAAAT
79908490 TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATAATTATTATTTAA
1 TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATAATTATTATTTAA
*
79908542 TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATTATTATTATTTAA
1 TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATAATTATTATTTAA
79908594 CTATCTTATA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (52 bp):
TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATAATTATTATTTAA
Found at i:79908591 original size:24 final size:24
Alignment explanation
Indices: 79908512--79908610 Score: 67
Period size: 24 Copynumber: 4.0 Consensus size: 24
79908502 TCATAAATAA
*
79908512 ATTTAATTATATTAAATAATTATT
1 ATTTAATTATATTAAATTATTATT
* * * *
79908536 ATTTAATTAACAAGTT-AATCATAAATAA
1 ATTTAATT-A-TA-TTAAATTAT-TAT-T
79908564 ATTTAATTATATTAAATTATTATT
1 ATTTAATTATATTAAATTATTATT
* * *
79908588 ATTTAACTATCTTATATT-TTATT
1 ATTTAATTATATTAAATTATTATT
79908611 TTTTGCGAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
23 5 0.09
24 23 0.40
25 5 0.09
26 12 0.21
27 5 0.09
28 8 0.14
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.52
Consensus pattern (24 bp):
ATTTAATTATATTAAATTATTATT
Found at i:79911594 original size:13 final size:13
Alignment explanation
Indices: 79911576--79911603 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79911566 AGAGATGAGA
79911576 TGTTTAGTTCACT
1 TGTTTAGTTCACT
79911589 TGTTTAGTTCACT
1 TGTTTAGTTCACT
79911602 TG
1 TG
79911604 AAAATATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.54
Consensus pattern (13 bp):
TGTTTAGTTCACT
Found at i:79918326 original size:40 final size:40
Alignment explanation
Indices: 79918282--79918373 Score: 175
Period size: 40 Copynumber: 2.3 Consensus size: 40
79918272 AATGAACAAC
79918282 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
1 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
*
79918322 TTTTGTGAAGTTGTTTTCATGGAAACACCTAAGAGGACCA
1 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
79918362 TTTTGTGAAGTT
1 TTTTGTGAAGTT
79918374 TATAAAATAG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (40 bp):
TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
Found at i:79918948 original size:48 final size:48
Alignment explanation
Indices: 79918877--79919194 Score: 267
Period size: 48 Copynumber: 6.6 Consensus size: 48
79918867 TATGTGTGCT
* *
79918877 AGTGTAAGACCATGTATGGGACATGGCATCAGCCACATTATAAGAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCC
* * * *
79918925 AGTGTAAGACCATGTTTGAGACATGGCATC-G--GCATTGATAGGTGAGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATT-ATA--AGAGCC
* * **** ** * *
79918973 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGA-TATGTGTGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCAG-CCACATTATAAGAGCC
*
79919021 AGTGTAAGACCATGTCTGAGACATGACATCAGCCACATTATAAGAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCC
* * *
79919069 AGTGTAAAACCATGTCTGAGACATGGCATCAG---CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATT-ATA--AGAGCC
* * * **
79919117 AGTGTAATACCATGTCTGGGACATGGCATCAGCCTCGA-TATGTGAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCAC-ATTATAAGAGCC
79919165 AGTGTAAGACCATGTCT-AGGACATGGCATC
1 AGTGTAAGACCATGTCTGA-GACATGGCATC
79919195 GGTAATTTAC
Statistics
Matches: 220, Mismatches: 34, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
45 8 0.04
46 5 0.02
47 2 0.01
48 196 0.89
49 1 0.00
50 3 0.01
51 3 0.01
52 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCC
Found at i:79919028 original size:96 final size:95
Alignment explanation
Indices: 79918877--79919198 Score: 312
Period size: 96 Copynumber: 3.4 Consensus size: 95
79918867 TATGTGTGCT
* ** * *
79918877 AGTGTAAGACCATGTATGGGACATGGCATCAGCCACATT-ATA--AGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--GTATTGAGACGAGAGCTAGTGTAAGACCATG
* *
79918939 TTTGAGACATGGCATCGGCATTGATAGGTGAGCT
63 TCTGAGACATGGCATCGGCATTGATA-GTGAGCC
* * * * *
79918973 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACCATGTCT
* * *
79919038 GAGACATGACATCAGCCACATT-ATA-AGAGCC
66 GAGACATGGCATC-G--GCATTGATAGTGAGCC
* * * * *
79919069 AGTGTAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAATACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACCATGTCT
* * * *
79919134 GGGACATGGCATCAGCCTCGATATGTGAGCC
66 GAGACATGGCATCGGCATTGATA-GTGAGCC
*
79919165 AGTGTAAGACCATGTCTAGGACATGGCATCGGTA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTA
79919199 ATTTACCCTC
Statistics
Matches: 183, Mismatches: 34, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
93 4 0.02
94 6 0.03
95 1 0.01
96 164 0.90
97 1 0.01
98 3 0.02
99 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACCATGTCT
GAGACATGGCATCGGCATTGATAGTGAGCC
Found at i:79919129 original size:144 final size:144
Alignment explanation
Indices: 79918864--79919194 Score: 502
Period size: 144 Copynumber: 2.3 Consensus size: 144
79918854 GACATTTGGG
* *
79918864 TGATATGTGTGCTAGTGTAAGACCATGTATGGGACATGGCATCAGCCACATTATAAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCCAGTG
* * * * * *
79918929 TAAGACCATGTTTGAGACATGGCATCGGCATTGATAGGTGAGCTAGTGTAAGACCATGTCTGGGA
66 TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
* **
79918994 CATGGCATCGGTGT
131 CATGGCATCAGCCT
*
79919008 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGACATCAGCCACATTATAAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCCAGTG
*
79919073 TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAATACCATGTCTGGGA
66 TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
79919138 CATGGCATCAGCCT
131 CATGGCATCAGCCT
* * *
79919152 CGATATGTGAGCCAGTGTAAGACCATGTCT-AGGACATGGCATC
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGA-GACATGGCATC
79919195 GGTAATTTAC
Statistics
Matches: 169, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
143 1 0.01
144 168 0.99
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (144 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCCAGTG
TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
CATGGCATCAGCCT
Found at i:79928607 original size:9 final size:11
Alignment explanation
Indices: 79928574--79928603 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
79928564 AATGTCACGA
*
79928574 TATATATAATT
1 TATATATAAGT
79928585 TATATATAAGT
1 TATATATAAGT
79928596 TATATATA
1 TATATATA
79928604 TTATGTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
TATATATAAGT
Found at i:79931411 original size:98 final size:95
Alignment explanation
Indices: 79931218--79931532 Score: 300
Period size: 94 Copynumber: 3.3 Consensus size: 95
79931208 ACGCCGACGC
* * * * *
79931218 CATGTCCCAGACATGGTCTTACACTGGCTAGTACATC-AAAT-TCGATGCCATGTCCCAGATAGG
1 CATGTCCCAGGCAT-GTCTTACACTAGCT-CT-CATCTTAATGTCGATGCCATGTCCCAGACAGG
*
79931281 TCTTACACT-GACTT-TCATATATCAAGGCCGATG
63 TCTTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * ** * *
79931314 CCATGTCCCAGGCAGGTCTTATACTGGCTCTCATCTATCGGTGTCGATGCCACGTCCCAGCCAGG
1 -CATGTCCCAGGCATGTCTTACACTAGCTCTCATCT-T-AATGTCGATGCCATGTCCCAGACAGG
* *
79931379 TCTTACACTAGCTTGTATATCTCGAGGTCGATG
63 TCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * * * *
79931412 CATG-CCCTGGACATGTCTTACACTAGCTCTCGTCTTAATGCCAAT-ACATGTCCCAGACATGTC
1 CATGTCCCAGG-CATGTCTTACACTAGCTCTCATCTTAATGTCGATGCCATGTCCCAGACAGGTC
*
79931475 TTACACTAGCTAGTATATCTCAAGGCCGATG
65 TTACACTAGCTTGTATATCTCAAGGCCGATG
*
79931506 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGGCATGTCTTACACTAGC
79931533 ACACATATCA
Statistics
Matches: 179, Mismatches: 31, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
94 66 0.37
95 10 0.06
96 19 0.11
97 37 0.21
98 45 0.25
99 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (95 bp):
CATGTCCCAGGCATGTCTTACACTAGCTCTCATCTTAATGTCGATGCCATGTCCCAGACAGGTCT
TACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:79931433 original size:48 final size:48
Alignment explanation
Indices: 79931218--79931532 Score: 198
Period size: 49 Copynumber: 6.6 Consensus size: 48
79931208 ACGCCGACGC
* * * ***
79931218 CATGTCCCAGACATGGTCTTACACTGGCTAGTACA--TCAAATTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * *
79931265 CCATGTCCCAGATAGGTCTTACACT-GACTT-TCATATATCAAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * * * * * * *
79931314 CCATGTCCCAGGCAGGTCTTATACTGGCTCT-CATCTATC-GGTGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCAAG-GCCGATG
* * * * *
79931363 CCACGTCCCAGCCAGGTCTTACACTAGCTTGTATATCTCGAGGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * ** * * * *
79931412 CATG-CCCTGGACATGTCTTACACTAGC-TCT-CGTCTTAATGCCAATA
1 CATGTCCC-AGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
*
79931458 CATGTCCCAGACATGTCTTACACTAGCTAGTATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
79931506 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
79931533 ACACATATCA
Statistics
Matches: 210, Mismatches: 44, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
46 32 0.15
47 23 0.11
48 70 0.33
49 82 0.39
50 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:79931480 original size:46 final size:48
Alignment explanation
Indices: 79931367--79931532 Score: 149
Period size: 48 Copynumber: 3.5 Consensus size: 48
79931357 TCGATGCCAC
* * ** * * * * *
79931367 GTCCCAGCCAGGTCTTACACTAGCTTGTATATCTCGAGGTCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
* * * *
79931415 G-CCCTGGACATGTCTTACACTAGCT-CT-CGTCTTAATGCCAATACAT
1 GTCCC-AGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
* * * *
79931461 GTCCCAGACATGTCTTACACTAGCTAGTATATCTCAAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
79931509 GTCCCAGACATGTCTTACACTAGC
1 GTCCCAGACATGTCTTACACTAGC
79931533 ACACATATCA
Statistics
Matches: 94, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
46 31 0.33
47 8 0.09
48 55 0.59
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
Found at i:79934847 original size:45 final size:45
Alignment explanation
Indices: 79934797--79934912 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
79934787 TAGGAATTTT
* ** *
79934797 GAAATCCGAGCTCATTGAGTTGGTCTGAGTTTATGATATATGTGA
1 GAAATCCGAGCTCGTTGAGTTGGTCCAAGTTTATGATATAAGTGA
* * * * *
79934842 GAAATCCAAACTTGTTAAGTTGGTCCAAGTTTGTGATATAAGTGA
1 GAAATCCGAGCTCGTTGAGTTGGTCCAAGTTTATGATATAAGTGA
*
79934887 -AGCATCCGAGCTCGTTGAGTTGGTCC
1 GA-AATCCGAGCTCGTTGAGTTGGTCC
79934913 GAGCTCGTTG
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
44 1 0.02
45 55 0.98
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (45 bp):
GAAATCCGAGCTCGTTGAGTTGGTCCAAGTTTATGATATAAGTGA
Found at i:79934915 original size:19 final size:19
Alignment explanation
Indices: 79934891--79934931 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
79934881 AAGTGAAGCA
79934891 TCCGAGCTCGTTGAGTTGG
1 TCCGAGCTCGTTGAGTTGG
79934910 TCCGAGCTCGTTGAGTTGG
1 TCCGAGCTCGTTGAGTTGG
79934929 TCC
1 TCC
79934932 AAGTTCATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.10, C:0.24, G:0.34, T:0.32
Consensus pattern (19 bp):
TCCGAGCTCGTTGAGTTGG
Found at i:79937899 original size:48 final size:48
Alignment explanation
Indices: 79937849--79938369 Score: 922
Period size: 48 Copynumber: 10.9 Consensus size: 48
79937839 ACATCTCCTA
* *
79937849 CATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATA
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
79937897 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
79937945 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
79937993 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
79938041 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
79938089 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-T
* * * * *
79938138 -ATATTTCACATTAGCAATTCAGCTTTACAACATATACATATCTCATA
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
* *
79938185 CATATTTCACA-TTGCCATTCGGCTTTACCACACATACATATCTCATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-T
79938233 -ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
79938280 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
79938328 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
79938370 ATAATTTATC
Statistics
Matches: 453, Mismatches: 15, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
47 41 0.09
48 411 0.91
49 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
Found at i:79949089 original size:17 final size:17
Alignment explanation
Indices: 79949067--79949105 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
79949057 GTGTCATTGA
79949067 GTTAGTATTAAAGTTTC
1 GTTAGTATTAAAGTTTC
79949084 GTTAGTATTAAAGTTTC
1 GTTAGTATTAAAGTTTC
79949101 GTTAG
1 GTTAG
79949106 GAAATTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.46
Consensus pattern (17 bp):
GTTAGTATTAAAGTTTC
Found at i:79951355 original size:37 final size:37
Alignment explanation
Indices: 79951296--79951394 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 37
79951286 ACTGGTATAT
* * * *
79951296 ATATATTGAAAGGTGTCTTGGAAATGATATTTAATTG
1 ATATATTGAAAAGTGACATGGAAATGATATTTAATTA
* *
79951333 ATATATTGAAATGTGACATGGAAATGATATTTATTTA
1 ATATATTGAAAAGTGACATGGAAATGATATTTAATTA
* *
79951370 ATATATTAAAAAGTGACATGTAAAT
1 ATATATTGAAAAGTGACATGGAAAT
79951395 ATGTGATTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.38
Consensus pattern (37 bp):
ATATATTGAAAAGTGACATGGAAATGATATTTAATTA
Found at i:79955420 original size:39 final size:39
Alignment explanation
Indices: 79955303--79955512 Score: 341
Period size: 39 Copynumber: 5.3 Consensus size: 39
79955293 GCTCCTCGTT
* *
79955303 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTATCTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
* * *
79955343 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
79955383 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
79955422 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
79955461 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
79955500 CAAATGCCTTCGG
1 CAAATGCCTTCGG
79955513 ATCTTAGTCC
Statistics
Matches: 163, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 113 0.69
40 48 0.29
41 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:79955548 original size:78 final size:80
Alignment explanation
Indices: 79955303--79955564 Score: 314
Period size: 78 Copynumber: 3.3 Consensus size: 80
79955293 GCTCCTCGTT
* * *
79955303 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTATCTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGACTTAGCCCG
79955367 GAT--TTAGTAAC-TCGCA
64 GATAATTA-T-ACTTCGCA
*
79955383 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
79955446 -AATTAGTA-TCTCGCA
66 TAATTA-TACT-TCGCA
*
79955461 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGA-CTTAGCCCGG
*
79955525 ATAATT-TCACTTAGCA
65 ATAATTAT-ACTTCGCA
79955541 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79955565 CATCATTCAA
Statistics
Matches: 164, Mismatches: 7, Indels: 23
0.85 0.04 0.12
Matches are distributed among these distances:
77 1 0.01
78 82 0.50
79 55 0.34
80 21 0.13
81 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
TAATTATACTTCGCA
Found at i:79960066 original size:19 final size:19
Alignment explanation
Indices: 79960042--79960082 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
79960032 TGTCTATATA
79960042 TATATGAACATATGATAAG
1 TATATGAACATATGATAAG
79960061 TATATGAACATATGATAAG
1 TATATGAACATATGATAAG
79960080 TAT
1 TAT
79960083 GGTGAGGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.34
Consensus pattern (19 bp):
TATATGAACATATGATAAG
Found at i:79968490 original size:27 final size:27
Alignment explanation
Indices: 79968460--79968513 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
79968450 CGACTGGTGT
79968460 GTTGCAGCACAAGGGGACTTATTCCCC
1 GTTGCAGCACAAGGGGACTTATTCCCC
79968487 GTTGCAGCACAAGGGGACTTATTCCCC
1 GTTGCAGCACAAGGGGACTTATTCCCC
79968514 TTTGAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (27 bp):
GTTGCAGCACAAGGGGACTTATTCCCC
Found at i:79977822 original size:13 final size:13
Alignment explanation
Indices: 79977804--79977829 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79977794 CCCGGATAAT
79977804 TGAATTATTGAAG
1 TGAATTATTGAAG
79977817 TGAATTATTGAAG
1 TGAATTATTGAAG
79977830 ATGTGAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
TGAATTATTGAAG
Found at i:79982225 original size:20 final size:20
Alignment explanation
Indices: 79982200--79982240 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
79982190 CTTTATATAT
79982200 TTTTTAGAATTTTTTTAAAA
1 TTTTTAGAATTTTTTTAAAA
* *
79982220 TTTTTATATTTTTTTTAAAA
1 TTTTTAGAATTTTTTTAAAA
79982240 T
1 T
79982241 ATAAATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTTAGAATTTTTTTAAAA
Found at i:79982260 original size:22 final size:20
Alignment explanation
Indices: 79982232--79982277 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
79982222 TTTATATTTT
79982232 TTTTAAAATATAAATTTTGGAA
1 TTTTAAAA-AT-AATTTTGGAA
* *
79982254 TTTTAAAAATTATTTTGTAA
1 TTTTAAAAATAATTTTGGAA
79982274 TTTT
1 TTTT
79982278 TGTTGAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 2 0.09
22 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (20 bp):
TTTTAAAAATAATTTTGGAA
Found at i:79982765 original size:19 final size:19
Alignment explanation
Indices: 79982738--79982774 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
79982728 GTTTATTTAT
*
79982738 GTCATTCTTATTAAAAATG
1 GTCACTCTTATTAAAAATG
*
79982757 GTCACTCTTCTTAAAAAT
1 GTCACTCTTATTAAAAAT
79982775 TCTAATAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (19 bp):
GTCACTCTTATTAAAAATG
Found at i:79983271 original size:38 final size:38
Alignment explanation
Indices: 79983220--79983295 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
79983210 TATTATCCTC
79983220 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
1 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
79983258 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
1 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
79983296 CAATCGGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.55, C:0.24, G:0.05, T:0.16
Consensus pattern (38 bp):
AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
Found at i:79985531 original size:29 final size:27
Alignment explanation
Indices: 79985465--79985531 Score: 71
Period size: 31 Copynumber: 2.3 Consensus size: 27
79985455 GAGTTTCACG
* *
79985465 TGTATAATTGCACCAAATTAAAGTTTA
1 TGTATAATTGCACCAAATCAAAGTTCA
*
79985492 TGTATAGAATTGCACATTAAATCAAAGTTCA
1 TGTAT--AATTGCAC--CAAATCAAAGTTCA
79985523 TGTATAATT
1 TGTATAATT
79985532 TTGAGATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 5 0.15
29 12 0.36
31 16 0.48
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.37
Consensus pattern (27 bp):
TGTATAATTGCACCAAATCAAAGTTCA
Found at i:79987822 original size:15 final size:15
Alignment explanation
Indices: 79987802--79987832 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
79987792 AAGGGTACAG
79987802 AGAGGAAAAAAGGAA
1 AGAGGAAAAAAGGAA
79987817 AGAGGAAAAAAGGAA
1 AGAGGAAAAAAGGAA
79987832 A
1 A
79987833 TTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (15 bp):
AGAGGAAAAAAGGAA
Found at i:79989528 original size:21 final size:21
Alignment explanation
Indices: 79989502--79989549 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
79989492 ATTGGGTGGA
79989502 TCAGCTCTCAAAAGCTTCTGT
1 TCAGCTCTCAAAAGCTTCTGT
* *
79989523 TCAGCTCTTATAAGCTTCTGT
1 TCAGCTCTCAAAAGCTTCTGT
*
79989544 TTAGCT
1 TCAGCT
79989550 TTCGAGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (21 bp):
TCAGCTCTCAAAAGCTTCTGT
Found at i:79990492 original size:25 final size:25
Alignment explanation
Indices: 79990458--79990507 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
79990448 TGCATACAAG
79990458 TTAGGCTATTACATGGCCTGACATA
1 TTAGGCTATTACATGGCCTGACATA
*
79990483 TTAGGCTATTACATGGCCTGGCATA
1 TTAGGCTATTACATGGCCTGACATA
79990508 CTGGCGTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (25 bp):
TTAGGCTATTACATGGCCTGACATA
Found at i:79992695 original size:25 final size:22
Alignment explanation
Indices: 79992652--79992697 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
79992642 AGGTTAAATT
*
79992652 AGTAAATTAATAAATAAGTTAA
1 AGTAAATTAATAAAAAAGTTAA
79992674 AGTAAATTGACATAAACAAAGTTA
1 AGTAAATT-A-ATAAA-AAAGTTA
79992698 TCATTATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 8 0.40
23 1 0.05
24 5 0.25
25 6 0.30
ACGTcount: A:0.57, C:0.04, G:0.11, T:0.28
Consensus pattern (22 bp):
AGTAAATTAATAAAAAAGTTAA
Found at i:79993187 original size:8 final size:8
Alignment explanation
Indices: 79993173--79993221 Score: 71
Period size: 8 Copynumber: 6.1 Consensus size: 8
79993163 AATATTAGGG
79993173 GTAAAATT
1 GTAAAATT
*
79993181 ATAAAATT
1 GTAAAATT
79993189 GTAAAATT
1 GTAAAATT
79993197 GTAAAATT
1 GTAAAATT
*
79993205 GTAAAACT
1 GTAAAATT
*
79993213 ATAAAATT
1 GTAAAATT
79993221 G
1 G
79993222 CCATAATATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.53, C:0.02, G:0.10, T:0.35
Consensus pattern (8 bp):
GTAAAATT
Found at i:79993194 original size:16 final size:16
Alignment explanation
Indices: 79993173--79993221 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
79993163 AATATTAGGG
79993173 GTAAAATTATAAAATT
1 GTAAAATTATAAAATT
*
79993189 GTAAAATTGTAAAATT
1 GTAAAATTATAAAATT
*
79993205 GTAAAACTATAAAATT
1 GTAAAATTATAAAATT
79993221 G
1 G
79993222 CCATAATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.53, C:0.02, G:0.10, T:0.35
Consensus pattern (16 bp):
GTAAAATTATAAAATT
Found at i:79996307 original size:48 final size:48
Alignment explanation
Indices: 79996075--79996307 Score: 234
Period size: 48 Copynumber: 4.9 Consensus size: 48
79996065 TTTGGGTGAT
* * * ** *
79996075 ATGTGTGCCAGTGTAAGACCATGTCTGGGATATGGCATCGACATTGAT
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAC
* * * * *
79996123 ATGTGTGCTAGAGAAAGACCATGTCTGGGACATGGCATTGGCCA-CAAC
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCAAC
* * * * *
79996171 ATGAGAGCCAGTGTAAAACCATGTCTGGGATATGGCATCGGCATTAAG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAC
* * * * *
79996219 ACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAC
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAC
* * *
79996267 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGAATCGG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
79996308 TAATTCACCC
Statistics
Matches: 150, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
47 2 0.01
48 146 0.97
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAC
Found at i:79996307 original size:96 final size:96
Alignment explanation
Indices: 79996075--79996290 Score: 306
Period size: 96 Copynumber: 2.2 Consensus size: 96
79996065 TTTGGGTGAT
* * * * * * *
79996075 ATGTGTGCCAGTGTAAGACCATGTCTGGGATATGGCATCGACATTGATATGTGTGCTAGAGAAAG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTAAGACGAGAGCTAGAGAAAG
*
79996140 ACCATGTCTGGGACATGGCATTGGCCACAAC
66 ACCATGTCTGGGACATGGCATCGGCCACAAC
* * * *
79996171 ATGAGAGCCAGTGTAAAACCATGTCTGGGATATGGCATCGGCATTAAGACGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTAAGACGAGAGCTAGAGAAAG
* *
79996236 ACCATGTCTGGGACATGGCATCGGCCTCGAC
66 ACCATGTCTGGGACATGGCATCGGCCACAAC
79996267 ATGTGAGCCAGTGTAAGACCATGT
1 ATGTGAGCCAGTGTAAGACCATGT
79996291 TTGGAACATG
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 104 1.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTAAGACGAGAGCTAGAGAAAG
ACCATGTCTGGGACATGGCATCGGCCACAAC
Found at i:80019669 original size:43 final size:43
Alignment explanation
Indices: 80019587--80019688 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
80019577 TGGGATTCAG
*
80019587 CCCAGACGAGTAATCCATTAATCTCAGTATGGAATGGATTTAA
1 CCCAGACGAGTAATCCATTAATCTCAGTATAGAATGGATTTAA
* * * * *
80019630 CCCAGATGGGTAATCCATTGATTTCAGTATAAGAA-GGATTTAT
1 CCCAGACGAGTAATCCATTAATCTCAGTAT-AGAATGGATTTAA
*
80019673 CCCGGACGAGTAATCC
1 CCCAGACGAGTAATCC
80019689 CGAGTTGAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 46 0.94
44 3 0.06
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
CCCAGACGAGTAATCCATTAATCTCAGTATAGAATGGATTTAA
Found at i:80025876 original size:21 final size:21
Alignment explanation
Indices: 80025851--80025897 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
80025841 GGACACGGTC
*
80025851 TGGCCATACGGGCGTGTGGTA
1 TGGCCATACGGGCGTGTAGTA
80025872 TGGCCATACGGGCGTGTAGTA
1 TGGCCATACGGGCGTGTAGTA
*
80025893 CGGCC
1 TGGCC
80025898 GTGTGACCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.23, G:0.40, T:0.21
Consensus pattern (21 bp):
TGGCCATACGGGCGTGTAGTA
Found at i:80029617 original size:16 final size:16
Alignment explanation
Indices: 80029596--80029631 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
80029586 ATTTACAAAG
80029596 CTTTAAAGCTTACCCC
1 CTTTAAAGCTTACCCC
*
80029612 CTTTAAAGCTTACCCT
1 CTTTAAAGCTTACCCC
80029628 CTTT
1 CTTT
80029632 CCTTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.33, G:0.06, T:0.39
Consensus pattern (16 bp):
CTTTAAAGCTTACCCC
Found at i:80031166 original size:20 final size:20
Alignment explanation
Indices: 80031141--80031186 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
80031131 ATTGTGTCTT
80031141 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
80031161 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
80031180 GCCCATA
1 GCCCATA
80031187 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:80031195 original size:19 final size:20
Alignment explanation
Indices: 80031153--80031196 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
80031143 CCATATTAAC
** *
80031153 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
80031173 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
80031192 ACAGT
1 ACAGT
80031197 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:80036160 original size:53 final size:53
Alignment explanation
Indices: 80035994--80036189 Score: 212
Period size: 53 Copynumber: 3.6 Consensus size: 53
80035984 AAGGTACCAA
* * * *
80035994 GTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTTATAAGGCAAGGAAATCAT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGCAAGGATATCAT
* * * * * * **
80036048 GTAAGACCATGTCAAGACATCGCATTGATAAACTACGATAAGGCAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAGGATATCAT
* * * *
80036103 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATATCAC
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAGGATATCAT
*
80036156 GTAAGACCATATCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
80036190 TAAAAAGGAA
Statistics
Matches: 114, Mismatches: 26, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
53 44 0.39
54 30 0.26
55 40 0.35
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAGGATATCAT
Found at i:80041838 original size:28 final size:29
Alignment explanation
Indices: 80041772--80041838 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
80041762 TGTGCAAGTT
*
80041772 TAAGTGTGCGAGTTTGATTATGTAAGCAC
1 TAAGTGTGCGAGTTTGATTATATAAGCAC
80041801 TAAGTGTGCGAGTTTGATTATATAA-CAC
1 TAAGTGTGCGAGTTTGATTATATAAGCAC
80041829 TAAGTGTGCG
1 TAAGTGTGCG
80041839 GACTTACTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 13 0.35
29 24 0.65
ACGTcount: A:0.28, C:0.10, G:0.27, T:0.34
Consensus pattern (29 bp):
TAAGTGTGCGAGTTTGATTATATAAGCAC
Found at i:80056905 original size:6 final size:6
Alignment explanation
Indices: 80056887--80056968 Score: 53
Period size: 6 Copynumber: 13.3 Consensus size: 6
80056877 AAGAAACATT
* * *
80056887 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
80056936 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
80056969 TAATATCAGG
Statistics
Matches: 58, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
5 4 0.07
6 46 0.79
7 6 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:80056929 original size:25 final size:25
Alignment explanation
Indices: 80056901--80056970 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
80056891 GAACTAGAAT
* *
80056901 CAGAATCAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTAA
* *
80056926 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
*
80056951 CAGAATCAAAATCAGAATTA
1 CAGAATCAGAATCAGAATTA
80056971 ATATCAGGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTAA
Found at i:80056964 original size:31 final size:32
Alignment explanation
Indices: 80056929--80057000 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 32
80056919 TAGGTGACAG
*
80056929 AATCAGAATCAGTATCAGGTAACAGAATC-AA
1 AATCAGAATCAATATCAGGTAACAGAATCAAA
*
80056960 AATCAGAATTAATATCAGGTAACAGAATCAAA
1 AATCAGAATCAATATCAGGTAACAGAATCAAA
80056992 AATCAGAAT
1 AATCAGAAT
80057001 GTGAATACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 27 0.71
32 11 0.29
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.21
Consensus pattern (32 bp):
AATCAGAATCAATATCAGGTAACAGAATCAAA
Found at i:80057236 original size:27 final size:27
Alignment explanation
Indices: 80057137--80057238 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
80057127 GCTCAGTTAT
* * *
80057137 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
* *
80057164 CAGATATTGTGGCAGTGACACCAG-AA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
80057190 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAGAAA
* *
80057218 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
80057239 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:80057433 original size:22 final size:22
Alignment explanation
Indices: 80057408--80057462 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
80057398 TAGCACACAA
* *
80057408 CCATAATCAGGTTGGCACAGAG
1 CCATAATCAGGTTGACACAAAG
*
80057430 CCAT-ATGTAGGTTGACACAAAG
1 CCATAAT-CAGGTTGACACAAAG
80057452 CCATAATCAGG
1 CCATAATCAGG
80057463 AGGCTTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 2 0.07
22 23 0.85
23 2 0.07
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (22 bp):
CCATAATCAGGTTGACACAAAG
Found at i:80057945 original size:27 final size:27
Alignment explanation
Indices: 80057889--80058190 Score: 338
Period size: 27 Copynumber: 11.2 Consensus size: 27
80057879 GGGCAAAATG
* * * * *
80057889 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
80057915 GTAATTCCACCCTACAAGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
80057942 GTAATTCTACCTTACAGGGGTA-TTCGG
1 GTAATTCTACCCTACAGGGGTATTTC-A
*
80057969 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
80057996 GTAATTCTACCCTATAGCGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
80058023 GTATTTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
80058050 ATATTTCTACCCTACAGGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
80058077 GTAATTCCACCTTACAGGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
**
80058104 GTAATTCTACCCTACAGGGGTATTTGG
1 GTAATTCTACCCTACAGGGGTATTTCA
80058131 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
80058158 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
80058185 GTAATT
1 GTAATT
80058191 TTGTAAATCG
Statistics
Matches: 232, Mismatches: 41, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
26 15 0.06
27 214 0.92
28 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:80058204 original size:27 final size:26
Alignment explanation
Indices: 80058174--80058263 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 26
80058164 CTACCCTACA
80058174 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTT-GGTAATTTTGTAAATCG
** *
80058201 AGGGTAAAATGGTAATTCTGTAAATC-
1 AGGGT-ATTTGGTAATTTTGTAAATCG
** *
80058227 AGGGGTACTTTGGTAATTTTACAAGTCG
1 A-GGGTA-TTTGGTAATTTTGTAAATCG
80058255 AGGGTATTT
1 AGGGTATTT
80058264 CAATAATTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
26 5 0.10
27 42 0.84
28 3 0.06
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.37
Consensus pattern (26 bp):
AGGGTATTTGGTAATTTTGTAAATCG
Found at i:80058270 original size:27 final size:28
Alignment explanation
Indices: 80058227--80058541 Score: 226
Period size: 27 Copynumber: 11.7 Consensus size: 28
80058217 TCTGTAAATC
* * *
80058227 AGGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
80058255 A-GGGTATTTCAATAA-TTTAC-AGGCTG
1 AGGGGTATTTTAGTAATTTTACAAGAC-G
* * *
80058281 A-GGGTATTTCAGTAATTTCACAAGTC-
1 AGGGGTATTTTAGTAATTTTACAAGACG
* *
80058307 AGGGGTATTTTGGTAATTTTACAA-ACT
1 AGGGGTATTTTAGTAATTTTACAAGACG
*
80058334 AGGGGTATTTT-GATAATTTTACAA-ACA
1 AGGGGTATTTTAG-TAATTTTACAAGACG
*
80058361 AGGGGTATTTTAGTAATTTTACAAG-CT
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
80058388 AGGGGTATTTTGGTAATTTTATAA-ACA
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
80058415 AAGGGTATTTTAGTAATTTTGCAA-ACC
1 AGGGGTATTTTAGTAATTTTACAAGACG
** * * * *
80058442 AATGGTATTTTGGTGATTTTATAA-ACC
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
80058469 AAGGGTATTTTAGTAATTTTATAA-ACC
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
80058496 AAGGGTATTTTGGTAATTTTACAAG-CC
1 AGGGGTATTTTAGTAATTTTACAAGACG
*
80058523 AGGGGTATTTTGGTAATTT
1 AGGGGTATTTTAGTAATTT
80058542 GGTAAACTAA
Statistics
Matches: 244, Mismatches: 33, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.01
26 23 0.09
27 213 0.87
28 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.39
Consensus pattern (28 bp):
AGGGGTATTTTAGTAATTTTACAAGACG
Found at i:80058352 original size:54 final size:53
Alignment explanation
Indices: 80058229--80058541 Score: 288
Period size: 54 Copynumber: 5.8 Consensus size: 53
80058219 TGTAAATCAG
* * * * ** **
80058229 GGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAA-TTTACAGGCTGA
1 GGGTATTTTGGTAATTTTACAA-ACAG-GGGTATTTTAGTAATTTTACAAACCAA
** * * * * *
80058282 GGGTATTTCAGTAATTTCACAAGTCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAA-ACAGGGGTATTTTAGTAATTTTACAAACCAA
* * * *
80058336 GGGTATTTTGATAATTTTACAAACAAGGGGTATTTTAGTAATTTTACAAGCTAG
1 GGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTAGTAATTTTACAAACCAA
* * *
80058390 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTGCAAACCAA
1 GGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTAGTAATTTTACAAACCAA
* * * * *
80058444 TGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTAGTAATTTTACAAACCAA
* *
80058498 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAA-ACAGGGGTATTTTAGTAATTT
80058542 GGTAAACTAA
Statistics
Matches: 220, Mismatches: 35, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
53 33 0.15
54 186 0.85
55 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACAGGGGTATTTTAGTAATTTTACAAACCAA
Found at i:80058393 original size:81 final size:81
Alignment explanation
Indices: 80058282--80058541 Score: 301
Period size: 81 Copynumber: 3.2 Consensus size: 81
80058272 TACAGGCTGA
* * * * *
80058282 GGGTATTTCAGTAATTTCACAAG-TCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GGGTATTTTAGTAATTTTACAAGCT-AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTG
80058346 ATAATTTTACAAACAAG
65 ATAATTTTACAAACAAG
80058363 GGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT-A
1 GGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGA
*
80058427 GTAATTTTGCAAACCAA-
66 -TAATTTTACAAA-CAAG
* * * * * * * * * *
80058444 TGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGA
* *
80058509 TAATTTTACAAGCCAG
66 TAATTTTACAAACAAG
*
80058525 GGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTT
80058542 GGTAAACTAA
Statistics
Matches: 153, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
80 3 0.02
81 146 0.95
82 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGA
TAATTTTACAAACAAG
Found at i:80067014 original size:33 final size:32
Alignment explanation
Indices: 80066977--80067089 Score: 111
Period size: 33 Copynumber: 3.4 Consensus size: 32
80066967 TACCTAAAAG
80066977 GTACAATTGGAAAAGGAAATGTACACTGTATGT
1 GTACAATT-GAAAAGGAAATGTACACTGTATGT
* * * *
80067010 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAA-TTGAAAAGGAAATGTACACTGTATGT
* * * *
80067043 GTATACTTGAAAAGGAAATGTACGCCT-TGTGT
1 GTACAATTGAAAAGGAAATGTAC-ACTGTATGT
80067075 GTACAATGTGAAAAG
1 GTACAAT-TGAAAAG
80067090 TGGTAGCTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
32 25 0.38
33 39 0.59
34 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (32 bp):
GTACAATTGAAAAGGAAATGTACACTGTATGT
Found at i:80067229 original size:31 final size:31
Alignment explanation
Indices: 80067082--80067229 Score: 183
Period size: 31 Copynumber: 4.8 Consensus size: 31
80067072 TGTGTACAAT
*
80067082 GTGAAAAGTGGTAGCTT-ATGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCA-GCTACCTAATCA
*
80067113 GTGAAAAGTGGTAGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
* * *
80067144 GTGAAAAGTAGTAGCTTAAGCTACC-AGATTA
1 GTGAAAAGTGGTAGCTTCAGCTACCTA-ATCA
* *
80067175 GTGAAAAGTGGTAGCTCCAGCTACCTAATTA
1 GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
* *
80067206 GTGAATAGTGGTAGCTTCGGCTAC
1 GTGAAAAGTGGTAGCTTCAGCTAC
80067230 AAGTGACAAG
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
30 1 0.01
31 100 0.98
32 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
Found at i:80067229 original size:62 final size:62
Alignment explanation
Indices: 80067082--80067222 Score: 210
Period size: 62 Copynumber: 2.3 Consensus size: 62
80067072 TGTGTACAAT
* * * *
80067082 GTGAAAAGTGGTAGCTTATGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTAAGCTACCAGATCAGTGAAAAGTGGTAGCTCCAGCTACCTAATCA
* * *
80067144 GTGAAAAGTAGTAGCTTAAGCTACCAGATTAGTGAAAAGTGGTAGCTCCAGCTACCTAATTA
1 GTGAAAAGTGGTAGCTTAAGCTACCAGATCAGTGAAAAGTGGTAGCTCCAGCTACCTAATCA
*
80067206 GTGAATAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
80067223 CGGCTACAAG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (62 bp):
GTGAAAAGTGGTAGCTTAAGCTACCAGATCAGTGAAAAGTGGTAGCTCCAGCTACCTAATCA
Found at i:80067350 original size:27 final size:27
Alignment explanation
Indices: 80067319--80067383 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
80067309 TAGTTGAACT
*
80067319 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
80067346 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
80067373 ATAGCAAAGTG
1 ATGGCAAAGTG
80067384 TTCAGTGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:80071457 original size:27 final size:27
Alignment explanation
Indices: 80071419--80071472 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
80071409 ATAGATTAGT
80071419 TAGCACATAAAGCATACGTGTTATCAA
1 TAGCACATAAAGCATACGTGTTATCAA
80071446 TAGCACATAAAGCATACGTGTTATCAA
1 TAGCACATAAAGCATACGTGTTATCAA
80071473 ATATAATCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (27 bp):
TAGCACATAAAGCATACGTGTTATCAA
Found at i:80086576 original size:46 final size:46
Alignment explanation
Indices: 80086425--80086599 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
80086415 GCATTATGAG
* * **
80086425 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGAATCGAGACG-A
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACGTA
* * * *
80086472 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGTA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTA
* * * *
80086519 AGCCTGCGTAAGACATGTCTGGGATATGCATTGG-CTACGAGATG-A
1 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCT-CGAGACGTA
*
80086564 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATTG
1 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTG
80086600 ACATGAGATA
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
45 3 0.03
46 57 0.55
47 27 0.26
48 17 0.16
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTA
Found at i:80086608 original size:47 final size:47
Alignment explanation
Indices: 80086428--80086648 Score: 145
Period size: 47 Copynumber: 4.7 Consensus size: 47
80086418 TTATGAGAGC
*
80086428 CAGTGTAAGACCATGTTTGGGACATGGCATCGGA-ATCGAGACG--AGT
1 CAGTGTAAGA-CATGTCTGGGACATGGCATCGGACAT-GAGACGTAAGT
* * *
80086474 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGAGACGTAAGC
1 -C-AGTGTAAGACATGTCTGGGACATGGCATCGGACATGAGACGTAAGT
* * * * * *
80086522 CTGCGTAAGACATGTCTGGGATAT-GCATTGG-CTACGAGATG-ATAGT
1 CAGTGTAAGACATGTCTGGGACATGGCATCGGAC-ATGAGACGTA-AGT
* ** *
80086568 CAGTGTAAGACCATGTCTGGGACATGGCAT-TGACATGAGATATGAG-
1 CAGTGTAAGA-CATGTCTGGGACATGGCATCGGACATGAGACGTAAGT
* * *
80086614 CTAGTGTAAGATCGTGTCTAGGACATGGCACCGGA
1 C-AGTGTAAGA-CATGTCTGGGACATGGCATCGGA
80086649 AACTTACTCA
Statistics
Matches: 138, Mismatches: 24, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.01
46 55 0.40
47 63 0.46
48 18 0.13
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACATGTCTGGGACATGGCATCGGACATGAGACGTAAGT
Found at i:80087841 original size:21 final size:22
Alignment explanation
Indices: 80087801--80087841 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
80087791 TCAAATTGGT
80087801 CACACGGGCGTGTCGCCCCTCC
1 CACACGGGCGTGTCGCCCCTCC
*
80087823 CACACTGGCGTGT-GCCCCT
1 CACACGGGCGTGTCGCCCCT
80087842 ATGCCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.10, C:0.46, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCGTGTCGCCCCTCC
Found at i:80089447 original size:16 final size:16
Alignment explanation
Indices: 80089428--80089458 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80089418 CTTCTTCACT
80089428 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
80089444 TACTTACTTACTTAA
1 TACTCACTTACTTAA
80089459 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:80089464 original size:20 final size:20
Alignment explanation
Indices: 80089425--80089464 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80089415 AAACTTCTTC
* *
80089425 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
80089445 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
80089465 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:80089778 original size:53 final size:54
Alignment explanation
Indices: 80089650--80089904 Score: 220
Period size: 55 Copynumber: 4.8 Consensus size: 54
80089640 ACGCGGGTAC
* * ** *
80089650 CTTACCATTGCCATGACTTTTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
80089699 CTTACCATTGCCATGTCTTGACATGGTCTTATAAGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
80089752 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
80089807 CTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* ** *
80089860 CCTTACCAATTGCTATGCCTTGGTATGATCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80089905 AAACCCTAAT
Statistics
Matches: 164, Mismatches: 31, Indels: 16
0.78 0.15 0.08
Matches are distributed among these distances:
49 35 0.21
50 1 0.01
52 2 0.01
53 47 0.29
54 10 0.06
55 67 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:80090059 original size:41 final size:41
Alignment explanation
Indices: 80090013--80090100 Score: 167
Period size: 41 Copynumber: 2.1 Consensus size: 41
80090003 TGAATAATTT
80090013 CATAAAATAAATATACACATGCTGGAAATTAACAAAATTAA
1 CATAAAATAAATATACACATGCTGGAAATTAACAAAATTAA
*
80090054 CATAAAATAAATATACGCATGCTGGAAATTAACAAAATTAA
1 CATAAAATAAATATACACATGCTGGAAATTAACAAAATTAA
80090095 CATAAA
1 CATAAA
80090101 TAATAGAATA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (41 bp):
CATAAAATAAATATACACATGCTGGAAATTAACAAAATTAA
Found at i:80091821 original size:34 final size:34
Alignment explanation
Indices: 80091762--80091827 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
80091752 GTTTTAGTTA
* *
80091762 GGGCCTTAGCCCAATACAGTAACAGTATCAGTGT
1 GGGCCTTAGCCCAATACAATAACAGTAACAGTGT
* * *
80091796 GGGCCTTAGCCCACTTCAATGACAGTAACAGT
1 GGGCCTTAGCCCAATACAATAACAGTAACAGT
80091828 ACAGTTATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (34 bp):
GGGCCTTAGCCCAATACAATAACAGTAACAGTGT
Found at i:80101343 original size:27 final size:26
Alignment explanation
Indices: 80101313--80101388 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 26
80101303 GTATACATGG
*
80101313 GGTAGTCTGCTAGGACAGTAAACACAA
1 GGTAGTCTGCTAGGACAATAAACAC-A
*
80101340 GGTAGTC--CATCGGAACAATAAACACA
1 GGTAGTCTGC-TAGG-ACAATAAACACA
* *
80101366 GGCTAGTCTGCCAGGACATTAAA
1 GG-TAGTCTGCTAGGACAATAAA
80101389 TATGGGATGA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
25 1 0.03
26 6 0.15
27 29 0.74
28 2 0.05
29 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
GGTAGTCTGCTAGGACAATAAACACA
Found at i:80101492 original size:27 final size:27
Alignment explanation
Indices: 80101461--80101519 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
80101451 ATTAAGCATG
* *
80101461 AGGTAGTCCACTAGGACATTAAATACA
1 AGGTAGTCCACCAGGACATTAAACACA
* *
80101488 GGGTAGTCCGCCAGGACATTAAACACA
1 AGGTAGTCCACCAGGACATTAAACACA
80101515 AGGTA
1 AGGTA
80101520 AACTACCAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
AGGTAGTCCACCAGGACATTAAACACA
Found at i:80105833 original size:20 final size:20
Alignment explanation
Indices: 80105808--80105861 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
80105798 AGGGGCATAT
80105808 GCCCGTGTGGCCTGGGACAC
1 GCCCGTGTGGCCTGGGACAC
*
80105828 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAC
80105848 GCCCGTGTGGCCTG
1 GCCCGTGTGGCCTG
80105862 CCCATGGGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.07, C:0.33, G:0.41, T:0.19
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGGACAC
Found at i:80106772 original size:52 final size:52
Alignment explanation
Indices: 80106643--80106805 Score: 177
Period size: 52 Copynumber: 3.1 Consensus size: 52
80106633 TCTTACACGG
* * *
80106643 ATCACATAACATACCGATGCCATATCTCAGATATGGTCTTATACGGAATCACATT
1 ATCACAT--CATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-T
* * * * *
80106698 ATCACATCATACCAATGCCATAGCCCTGCTATGGTATTATACGGGATCTCGA-
1 ATCACATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC-AT
**
80106750 ATCACATTGTACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGT-ACAT
1 ATCACATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA-TCACAT
80106802 ATCA
1 ATCA
80106806 TATCTTTTCC
Statistics
Matches: 90, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
51 1 0.01
52 45 0.50
53 36 0.40
54 1 0.01
55 7 0.08
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (52 bp):
ATCACATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACAT
Found at i:80111709 original size:3 final size:3
Alignment explanation
Indices: 80111701--80111731 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
80111691 CTTTCAATTC
80111701 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
80111732 AAACTTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:80120265 original size:69 final size:69
Alignment explanation
Indices: 80120154--80120286 Score: 239
Period size: 69 Copynumber: 1.9 Consensus size: 69
80120144 AAAAATAGAG
* * *
80120154 ATTTAGAACATATTAATCCGAAAATAATTAACCACCGTAAATCGCAGAATATGTACTAATATACC
1 ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATACC
80120219 AAAA
66 AAAA
80120223 ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATAC
1 ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATAC
80120287 TAAGTATCAG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.49, C:0.17, G:0.08, T:0.26
Consensus pattern (69 bp):
ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATACC
AAAA
Found at i:80122076 original size:31 final size:31
Alignment explanation
Indices: 80122029--80122102 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
80122019 AGTACACTTC
* * *
80122029 ATTTCAATGATTAAATTTCGTAATTTTTTTT
1 ATTTAAATAATTAAATTTCGTAATTTTTTTG
80122060 ATTTAAATAATTAAATTTCGTAATTTTTTTG
1 ATTTAAATAATTAAATTTCGTAATTTTTTTG
*
80122091 ATTTAATTAATT
1 ATTTAAATAATT
80122103 GATTTTTCGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (31 bp):
ATTTAAATAATTAAATTTCGTAATTTTTTTG
Found at i:80123041 original size:7 final size:8
Alignment explanation
Indices: 80123017--80123041 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
80123007 TATTTTAGTT
80123017 AAATTAAA
1 AAATTAAA
80123025 AAATTAAA
1 AAATTAAA
80123033 AAATTAAA
1 AAATTAAA
80123041 A
1 A
80123042 TCTTATTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATTAAA
Found at i:80123248 original size:11 final size:11
Alignment explanation
Indices: 80123234--80123269 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
80123224 TACTCTTTAG
80123234 AATTTTTTAAA
1 AATTTTTTAAA
*
80123245 AATTTTTTATA
1 AATTTTTTAAA
*
80123256 ATTTTTTTAAA
1 AATTTTTTAAA
80123267 AAT
1 AAT
80123270 AAATTTTGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
AATTTTTTAAA
Found at i:80123329 original size:20 final size:18
Alignment explanation
Indices: 80123270--80123333 Score: 67
Period size: 20 Copynumber: 3.4 Consensus size: 18
80123260 TTTTAAAAAT
*
80123270 AAATTTTGGAACTTTTATA
1 AAATTTT-GAATTTTTATA
80123289 AAATTTTGAATTTTTGA-A
1 AAATTTTGAATTTTT-ATA
*
80123307 AAATATGTTGAATTTTTTTA
1 AAAT-T-TTGAATTTTTATA
80123327 AAATTTT
1 AAATTTT
80123334 TAAAAATTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 14 0.36
19 10 0.26
20 15 0.38
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.52
Consensus pattern (18 bp):
AAATTTTGAATTTTTATA
Found at i:80125682 original size:27 final size:27
Alignment explanation
Indices: 80125639--80125820 Score: 195
Period size: 27 Copynumber: 6.7 Consensus size: 27
80125629 GAGTCCGCAC
* * *
80125639 ACTCAGCACACTCAGTGCTATATAATCA
1 ACTC-GCACACTTAGTGCTACATAGTCA
* *
80125667 ACTCGCACACTTAGTGCTACGTAATCA
1 ACTCGCACACTTAGTGCTACATAGTCA
*
80125694 AATCGCACACTTAGTGCTACATAGTCA
1 ACTCGCACACTTAGTGCTACATAGTCA
** *
80125721 ATCTCGCACACTTAGTGCCGCATGGTCA
1 A-CTCGCACACTTAGTGCTACATAGTCA
* *
80125749 ATTCGCACACTTAGTGC-ATCATATTCA
1 ACTCGCACACTTAGTGCTA-CATAGTCA
** *
80125776 TTTCGCACACTTAGTGCAACATAGTCA
1 ACTCGCACACTTAGTGCTACATAGTCA
*
80125803 AATCGCACACTTAGTGCT
1 ACTCGCACACTTAGTGCT
80125821 GTACAATTTA
Statistics
Matches: 132, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.79
28 28 0.21
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
ACTCGCACACTTAGTGCTACATAGTCA
Found at i:80125755 original size:82 final size:81
Alignment explanation
Indices: 80125664--80125819 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
80125654 TGCTATATAA
* * *
80125664 TCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAATCTCGC
1 TCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAA-ATCGC
80125728 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
80125746 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
80125811 ACTTAGTGC
66 ACTTAGTGC
80125820 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:80133605 original size:27 final size:27
Alignment explanation
Indices: 80133562--80133743 Score: 186
Period size: 27 Copynumber: 6.7 Consensus size: 27
80133552 GAGTCCGCAC
* * *
80133562 ACTCAGCACACTCAGTGCTATATAATCA
1 ACTC-GCACACTTAGTGCTACATAGTCA
* *
80133590 ACTCGCACACTTAGTGCTACGTAATCA
1 ACTCGCACACTTAGTGCTACATAGTCA
*
80133617 AATCGCACACTTAGTGCTACATAGTCA
1 ACTCGCACACTTAGTGCTACATAGTCA
** *
80133644 ATCTCGCACACTTAGTGCCGCATGGTCA
1 A-CTCGCACACTTAGTGCTACATAGTCA
* *
80133672 ATTCGCACACTTAGTGC-ATCATATTCA
1 ACTCGCACACTTAGTGCTA-CATAGTCA
** * *
80133699 TTTCGTACACTTAGTGCAACATAGTCA
1 ACTCGCACACTTAGTGCTACATAGTCA
*
80133726 AATCGCACACTTAGTGCT
1 ACTCGCACACTTAGTGCT
80133744 GTACAATTTA
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
27 102 0.78
28 28 0.22
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
ACTCGCACACTTAGTGCTACATAGTCA
Found at i:80133678 original size:82 final size:81
Alignment explanation
Indices: 80133587--80133742 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
80133577 TGCTATATAA
* * *
80133587 TCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAATCTCGC
1 TCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAA-ATCGC
80133651 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
80133669 TCAATTCGCACACTTAGTGCATCATATTCATTTCGTACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
80133734 ACTTAGTGC
66 ACTTAGTGC
80133743 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:80135766 original size:16 final size:16
Alignment explanation
Indices: 80135745--80135780 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
80135735 CTTATTTTTA
80135745 CATCAAGATTATGCAC
1 CATCAAGATTATGCAC
*
80135761 CATCAAGATTGTGCAC
1 CATCAAGATTATGCAC
80135777 CATC
1 CATC
80135781 TCCTTTACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (16 bp):
CATCAAGATTATGCAC
Found at i:80146892 original size:22 final size:25
Alignment explanation
Indices: 80146849--80146895 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
80146839 TATTATTTTA
80146849 ATTTAATTATATATATATTTTGGTT
1 ATTTAATTATATATATATTTTGGTT
*
80146874 ATTTTATTAT-TAT-TA-TTTGGTT
1 ATTTAATTATATATATATTTTGGTT
80146896 TTGGATTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 2 0.10
24 3 0.14
25 9 0.43
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.64
Consensus pattern (25 bp):
ATTTAATTATATATATATTTTGGTT
Found at i:80152837 original size:46 final size:46
Alignment explanation
Indices: 80152723--80152943 Score: 180
Period size: 48 Copynumber: 4.7 Consensus size: 46
80152713 CTATCAGTGT
* * *
80152723 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTT-GTATATCACGAGGT
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTCG-ATCTCA--AGGC
* *
80152772 CGATGCATGTCTCAGACATGTCTTACACTAGCTCTCGA-CTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TCGATCTCAAGGC
* ** *
80152818 CGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCAAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT--CGATCTCAAGGC
* * * * **
80152866 CGATGCATGTCCTAAACATGTCTTACATTGGCTCTC-ATGCT-GTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TCGAT-CTCAAGGC
* *
80152912 TGATGCATGTCCCGGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
80152944 ACACACGTCA
Statistics
Matches: 141, Mismatches: 24, Indels: 17
0.77 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 63 0.45
47 3 0.02
48 65 0.46
49 8 0.06
50 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTCGATCTCAAGGC
Found at i:80152841 original size:94 final size:94
Alignment explanation
Indices: 80152723--80152943 Score: 268
Period size: 94 Copynumber: 2.3 Consensus size: 94
80152713 CTATCAGTGT
* ** * *
80152723 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGTCGATGCATGT-CTCAG
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGTCGATGCATGTCCT-AA
80152787 ACATGTCTTACACTAGCTCTCGACT-CAAT-GC
64 ACATGTCTTACACTAGCTCTC-A-TGCAATGGC
* *
80152818 CGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCAAGGTCGATGCATGTCCTAAAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGTCGATGCATGTCCTAAAC
* * **
80152883 ATGTCTTACATTGGCTCTCATGCTGTGGC
66 ATGTCTTACACTAGCTCTCATGCAATGGC
* *
80152912 TGATGCATGTCCCGGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
80152944 ACACACGTCA
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
92 1 0.01
93 3 0.03
94 98 0.90
95 7 0.06
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGTCGATGCATGTCCTAAAC
ATGTCTTACACTAGCTCTCATGCAATGGC
Found at i:80177365 original size:9 final size:9
Alignment explanation
Indices: 80177351--80177376 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80177341 TGGAATCATA
80177351 GGAGGTGGG
1 GGAGGTGGG
80177360 GGAGGTGGG
1 GGAGGTGGG
80177369 GGAGGTGG
1 GGAGGTGG
80177377 AGTATTCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.77, T:0.12
Consensus pattern (9 bp):
GGAGGTGGG
Found at i:80177949 original size:21 final size:22
Alignment explanation
Indices: 80177923--80177964 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
80177913 CACTTGACAT
*
80177923 AGGGGC-ACACGCCTGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
80177944 AGGGGCAACACGCCCGTGTGG
1 AGGGGCAACACGCCCGTGTGG
80177965 CTCACATGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.26, G:0.45, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:80189232 original size:46 final size:45
Alignment explanation
Indices: 80189124--80189257 Score: 128
Period size: 46 Copynumber: 2.9 Consensus size: 45
80189114 GGTTTATCAA
* * *
80189124 TCATCTCG-TAGCCGGTGCATGTCCCGGACATGTCTTACACTGGCT
1 TCATCTCGATA-CCGATGCATGTCCCGGACATGTCTTACACTAGCG
* * ***
80189169 TACGTCTTGAGGTCGATGCATGTCCCGGACATGTCTTACACTAGCAG
1 T-CATCTCGATACCGATGCATGTCCCGGACATGTCTTACACTAGC-G
80189216 TCATCTCGATACCGATGCAATGTCCCAGG-CATGGTCTTACAC
1 TCATCTCGATACCGATGC-ATGTCCC-GGACAT-GTCTTACAC
80189258 AGGCTCTCAT
Statistics
Matches: 70, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 47 0.67
47 11 0.16
48 11 0.16
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.28
Consensus pattern (45 bp):
TCATCTCGATACCGATGCATGTCCCGGACATGTCTTACACTAGCG
Found at i:80193442 original size:27 final size:26
Alignment explanation
Indices: 80193387--80193444 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
80193377 TACATCTCAA
* *
80193387 AGGGGCATATCAGTCATTTACCATGT
1 AGGGGCATATCAATCATTTACAATGT
*
80193413 AGGGGCATTTCAATCATTTTACTAAT-T
1 AGGGGCATATCAATCA-TTTAC-AATGT
80193440 AGGGG
1 AGGGG
80193445 GTCTAGGTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 14 0.52
27 11 0.41
28 2 0.07
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
AGGGGCATATCAATCATTTACAATGT
Done.