Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 243 of 316
Found at i:80195513 original size:46 final size:46
Alignment explanation
Indices: 80195378--80195594 Score: 163
Period size: 46 Copynumber: 4.6 Consensus size: 46
80195368 TAGACAAGGT
* **
80195378 GCCGATGCCATGTCCCAGACACGGTCTTACACT-GACAATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAG-CTCTCATCTCG-AG
* * * * *
80195426 GCCGGTACCTGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAG
* * *
80195472 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * * *
80195518 GCCGATGCCATATCCCCGACATGGTTTTACACTAGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAG
* * *
80195566 GGCGGTGCATGTCTCAGACATGTCTTACA
1 GCCGATGCATGTCCCAGACATGTCTTACA
80195595 TTATCTCACA
Statistics
Matches: 136, Mismatches: 26, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.01
46 69 0.51
47 37 0.27
48 27 0.20
49 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:80202304 original size:47 final size:44
Alignment explanation
Indices: 80202188--80202365 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 44
80202178 ATGGGTAAAG
* * **
80202188 TGCCGATGCCATGTCCCAGACACGGTCTTACACT-GACTATCATCTTG
1 TGCCGATG-CATGTCCCAGACA-TGTCTTACACTAG-CTCTC-TCTAA
*
80202235 TGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TCT-AA
* *
80202281 TACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ATAA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCTCTAA
80202326 TGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 --T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
80202366 AGAAACAAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
45 19 0.17
46 36 0.32
47 36 0.32
48 23 0.20
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (44 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTAA
Found at i:80202361 original size:94 final size:93
Alignment explanation
Indices: 80202190--80202365 Score: 282
Period size: 93 Copynumber: 1.9 Consensus size: 93
80202180 GGGTAAAGTG
**
80202190 CCGATGCCATGTCCCAGACACGGTCTTACACTGACTATCATCTTGTGCCGATGCATGTCCCAAAC
1 CCGATGCCATGTCCCAGACACGGTCTTACACTGACTATCATAATGTGCCGATGCATGTCCCAAAC
80202255 ATGTCTTACACTAGCTCTCGTCTCAATA
66 ATGTCTTACACTAGCTCTCGTCTCAATA
* * *
80202283 CCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCATAATGTGGCCGATGCATGTCCCAG
1 CCGATGCCATGTCCCAGACACGGTCTTACACTGA-CTATCATAATGT-GCCGATGCATGTCCCAA
80202347 ACATGTCTTACACTAGCTC
64 ACATGTCTTACACTAGCTC
80202366 AGAAACAAAT
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
92 1 0.01
93 40 0.53
94 35 0.46
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACACGGTCTTACACTGACTATCATAATGTGCCGATGCATGTCCCAAAC
ATGTCTTACACTAGCTCTCGTCTCAATA
Found at i:80203427 original size:19 final size:19
Alignment explanation
Indices: 80203403--80203443 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
80203393 AACTTTTTAC
*
80203403 TTTATGCGATTTAGTCCTT
1 TTTATGCAATTTAGTCCTT
80203422 TTTATGCAATTTAGTCCTT
1 TTTATGCAATTTAGTCCTT
80203441 TTT
1 TTT
80203444 CGCAATTGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.15, G:0.12, T:0.56
Consensus pattern (19 bp):
TTTATGCAATTTAGTCCTT
Found at i:80203448 original size:18 final size:19
Alignment explanation
Indices: 80203411--80203450 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
80203401 ACTTTATGCG
*
80203411 ATTTAGTCCTTTTTATGCA
1 ATTTAGTCCTTTTTACGCA
80203430 ATTTAGTCCTTTTT-CGCA
1 ATTTAGTCCTTTTTACGCA
80203448 ATT
1 ATT
80203451 GGACTCACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (19 bp):
ATTTAGTCCTTTTTACGCA
Found at i:80204312 original size:13 final size:13
Alignment explanation
Indices: 80204294--80204318 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80204284 ATTCAGCCTC
80204294 CAAAGAACAAAAG
1 CAAAGAACAAAAG
80204307 CAAAGAACAAAA
1 CAAAGAACAAAA
80204319 ATGTTCACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.16, G:0.12, T:0.00
Consensus pattern (13 bp):
CAAAGAACAAAAG
Found at i:80208543 original size:28 final size:28
Alignment explanation
Indices: 80208503--80208580 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 28
80208493 TACATGCTTG
* *
80208503 TGGCCTACTAGGCCCAATCTCAT-TCATA
1 TGGCCCACTAGGCCCAATCACATCT-ATA
* *
80208531 TGGCCCATTAGGCCCAAATCACATCTATG
1 TGGCCCACTAGGCCC-AATCACATCTATA
*
80208560 TGGCCCACTAGGCCTAATCAC
1 TGGCCCACTAGGCCCAATCAC
80208581 TTTTACAGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
28 19 0.45
29 22 0.52
30 1 0.02
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (28 bp):
TGGCCCACTAGGCCCAATCACATCTATA
Found at i:80208564 original size:29 final size:28
Alignment explanation
Indices: 80208501--80208580 Score: 90
Period size: 28 Copynumber: 2.8 Consensus size: 28
80208491 CATACATGCT
* *
80208501 TGTGGCCTACTAGGCCCAATCTCATTCA
1 TGTGGCCCACTAGGCCCAATCACATTCA
* *
80208529 TATGGCCCATTAGGCCCAAATCACA-TCTA
1 TGTGGCCCACTAGGCCC-AATCACATTC-A
*
80208558 TGTGGCCCACTAGGCCTAATCAC
1 TGTGGCCCACTAGGCCCAATCAC
80208581 TTTTACAGTC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 22 0.51
29 21 0.49
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (28 bp):
TGTGGCCCACTAGGCCCAATCACATTCA
Found at i:80211943 original size:46 final size:46
Alignment explanation
Indices: 80211876--80212002 Score: 209
Period size: 46 Copynumber: 2.8 Consensus size: 46
80211866 TGTAACCTGC
* *
80211876 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGAGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCAGGAGTTCGCAT
* *
80211922 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCAGGAGTTCGCAT
*
80211968 CCATAAGTGAACTCGAACTCAACTCAACGAACTCA
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCA
80212003 ATACTCAAAT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.18
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCAGGAGTTCGCAT
Found at i:80214321 original size:56 final size:56
Alignment explanation
Indices: 80214235--80214354 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
80214225 ACAAGGGATG
80214235 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
80214291 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
80214347 ATGGGCAA
1 ATGGGCAA
80214355 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:80215581 original size:39 final size:40
Alignment explanation
Indices: 80215481--80215665 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
80215471 TCGAATGATG
* * * *
80215481 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTATGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
80215520 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTATG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
80215561 TCCGGGCTATG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
80215600 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
80215639 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTATGTCCCGAAGGCATTTG
80215666 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:80215687 original size:79 final size:79
Alignment explanation
Indices: 80215534--80215698 Score: 219
Period size: 79 Copynumber: 2.1 Consensus size: 79
80215524 GGACTAAGAT
* **
80215534 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTATGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTATGCCCGAAGGCATTGGAACGAGTTACTAA
*
80215599 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
*
80215613 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTATG-CCCGAAGGCATTGGAACGAGTTA-C
* *
80215676 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATC
80215692 CCGAAGG
1 CCGAAGG
80215699 TACGTGATTT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.66
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTATGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCAGGTTAAATC
Found at i:80221722 original size:56 final size:56
Alignment explanation
Indices: 80221636--80221755 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
80221626 ACAAGGGATG
80221636 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
80221692 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
80221748 ATGGGCAA
1 ATGGGCAA
80221756 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:80223019 original size:79 final size:81
Alignment explanation
Indices: 80222883--80223065 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
80222873 TCGAATGATG
* *
80222883 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
80222947 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
80222962 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
80223024 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
80223042 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80223066 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:80223081 original size:40 final size:40
Alignment explanation
Indices: 80222884--80223067 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
80222874 CGAATGATGT
* * * *
80222884 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
80222924 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
80222964 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80223002 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80223043 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80223068 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80223089 original size:79 final size:79
Alignment explanation
Indices: 80222936--80223100 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
80222926 GGACTAAGAT
* **
80222936 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
80223001 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
80223015 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
80223078 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
80223094 CCGAAGG
1 CCGAAGG
80223101 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:80229073 original size:37 final size:37
Alignment explanation
Indices: 80229023--80229101 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
80229013 TTATTACGAA
* *
80229023 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
80229060 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
80229097 GTCTT
1 GTCTT
80229102 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:80229298 original size:47 final size:47
Alignment explanation
Indices: 80229220--80229442 Score: 304
Period size: 47 Copynumber: 4.7 Consensus size: 47
80229210 CCCTTCGGGA
* * * * * * *
80229220 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80229267 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80229314 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80229361 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
80229408 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
80229443 AGAATCCTAA
Statistics
Matches: 157, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 1 0.01
47 156 0.99
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80233082 original size:42 final size:46
Alignment explanation
Indices: 80232985--80233170 Score: 158
Period size: 42 Copynumber: 4.2 Consensus size: 46
80232975 AGTCTCACGT
* * * * * *
80232985 CAATGTCATGTCCCAAACATGGTCTTATACGAAATCACGTATCAATG
1 CAATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATC-ATG
* *
80233032 C--TG-C--ATCCCAGACACGGTCTTACACGAAATCTCATA-C-TG
1 CAATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATCATG
*
80233071 -AA-GTCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATG
1 CAATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATC-ATG
*
80233116 CTAATGTCATATCCCAGATATGGTCTTACAC-AGGATCTCATATCGATG
1 C-AATGTCATATCCCAGATATGGTCTTACACGA-AATCTCATATC-ATG
*
80233164 CCATGTC
1 CAATGTC
80233171 TCAGTCATGG
Statistics
Matches: 115, Mismatches: 12, Indels: 24
0.76 0.08 0.16
Matches are distributed among these distances:
39 3 0.03
40 1 0.01
41 1 0.01
42 55 0.48
43 1 0.01
44 1 0.01
45 4 0.03
47 8 0.07
48 41 0.36
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (46 bp):
CAATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATCATG
Found at i:80233129 original size:48 final size:45
Alignment explanation
Indices: 80233036--80233164 Score: 158
Period size: 48 Copynumber: 2.8 Consensus size: 45
80233026 TCAATGCTGC
* *
80233036 ATCCCAGACACGGTCTTACACGAAATCTCATA-C--TG-AAGTCAT
1 ATCCCAGATATGGTCTTACACG-AATCTCATATCGATGCAAGTCAT
80233078 ATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCTAATGTCAT
1 ATCCCAGATATGGTCTTACACG-AATCTCATATCGATGC-AA-GTCAT
*
80233126 ATCCCAGATATGGTCTTACACAGGATCTCATATCGATGC
1 ATCCCAGATATGGTCTTACAC-GAATCTCATATCGATGC
80233165 CATGTCTCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
42 29 0.38
43 1 0.01
45 2 0.03
47 2 0.03
48 41 0.54
49 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (45 bp):
ATCCCAGATATGGTCTTACACGAATCTCATATCGATGCAAGTCAT
Found at i:80233239 original size:37 final size:37
Alignment explanation
Indices: 80233177--80233300 Score: 189
Period size: 37 Copynumber: 3.4 Consensus size: 37
80233167 TGTCTCAGTC
*
80233177 ATGGTCTTACACGT-ATCACAATGCCATAGCCCAGCT
1 ATGGTCTTACACGTCATCACGATGCCATAGCCCAGCT
*
80233213 ATGGTCTTACATGTCATCACGATGCCATAGCCCAGCT
1 ATGGTCTTACACGTCATCACGATGCCATAGCCCAGCT
* *
80233250 ATGGTCTTACACG-CTATTACGATGCCATAGCCCAGTT
1 ATGGTCTTACACGTC-ATCACGATGCCATAGCCCAGCT
80233287 ATGGTCTTACACGT
1 ATGGTCTTACACGT
80233301 ACTACATGTA
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
36 14 0.17
37 66 0.82
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (37 bp):
ATGGTCTTACACGTCATCACGATGCCATAGCCCAGCT
Found at i:80233547 original size:19 final size:19
Alignment explanation
Indices: 80233519--80233560 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
80233509 ATACTGATTA
80233519 TACA-TTATTCGATAAGTG
1 TACATTTATTCGATAAGTG
80233537 TACATTTATTCGATAAGTG
1 TACATTTATTCGATAAGTG
80233556 TACAT
1 TACAT
80233561 AAACACACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (19 bp):
TACATTTATTCGATAAGTG
Found at i:80237451 original size:20 final size:20
Alignment explanation
Indices: 80237401--80237489 Score: 90
Period size: 20 Copynumber: 4.5 Consensus size: 20
80237391 CGGGGCTCCA
* *
80237401 AAGTGCAAACAAGGGCA-CA
1 AAGTGCAAACAGGGGCACCG
80237420 AATGTGCAAACAGGGGCACCG
1 AA-GTGCAAACAGGGGCACCG
* ** * *
80237441 TAGTGTGAACAGAGACACCG
1 AAGTGCAAACAGGGGCACCG
*
80237461 AAGTGCAAACAGGGGCATCG
1 AAGTGCAAACAGGGGCACCG
80237481 AAGTGCAAA
1 AAGTGCAAA
80237490 TCCCGTACAA
Statistics
Matches: 55, Mismatches: 13, Indels: 3
0.77 0.18 0.04
Matches are distributed among these distances:
19 2 0.04
20 51 0.93
21 2 0.04
ACGTcount: A:0.39, C:0.20, G:0.30, T:0.10
Consensus pattern (20 bp):
AAGTGCAAACAGGGGCACCG
Found at i:80238603 original size:4 final size:4
Alignment explanation
Indices: 80238589--80238625 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
80238579 GAATGAATCA
*
80238589 TCTT TCCT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T
80238626 TTTATTCTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
TCTT
Found at i:80242869 original size:29 final size:29
Alignment explanation
Indices: 80242836--80242892 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
80242826 TTTACAACTC
80242836 ACATAACTGATAGCTCATACTTGACAGAG
1 ACATAACTGATAGCTCATACTTGACAGAG
80242865 ACATAACTGATAGCTCATACTTGACAGA
1 ACATAACTGATAGCTCATACTTGACAGA
80242893 CTTATTAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.25
Consensus pattern (29 bp):
ACATAACTGATAGCTCATACTTGACAGAG
Found at i:80243014 original size:28 final size:29
Alignment explanation
Indices: 80242952--80243024 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
80242942 TCTGACAGAT
* * *
80242952 TTCCACTTATAATATAGTTCCAATGAACG
1 TTCCACATATAAGATAGTCCCAATGAACG
**
80242981 TT-CACATATAAGATAGTCCCAATGGTC-
1 TTCCACATATAAGATAGTCCCAATGAACG
80243008 TTCCACATATAAGATAG
1 TTCCACATATAAGATAG
80243025 CCTTGACGGA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
27 2 0.05
28 34 0.89
29 2 0.05
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (29 bp):
TTCCACATATAAGATAGTCCCAATGAACG
Found at i:80249133 original size:36 final size:36
Alignment explanation
Indices: 80249082--80249150 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
80249072 TGTGTTTTAG
*
80249082 AATTCGAAGGTAGTTGGGAGAAATACCGTTGGTCGA
1 AATTCGAAGGCAGTTGGGAGAAATACCGTTGGTCGA
80249118 AATTCGAAGGCAGTTGGGAGAAATACCGTTGGT
1 AATTCGAAGGCAGTTGGGAGAAATACCGTTGGT
80249151 TGAATTTGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.25
Consensus pattern (36 bp):
AATTCGAAGGCAGTTGGGAGAAATACCGTTGGTCGA
Found at i:80249587 original size:36 final size:36
Alignment explanation
Indices: 80249540--80249614 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
80249530 TGCCATCAAA
80249540 GTTAGAAAGGATCCACAATGTATTTCATGTGTCGAT
1 GTTAGAAAGGATCCACAATGTATTTCATGTGTCGAT
*
80249576 GTTAGAAAGGATCCACACTGTATTTCATGTGTCGAT
1 GTTAGAAAGGATCCACAATGTATTTCATGTGTCGAT
80249612 GTT
1 GTT
80249615 GCAACGATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.35
Consensus pattern (36 bp):
GTTAGAAAGGATCCACAATGTATTTCATGTGTCGAT
Found at i:80254523 original size:45 final size:45
Alignment explanation
Indices: 80254459--80254716 Score: 257
Period size: 45 Copynumber: 5.9 Consensus size: 45
80254449 TAGGATTCTG
* * * *
80254459 ATATGTTTTTTCGTGTAAGACCCCGTCTAGGACGTTGGCATCAAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
80254504 ATATGTGTTTTGGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
80254549 ATATGTG-TTTCGTGTAAGACCACGTTTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * * *
80254593 ATATGTGGTTACGTGTAAGACCATGTCTGGGACATCGACAT---T
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* *
80254635 GTAT-TGATTT-GTGTAAGACC-CTGTCTGGGACAG-TGGCATCG--
1 ATATGTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT
* * ** *
80254676 ATATGAGATAGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
80254717 TGTTCATATA
Statistics
Matches: 179, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
40 23 0.13
41 7 0.04
42 8 0.04
43 24 0.13
44 43 0.24
45 74 0.41
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:80254621 original size:89 final size:85
Alignment explanation
Indices: 80254467--80254716 Score: 258
Period size: 89 Copynumber: 2.9 Consensus size: 85
80254457 TGATATGTTT
* * * **
80254467 TTTCGTGTAAGACCCCGTCTAGGACGTTGGCATCAATATATGTGTTTTGGTGTAAGACCACGTCT
1 TTTCGTGTAAGA-CCCGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCACGTCT
*
80254532 GGGACGTTGGCATCGATATATGTG
65 GGGACGTTGGCATCG-TAT-TG-A
* *
80254556 TTTCGTGTAAGACCACGTTTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCATGTCT
1 TTTCGTGTAAGACC-CGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCACGTCT
* * * *
80254621 GGGACATCGACATTGTATTGA
65 GGGACGTTGGCATCGTATTGA
* * *
80254642 TTT-GTGTAAGACCCTGTCTGGGACAG-TGGCATCG--ATATG-AGATAGCATGTAAGACCACGT
1 TTTCGTGTAAGACCC-GTCTGGGAC-GTTGGCATCGATATATGTGGTTA-CGTGTAAGACCACGT
80254702 CTGGGACGTTGGCAT
63 CTGGGACGTTGGCAT
80254717 TGTTCATATA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
82 3 0.02
83 30 0.22
84 1 0.01
85 26 0.19
86 4 0.03
87 2 0.01
88 5 0.04
89 66 0.48
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (85 bp):
TTTCGTGTAAGACCCGTCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCACGTCTG
GGACGTTGGCATCGTATTGA
Found at i:80263534 original size:10 final size:11
Alignment explanation
Indices: 80263503--80263535 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
80263493 CGGCTCGCCC
80263503 ATATTAATTTT
1 ATATTAATTTT
*
80263514 ATATTATTTTT
1 ATATTAATTTT
80263525 ATA-TAATTTT
1 ATATTAATTTT
80263535 A
1 A
80263536 AAATATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATATTAATTTT
Found at i:80266374 original size:40 final size:40
Alignment explanation
Indices: 80266290--80266365 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
80266280 TATTCGAATG
*
80266290 ATATCCGGGCTAAGTACCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTACCGAAGGCATTTATGCGAGTGACT
* *
80266330 ATATCTGGGCTAAG-ACCCGAAGGCATTTGTGCGAGT
1 ATATCCGGGCTAAGTA-CCGAAGGCATTTATGCGAGT
80266366 TCTTATATCC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 1 0.03
40 31 0.97
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTACCGAAGGCATTTATGCGAGTGACT
Found at i:80268628 original size:22 final size:22
Alignment explanation
Indices: 80268602--80268658 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
80268592 TCTACCATCA
* *
80268602 ATGTCATGACACCAGTCATGTG
1 ATGTCATGACACCAGCCATGGG
*
80268624 ATGTC-TCGACACTAGCCATGGG
1 ATGTCAT-GACACCAGCCATGGG
*
80268646 ATGTCACGACACC
1 ATGTCATGACACC
80268659 CAACCTAGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (22 bp):
ATGTCATGACACCAGCCATGGG
Found at i:80271189 original size:29 final size:29
Alignment explanation
Indices: 80271154--80271227 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
80271144 GTTGTGAGAT
* *
80271154 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
80271183 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
80271212 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
80271228 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:80274500 original size:33 final size:33
Alignment explanation
Indices: 80274458--80274524 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
80274448 TGTTATTGCC
80274458 TTAATTGATCCAGGGTCTACTCATTCCTATGTA
1 TTAATTGATCCAGGGTCTACTCATTCCTATGTA
80274491 TTAATTGATCCAGGGTCTACTCATTCCTATGTA
1 TTAATTGATCCAGGGTCTACTCATTCCTATGTA
80274524 T
1 T
80274525 GCATGAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (33 bp):
TTAATTGATCCAGGGTCTACTCATTCCTATGTA
Found at i:80281617 original size:47 final size:47
Alignment explanation
Indices: 80281548--80281644 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
80281538 AAATTATAGA
80281548 AATATCCTTTCGTAATTAAAATGAATTATATTATTTGATGGTATGTT
1 AATATCCTTTCGTAATTAAAATGAATTATATTATTTGATGGTATGTT
*
80281595 AATATCCTTTTGTAATTAAAATGAATTATATTATTTGATGGTATGTT
1 AATATCCTTTCGTAATTAAAATGAATTATATTATTTGATGGTATGTT
80281642 AAT
1 AAT
80281645 CTTTTTATTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.47
Consensus pattern (47 bp):
AATATCCTTTCGTAATTAAAATGAATTATATTATTTGATGGTATGTT
Found at i:80282104 original size:19 final size:20
Alignment explanation
Indices: 80282069--80282109 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
80282059 TTATTTTTAT
* *
80282069 AAATTTTTAAAACAATATTA
1 AAATTTATAAAACAATACTA
80282089 AAATTTATAAAA-AATACTA
1 AAATTTATAAAACAATACTA
80282108 AA
1 AA
80282110 TAAATTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATTTATAAAACAATACTA
Found at i:80287661 original size:19 final size:19
Alignment explanation
Indices: 80287637--80287674 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
80287627 CCCTATTTTC
80287637 CCTTCTCTTGTCTTTCTAT
1 CCTTCTCTTGTCTTTCTAT
80287656 CCTTCTCTTGTCTTTCTAT
1 CCTTCTCTTGTCTTTCTAT
80287675 GCCAAAGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.05, C:0.32, G:0.05, T:0.58
Consensus pattern (19 bp):
CCTTCTCTTGTCTTTCTAT
Found at i:80289963 original size:29 final size:29
Alignment explanation
Indices: 80289910--80289965 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
80289900 TAACATCATT
* * *
80289910 TTATATTTATCTATTACATACATAAATGA
1 TTATATTTATCTAATACAAAAATAAATGA
*
80289939 TTATATTTATCTAATATAAAAATAAAT
1 TTATATTTATCTAATACAAAAATAAAT
80289966 TGATGTATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (29 bp):
TTATATTTATCTAATACAAAAATAAATGA
Found at i:80290040 original size:31 final size:30
Alignment explanation
Indices: 80289995--80290089 Score: 93
Period size: 31 Copynumber: 3.1 Consensus size: 30
80289985 AGTATGTATG
*
80289995 ATTAAATCAAAATTAAAGTTTTAAGTATACA
1 ATTAAA-CCAAATTAAAGTTTTAAGTATACA
* * * *
80290026 TTTAAACCACAATTAAAGTTTCACGTATATA
1 ATTAAACCA-AATTAAAGTTTTAAGTATACA
* * *
80290057 ATTACACCAAATTAAA-ATTTATGTATACA
1 ATTAAACCAAATTAAAGTTTTAAGTATACA
80290086 ATTA
1 ATTA
80290090 CACTTAAATC
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
29 13 0.25
30 9 0.17
31 30 0.58
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.36
Consensus pattern (30 bp):
ATTAAACCAAATTAAAGTTTTAAGTATACA
Found at i:80297962 original size:25 final size:25
Alignment explanation
Indices: 80297928--80297977 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
80297918 ATATACTATG
80297928 TTCATTTCCTAAGCTACCCCTTTAA
1 TTCATTTCCTAAGCTACCCCTTTAA
80297953 TTCATTTCCTAAGCTACCCCTTTAA
1 TTCATTTCCTAAGCTACCCCTTTAA
80297978 ACCTCTCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.32, G:0.04, T:0.40
Consensus pattern (25 bp):
TTCATTTCCTAAGCTACCCCTTTAA
Found at i:80299562 original size:19 final size:19
Alignment explanation
Indices: 80299538--80299594 Score: 114
Period size: 19 Copynumber: 3.0 Consensus size: 19
80299528 AGGTACACAG
80299538 TAAACATTATAGGTTAGGT
1 TAAACATTATAGGTTAGGT
80299557 TAAACATTATAGGTTAGGT
1 TAAACATTATAGGTTAGGT
80299576 TAAACATTATAGGTTAGGT
1 TAAACATTATAGGTTAGGT
80299595 CTATTTACTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (19 bp):
TAAACATTATAGGTTAGGT
Found at i:80303808 original size:30 final size:30
Alignment explanation
Indices: 80303773--80303830 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
80303763 TTAGTATGAA
80303773 GACAGGAAACCAAAGAAACAATAGCTTACC
1 GACAGGAAACCAAAGAAACAATAGCTTACC
80303803 GACAGGAAACCAAAGAAACAATAGCTTA
1 GACAGGAAACCAAAGAAACAATAGCTTA
80303831 TCTCTACGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.52, C:0.21, G:0.17, T:0.10
Consensus pattern (30 bp):
GACAGGAAACCAAAGAAACAATAGCTTACC
Found at i:80309024 original size:38 final size:38
Alignment explanation
Indices: 80308898--80309024 Score: 182
Period size: 38 Copynumber: 3.3 Consensus size: 38
80308888 AACCGTACTA
*
80308898 TTATTCAGGCTTAGTGCCTAGCAGGTTTAGTGCTGGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
* *
80308936 TTATTTAGGCTTAGTGCCTAGCAGGCTTAGTACTGGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
* * * *
80308974 TTTTTCAGGCTTAGTGCCTACCAGGCTTAGTGCCGATG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
*
80309012 TTATTCAAGCTTA
1 TTATTCAGGCTTA
80309025 TTTCTAGTGT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 78 1.00
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.37
Consensus pattern (38 bp):
TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
Found at i:80310930 original size:75 final size:75
Alignment explanation
Indices: 80310803--80310953 Score: 275
Period size: 75 Copynumber: 2.0 Consensus size: 75
80310793 CCCCTTTTTA
* * *
80310803 ACACTTATACTTAATGAATATTAAAAACAAAGTAAAACATAATTATGTTCTCATAAATGATTTTT
1 ACACTTATACTTAATGAATATTAAAAACAAAGTAAAACATAATTATGCTCTCATAAATAATCTTT
80310868 GCAAAAACTC
66 GCAAAAACTC
80310878 ACACTTATACTTAATGAATATTAAAAACAAAGTAAAACATAATTATGCTCTCATAAATAATCTTT
1 ACACTTATACTTAATGAATATTAAAAACAAAGTAAAACATAATTATGCTCTCATAAATAATCTTT
80310943 GCAAAAACTC
66 GCAAAAACTC
80310953 A
1 A
80310954 TTGCATGGAA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.32
Consensus pattern (75 bp):
ACACTTATACTTAATGAATATTAAAAACAAAGTAAAACATAATTATGCTCTCATAAATAATCTTT
GCAAAAACTC
Found at i:80319582 original size:22 final size:22
Alignment explanation
Indices: 80319557--80319600 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
80319547 GGTAAGAAAA
*
80319557 TTATTTAATTGAAAAAATTAAT
1 TTATCTAATTGAAAAAATTAAT
**
80319579 TTATCTAATTGAATTAATTAAT
1 TTATCTAATTGAAAAAATTAAT
80319601 AAATAATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
TTATCTAATTGAAAAAATTAAT
Found at i:80322892 original size:27 final size:26
Alignment explanation
Indices: 80322855--80322966 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
80322845 AGCATGGCTG
*
80322855 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
* *
80322881 CCAGATACAGATCATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
80322909 CCAGAACAGATATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * * *
80322936 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
80322963 CCAG
1 CCAG
80322967 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.07
27 52 0.70
28 17 0.23
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:80322914 original size:54 final size:54
Alignment explanation
Indices: 80322855--80322966 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
80322845 AGCATGGCTG
*
80322855 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATCA-TCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGAT-ATTCGTGGCAGAGCCA
* *
80322909 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATATTCGTGGCAGAGCCA
80322963 CCAG
1 CCAG
80322967 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.62
55 19 0.36
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATATTCGTGGCAGAGCCA
Found at i:80329435 original size:27 final size:26
Alignment explanation
Indices: 80329398--80329509 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
80329388 AGTATGGCTG
* *
80329398 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
80329424 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
80329452 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
80329479 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
80329506 CCAG
1 CCAG
80329510 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:80329457 original size:54 final size:54
Alignment explanation
Indices: 80329398--80329509 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
80329388 AGTATGGCTG
*
80329398 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
80329452 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
80329506 CCAG
1 CCAG
80329510 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:80354111 original size:44 final size:43
Alignment explanation
Indices: 80353969--80354125 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
80353959 GGCTCGTACA
* *
80353969 ATGCCAACGT-CCATGATGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCA-GATATGGTCTTACATGTAAATCAAATAT-G
* * * * * *
80354012 ATGTCACTATCCCAGATAGGGTCTTACACG-AAATCAAATACG
1 ATGCCAATGTCCCAGATATGGTCTTACATGTAAATCAAATATG
* *
80354054 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCTCAAAT-TG
1 ATGCCAATGTCCCAGATATGGTCTTACATGTAAA--TCAAATATG
* *
80354098 ATGCCAATGTCCCAAATGTGGTCTTACA
1 ATGCCAATGTCCCAGATATGGTCTTACA
80354126 CAAAATCACA
Statistics
Matches: 89, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 24 0.27
43 31 0.35
44 28 0.31
45 6 0.07
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGATATGGTCTTACATGTAAATCAAATATG
Found at i:80365754 original size:52 final size:48
Alignment explanation
Indices: 80365735--80365937 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
80365725 TGACAAGTGG
* *
80365735 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80365781 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
80365833 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
80365879 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
80365925 AAAGTGATAAGTG
1 AAAGTGATAAGTG
80365938 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:80365789 original size:98 final size:98
Alignment explanation
Indices: 80365669--80365937 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
80365659 TTTGAGTACT
*
80365669 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80365734 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
80365767 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
80365832 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
80365865 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
80365930 GATAAGTG
65 GAAAAGTG
80365938 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:80365945 original size:37 final size:37
Alignment explanation
Indices: 80365901--80366046 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
80365891 GATAGCTTTA
*
80365901 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80365938 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
80365975 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
80366012 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
80366047 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:80368978 original size:16 final size:15
Alignment explanation
Indices: 80368932--80368978 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 15
80368922 TTAAACTTTA
80368932 TATTTTATGTATTATT
1 TATTTTATGT-TTATT
80368948 TATTTT-TCGTTTATT
1 TATTTTAT-GTTTATT
80368963 TATTTTATGATTTATT
1 TATTTTATG-TTTATT
80368979 GCAAATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 13 0.46
16 15 0.54
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (15 bp):
TATTTTATGTTTATT
Found at i:80372990 original size:19 final size:19
Alignment explanation
Indices: 80372966--80373012 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
80372956 CTTTCTTTCT
80372966 TTTGCATT-CATTCCATGCA
1 TTTGCATTGCATTCCAT-CA
*
80372985 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTCCATCA
80373004 TTTGCATTG
1 TTTGCATTG
80373013 GATTTTCACA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (19 bp):
TTTGCATTGCATTCCATCA
Found at i:80377724 original size:64 final size:64
Alignment explanation
Indices: 80377648--80377774 Score: 209
Period size: 64 Copynumber: 2.0 Consensus size: 64
80377638 TCATTCATAA
* *
80377648 CACATCTAGTTAGGAGTATTTGATTCATTTCGATCATATCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAACATCCTAATTATTTGACATAAGCAT
* * *
80377712 CACATCTGGTTAGGAGCATTTGATTCATTTCGATCATAACATCTTAATTATTTGGCATAAGCA
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAACATCCTAATTATTTGACATAAGCA
80377775 CAGATACATG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAACATCCTAATTATTTGACATAAGCAT
Found at i:80378303 original size:87 final size:88
Alignment explanation
Indices: 80378105--80378355 Score: 380
Period size: 87 Copynumber: 2.9 Consensus size: 88
80378095 GTTGAAATCA
* * * * *
80378105 ACAATTCTTATCTCATTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGTGAAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
80378170 TGGCATTGGAGCGGCTCGAAGCC
66 TGGCATTGGAGCGGCTCAAAGCC
* * *
80378193 ACAGTTTGTATCTCCTTGAAGTTCCAGTGAAGAAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGTGAAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
80378258 T-GTATTGGAGCGGCTCAAAGCC
66 TGGCATTGGAGCGGCTCAAAGCC
*
80378280 ACAATTCGTATCTCCTTGAAGTTCCAGT-AGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGTGA-AGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA
80378344 ATGGCATTGGAG
65 ATGGCATTGGAG
80378356 TAGACTGAAT
Statistics
Matches: 146, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
86 1 0.01
87 79 0.54
88 66 0.45
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTCCAGTGAAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCATTGGAGCGGCTCAAAGCC
Found at i:80378359 original size:44 final size:44
Alignment explanation
Indices: 80378133--80378359 Score: 156
Period size: 44 Copynumber: 5.2 Consensus size: 44
80378123 AAGTTTCAGC
80378133 GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
1 GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
** * * * * * * * ** *
80378177 GGAGCGGCTCGAAGCCAC-AGTTTGTATCTCCTTGAAGTTCCAGT
1 GGAGTAGATCGAAGCTACAAATCTCT-TCTCCCTGAAATGGCATT
* * *
80378221 GAAGAAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT-GTATT
1 GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
** * * * * * ** *
80378264 GGAGCGGCTCAAAGCCAC-AAT-TCGTATCTCCTTGAAGTTCCAGT
1 GGAGTAGATCGAAGCTACAAATCTC-T-TCTCCCTGAAATGGCATT
* *
80378308 AGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATT
1 GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
80378352 GGAGTAGA
1 GGAGTAGA
80378360 CTGAATATAC
Statistics
Matches: 127, Mismatches: 49, Indels: 14
0.67 0.26 0.07
Matches are distributed among these distances:
41 2 0.02
42 4 0.03
43 28 0.22
44 83 0.65
45 8 0.06
46 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (44 bp):
GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
Found at i:80378664 original size:133 final size:134
Alignment explanation
Indices: 80378373--80378665 Score: 340
Period size: 133 Copynumber: 2.2 Consensus size: 134
80378363 AATATACCAA
* * * **
80378373 TCCTACCTCCCTGAAGTTGTAGTGGAGTGGATCAAAGATAGCAAATCTTATCTCTTTGAAATTGC
1 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATCAAAGATAGCAAATATTATCTCTCAGAAATTGC
* * * *
80378438 AATAGAGTAGAGTTAAAGCTATAAACCTTATCTCCTTGAAGTTGCAGTGGGGCAGGTTGAAATTA
66 AATAGAGTAGAGTTAAAGCCACAAACATTATCTCCTTGAAGTTGCAGTGGGGCAAGTTGAAATTA
*
80378503 CGAG
131 CAAG
* * ** *
80378507 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAGATGGTGAATATTATCT-TCCAGAAGTTG
1 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATCAAAGATAGCAAATATTATCTCT-CAGAAATTG
* * * * *
80378571 TAGTGGAGTAGA-TTGAAGCCACAAACATTATC-CCTCTGAAGTTGCAGTGGGGCAAGTTGAAGT
65 CAATAGAGTAGAGTTAAAGCCACAAACATTATCTCCT-TGAAGTTGCAGTGGGGCAAGTTGAAAT
80378634 TACAAG
129 TACAAG
* * *
80378640 TCTTATTTCCCTGAAATTGTAGTGGA
1 TCCTATCTCCCTGAAGTTGTAGTGGA
80378666 ACAGACTGAA
Statistics
Matches: 133, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
132 3 0.02
133 69 0.52
134 61 0.46
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (134 bp):
TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATCAAAGATAGCAAATATTATCTCTCAGAAATTGC
AATAGAGTAGAGTTAAAGCCACAAACATTATCTCCTTGAAGTTGCAGTGGGGCAAGTTGAAATTA
CAAG
Found at i:80380808 original size:15 final size:17
Alignment explanation
Indices: 80380773--80380813 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
80380763 TATGTTAAAC
80380773 TTTATATTTTATGTATTA
1 TTTAT-TTTTATGTATTA
80380791 TTTATTTTTAT-T-TTA
1 TTTATTTTTATGTATTA
80380806 TTTATTTT
1 TTTATTTT
80380814 ATGATTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.48
16 1 0.04
17 6 0.26
18 5 0.22
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTATTTTTATGTATTA
Found at i:80381452 original size:127 final size:127
Alignment explanation
Indices: 80381205--80381441 Score: 282
Period size: 127 Copynumber: 1.9 Consensus size: 127
80381195 GTCGACTTTA
* * * *
80381205 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTCGAGGGATCGTGCCCTAATGTGTTGGGCTTCG
1 TAAAACAAAAGCGATGGTTGATGTTTAGAAATTCGAGGAATCGTGCCCTAATGTGCTGGGCTTCG
* * ** * * **
80381270 ATCTTTTATTTGTCTAAATAATCAGATTTTCCTTTTAAATTTCGTCCGCGTTTTCTAAGCTT
66 ATCTTTTATTTATCTAAATAATCAAACATCCCTTTAAAATCCCGTCCGCGTTTTCTAAGCTT
* * * *
80381332 TAAAACAAAAGCGATGGTTGGTGTTTGGGAATTC-AGGAAATCGTGCCCTAATGTGCTGGGTTTC
1 TAAAACAAAAGCGATGGTTGATGTTTAGAAATTCGAGG-AATCGTGCCCTAATGTGCTGGGCTTC
*
80381396 GAT-TTTCTGTTTATC-AAATAATCAAACATCCCTTTAAAATCCCGTC
65 GATCTTT-TATTTATCTAAATAATCAAACATCCCTTTAAAATCCCGTC
80381442 TGCCTTTTTC
Statistics
Matches: 91, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
126 30 0.33
127 61 0.67
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (127 bp):
TAAAACAAAAGCGATGGTTGATGTTTAGAAATTCGAGGAATCGTGCCCTAATGTGCTGGGCTTCG
ATCTTTTATTTATCTAAATAATCAAACATCCCTTTAAAATCCCGTCCGCGTTTTCTAAGCTT
Found at i:80383106 original size:10 final size:10
Alignment explanation
Indices: 80383091--80383145 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
80383081 TCTTTCCCCC
80383091 TTTTCTTTCT
1 TTTTCTTTCT
80383101 TTTTCTTTCT
1 TTTTCTTTCT
* *
80383111 GTTT-TTTGT
1 TTTTCTTTCT
*
80383120 TTTGGCTTTC-
1 TTT-TCTTTCT
*
80383130 TTTTCTTTTT
1 TTTTCTTTCT
80383140 TTTTCT
1 TTTTCT
80383146 ATTTCTTTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
9 10 0.29
10 22 0.63
11 3 0.09
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.78
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:80383164 original size:16 final size:15
Alignment explanation
Indices: 80383145--80383178 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
80383135 TTTTTTTTTC
*
80383145 TATTTCTTTTATTACT
1 TATTTATTTTATTA-T
80383161 TATTTATTTTATTAT
1 TATTTATTTTATTAT
80383176 TAT
1 TAT
80383179 AATAATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTATTTTATTAT
Found at i:80394258 original size:28 final size:29
Alignment explanation
Indices: 80394205--80394263 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
80394195 CTGAAATATT
80394205 ATTAAATAATTAGAAAAGAATCAT-AATG
1 ATTAAATAATTAGAAAAGAATCATAAATG
* *
80394233 ATTAAATAATTGGAAAAGGA-CTATAAATG
1 ATTAAATAATTAGAAAAGAATC-ATAAATG
80394262 AT
1 AT
80394264 GTGGTGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 1 0.04
28 20 0.74
29 6 0.22
ACGTcount: A:0.54, C:0.03, G:0.14, T:0.29
Consensus pattern (29 bp):
ATTAAATAATTAGAAAAGAATCATAAATG
Found at i:80399635 original size:57 final size:59
Alignment explanation
Indices: 80399509--80399636 Score: 138
Period size: 57 Copynumber: 2.2 Consensus size: 59
80399499 CTTATTATAG
* * * *
80399509 AAAGGATTTAGCCCAGACGGGTAATCCTAATATAAGCCCTCTCGAGCATATGTTATGAA
1 AAAGGATTTAGCCCAGACAGGTAATCCTAATACAAGCCCTCTAGAGCATATGTCATGAA
** * * *
80399568 TTA-GATTTAGCCCGGACAGGTAATCC-AGAT-CAAGCTCTTTAGAGCATATGTCAT-AA
1 AAAGGATTTAGCCCAGACAGGTAATCCTA-ATACAAGCCCTCTAGAGCATATGTCATGAA
80399624 AAAGGATTTAGCC
1 AAAGGATTTAGCC
80399637 TGAACTTGTA
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
56 3 0.05
57 29 0.52
58 23 0.41
59 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (59 bp):
AAAGGATTTAGCCCAGACAGGTAATCCTAATACAAGCCCTCTAGAGCATATGTCATGAA
Found at i:80400538 original size:29 final size:30
Alignment explanation
Indices: 80400504--80400577 Score: 114
Period size: 29 Copynumber: 2.5 Consensus size: 30
80400494 AACTTTCTAT
80400504 CTCTTGATTTCTCTCTTTTGTTTGTGCTAA
1 CTCTTGATTTCTCTCTTTTGTTTGTGCTAA
*
80400534 C-CTTGATTTCTGTCTTTTGTTTGTGCTAA
1 CTCTTGATTTCTCTCTTTTGTTTGTGCTAA
* *
80400563 CTCTTGCTTTATCTC
1 CTCTTGATTTCTCTC
80400578 CACCGTCTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 28 0.72
30 11 0.28
ACGTcount: A:0.09, C:0.22, G:0.14, T:0.55
Consensus pattern (30 bp):
CTCTTGATTTCTCTCTTTTGTTTGTGCTAA
Found at i:80401101 original size:12 final size:12
Alignment explanation
Indices: 80401075--80401109 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
80401065 GTTGAAAATC
*
80401075 AAAAACAGAATAA
1 AAAAACA-AAGAA
80401088 AAAAACAAAGAA
1 AAAAACAAAGAA
80401100 AAAAACAAAG
1 AAAAACAAAG
80401110 GCCCAAAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 14 0.67
13 7 0.33
ACGTcount: A:0.80, C:0.09, G:0.09, T:0.03
Consensus pattern (12 bp):
AAAAACAAAGAA
Found at i:80406291 original size:93 final size:93
Alignment explanation
Indices: 80406178--80406349 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
80406168 CGCCCATAAG
* * *
80406178 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80406243 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
80406271 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80406336 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
80406350 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:80406346 original size:46 final size:46
Alignment explanation
Indices: 80406171--80406346 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
80406161 TGTAACCCGC
* * * *
80406171 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
80406217 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
80406267 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
80406310 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
80406347 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:80409135 original size:46 final size:48
Alignment explanation
Indices: 80409031--80409150 Score: 147
Period size: 48 Copynumber: 2.5 Consensus size: 48
80409021 TGTCTTCGAC
* *
80409031 ATGGACTTACATGAATT-ATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATG-GTTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
80409079 ATGGGCTTACATGGTTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGTTCATTCCTGTCTCCAAAGCCATATATATATAAT
* *
80409125 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGTTCATTCCTGTC
80409151 CTGTCTTGTC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 26 0.41
47 3 0.05
48 34 0.54
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGTTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:80410318 original size:56 final size:56
Alignment explanation
Indices: 80410235--80410340 Score: 203
Period size: 56 Copynumber: 1.9 Consensus size: 56
80410225 ATCACGAAAT
80410235 TTTCACACAATCATGCAATCATATCATGAACCTAAAAATAATAATAAAATTTAAAA
1 TTTCACACAATCATGCAATCATATCATGAACCTAAAAATAATAATAAAATTTAAAA
*
80410291 TTTCACACAATCATGCAATCATATCATGAACCTCAAAATAATAATAAAAT
1 TTTCACACAATCATGCAATCATATCATGAACCTAAAAATAATAATAAAAT
80410341 AAATTTTTCT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.50, C:0.18, G:0.04, T:0.28
Consensus pattern (56 bp):
TTTCACACAATCATGCAATCATATCATGAACCTAAAAATAATAATAAAATTTAAAA
Found at i:80413532 original size:46 final size:48
Alignment explanation
Indices: 80413428--80413547 Score: 145
Period size: 48 Copynumber: 2.5 Consensus size: 48
80413418 TGTCTTCGAC
* * * *
80413428 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGACTCATTACTGTCTCCAAAGCCATATATATATAAT
* * *
80413476 ATGGGCTTACATGACTCATTACTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGACTCATTACTGTCTCCAAAGCCATATATATATAAT
* *
80413522 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGACTCATTACTGTC
80413548 CTGTCTTGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.42
47 1 0.02
48 35 0.56
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGACTCATTACTGTCTCCAAAGCCATATATATATAAT
Found at i:80416501 original size:30 final size:30
Alignment explanation
Indices: 80416467--80416526 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
80416457 ACTTAACAAG
80416467 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
80416497 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
80416527 TAATAAAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:80418316 original size:20 final size:20
Alignment explanation
Indices: 80418293--80418333 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
80418283 GATTTGATTC
* *
80418293 TAATTATATTTATTTATCTT
1 TAATTAAATGTATTTATCTT
80418313 TAATTAAATGTATTTATCTT
1 TAATTAAATGTATTTATCTT
80418333 T
1 T
80418334 TTAGAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (20 bp):
TAATTAAATGTATTTATCTT
Found at i:80419077 original size:46 final size:46
Alignment explanation
Indices: 80419004--80419179 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
80418994 CTAGACCAAT
80419004 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
80419050 TTCGAACTCGTTGAGTTAAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
80419095 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80419143 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80419180 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 25 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80421800 original size:20 final size:18
Alignment explanation
Indices: 80421766--80421802 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
80421756 GCAACTCATA
80421766 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
80421784 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
80421803 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:80424801 original size:46 final size:46
Alignment explanation
Indices: 80424701--80424827 Score: 134
Period size: 46 Copynumber: 2.7 Consensus size: 46
80424691 AACATCTCGA
* **
80424701 GGCCGATGCATGTCCTAGACATGTCTTACACTGACTCTCATACTGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGACTCTCATACAAT
* *
80424747 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTC-T-CAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACT-G-ACTC-TCATACAAT
*
80424794 -GCCGATGCCATGTCCCATACATGGTCTTACACTG
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTG
80424828 GCACACAAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
46 36 0.52
47 17 0.25
48 14 0.20
49 2 0.03
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTGACTCTCATACAAT
Found at i:80427754 original size:20 final size:18
Alignment explanation
Indices: 80427720--80427756 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
80427710 GCAACTCATA
80427720 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
80427738 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
80427757 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:80428836 original size:9 final size:9
Alignment explanation
Indices: 80428824--80428850 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
80428814 TCCCCTTTAC
80428824 TATTATTTT
1 TATTATTTT
80428833 TATTATTTT
1 TATTATTTT
80428842 TATTATTTT
1 TATTATTTT
80428851 ACAGGGAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TATTATTTT
Found at i:80443110 original size:16 final size:16
Alignment explanation
Indices: 80443069--80443127 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
80443059 TAAAGCCCAA
*
80443069 TATTATAACAAACTTAAT
1 TATTATAA-AAA-ATAAT
80443087 TATTATAATAAAAT-AT
1 TATTATAA-AAAATAAT
*
80443103 TATCATAAAAAATAAT
1 TATTATAAAAAATAAT
80443119 TATTATAAA
1 TATTATAAA
80443128 GAGAACGACT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
15 5 0.14
16 19 0.53
17 1 0.03
18 11 0.31
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (16 bp):
TATTATAAAAAATAAT
Found at i:80447717 original size:36 final size:35
Alignment explanation
Indices: 80447676--80447745 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 35
80447666 ATTAATTAAA
80447676 ATTTT-AAATTCAAAA-AATTAAAAAAATATAAAAATT
1 ATTTTAAAATT-AAAATAATT-AAAAAATA-AAAAATT
*
80447712 ATTTTAAAATTAAAATTATTAAAAAATAAAAAAT
1 ATTTTAAAATTAAAATAATTAAAAAATAAAAAAT
80447746 ATATATTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
35 6 0.19
36 17 0.55
37 8 0.26
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (35 bp):
ATTTTAAAATTAAAATAATTAAAAAATAAAAAATT
Found at i:80447743 original size:17 final size:17
Alignment explanation
Indices: 80447688--80447743 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
80447678 TTTAAATTCA
*
80447688 AAAAATTA-AAAAAATAT
1 AAAAATTATTAAAAA-AT
**
80447705 AAAAATTATTTTAAAAT
1 AAAAATTATTAAAAAAT
*
80447722 TAAAATTATTAAAAAAT
1 AAAAATTATTAAAAAAT
80447739 AAAAA
1 AAAAA
80447744 ATATATATTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
17 28 0.90
18 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAATTATTAAAAAAT
Found at i:80452315 original size:18 final size:20
Alignment explanation
Indices: 80452292--80452330 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
80452282 AAGTATCGAG
80452292 TATCAATA-ATTTTC-AAAA
1 TATCAATACATTTTCTAAAA
80452310 TATCAATACATTTTCTAAAA
1 TATCAATACATTTTCTAAAA
80452330 T
1 T
80452331 TGATGCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
19 6 0.32
20 5 0.26
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (20 bp):
TATCAATACATTTTCTAAAA
Found at i:80453577 original size:15 final size:15
Alignment explanation
Indices: 80453557--80453586 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80453547 GTGATGAGAA
*
80453557 ATATGTGAAATAATG
1 ATATGTGAAACAATG
80453572 ATATGTGAAACAATG
1 ATATGTGAAACAATG
80453587 TACATATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.30
Consensus pattern (15 bp):
ATATGTGAAACAATG
Found at i:80457429 original size:23 final size:23
Alignment explanation
Indices: 80457375--80457430 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
80457365 CGCTTCTGCG
* *
80457375 GTGTTCTATTATCCACTTTAACA
1 GTGTTCTGTTATCCACTTCAACA
* *
80457398 GTGTCCTGTTATCCACTTCGACA
1 GTGTTCTGTTATCCACTTCAACA
80457421 GTGTTCTGTT
1 GTGTTCTGTT
80457431 CTGTTCCATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (23 bp):
GTGTTCTGTTATCCACTTCAACA
Found at i:80460448 original size:15 final size:15
Alignment explanation
Indices: 80460428--80460469 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
80460418 GTCCCTATAC
80460428 TTTTCAAAATTTGAA
1 TTTTCAAAATTTGAA
80460443 TTTTCAAAATTTGAA
1 TTTTCAAAATTTGAA
* *
80460458 ATTTCAATATTT
1 TTTTCAAAATTT
80460470 ACGTAAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (15 bp):
TTTTCAAAATTTGAA
Found at i:80464693 original size:20 final size:19
Alignment explanation
Indices: 80464666--80464721 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 19
80464656 TATTTTGTGA
80464666 ATTTAATATTAAAGTGATT
1 ATTTAATATTAAAGTGATT
80464685 ATCTTAATATT--A-T-ATT
1 AT-TTAATATTAAAGTGATT
80464701 AATTTAATATTAAAGTGATT
1 -ATTTAATATTAAAGTGATT
80464721 A
1 A
80464722 AGTTTAATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
16 11 0.35
17 3 0.10
18 2 0.06
19 4 0.13
20 11 0.35
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (19 bp):
ATTTAATATTAAAGTGATT
Found at i:80467506 original size:21 final size:21
Alignment explanation
Indices: 80467480--80467521 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
80467470 GCTTAAAACT
80467480 TCTAACTCTAATAACGGGTAC
1 TCTAACTCTAATAACGGGTAC
80467501 TCTAACTCTAATAACGGGTAC
1 TCTAACTCTAATAACGGGTAC
80467522 CTATGGCGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (21 bp):
TCTAACTCTAATAACGGGTAC
Found at i:80470484 original size:26 final size:26
Alignment explanation
Indices: 80470433--80470484 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
80470423 CAAGAAATAC
*
80470433 AAAATTTGAACCTAGACCGAGGGAAG
1 AAAATTTGAACCTAGACCCAGGGAAG
*
80470459 AAAATTCT-AACCTAGACCCAGTGAAG
1 AAAATT-TGAACCTAGACCCAGGGAAG
80470485 GTCGAGCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.17
Consensus pattern (26 bp):
AAAATTTGAACCTAGACCCAGGGAAG
Found at i:80476090 original size:133 final size:136
Alignment explanation
Indices: 80475834--80476094 Score: 329
Period size: 133 Copynumber: 1.9 Consensus size: 136
80475824 TTGGGTGATA
*
80475834 TGTGTGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCACATTATGAGAGACAGTGTAAGACA
1 TGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CACATTATGAGAGA-AGTGTAAGACA
* *
80475899 TGTCTGGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAAACCTGTCTGGGACATGGCGT
64 TGCCTGGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAAACCTGTCTAGGACATGGCGT
80475964 CAACTTGT
129 CAACTTGT
* * * *
80475972 TGTGTGTTAGTGTAAGACCTGTCTGGGACATGGCATC-G-ACA-T-TGATAG-AGTGTAAGACCT
1 TGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCACATTATGAGAGAAGTGTAAGACAT
* * *
80476032 GCCTGGGACATGGCATCGGCCTCGATATATGA-AAG-TCAGTGTAAGACCTGTCTAGGACATGGC
65 GCCTGGGACAT-GCATCAGCCTCGAGATAT-ACAAGCT-AGTGTAAAACCTGTCTAGGACATGGC
80476095 ATCGACTTTG
Statistics
Matches: 109, Mismatches: 10, Indels: 13
0.83 0.08 0.10
Matches are distributed among these distances:
132 22 0.20
133 43 0.39
134 6 0.06
135 1 0.01
136 3 0.03
138 30 0.28
139 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (136 bp):
TGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCACATTATGAGAGAAGTGTAAGACATG
CCTGGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTAAAACCTGTCTAGGACATGGCGTCA
ACTTGT
Found at i:80482794 original size:31 final size:29
Alignment explanation
Indices: 80482758--80482815 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
80482748 AATAGTATTT
*
80482758 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
80482789 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
80482816 GTAGATAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:80482886 original size:26 final size:27
Alignment explanation
Indices: 80482823--80482887 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
80482813 CTTGTAGATA
*
80482823 AATATT-ATATTAATTTAATAAGATTT
1 AATATTAATATTAATATAATAAGATTT
*
80482849 AATATTAA-ATTAATATAAT-ATATATT
1 AATATTAATATTAATATAATAAGAT-TT
80482875 AAT-TTAATATTAA
1 AATATTAATATTAA
80482888 AATGATTAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 7 0.21
26 26 0.76
27 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
AATATTAATATTAATATAATAAGATTT
Found at i:80484354 original size:58 final size:61
Alignment explanation
Indices: 80484243--80484358 Score: 168
Period size: 58 Copynumber: 2.0 Consensus size: 61
80484233 AGTGATTATC
*
80484243 TTAATATTAAATTAAATTAATTATTTATCTTGTAGATAAATATTCTATTAATTTAATACAT
1 TTAATATTAAATTAAATTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATACAT
* *
80484304 TTAATATTTAATTTAATTTAA-TATTTATC-T-T-GATAAATATTATATTAATTTAATA
1 TTAATA-TTAAATTAAATTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATA
80484359 TTAAAGTAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
58 23 0.45
59 1 0.02
60 1 0.02
61 14 0.27
62 12 0.24
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (61 bp):
TTAATATTAAATTAAATTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATACAT
Found at i:80484377 original size:58 final size:61
Alignment explanation
Indices: 80484248--80484378 Score: 155
Period size: 58 Copynumber: 2.2 Consensus size: 61
80484238 TTATCTTAAT
* * * *
80484248 ATTAAATTAAATTAATTATTTATCTTGTAGATAAATATTCTATTAATTTAATACATTTAATA
1 ATTAATTTAATTTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATA-ATTAAATA
*
80484310 TTTAATTTAATTTAA-TATTTATC-T-T-GATAAATATTATATTAATTTAAT-ATTAAAGTA
1 ATTAATTTAATTTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATAATTAAA-TA
80484367 ATTAAGTTTAAT
1 ATTAA-TTTAAT
80484379 CATAGTTGAA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
56 5 0.08
57 6 0.10
58 28 0.46
59 1 0.02
60 1 0.02
61 8 0.13
62 12 0.20
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (61 bp):
ATTAATTTAATTTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATAATTAAATA
Found at i:80486409 original size:19 final size:19
Alignment explanation
Indices: 80486376--80486434 Score: 55
Period size: 22 Copynumber: 2.9 Consensus size: 19
80486366 AAATGGTAGC
* *
80486376 AAAATAGTAAAAAAAAAAG
1 AAAATAGCAAAAAAAAAAA
*
80486395 AAAATAGCAACAAAACATGAAA
1 AAAATAGCAA-AAAA-A-AAAA
80486417 AAAATAGCAAGAAAAAAA
1 AAAATAGCAA-AAAAAAA
80486435 TTTAAAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 9 0.28
20 5 0.16
21 2 0.06
22 16 0.50
ACGTcount: A:0.75, C:0.07, G:0.10, T:0.08
Consensus pattern (19 bp):
AAAATAGCAAAAAAAAAAA
Found at i:80493616 original size:11 final size:11
Alignment explanation
Indices: 80493600--80493629 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
80493590 TGAAGGAAAA
80493600 GACCATGGTTG
1 GACCATGGTTG
80493611 GACCATGGTTG
1 GACCATGGTTG
80493622 GACCATGG
1 GACCATGG
80493630 CAACAAGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.37, T:0.23
Consensus pattern (11 bp):
GACCATGGTTG
Found at i:80493688 original size:50 final size:50
Alignment explanation
Indices: 80493634--80493910 Score: 428
Period size: 50 Copynumber: 5.5 Consensus size: 50
80493624 CCATGGCAAC
* *
80493634 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
80493684 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
80493734 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
80493784 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
** * *
80493834 AAGTGATAAGTGATAGCTTCAACTACACTTATCTGATCAAGGAGAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
80493885 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
80493911 CTGATCAATG
Statistics
Matches: 207, Mismatches: 19, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
50 185 0.89
51 22 0.11
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:80493928 original size:31 final size:31
Alignment explanation
Indices: 80493890--80493948 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
80493880 ATGGCAAGTA
80493890 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
*
80493921 AAAAGTGGTAGCTTTGGCTACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
80493949 TCGGCTACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:80493956 original size:46 final size:46
Alignment explanation
Indices: 80493903--80493994 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
80493893 AGTGGTAGCT
* **
80493903 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTTGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
80493949 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
80493995 GTGAATAGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:80493998 original size:31 final size:31
Alignment explanation
Indices: 80493950--80494018 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
80493940 ACCTGATCAT
* * *
80493950 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
80493981 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
80494012 CGGCTAC
1 CGGCTAC
80494019 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:80497139 original size:5 final size:5
Alignment explanation
Indices: 80497129--80497157 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
80497119 GATATGCCTT
80497129 ATCAA ATCAA ATCAA ATCAA ATCAA ATCA
1 ATCAA ATCAA ATCAA ATCAA ATCAA ATCA
80497158 TGTAAGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (5 bp):
ATCAA
Found at i:80513086 original size:27 final size:27
Alignment explanation
Indices: 80513056--80513232 Score: 104
Period size: 27 Copynumber: 6.5 Consensus size: 27
80513046 TATTGAGTCC
* * *
80513056 GCACACTCAGTGCTATACAATCAACTA
1 GCACACTTAGTGCTACACAATCAAATA
** *
80513083 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACACAATCAAATA
* * *
80513110 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACACAATCAAA-TA
** *** * *
80513138 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACACAATCAAATA
* * ** *
80513165 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CACAATCAAATA
* * * *
80513192 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACACAATCAAATA
80513219 GCACACTTAGTGCT
1 GCACACTTAGTGCT
80513233 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTACACAATCAAATA
Found at i:80533355 original size:15 final size:15
Alignment explanation
Indices: 80533335--80533363 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
80533325 TTTAGGATTA
80533335 ATTTTGATTGATATG
1 ATTTTGATTGATATG
80533350 ATTTTGATTGATAT
1 ATTTTGATTGATAT
80533364 ATCTTGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (15 bp):
ATTTTGATTGATATG
Found at i:80537122 original size:46 final size:45
Alignment explanation
Indices: 80537002--80537129 Score: 148
Period size: 48 Copynumber: 2.8 Consensus size: 45
80536992 ACCACAACAT
* *
80537002 GAGAGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTTGAGA
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
* * * * * *
80537047 TATTTTAGCCAGTGTAAGACATCTTTGGGACATGCATCTGCATTGAGA
1 GA---GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
80537095 CGAGAGCTAGTGTAAGACATGTCTGGGACATGCAT
1 -GAGAGCTAGTGTAAGACATGTCTGGGACATGCAT
80537130 TGGCCTTGTG
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.02
46 28 0.42
48 36 0.55
49 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (45 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
Found at i:80537172 original size:94 final size:94
Alignment explanation
Indices: 80537002--80537174 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 94
80536992 ACCACAACAT
* *** * *
80537002 GAGAGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTTGAGATATTTTAGCCAGTGTAAGAC
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCACTATAAGAC
* *
80537067 ATCTTTGGGACATGCATCTGCATTGAGAC
66 ATCTCTAGGACATGCATCTGCATTGAGAC
* * *
80537096 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTTGTGATATACAAGCTACTATAAGAC
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCACTATAAGAC
* *
80537161 CTGTCTAGGACATG
66 ATCTCTAGGACATG
80537175 GCATTAGCTT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
94 66 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (94 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCACTATAAGAC
ATCTCTAGGACATGCATCTGCATTGAGAC
Found at i:80538091 original size:30 final size:30
Alignment explanation
Indices: 80538055--80538123 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
80538045 CACGGGCAGA
80538055 GACACGGCCGTGTGTCTCAGCCGTGTGGAG
1 GACACGGCCGTGTGTCTCAGCCGTGTGGAG
80538085 GACACGGCCGTGTGTCTCAGCCGTGTGGAG
1 GACACGGCCGTGTGTCTCAGCCGTGTGGAG
80538115 GACACGGCC
1 GACACGGCC
80538124 TATGGCCACG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.14, C:0.29, G:0.39, T:0.17
Consensus pattern (30 bp):
GACACGGCCGTGTGTCTCAGCCGTGTGGAG
Found at i:80540138 original size:18 final size:18
Alignment explanation
Indices: 80540126--80540178 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 18
80540116 TATCATAACT
80540126 AGAATCAGAATCAGAACC
1 AGAATCAGAATCAGAACC
* *
80540144 AGAATGAGAATTAGGTAA-C
1 AGAATCAGAATCA-G-AACC
*
80540163 AGAATTAGAATCAGAA
1 AGAATCAGAATCAGAA
80540179 TGTGAATGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 2 0.07
18 12 0.41
19 13 0.45
20 2 0.07
ACGTcount: A:0.51, C:0.11, G:0.21, T:0.17
Consensus pattern (18 bp):
AGAATCAGAATCAGAACC
Found at i:80540340 original size:27 final size:26
Alignment explanation
Indices: 80540298--80540349 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
80540288 GCTAGGCTGC
*
80540298 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
80540324 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
80540350 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80540390 original size:67 final size:67
Alignment explanation
Indices: 80540282--80540435 Score: 290
Period size: 67 Copynumber: 2.3 Consensus size: 67
80540272 CACCATAGAA
*
80540282 ATTGCAGCTAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
80540347 AG
66 AG
80540349 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
80540414 AG
66 AG
*
80540416 ATTGCAGCGAGGCTACCAGA
1 ATTGCAGCGAGGCTGCCAGA
80540436 ACACTTCCTC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 85 1.00
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.18
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
AG
Found at i:80540407 original size:27 final size:26
Alignment explanation
Indices: 80540365--80540416 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
80540355 GCGAGGCTGC
*
80540365 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
80540391 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
80540417 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80540719 original size:27 final size:27
Alignment explanation
Indices: 80540689--80541016 Score: 410
Period size: 27 Copynumber: 12.1 Consensus size: 27
80540679 GGTATCTCGA
* * *
80540689 TAATTCCACCCTACAGGGGCATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
80540716 TAATTCTACCCTATAGGGGTATTTC-G
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
80540742 ATAATTCTACCCTATAGCGGTATTGCTA-
1 -TAATTCTACCCTACAGGGGTATTTC-AG
80540770 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
80540797 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
80540824 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
80540851 TAATTCTACCTTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
80540878 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * * * *
80540905 TAATTCTAGCTTATAGGGGTGTTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
** *
80540932 TAATTCTACCCTGTAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
80540959 TAATTTTACCCTACAGGGGTATTGTGA-
1 TAATTCTACCCTACAGGGGTATT-TCAG
*
80540986 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
80541013 TAAT
1 TAAT
80541017 CTTACAAACC
Statistics
Matches: 263, Mismatches: 32, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.01
27 259 0.98
28 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:80541036 original size:81 final size:81
Alignment explanation
Indices: 80540679--80541016 Score: 455
Period size: 81 Copynumber: 4.2 Consensus size: 81
80540669 TACCCCACAA
* * * * ** *
80540679 GGTATCTCGATAATTCCACCCTACAGGGGCATTTTAGTAATTCTACCCTATAGGGGTATTTC-GA
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAG-
*
80540743 TAATTCTACCCTATAGC
65 TAATTCTACCCTATAGG
* ** *
80540760 GGTATTGCTATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
80540825 AATTCTACCCTATAGG
66 AATTCTACCCTATAGG
*
80540841 GGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* *
80540906 AATTCTAGCTTATAGG
66 AATTCTACCCTATAGG
* ** * *
80540922 GGTGTTTCGGTAATTCTACCCTGTAGGGGTATTTCGGTAATTTTACCCTACAGGGGTATTGTGA-
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATT-TCAG
*
80540986 TAATTCTACCCTACAGG
65 TAATTCTACCCTATAGG
80541003 GGTATTTCGGTAAT
1 GGTATTTCGGTAAT
80541017 CTTACAAACC
Statistics
Matches: 230, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
81 227 0.99
82 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.36
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
AATTCTACCCTATAGG
Found at i:80541076 original size:27 final size:27
Alignment explanation
Indices: 80541043--80541222 Score: 261
Period size: 27 Copynumber: 6.7 Consensus size: 27
80541033 ATTTTAGTTT
* *
80541043 TTTTCTAAATCAAGGGTAAAATGGTAA
1 TTTTGTAAATCGAGGGTAAAATGGTAA
* * *
80541070 TTCTCTAAATCAAGGGTAAAATGGTAA
1 TTTTGTAAATCGAGGGTAAAATGGTAA
* * *
80541097 TTTTATAAATCGAGGGTAGAACGGTAA
1 TTTTGTAAATCGAGGGTAAAATGGTAA
* *
80541124 TTCTGTAAATCGAGGGTAAAATAGTAA
1 TTTTGTAAATCGAGGGTAAAATGGTAA
*
80541151 TTTTGTAAATCGAGGGTAAAATAGTAA
1 TTTTGTAAATCGAGGGTAAAATGGTAA
80541178 TTTTGTAAATCGAGGGTAAAATGGTAA
1 TTTTGTAAATCGAGGGTAAAATGGTAA
80541205 TTTTGTAAATCGAGGGTA
1 TTTTGTAAATCGAGGGTA
80541223 CTTTGATAAT
Statistics
Matches: 140, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (27 bp):
TTTTGTAAATCGAGGGTAAAATGGTAA
Found at i:80541244 original size:27 final size:27
Alignment explanation
Indices: 80541214--80541288 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
80541204 ATTTTGTAAA
*
80541214 TCGAGGGTACTTTGA-TAATTTTACATG
1 TCGAGGGTA-TTTCAGTAATTTTACATG
*
80541241 TCGAGGGTATTTCAGTAATTTTACA-A
1 TCGAGGGTATTTCAGTAATTTTACATG
* *
80541267 ACTGAGGATATTTCAGTAATTT
1 TC-GAGGGTATTTCAGTAATTT
80541289 GGTAAACTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.12
27 37 0.88
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (27 bp):
TCGAGGGTATTTCAGTAATTTTACATG
Found at i:80543939 original size:56 final size:56
Alignment explanation
Indices: 80543852--80544069 Score: 255
Period size: 56 Copynumber: 3.9 Consensus size: 56
80543842 TGGCATCGAC
80543852 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGAT
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGAT
* * ** *
80543908 ATATGTGTGCGAGTAAGACCACCTTTGATACGTTGGCATTGATATGTGATTCTGAT
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGAT
* * *
80543964 ATATGTGTGCGAGTAAGGCCACGTTTAATATGTT-GCATCAATATGTGACTT-CAAT
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGA-TTCCGAT
* * * * * *
80544019 AAATATGTGCGAGTAAAACC-CTGTTTGAGACAG-TGGCATCGATATGTGATT
1 ATATGTGTGCGAGTAAGACCAC-GTTTAATAC-GTTGGCATCAATATGTGATT
80544070 ACATGTAAGA
Statistics
Matches: 137, Mismatches: 21, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
54 1 0.01
55 39 0.28
56 97 0.71
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (56 bp):
ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGAT
Found at i:80544056 original size:111 final size:112
Alignment explanation
Indices: 80543852--80544069 Score: 300
Period size: 111 Copynumber: 2.0 Consensus size: 112
80543842 TGGCATCGAC
* * *
80543852 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGATATATGTGTG
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCAATAAATATGTG
* * *
80543917 CGAGTAAGACCACCTTTGATACGTTGGCATTGATATGTGATTCTGAT
66 CGAGTAAAACCACCTTTGAGACGTTGGCATCGATATGTGATTCTGAT
* *
80543964 ATATGTGTGCGAGTAAGGCCACGTTTAATATGTT-GCATCAATATGTGACTT-CAATAAATATGT
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGA-TTCCAATAAATATGT
*
80544027 GCGAGTAAAACC-CTGTTTGAGACAG-TGGCATCGATATGTGATT
65 GCGAGTAAAACCAC-CTTTGAGAC-GTTGGCATCGATATGTGATT
80544070 ACATGTAAGA
Statistics
Matches: 94, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
110 1 0.01
111 58 0.62
112 35 0.37
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (112 bp):
ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCAATAAATATGTG
CGAGTAAAACCACCTTTGAGACGTTGGCATCGATATGTGATTCTGAT
Found at i:80545526 original size:39 final size:39
Alignment explanation
Indices: 80545472--80545552 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
80545462 TAATACATTC
80545472 ATATTGCTAAGTTGTTAATGCCATGAATGCTATTGGATA
1 ATATTGCTAAGTTGTTAATGCCATGAATGCTATTGGATA
*
80545511 ATATTGCTAAGTTGTTAATGCCGTGAATGCTATTGGATA
1 ATATTGCTAAGTTGTTAATGCCATGAATGCTATTGGATA
80545550 ATA
1 ATA
80545553 AATTGTGTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (39 bp):
ATATTGCTAAGTTGTTAATGCCATGAATGCTATTGGATA
Found at i:80550702 original size:207 final size:208
Alignment explanation
Indices: 80550347--80550760 Score: 724
Period size: 207 Copynumber: 2.0 Consensus size: 208
80550337 GTATGGATTT
* *
80550347 GTATGAACATAAGGAACATTCGGTCTAAGCATAGTGTATTCAAATTTTGCATGTTTTGTGTTTTG
1 GTATGAACATAAGGAACATTCGGTCTAAGCACAGTGTATTCAAATTTGGCATGTTTTGTGTTTTG
*
80550412 TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATGTCAGGGTAAAATAGTATTTTGCCAATTTAT
66 TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATGTCAAGGTAAAATAGTATTTTGCCAATTTAT
*
80550477 GTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGAGTTTAATTTGAATATTTTTATGTAA
131 GTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGAGTTTAATTTGAATATGTTTATGTAA
80550542 CGACC-AAAAATA
196 CGACCTAAAAATA
* *
80550554 GTATGAACATAAGGAACGTTCGGTCTAAGCACAGTGTATTCAAATTTGGTATGTTTTGTGTTTTG
1 GTATGAACATAAGGAACATTCGGTCTAAGCACAGTGTATTCAAATTTGGCATGTTTTGTGTTTTG
*
80550619 TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATGTCAAGGTAAAATAGTAATTTT-CCCATTTA
66 TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATGTCAAGGTAAAATAGT-ATTTTGCCAATTTA
*
80550683 TGTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGTGTTTAATTTGAATATGTTTATGTA
130 TGTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGAGTTTAATTTGAATATGTTTATGTA
*
80550748 ACGCCCTAAAAAT
195 ACGACCTAAAAAT
80550761 CCCAAACTCC
Statistics
Matches: 196, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
207 185 0.94
208 11 0.06
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (208 bp):
GTATGAACATAAGGAACATTCGGTCTAAGCACAGTGTATTCAAATTTGGCATGTTTTGTGTTTTG
TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATGTCAAGGTAAAATAGTATTTTGCCAATTTAT
GTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGAGTTTAATTTGAATATGTTTATGTAA
CGACCTAAAAATA
Found at i:80557507 original size:28 final size:28
Alignment explanation
Indices: 80557475--80557539 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
80557465 ATTTACTAGA
*
80557475 ATACCCCTATGTATGCTAAATTACCATT
1 ATACCCCTATGTATGCTAAATGACCATT
*
80557503 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCTAAATGACCATT
80557531 ATACCCCTA
1 ATACCCCTA
80557540 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.34
Consensus pattern (28 bp):
ATACCCCTATGTATGCTAAATGACCATT
Done.