Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 245 of 316
Found at i:80800642 original size:12 final size:12
Alignment explanation
Indices: 80800625--80800655 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
80800615 CCCACACACT
80800625 CATGTGTCAGGC
1 CATGTGTCAGGC
80800637 CATGTGTCAGGC
1 CATGTGTCAGGC
80800649 CATGTGT
1 CATGTGT
80800656 TAGGTCGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.23, G:0.32, T:0.29
Consensus pattern (12 bp):
CATGTGTCAGGC
Found at i:80804214 original size:30 final size:29
Alignment explanation
Indices: 80804180--80804242 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 29
80804170 ATGAATTGGA
80804180 AGCTTTGGCACTAAATGTGCGATTTAAACT
1 AGCTTTGGCACTAAATGTGCGATTT-AACT
*
80804210 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAATGTGCGATTTAACT
80804239 AGCT
1 AGCT
80804243 CCGGCTACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 8 0.25
30 24 0.75
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACTAAATGTGCGATTTAACT
Found at i:80809255 original size:53 final size:54
Alignment explanation
Indices: 80809191--80809593 Score: 170
Period size: 54 Copynumber: 7.4 Consensus size: 54
80809181 AATACTTTAG
* * ** *
80809191 TTTACCAAATTACTGAAATACCTTCAAATTGTAAAATTACCAAAGTA-CCTCGA
1 TTTACAAAATTACTGAAATACCCTCAAATTACAAAATTACCAAAATACCCTCGA
*** * * *
80809244 TTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGA
1 TTTACAAAATTACTGAAATACCCTCAAATTACAAAATTACCAAAATACCCTCGA
** * * * ** *
80809298 TTTACAAAATTACCAAAATACCCTC-GATCAGTAAAATTATGAAAATACCCTAG-
1 TTTACAAAATTACTGAAATACCCTCAAATTA-CAAAATTACCAAAATACCCTCGA
* ** * * **** ** * *
80809351 TCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACTGAAATACCCTCAAATTACAAAATTACCAAAATACCCTCGA
** ** ** ** *
80809405 TTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACT-GG
1 TTTACAAAATTACTGAAATACCCTC-AAATTACAAAATTACCAAAATACC-CTCGA
*** * * * *
80809459 TTTGTGAAATTACCGAAATGCCCTCAATTTATAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACTGAAATACCCTCAAATTACAAAATTACCAAAATACCCTC-GA
* * * * * *** * * *
80809513 TTTACAAAGTTACAGAAATACCCTTAACTTTCTAAAAATTATGGAAATACCTTTGG
1 TTTACAAAATTACTGAAATACCCTCAAATTAC--AAAATTACCAAAATACCCTCGA
80809569 TTTAACAAAATTACTGAAATACCCT
1 TTT-ACAAAATTACTGAAATACCCT
80809594 TGGTTTGTAG
Statistics
Matches: 268, Mismatches: 69, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
53 75 0.28
54 153 0.57
55 3 0.01
56 18 0.07
57 19 0.07
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACTGAAATACCCTCAAATTACAAAATTACCAAAATACCCTCGA
Found at i:80809276 original size:27 final size:27
Alignment explanation
Indices: 80809191--80809536 Score: 168
Period size: 27 Copynumber: 12.9 Consensus size: 27
80809181 AATACTTTAG
* * * *
80809191 TTTACCAAATTACTGAAATACCTTCAA
1 TTTACAAAATTACTAAAATACCCTCGA
* ** * *
80809218 ATTGTAAAATTACCAAAGTA-CCTCGA
1 TTTACAAAATTACTAAAATACCCTCGA
****
80809244 TTTACAAAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGA
80809271 TTTACAAAATTACTAAAATACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGA
*
80809298 TTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGA
* * *
80809325 -TCAGTAAAATTA-TGAAAATACCCTAG-
1 TTTA-CAAAATTACT-AAAATACCCTCGA
* ** * * *
80809351 TCTGTAAAATTGCTAAAATACCCTTGG
1 TTTACAAAATTACTAAAATACCCTCGA
** ** *
80809378 TTTGTAAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACTAAAATACCCTCGA
** * *
80809405 TTTGTAAAATTACCAAAATACCC-CTA
1 TTTACAAAATTACTAAAATACCCTCGA
** * *
80809431 GTTTGTAAAATTACCAAAATACCACT-GG
1 -TTTACAAAATTACTAAAATACC-CTCGA
*** ** * *
80809459 TTTGTGAAATTACCGAAATGCCCTCAA
1 TTTACAAAATTACTAAAATACCCTCGA
* *
80809486 TTTATAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACTAAAATACCCTC-GA
*
80809513 TTTACAAAGTTAC-AGAAATACCCT
1 TTTACAAAATTACTA-AAATACCCT
80809537 TAACTTTCTA
Statistics
Matches: 252, Mismatches: 54, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
26 42 0.17
27 209 0.83
28 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TTTACAAAATTACTAAAATACCCTCGA
Found at i:80809320 original size:54 final size:54
Alignment explanation
Indices: 80809222--80809536 Score: 230
Period size: 54 Copynumber: 5.9 Consensus size: 54
80809212 CTTCAAATTG
* *****
80809222 TAAAATTACCAAAGTA-CCTCGATTTACAAAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
* * *
80809275 CAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
** * * ** * * * * *
80809328 GTAAAATTATGAAAATACCCTAG-TCTGTAAAATTGCTAAAATACCCTTGGTTTG
1 -TAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
* * ** * *
80809382 TAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGA-TTTA
* *** * * *
80809436 TAAAATTACCAAAATACCACT-GGTTTGTGAAATTACCGAAATGCCCTCAATTTA
1 TAAAATTACCAAAATACC-CTCGATTTACAAAATTACCAAAATACCCTCGATTTA
*
80809490 TAAAATTACCAAAATACCC-CTGATTTACAAAGTTA-CAGAAATACCCT
1 TAAAATTACCAAAATACCCTC-GATTTACAAAATTACCA-AAATACCCT
80809537 TAACTTTCTA
Statistics
Matches: 204, Mismatches: 48, Indels: 19
0.75 0.18 0.07
Matches are distributed among these distances:
53 54 0.26
54 146 0.72
55 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
Found at i:80809469 original size:81 final size:81
Alignment explanation
Indices: 80809276--80809510 Score: 294
Period size: 81 Copynumber: 2.9 Consensus size: 81
80809266 CTCGATTTAC
* * * ** * * ** **
80809276 AAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTATGAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
80809341 AATA-CCCTAGTCTGT
66 AATACCCCTAGTCTGT
* *
80809356 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
80809421 AATACCCCTAGTTTGT
66 AATACCCCTAGTCTGT
* * *
80809437 AAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAATGCCCTCAATTTATAAAATTACCA
1 AAAATTACCAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
80809501 AAATACCCCT
65 AAATACCCCT
80809511 GATTTACAAA
Statistics
Matches: 136, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
80 58 0.43
81 77 0.57
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCCTAGTCTGT
Found at i:80809532 original size:81 final size:81
Alignment explanation
Indices: 80809276--80809537 Score: 277
Period size: 81 Copynumber: 3.2 Consensus size: 81
80809266 CTCGATTTAC
* * * ** * * * **
80809276 AAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTATGA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTA-TAAAATTACCA
80809340 AAATA-CCCTAG-TCTGT
65 AAATACCCCTAGAT-TGT
* * *
80809356 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCAA
*
80809421 AATACCCCTAGTTTGT
66 AATACCCCTAGATTGT
* *
80809437 AAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAATGCCCTCAATTTATAAAATTACCA
1 AAAATTACCAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCA
80809501 AAATACCCCT-GATT-T
65 AAATACCCCTAGATTGT
80809516 ACAAAGTTA-CAGAAATACCCTT
1 A-AAA-TTACCA-AAATACCCTT
80809538 AACTTTCTAA
Statistics
Matches: 157, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
79 2 0.01
80 65 0.41
81 88 0.56
82 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCAA
AATACCCCTAGATTGT
Found at i:80809744 original size:27 final size:27
Alignment explanation
Indices: 80809653--80809744 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
80809643 ACCCCTATTA
* *
80809653 GGTAAAAAGACCATAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
80809680 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
80809707 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
80809734 GGTAAAATGAC
1 GGTAAAATGAC
80809745 GTATGTGCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:80810623 original size:25 final size:26
Alignment explanation
Indices: 80810523--80810658 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
80810513 GAGGAAGTGC
*
80810523 AAAAGGGCTTATGCCCCAGATTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
80810549 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
80810575 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
80810601 AAAAGGGCTT-TGTCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
80810626 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
80810649 AAAAGAGGCT
1 AAAAG-GGCT
80810659 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.05
24 8 0.08
25 30 0.30
26 57 0.57
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:80811827 original size:38 final size:38
Alignment explanation
Indices: 80811776--80812066 Score: 213
Period size: 38 Copynumber: 6.9 Consensus size: 38
80811766 ATGAAAAAAT
*
80811776 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
80811814 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAAC
* *
80811862 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAAC
* *
80811909 GTGGTGCTAAGTAGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* *
80811947 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAAC
* * *
80811994 GTAGTGCTAAGTGGATATACCACGATTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* *
80812032 GTGGTGCTAAGTGGATATGCCATGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGT
80812067 TAATTTGAAA
Statistics
Matches: 202, Mismatches: 24, Indels: 54
0.72 0.09 0.19
Matches are distributed among these distances:
38 87 0.43
39 2 0.01
40 7 0.03
41 4 0.02
44 4 0.02
45 6 0.03
47 59 0.29
48 33 0.16
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
Found at i:80811932 original size:47 final size:46
Alignment explanation
Indices: 80811810--80812017 Score: 261
Period size: 47 Copynumber: 4.6 Consensus size: 46
80811800 GTTATACGTG
* *
80811810 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAT-CAT
*
80811857 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG-ATCAT
* *
80811905 TAACGTGGTGCTAAGTAGATATACCACGGTTA-A-ACA-TG-----
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATCAT
*
80811943 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGA-TCAT
*
80811990 TAACGTAGTGCTAAGTGGATATACCACG
1 TAACGTGGTGCTAAGTGGATATACCACG
80812018 ATTAAACATG
Statistics
Matches: 139, Mismatches: 11, Indels: 21
0.81 0.06 0.12
Matches are distributed among these distances:
38 30 0.22
39 1 0.01
40 2 0.01
41 2 0.01
44 2 0.01
45 2 0.01
46 1 0.01
47 56 0.40
48 41 0.29
49 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (46 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATCAT
Found at i:80811964 original size:85 final size:85
Alignment explanation
Indices: 80811853--80812059 Score: 369
Period size: 85 Copynumber: 2.4 Consensus size: 85
80811843 ACATATTGAT
*
80811853 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAACGTAGTGCTA
*
80811918 AGTAGATATACCACGGTTAA
66 AGTAGATATACCACGATTAA
*
80811938 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAACGTAGTGCTA
*
80812003 AGTGGATATACCACGATTAA
66 AGTAGATATACCACGATTAA
*
80812023 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
80812060 TACATGTTAA
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 117 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAACGTAGTGCTA
AGTAGATATACCACGATTAA
Found at i:80815908 original size:15 final size:15
Alignment explanation
Indices: 80815888--80815929 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
80815878 GCTGTAAATG
80815888 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
80815903 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
*
80815918 AGATTTCCTTAT
1 GGATTTCCTTAT
80815930 TCTGGGCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:80818696 original size:38 final size:38
Alignment explanation
Indices: 80818645--80818938 Score: 212
Period size: 38 Copynumber: 7.0 Consensus size: 38
80818635 GAAATGAAAA
*
80818645 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
*
80818683 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGT
*
80818731 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTAAATCAT-T
1 AACGTGGTGCTAAGTGGATATACCACGG-----T-TA-T--A-CATGT
* *
80818778 AACGTGGTGCTAAGTAGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
80818816 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* * *
80818863 AACGTAGTGCTAAGTGGATATACCACGATTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
80818901 AACGTGGTGCTAAGTGGATATGCCATGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
80818939 TAATTTGAAA
Statistics
Matches: 205, Mismatches: 21, Indels: 60
0.72 0.07 0.21
Matches are distributed among these distances:
37 3 0.01
38 91 0.44
40 3 0.01
41 4 0.02
42 1 0.00
44 4 0.02
45 5 0.02
47 58 0.28
48 36 0.18
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
Found at i:80818804 original size:47 final size:48
Alignment explanation
Indices: 80818680--80818889 Score: 239
Period size: 47 Copynumber: 4.6 Consensus size: 48
80818670 CGGTTATACG
* * *
80818680 TGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATT-GATACA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTAAAT-CA
*
80818728 TGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTAAATCA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTAAATCA
*
80818776 T-TAACGTGGTGCTAAGTAGATATACCACGG---------TTAAA-CA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTAAATCA
* * *
80818813 TGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTAAATCA
*
80818861 T-TAACGTAGTGCTAAGTGGATATACCACG
1 TGTAACGTGGTGCTAAGTGGATATACCACG
80818890 ATTAAACATG
Statistics
Matches: 138, Mismatches: 12, Indels: 25
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.02
38 32 0.23
47 56 0.41
48 45 0.33
49 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (48 bp):
TGTAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTAAATCA
Found at i:80818837 original size:85 final size:85
Alignment explanation
Indices: 80818725--80818931 Score: 360
Period size: 85 Copynumber: 2.4 Consensus size: 85
80818715 ACATATTGAT
*
80818725 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTAAATCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTAAATCATTAACGTAGTGCTA
*
80818790 AGTAGATATACCACGGTTAA
66 AGTAGATATACCACGATTAA
* *
80818810 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTAAATCATTAACGTAGTGCTA
*
80818875 AGTGGATATACCACGATTAA
66 AGTAGATATACCACGATTAA
*
80818895 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
80818932 TACATGTTAA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 116 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTAAATCATTAACGTAGTGCTA
AGTAGATATACCACGATTAA
Found at i:80820993 original size:48 final size:48
Alignment explanation
Indices: 80820821--80821002 Score: 146
Period size: 48 Copynumber: 3.9 Consensus size: 48
80820811 TATCCTAGAT
* *
80820821 ATGGTCTTACATGGGACCACATAACGATGCCAATGCCATGTCCAAGAC
1 ATGGTCTTACATGGGATCACATAACGATGCCAATGCCATGTCCCAGAC
* * *
80820869 ATGGTCTTACATGGGATATCACATATC-AAGGC--TG--ATAG-CCCAG-C
1 ATGGTCTTACATGGG--ATCACATAACGATGCCAATGCCAT-GTCCCAGAC
* * * * * ** *
80820913 TATAGTCTTACACGATG-TCTCATTATAATGCCAATGCCATGTCCCGGAC
1 -ATGGTCTTACATG-GGATCACATAACGATGCCAATGCCATGTCCCAGAC
80820962 ATGGTCTTACATGGGATCACATAACGATGCCAATGCCATGT
1 ATGGTCTTACATGGGATCACATAACGATGCCAATGCCATGT
80821003 TCTTACATGG
Statistics
Matches: 99, Mismatches: 22, Indels: 26
0.67 0.15 0.18
Matches are distributed among these distances:
43 5 0.05
44 4 0.04
45 17 0.17
46 4 0.04
47 4 0.04
48 53 0.54
49 4 0.04
50 8 0.08
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATAACGATGCCAATGCCATGTCCCAGAC
Found at i:80829694 original size:40 final size:39
Alignment explanation
Indices: 80829663--80829833 Score: 254
Period size: 39 Copynumber: 4.3 Consensus size: 39
80829653 GGACTAAGAT
80829663 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
80829702 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
80829741 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* * *
80829781 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-C
80829821 CCGAAGGCATTTG
1 CCGAAGGCATTTG
80829834 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
39 75 0.61
40 48 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:80829711 original size:39 final size:40
Alignment explanation
Indices: 80829609--80829833 Score: 266
Period size: 40 Copynumber: 5.7 Consensus size: 40
80829599 TTTGAATGAT
* * *
80829609 TTCCGGGCTAAGTCCCGAAGG-TTTTGTGCTA-AGTGAC-CA
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA
*
80829648 TATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 T-TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA
80829689 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAA
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
*
80829728 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
* * *
80829767 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-A
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
* *
80829806 TAACCGGGCTATGTCCCGAAGGCATTTG
1 T-TCCGGGCTAAGTCCCGAAGGCATTTG
80829834 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
39 76 0.46
40 77 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:80829797 original size:79 final size:79
Alignment explanation
Indices: 80829610--80829833 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 79
80829600 TTGAATGATT
* * * * *
80829610 TCCGGGCTAAGTCCCGAAGG-TTTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
80829672 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
*
80829690 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
*
80829753 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * *
80829768 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
80829833 G
65 G
80829834 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 36 0.28
79 55 0.43
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:80829855 original size:79 final size:79
Alignment explanation
Indices: 80829663--80829866 Score: 220
Period size: 79 Copynumber: 2.6 Consensus size: 79
80829653 GGACTAAGAT
** * *
80829663 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT
*
80829726 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** * *
80829741 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
*
80829805 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * *
80829821 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
80829867 TATGTGATTT
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
77 1 0.01
78 36 0.33
79 48 0.44
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:80837761 original size:39 final size:40
Alignment explanation
Indices: 80837660--80837883 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
80837650 TTGAATGATG
* * * *
80837660 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAATGGC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAT-ACTAAT
*
80837699 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
80837740 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
80837779 TCCGGGCTAAG-CCCGAAGGCATTTGTGGGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
80837818 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80837857 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80837884 AATGAGGAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 73 0.45
40 75 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:80837834 original size:79 final size:79
Alignment explanation
Indices: 80837664--80837883 Score: 241
Period size: 79 Copynumber: 2.8 Consensus size: 79
80837654 ATGATGTCCG
* * * * * *
80837664 GGCTAAGTCCCGAAGGC-TTTGTGCTAAATGGCCATATCCGGACTAAGAT-CCGAAGGCATTTGT
1 GGCTAAG-CCCGAAGGCATTTGTGCGAGAT-ACTATAACCGGGCTAAG-TCCCGAAGGCATTTGT
* *
80837727 GCGAGATACTAATTCCG
63 GCGAGATACTAAATCCA
* *
80837744 GGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGG
1 GGCTAAGCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGC
*
80837807 GAGTTACTAAATCCA
65 GAGATACTAAATCCA
* * *
80837822 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 GGCTAAG-CCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
80837884 AATGAGGAGC
Statistics
Matches: 121, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 34 0.28
79 55 0.45
80 32 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
GGCTAAGCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCG
AGATACTAAATCCA
Found at i:80837906 original size:79 final size:77
Alignment explanation
Indices: 80837713--80837883 Score: 211
Period size: 78 Copynumber: 2.2 Consensus size: 77
80837703 GGACTAAGAT
* * * *
80837713 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGGGAG-T-CTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
*
80837777 ATTCCGGGCTAAGC
64 ATACCGGGCTAAGC
*
80837791 CCGAAGGCATTTGTGGGAGTTACTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGGGAG-T-CTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
*
80837855 ATAACCGGGCTATGTC
64 AT-ACCGGGCTAAG-C
80837871 CCGAAGGCATTTG
1 CCGAAGGCATTTG
80837884 AATGAGGAGC
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 35 0.43
79 33 0.40
80 14 0.17
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGGGAGTCTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
ACCGGGCTAAGC
Found at i:80837914 original size:79 final size:77
Alignment explanation
Indices: 80837713--80837916 Score: 200
Period size: 79 Copynumber: 2.6 Consensus size: 77
80837703 GGACTAAGAT
* * * * *
80837713 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGGGAG-T-CTAAATCCAGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
80837777 ATTCCGGGCTAAGC
64 ATACCGGGCTAAGC
* *
80837791 CCGAAGGCATTTGTGGGAGTTACTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGGGAG-T-CTAAATCCAGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
80837855 ATAACCGGGCTATGTC
64 AT-ACCGGGCTAAG-C
* *
80837871 CCGAAGGCATTTGAATGAGGAG-CTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTG--TG-GGAGTCTAAATCCAGGTTAAATCCCGAAGG
80837917 TACGTGATTT
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 32 0.30
79 48 0.45
80 21 0.20
82 2 0.02
83 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGGGAGTCTAAATCCAGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAAT
ACCGGGCTAAGC
Found at i:80839960 original size:48 final size:48
Alignment explanation
Indices: 80839888--80840114 Score: 166
Period size: 48 Copynumber: 4.8 Consensus size: 48
80839878 TAGGGGTGCT
* * *
80839888 AATGCCATATCCCAGATATGGTCTTACATGAGACCACATAACGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGAGATCACATAACGATGCC
* * *
80839936 GATGCCATGTCCCAGACATGGTCTTACATGAGATCACACATA--TTG--
1 AATGCCATGTCCCAGACATGGTCTTACATGAGATCACATA-ACGATGCC
* * * * ** *** *
80839981 AGGTG--ATAG-CCCAG-CTATTGTCATACACGATG-TCTTATTGTGATGTC
1 A-ATGCCAT-GTCCCAGAC-ATGGTCTTACATGA-GATCACATAACGATGCC
* *
80840028 AATGCCATGTCCCAGACATGGTCTTACACGAGATAACATAACGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGAGATCACATAACGATGCC
* *
80840076 AAAGCCATGTCCCAGACATGGTCTTACATGGGATCACAT
1 AATGCCATGTCCCAGACATGGTCTTACATGAGATCACAT
80840115 GTCACTGTCA
Statistics
Matches: 134, Mismatches: 31, Indels: 28
0.69 0.16 0.15
Matches are distributed among these distances:
43 1 0.01
44 21 0.16
45 4 0.03
46 4 0.03
47 5 0.04
48 97 0.72
49 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
AATGCCATGTCCCAGACATGGTCTTACATGAGATCACATAACGATGCC
Found at i:80844649 original size:18 final size:18
Alignment explanation
Indices: 80844626--80844661 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
80844616 GGTGAGATCG
80844626 AGAATTGGAAATAAATCT
1 AGAATTGGAAATAAATCT
80844644 AGAATTGGAAATAAATCT
1 AGAATTGGAAATAAATCT
80844662 GGATATCACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.17, T:0.28
Consensus pattern (18 bp):
AGAATTGGAAATAAATCT
Found at i:80875643 original size:12 final size:12
Alignment explanation
Indices: 80875626--80875650 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80875616 GTTTGGCACA
80875626 GCCTAGCACACG
1 GCCTAGCACACG
80875638 GCCTAGCACACG
1 GCCTAGCACACG
80875650 G
1 G
80875651 GCATGTATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACG
Found at i:80876428 original size:54 final size:54
Alignment explanation
Indices: 80876361--80876467 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
80876351 CCGTGTGGCC
* * *
80876361 CAAGTTAGAGAGTTACACGGG-TAGAGACACGGGCTGGGACACAGTCATGTGTCT
1 CAAGTCAGAGAGTTACACGGGCAAG-GACACGGGCTGGGACACAGCCATGTGTCT
* *
80876415 CAAGTCAGTGAGTTACACGGGCAAGGAGACGGGCTGGGACACAGCCATGTGTC
1 CAAGTCAGAGAGTTACACGGGCAAGGACACGGGCTGGGACACAGCCATGTGTC
80876468 CCCATTTTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 45 0.96
55 2 0.04
ACGTcount: A:0.27, C:0.21, G:0.35, T:0.18
Consensus pattern (54 bp):
CAAGTCAGAGAGTTACACGGGCAAGGACACGGGCTGGGACACAGCCATGTGTCT
Found at i:80876662 original size:21 final size:22
Alignment explanation
Indices: 80876622--80876662 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80876612 CGTTTAGTTC
*
80876622 TAAAATCATTTTTAAGGACTTG
1 TAAAATCATATTTAAGGACTTG
*
80876644 TAAACTCATATTT-AGGACT
1 TAAAATCATATTTAAGGACT
80876663 GTATGCATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (22 bp):
TAAAATCATATTTAAGGACTTG
Found at i:80881926 original size:11 final size:11
Alignment explanation
Indices: 80881897--80881956 Score: 75
Period size: 11 Copynumber: 5.3 Consensus size: 11
80881887 TAAAAAATTA
*
80881897 ATTTTTTTAAT
1 ATTTTTTTATT
80881908 ATTATTTTTATT
1 ATT-TTTTTATT
*
80881920 ATTTTTTTCTGT
1 ATTTTTTTAT-T
80881932 ATTTTTTTATT
1 ATTTTTTTATT
*
80881943 ATTTTGTTATT
1 ATTTTTTTATT
80881954 ATT
1 ATT
80881957 GTTTGGATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
11 23 0.53
12 20 0.47
ACGTcount: A:0.20, C:0.02, G:0.03, T:0.75
Consensus pattern (11 bp):
ATTTTTTTATT
Found at i:80881927 original size:23 final size:22
Alignment explanation
Indices: 80881897--80881956 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
80881887 TAAAAAATTA
80881897 ATTTTTTTAATATTATTTTTATT
1 ATTTTTTTAATATT-TTTTTATT
**
80881920 ATTTTTTTCTGTATTTTTTTATT
1 ATTTTTTT-AATATTTTTTTATT
* *
80881943 ATTTTGTTATTATT
1 ATTTTTTTAATATT
80881957 GTTTGGATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 4 0.13
23 23 0.74
24 4 0.13
ACGTcount: A:0.20, C:0.02, G:0.03, T:0.75
Consensus pattern (22 bp):
ATTTTTTTAATATTTTTTTATT
Found at i:80902947 original size:44 final size:45
Alignment explanation
Indices: 80902852--80902985 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 45
80902842 ACAGGACAGA
* * *
80902852 ACAGAAATGAGCCATGTAATTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
80902898 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
80902942 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
80902986 CAGGGTATTG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 36 0.49
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:80908333 original size:33 final size:33
Alignment explanation
Indices: 80908291--80908358 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
80908281 TCCTTGAATC
80908291 TCAAAGTCTTATGCAAGTTCTAGCAAAATTCTT
1 TCAAAGTCTTATGCAAGTTCTAGCAAAATTCTT
80908324 TCAAAGTCTTATGCAAGTTCTAGCAAAATTCTT
1 TCAAAGTCTTATGCAAGTTCTAGCAAAATTCTT
80908357 TC
1 TC
80908359 CTGATTTTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (33 bp):
TCAAAGTCTTATGCAAGTTCTAGCAAAATTCTT
Found at i:80908685 original size:31 final size:32
Alignment explanation
Indices: 80908647--80908734 Score: 133
Period size: 31 Copynumber: 2.8 Consensus size: 32
80908637 TTTCTTCTTG
*
80908647 ACATTCCAGCTACTGTCCAGCAACCAAACA-C
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACC
*
80908678 ACATTCCAGCTCCCGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACAC-C
*
80908711 ACATTCCAGCTCCTATCCAGCAAC
1 ACATTCCAGCTCCTGTCCAGCAAC
80908735 ATGAAACAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
31 28 0.55
33 23 0.45
ACGTcount: A:0.32, C:0.42, G:0.09, T:0.17
Consensus pattern (32 bp):
ACATTCCAGCTCCTGTCCAGCAACCAAACACC
Found at i:80908885 original size:12 final size:12
Alignment explanation
Indices: 80908870--80908904 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
80908860 GAGGTAATTG
80908870 CTGAACCTACTA
1 CTGAACCTACTA
80908882 CTGAACCTACTA
1 CTGAACCTACTA
*
80908894 CTGAAACTACT
1 CTGAACCTACT
80908905 GAAAATTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.34, C:0.31, G:0.09, T:0.26
Consensus pattern (12 bp):
CTGAACCTACTA
Found at i:80912355 original size:12 final size:12
Alignment explanation
Indices: 80912338--80912362 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80912328 AGTGATACAA
80912338 AGTTAGGAGTAG
1 AGTTAGGAGTAG
80912350 AGTTAGGAGTAG
1 AGTTAGGAGTAG
80912362 A
1 A
80912363 AAATATTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.40, T:0.24
Consensus pattern (12 bp):
AGTTAGGAGTAG
Found at i:80916480 original size:26 final size:24
Alignment explanation
Indices: 80916430--80916479 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
80916420 ACCCTAATGA
80916430 TTAATATATATTATATCAATTTTT
1 TTAATATATATTATATCAATTTTT
80916454 TTAATATATATTATATCAATTTTT
1 TTAATATATATTATATCAATTTTT
80916478 TT
1 TT
80916480 TCTTATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (24 bp):
TTAATATATATTATATCAATTTTT
Found at i:80919229 original size:13 final size:14
Alignment explanation
Indices: 80919211--80919240 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
80919201 AGTTTTACTT
80919211 TTATTTTTAAT-TA
1 TTATTTTTAATATA
80919224 TTATTTTTAATATA
1 TTATTTTTAATATA
80919238 TTA
1 TTA
80919241 GCTTCTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTTTTAATATA
Found at i:80919375 original size:13 final size:13
Alignment explanation
Indices: 80919357--80919381 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80919347 CTTATTTTTA
80919357 TTTTTAATTAATG
1 TTTTTAATTAATG
80919370 TTTTTAATTAAT
1 TTTTTAATTAAT
80919382 AAATATATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:80920020 original size:13 final size:13
Alignment explanation
Indices: 80920002--80920026 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80919992 CAATATATTT
80920002 ATTAATTAAAAAC
1 ATTAATTAAAAAC
80920015 ATTAATTAAAAA
1 ATTAATTAAAAA
80920027 AAAACTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:80924450 original size:59 final size:59
Alignment explanation
Indices: 80924377--80924497 Score: 233
Period size: 59 Copynumber: 2.1 Consensus size: 59
80924367 CGAGCTCTGG
80924377 CTTGTAATCCTTCTCGTTCACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
1 CTTGTAATCCTTCTCGTTCACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
*
80924436 CTTGTAATCCTTCTCGTTTACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
1 CTTGTAATCCTTCTCGTTCACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
80924495 CTT
1 CTT
80924498 CTTATCACCA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (59 bp):
CTTGTAATCCTTCTCGTTCACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
Found at i:80924822 original size:8 final size:8
Alignment explanation
Indices: 80924809--80924836 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
80924799 AGGAGGGCCA
80924809 AATTGAAG
1 AATTGAAG
80924817 AATTGAAG
1 AATTGAAG
80924825 AATTGAAG
1 AATTGAAG
80924833 AATT
1 AATT
80924837 ATTGGTTGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (8 bp):
AATTGAAG
Found at i:80930883 original size:8 final size:8
Alignment explanation
Indices: 80930870--80930897 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
80930860 AGGAGGGCCA
80930870 AATTGAAG
1 AATTGAAG
80930878 AATTGAAG
1 AATTGAAG
80930886 AATTGAAG
1 AATTGAAG
80930894 AATT
1 AATT
80930898 ATTGGTTGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (8 bp):
AATTGAAG
Found at i:80935852 original size:9 final size:9
Alignment explanation
Indices: 80935827--80935863 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
80935817 AAATTTGTTG
80935827 GAAAAAAATA
1 GAAAAAAA-A
80935837 GAGAAAAAAA
1 GA-AAAAAAA
80935847 GAAAAAAAA
1 GAAAAAAAA
80935856 GAAAAAAA
1 GAAAAAAA
80935864 TATTGAGCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 15 0.58
10 5 0.19
11 6 0.23
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.03
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:80939330 original size:3 final size:3
Alignment explanation
Indices: 80939322--80939352 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
80939312 GTCACCCCCA
80939322 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
80939353 TTATTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:80947169 original size:46 final size:46
Alignment explanation
Indices: 80947102--80947247 Score: 188
Period size: 46 Copynumber: 3.2 Consensus size: 46
80947092 GGAAAATGAT
80947102 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
* * * *
80947148 TAAGACCATAATTGAAAGACACTATGACACTAT-CCCGAAGGATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAG-AGAATAAA
* * * * *
80947194 TAAGACCATAGTTGAAAGATACTATGGCACCATAGCAGA-AATGAG
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
80947239 TAAGACCAT
1 TAAGACCAT
80947248 GACGGAAAGA
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
45 15 0.18
46 68 0.80
47 2 0.02
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.20
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
Found at i:80947285 original size:45 final size:45
Alignment explanation
Indices: 80947236--80947426 Score: 276
Period size: 45 Copynumber: 4.3 Consensus size: 45
80947226 TAGCAGAAAT
* * * *
80947236 GAGTAAGACCATGACGGAAAGACATTATGACATCATGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
*
80947281 GAGTAAGACCATGACTGAAAGATGTT-TGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
* *
80947325 GAGTAAGACTATGACTGAAAGACGTTATGGCATCACGATTCTATT
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
* * *
80947370 AAGTAAGACCATGATTGAGAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
*
80947415 AAGTAAGACCAT
1 GAGTAAGACCAT
80947427 AGCTAAAAGA
Statistics
Matches: 132, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
44 40 0.30
45 92 0.70
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (45 bp):
GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
Found at i:80947339 original size:89 final size:90
Alignment explanation
Indices: 80947236--80947426 Score: 276
Period size: 89 Copynumber: 2.1 Consensus size: 90
80947226 TAGCAGAAAT
* *
80947236 GAGTAAGACCATGACGGAAAGACATTATGACATCATGATTCTATCGAGTAAGACCATGACTGAAA
1 GAGTAAGACCATGACGGAAAGACATTATGACATCACGATTCTATCAAGTAAGACCATGACTGAAA
*
80947301 GATGTT-TGGCATCACGATTCTATC
66 GACGTTATGGCATCACGATTCTATC
* * * * * * *
80947325 GAGTAAGACTATGACTGAAAGACGTTATGGCATCACGATTCTATTAAGTAAGACCATGATTGAGA
1 GAGTAAGACCATGACGGAAAGACATTATGACATCACGATTCTATCAAGTAAGACCATGACTGAAA
80947390 GACGTTATGGCATCACGATTCTATC
66 GACGTTATGGCATCACGATTCTATC
*
80947415 AAGTAAGACCAT
1 GAGTAAGACCAT
80947427 AGCTAAAAGA
Statistics
Matches: 89, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 61 0.69
90 28 0.31
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (90 bp):
GAGTAAGACCATGACGGAAAGACATTATGACATCACGATTCTATCAAGTAAGACCATGACTGAAA
GACGTTATGGCATCACGATTCTATC
Found at i:80947450 original size:90 final size:89
Alignment explanation
Indices: 80947237--80947450 Score: 243
Period size: 89 Copynumber: 2.4 Consensus size: 89
80947227 AGCAGAAATG
** ** * * *
80947237 AGTAAGACCATGACGGAAAGACATTATGACATCATGATTCTATCGAGTAAGACCATGACTGAAAG
1 AGTAAGACCATGACTAAAAGACGCTATGAGATCACGATTCTATCAAGTAAGACCATGACTGAAAG
* *
80947302 ATGTTTGGCATCACGATTCTATCG
66 ACGTTTGGCATCACGATTCTATCA
* * * * * *
80947326 AGTAAGACTATGACTGAAAGACGTTATG-GCATCACGATTCTATTAAGTAAGACCATGATTGAGA
1 AGTAAGACCATGACTAAAAGACGCTATGAG-ATCACGATTCTATCAAGTAAGACCATGACTGAAA
80947390 GACGTTATGGCATCACGATTCTATCA
65 GACGTT-TGGCATCACGATTCTATCA
*
80947416 AGTAAGACCAT-AGCTAAAAGATGCTATGAGATCAC
1 AGTAAGACCATGA-CTAAAAGACGCTATGAGATCAC
80947451 AAATCAAACA
Statistics
Matches: 106, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
89 60 0.57
90 45 0.42
91 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (89 bp):
AGTAAGACCATGACTAAAAGACGCTATGAGATCACGATTCTATCAAGTAAGACCATGACTGAAAG
ACGTTTGGCATCACGATTCTATCA
Found at i:80947467 original size:90 final size:89
Alignment explanation
Indices: 80947284--80947482 Score: 213
Period size: 90 Copynumber: 2.2 Consensus size: 89
80947274 TTCTATCGAG
* * * * *
80947284 TAAGACCATGACTGAAAGATGTTTGGCATCACGATTCTATCGAGTAAGACTATGACTGAAAGACG
1 TAAGACCATGATTGAAAGACGTTTGGCATCACGATTCTATCAAGTAAGACCATGACTAAAAGACG
* * * * ** *
80947349 TTATGGCATCACGATTCTATTAAG
66 CTATGGCATCACAAATCAAACAAA
*
80947373 TAAGACCATGATTGAGAGACGTTATGGCATCACGATTCTATCAAGTAAGACCAT-AGCTAAAAGA
1 TAAGACCATGATTGAAAGACGTT-TGGCATCACGATTCTATCAAGTAAGACCATGA-CTAAAAGA
*
80947437 TGCTATGAG-ATCACAAATCAAACAAA
64 CGCTATG-GCATCACAAATCAAACAAA
* *
80947463 TAAGATCATGGTTGAAAGAC
1 TAAGACCATGATTGAAAGAC
80947483 ACTCTGGCAA
Statistics
Matches: 90, Mismatches: 17, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
89 21 0.23
90 68 0.76
91 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (89 bp):
TAAGACCATGATTGAAAGACGTTTGGCATCACGATTCTATCAAGTAAGACCATGACTAAAAGACG
CTATGGCATCACAAATCAAACAAA
Found at i:80947511 original size:46 final size:45
Alignment explanation
Indices: 80947456--80947628 Score: 220
Period size: 46 Copynumber: 3.8 Consensus size: 45
80947446 ATCACAAATC
* *
80947456 AAACAAATAAGATCATGGTTGAAAGACACTCTGGCAACACGATGGA
1 AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACGAT-GA
* *
80947502 AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACAACAGA
1 AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACGA-TGA
** * * *
80947548 AAATGAATAAGACCATGGCTGAAAGACACTATGGCATCAAGATGA
1 AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACGATGA
* * *
80947593 GAATAAATAAGACCATGGTTGAAAGACACCATGGCA
1 AAACAAATAAGACCATGGTTGAAAGACACTATGGCA
80947629 TACTCTGATC
Statistics
Matches: 111, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
45 34 0.31
46 77 0.69
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (45 bp):
AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACGATGA
Found at i:80947543 original size:91 final size:91
Alignment explanation
Indices: 80947456--80947628 Score: 247
Period size: 92 Copynumber: 1.9 Consensus size: 91
80947446 ATCACAAATC
* * * *
80947456 AAACAAATAAGATCATGGTTGAAAGACACTCTGGCAACACGATGGAAAACAAATAAGACCATGGT
1 AAACAAATAAGACCATGGCTGAAAGACACTATGGCAACAAGAT-GAAAACAAATAAGACCATGGT
*
80947521 TGAAAGACACTATGGCAACACAACAGA
65 TGAAAGACACCATGGCAACACAACAGA
** * * *
80947548 AAATGAATAAGACCATGGCTGAAAGACACTATGGCATCAAGATGAGAATAAATAAGACCATGGTT
1 AAACAAATAAGACCATGGCTGAAAGACACTATGGCAACAAGATGAAAACAAATAAGACCATGGTT
80947613 GAAAGACACCATGGCA
66 GAAAGACACCATGGCA
80947629 TACTCTGATC
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
91 35 0.49
92 36 0.51
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (91 bp):
AAACAAATAAGACCATGGCTGAAAGACACTATGGCAACAAGATGAAAACAAATAAGACCATGGTT
GAAAGACACCATGGCAACACAACAGA
Found at i:80947583 original size:92 final size:91
Alignment explanation
Indices: 80947461--80947628 Score: 255
Period size: 91 Copynumber: 1.8 Consensus size: 91
80947451 AAATCAAACA
* * * *
80947461 AATAAGATCATGGTTGAAAGACACTCTGGCAACACGATGGAAAACAAATAAGACCATGGTTGAAA
1 AATAAGACCATGGCTGAAAGACACTATGGCAACAAGAT-GAAAACAAATAAGACCATGGTTGAAA
*
80947526 GACACTATGGCAACACAACAGAAAATG
65 GACACCATGGCAACACAACAGAAAATG
* * *
80947553 AATAAGACCATGGCTGAAAGACACTATGGCATCAAGATGAGAATAAATAAGACCATGGTTGAAAG
1 AATAAGACCATGGCTGAAAGACACTATGGCAACAAGATGAAAACAAATAAGACCATGGTTGAAAG
80947618 ACACCATGGCA
66 ACACCATGGCA
80947629 TACTCTGATC
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
91 35 0.51
92 33 0.49
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (91 bp):
AATAAGACCATGGCTGAAAGACACTATGGCAACAAGATGAAAACAAATAAGACCATGGTTGAAAG
ACACCATGGCAACACAACAGAAAATG
Found at i:80953306 original size:48 final size:48
Alignment explanation
Indices: 80953235--80953332 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
80953225 TAGAAATCAA
80953235 GTCAGTATGCTCCACACGGTCCAGCACACAGGCGTGTGACTTGTTCAT
1 GTCAGTATGCTCCACACGGTCCAGCACACAGGCGTGTGACTTGTTCAT
80953283 GTCAGTATGCTCCACACGGTCCAGCACACAGGCGTGTGACTTGTTCAT
1 GTCAGTATGCTCCACACGGTCCAGCACACAGGCGTGTGACTTGTTCAT
80953331 GT
1 GT
80953333 GGCATAAGTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.26
Consensus pattern (48 bp):
GTCAGTATGCTCCACACGGTCCAGCACACAGGCGTGTGACTTGTTCAT
Found at i:80954432 original size:22 final size:22
Alignment explanation
Indices: 80954406--80954454 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
80954396 CCGTAGAGTC
* *
80954406 TCATACTACCCTTAAAGGGATT
1 TCATACTACCCGTAAAAGGATT
* *
80954428 TCATACTACTCGTAAAAGGCTT
1 TCATACTACCCGTAAAAGGATT
80954450 TCATA
1 TCATA
80954455 ACTATGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (22 bp):
TCATACTACCCGTAAAAGGATT
Found at i:80957915 original size:28 final size:28
Alignment explanation
Indices: 80957884--80957953 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
80957874 ATATATGTAT
80957884 ATGGCACTTAGTGTGAAAAATATTAAGA
1 ATGGCACTTAGTGTGAAAAATATTAAGA
* ** * * *
80957912 ATGGCACTTGGTGTGTGAGATATTGAGT
1 ATGGCACTTAGTGTGAAAAATATTAAGA
*
80957940 ATGACACTTAGTGT
1 ATGGCACTTAGTGT
80957954 ACGAGACATC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.33
Consensus pattern (28 bp):
ATGGCACTTAGTGTGAAAAATATTAAGA
Found at i:80961409 original size:17 final size:17
Alignment explanation
Indices: 80961378--80961435 Score: 86
Period size: 16 Copynumber: 3.6 Consensus size: 17
80961368 TATTATTTGA
*
80961378 ATAACCTTTTT-AATCC
1 ATAACCTTTTTCAATCG
80961394 ATAACCTTTTTCAATCG
1 ATAACCTTTTTCAATCG
80961411 ATAACC-TTTTC-ATCG
1 ATAACCTTTTTCAATCG
80961426 ATAACCTTTT
1 ATAACCTTTT
80961436 CATTGTAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
15 10 0.26
16 19 0.49
17 10 0.26
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.43
Consensus pattern (17 bp):
ATAACCTTTTTCAATCG
Found at i:80961427 original size:15 final size:15
Alignment explanation
Indices: 80961378--80961469 Score: 96
Period size: 15 Copynumber: 5.9 Consensus size: 15
80961368 TATTATTTGA
* *
80961378 ATAACCTTTTTAATCC
1 ATAACC-TTTTCATCG
80961394 ATAACCTTTTTCAATCG
1 ATAACC-TTTTC-ATCG
80961411 ATAACCTTTTCATCG
1 ATAACCTTTTCATCG
*
80961426 ATAACCTTTTCATTG
1 ATAACCTTTTCATCG
* *
80961441 -TAAACCTTTTCGTCA
1 AT-AACCTTTTCATCG
80961456 ATAACCTTTTCATC
1 ATAACCTTTTCATC
80961470 CTTTTCATTG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
14 1 0.02
15 39 0.59
16 17 0.26
17 9 0.14
ACGTcount: A:0.28, C:0.25, G:0.04, T:0.42
Consensus pattern (15 bp):
ATAACCTTTTCATCG
Found at i:80961662 original size:14 final size:15
Alignment explanation
Indices: 80961638--80961666 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80961628 ACATCATAAT
80961638 TTTATAATGAAATAC
1 TTTATAATGAAATAC
80961653 TTTA-AATGAAATAC
1 TTTATAATGAAATAC
80961667 AAACTTACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (15 bp):
TTTATAATGAAATAC
Found at i:80962758 original size:22 final size:22
Alignment explanation
Indices: 80962730--80962774 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
80962720 GAAAATCTTA
80962730 CTAGAAATAGGTCCGGGTTTTG
1 CTAGAAATAGGTCCGGGTTTTG
80962752 CTAGAAATAGGTCCGGGTTTTG
1 CTAGAAATAGGTCCGGGTTTTG
80962774 C
1 C
80962775 ACTTTCATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (22 bp):
CTAGAAATAGGTCCGGGTTTTG
Found at i:80964474 original size:22 final size:22
Alignment explanation
Indices: 80964436--80964477 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
80964426 TAGCAATTCT
*
80964436 GACATTCTAATCTCTGTGTTAC
1 GACATTCTAATCCCTGTGTTAC
80964458 GACATT-TAACTCCCTGTGTT
1 GACATTCTAA-TCCCTGTGTT
80964478 GCAACATAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (22 bp):
GACATTCTAATCCCTGTGTTAC
Found at i:80969672 original size:14 final size:14
Alignment explanation
Indices: 80969653--80969682 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80969643 TTTTTTAGCT
80969653 TATTTTATTAAATA
1 TATTTTATTAAATA
*
80969667 TATTTTTTTAAATA
1 TATTTTATTAAATA
80969681 TA
1 TA
80969683 ATAAACCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TATTTTATTAAATA
Found at i:80980100 original size:273 final size:273
Alignment explanation
Indices: 80979613--80980165 Score: 1007
Period size: 273 Copynumber: 2.0 Consensus size: 273
80979603 TGCTTCAAGG
*
80979613 CAGTTGAAGATACATGGGTGAAACTACCCTACTCATGATTTGGAGTTAGCTGCTGTGGGTTTTGC
1 CAGTTGAAGATACATGGGTGAAACAACCCTACTCATGATTTGGAGTTAGCTGCTGTGGGTTTTGC
*
80979678 ACTTAAGATTTGGCGTCATTATTTGTATAGGGAAAGGTGTGTTATCTATATAGATCATAAGAGCC
66 ACTCAAGATTTGGCGTCATTATTTGTATAGGGAAAGGTGTGTTATCTATATAGATCATAAGAGCC
*
80979743 TTAAGTATCTCATTACCCAAAAGGAGTTGAATTTAAGACAATGACATTGGATTGAGTTGTTAAAG
131 TTAAGTACCTCATTACCCAAAAGGAGTTGAATTTAAGACAATGACATTGGATTGAGTTGTTAAAG
**
80979808 GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGCGAATGTAATTTTTGATGCTTTGAGTAG
196 GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGAAAATGTAATTTTTGATGCTTTGAGTAG
*
80979873 GAAGTTGATGGCA
261 GAAGTCGATGGCA
*
80979886 CAGTTGAAGATACATGGGTGAAACAACCCTACTCATGATTTGGAGTTAGCTGCTGTGGTTTTTGC
1 CAGTTGAAGATACATGGGTGAAACAACCCTACTCATGATTTGGAGTTAGCTGCTGTGGGTTTTGC
* *
80979951 ACTCAAGATTTGGCGTCATTATTTGTATGGGGAAAGGTGTGTTATCTATATGGATCATAAGAGCC
66 ACTCAAGATTTGGCGTCATTATTTGTATAGGGAAAGGTGTGTTATCTATATAGATCATAAGAGCC
*
80980016 TTAAGTACCTCATTACCCAAAAGGAGTTGAATTTAAGACAGTGACATTGGATTGAGTTGTTAAAG
131 TTAAGTACCTCATTACCCAAAAGGAGTTGAATTTAAGACAATGACATTGGATTGAGTTGTTAAAG
80980081 GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGAAAATGTAATTTTTGATGCTTTGAGTAG
196 GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGAAAATGTAATTTTTGATGCTTTGAGTAG
80980146 GAAGTCGATGGCA
261 GAAGTCGATGGCA
*
80980159 AAGTTGA
1 CAGTTGA
80980166 GAGCTCTGTT
Statistics
Matches: 269, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
273 269 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (273 bp):
CAGTTGAAGATACATGGGTGAAACAACCCTACTCATGATTTGGAGTTAGCTGCTGTGGGTTTTGC
ACTCAAGATTTGGCGTCATTATTTGTATAGGGAAAGGTGTGTTATCTATATAGATCATAAGAGCC
TTAAGTACCTCATTACCCAAAAGGAGTTGAATTTAAGACAATGACATTGGATTGAGTTGTTAAAG
GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGAAAATGTAATTTTTGATGCTTTGAGTAG
GAAGTCGATGGCA
Found at i:80983843 original size:28 final size:28
Alignment explanation
Indices: 80983811--80983880 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
80983801 AATGAGATTG
80983811 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
80983839 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
80983867 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80983881 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:80985779 original size:23 final size:24
Alignment explanation
Indices: 80985753--80985802 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
80985743 CCTATACTTG
80985753 TGATGTGTGAAATGT-TGTGAAAA
1 TGATGTGTGAAATGTATGTGAAAA
* * *
80985776 TGATTTGTGATATGTATGTTAAAA
1 TGATGTGTGAAATGTATGTGAAAA
80985800 TGA
1 TGA
80985803 GGTTAATACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.40
Consensus pattern (24 bp):
TGATGTGTGAAATGTATGTGAAAA
Found at i:80990418 original size:22 final size:20
Alignment explanation
Indices: 80990383--80990427 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
80990373 CTGCATGATG
*
80990383 TTTCTTTCTCCTTCTTTTCT
1 TTTCTTTCTCCTTCTTTTAT
80990403 TTTCTTCTCTTCCTTCTTTTAT
1 TTTCTT-TC-TCCTTCTTTTAT
80990425 TTT
1 TTT
80990428 TTATCCTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 2 0.09
22 14 0.64
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTCTTTCTCCTTCTTTTAT
Found at i:80990753 original size:21 final size:21
Alignment explanation
Indices: 80990729--80990781 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
80990719 CATTTTCAGT
*
80990729 AACTTCTTCTTCTTCAGTAAC
1 AACTTCTTCTTCTGCAGTAAC
* *
80990750 AACTTCCTCTTCTGCAGTAGC
1 AACTTCTTCTTCTGCAGTAAC
80990771 AACTTCCTTCT
1 AACTT-CTTCT
80990782 AAACAACAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.32, G:0.08, T:0.40
Consensus pattern (21 bp):
AACTTCTTCTTCTGCAGTAAC
Found at i:80990755 original size:18 final size:18
Alignment explanation
Indices: 80990723--80990761 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
80990713 CTTTCTCATT
** *
80990723 TTCAGTAACTTCTTCTTC
1 TTCAGTAACAACTTCCTC
80990741 TTCAGTAACAACTTCCTC
1 TTCAGTAACAACTTCCTC
80990759 TTC
1 TTC
80990762 TGCAGTAGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.31, G:0.05, T:0.44
Consensus pattern (18 bp):
TTCAGTAACAACTTCCTC
Found at i:81007931 original size:18 final size:19
Alignment explanation
Indices: 81007894--81007932 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
81007884 GAAAATAATC
*
81007894 AAATAATAACCAATGAAAG
1 AAATAATAACCAAGGAAAG
*
81007913 AAATAAT-ACCCAGGAAAG
1 AAATAATAACCAAGGAAAG
81007931 AA
1 AA
81007933 TCTACTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.62, C:0.13, G:0.13, T:0.13
Consensus pattern (19 bp):
AAATAATAACCAAGGAAAG
Found at i:81012182 original size:23 final size:23
Alignment explanation
Indices: 81012155--81012201 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
81012145 AAGACAAATG
81012155 ATAAGAA-AAGACAATAAAAATAA
1 ATAAGAATAAGA-AATAAAAATAA
*
81012178 ATAAGAATAATAAATAAAAATAA
1 ATAAGAATAAGAAATAAAAATAA
81012201 A
1 A
81012202 AATTTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 19 0.86
24 3 0.14
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.17
Consensus pattern (23 bp):
ATAAGAATAAGAAATAAAAATAA
Found at i:81013237 original size:17 final size:17
Alignment explanation
Indices: 81013215--81013250 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
81013205 TGTGTAGTTC
81013215 AAAAATATT-TTTTAATT
1 AAAAAT-TTATTTTAATT
81013232 AAAAATTTATTTTAATT
1 AAAAATTTATTTTAATT
81013249 AA
1 AA
81013251 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAAATTTATTTTAATT
Found at i:81018319 original size:25 final size:25
Alignment explanation
Indices: 81018291--81018371 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
81018281 AACTAAATGG
81018291 GAAAAAATTAACCAATAAGTAGGGA
1 GAAAAAATTAACCAATAAGTAGGGA
* *** * *
81018316 GAAAACATATGGTC-ATAACTAAATGG-
1 GAAAAAAT-TAACCAATAAGT--AGGGA
81018342 GAAAAAATTAACCAATAAGTAGGGA
1 GAAAAAATTAACCAATAAGTAGGGA
81018367 GAAAA
1 GAAAA
81018372 CGTATGGTCT
Statistics
Matches: 39, Mismatches: 12, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
24 3 0.08
25 19 0.49
26 14 0.36
27 3 0.08
ACGTcount: A:0.54, C:0.09, G:0.20, T:0.17
Consensus pattern (25 bp):
GAAAAAATTAACCAATAAGTAGGGA
Found at i:81018355 original size:51 final size:51
Alignment explanation
Indices: 81018279--81018380 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
81018269 TATGCTAAAG
81018279 ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACATATGGTC
1 ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACATATGGTC
*
81018330 ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACGTATGGTC
1 ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACATATGGTC
81018381 TTTCTAGTAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.50, C:0.10, G:0.21, T:0.20
Consensus pattern (51 bp):
ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACATATGGTC
Found at i:81018359 original size:26 final size:26
Alignment explanation
Indices: 81018279--81018359 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
81018269 TATGCTAAAG
81018279 ATAACTAAATGGGAAAAAATTAACCA
1 ATAACTAAATGGGAAAAAATTAACCA
* ***
81018305 ATAAGT--A-GGGAGAAAACATATGGTC-
1 ATAACTAAATGGGA-AAAA-AT-TAACCA
81018330 ATAACTAAATGGGAAAAAATTAACCA
1 ATAACTAAATGGGAAAAAATTAACCA
81018356 ATAA
1 ATAA
81018360 GTAGGGAGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
23 4 0.10
24 5 0.12
25 9 0.22
26 13 0.32
27 5 0.12
28 4 0.10
ACGTcount: A:0.54, C:0.10, G:0.16, T:0.20
Consensus pattern (26 bp):
ATAACTAAATGGGAAAAAATTAACCA
Found at i:81020059 original size:21 final size:21
Alignment explanation
Indices: 81020035--81020111 Score: 136
Period size: 21 Copynumber: 3.7 Consensus size: 21
81020025 ATTTTCTAAA
81020035 ACCACTTGACCTTAGGGTCTT
1 ACCACTTGACCTTAGGGTCTT
81020056 ACCACTTGACCTTAGGGTCTT
1 ACCACTTGACCTTAGGGTCTT
*
81020077 ATCACTTGACCTTAGGGTCTT
1 ACCACTTGACCTTAGGGTCTT
*
81020098 ACCACTTGAACTTA
1 ACCACTTGACCTTA
81020112 ATTAATCATT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (21 bp):
ACCACTTGACCTTAGGGTCTT
Found at i:81022033 original size:21 final size:21
Alignment explanation
Indices: 81021999--81022038 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81021989 AAATCTACGC
*
81021999 TTTTTGTCTGATTTTAGCTCGT
1 TTTTTGTCTCATTTT-GCTCGT
81022021 TTTTTG-CTCATTTTGCTC
1 TTTTTGTCTCATTTTGCTC
81022039 CCAAATGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 7 0.41
22 6 0.35
ACGTcount: A:0.07, C:0.17, G:0.15, T:0.60
Consensus pattern (21 bp):
TTTTTGTCTCATTTTGCTCGT
Found at i:81044387 original size:62 final size:62
Alignment explanation
Indices: 81044309--81044434 Score: 218
Period size: 62 Copynumber: 2.0 Consensus size: 62
81044299 ATAGTGAAAG
81044309 TAAAATTGGGATGCCAACTGTATGTGCTTTGTGTTAGAAGACATTAATTTGTT-AAAGATAGT
1 TAAAATTGGGATGCCAACTGTATGTGCTTTGTGTTAGAAGACATTAATTT-TTGAAAGATAGT
* *
81044371 TAAAATTGGGATGCCAACTGTGTGTGTTTTGTGTTAGAAGACATTAATTTTTGAAAGATAGT
1 TAAAATTGGGATGCCAACTGTATGTGCTTTGTGTTAGAAGACATTAATTTTTGAAAGATAGT
81044433 TA
1 TA
81044435 TATGTGCCTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
61 2 0.03
62 59 0.97
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.38
Consensus pattern (62 bp):
TAAAATTGGGATGCCAACTGTATGTGCTTTGTGTTAGAAGACATTAATTTTTGAAAGATAGT
Found at i:81045522 original size:16 final size:17
Alignment explanation
Indices: 81045501--81045535 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
81045491 TAATGTTTAG
81045501 GAAAATTA-TTAATTGA
1 GAAAATTACTTAATTGA
81045517 GAAAATTATCTTAATTGA
1 GAAAATTA-CTTAATTGA
81045535 G
1 G
81045536 GGGTTAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (17 bp):
GAAAATTACTTAATTGA
Found at i:81046700 original size:20 final size:21
Alignment explanation
Indices: 81046661--81046700 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
81046651 CGTGTTTGCT
* *
81046661 TTCCGTTTAGCTCTTATGAGC
1 TTCCGTTTAACTCATATGAGC
81046682 TTCCG-TTAACTCATATGAG
1 TTCCGTTTAACTCATATGAG
81046701 TTTCAGTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (21 bp):
TTCCGTTTAACTCATATGAGC
Found at i:81046786 original size:39 final size:39
Alignment explanation
Indices: 81046742--81046842 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
81046732 GCTCTGATGA
*
81046742 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAACACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAACACTTATGT
* *
81046781 GCTTCAGTTAGCCTTCAGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAACACTTATGT
** *
81046820 GCTTCACCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
81046843 AGATCATGAT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCATTTAACACTTATGT
Found at i:81046824 original size:21 final size:21
Alignment explanation
Indices: 81046760--81046824 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 21
81046750 TAGCCTTCGG
* *
81046760 GCTTCCGTTTAACACTTATGT
1 GCTTCCATTTAGCACTTATGT
*
81046781 GCTT-CAGTTAGC-CTTCA-G-
1 GCTTCCATTTAGCACTT-ATGT
81046799 GCTTCCATTTAGCACTTATGT
1 GCTTCCATTTAGCACTTATGT
81046820 GCTTC
1 GCTTC
81046825 ACCTAGACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
18 4 0.11
19 12 0.34
20 10 0.29
21 9 0.26
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (21 bp):
GCTTCCATTTAGCACTTATGT
Found at i:81048218 original size:20 final size:21
Alignment explanation
Indices: 81048179--81048218 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
81048169 TTTGGCATGA
*
81048179 TTTTCAACTATTTTAGGGTCAT
1 TTTTCAACTA-TTAAGGGTCAT
81048201 TTTTCAACTA-TAAGGGTC
1 TTTTCAACTATTAAGGGTC
81048219 CAAGGTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.45
Consensus pattern (21 bp):
TTTTCAACTATTAAGGGTCAT
Found at i:81051594 original size:32 final size:33
Alignment explanation
Indices: 81051505--81051617 Score: 158
Period size: 33 Copynumber: 3.5 Consensus size: 33
81051495 CACCTAAAAG
* *
81051505 GTACAACTAGAAAAGGAAATGTACACTGTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* *
81051538 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
*
81051571 GTAC-ACTTGAAAAGGAAATGTACACCTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
81051603 GTACAA-TGTGAAAAG
1 GTACAACT-TGAAAAG
81051618 TGGTAGCTTC
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
32 30 0.42
33 41 0.58
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (33 bp):
GTACAACTTGAAAAGGAAATGTACACTTTGTGT
Found at i:81051684 original size:33 final size:30
Alignment explanation
Indices: 81051605--81051690 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 30
81051595 CCTTGTGTGT
*
81051605 ACAATGTGAAAAGTGGTAGCTTCGGCTACTTG
1 ACAA-GTG-AAAGTGGTAGCTTCGGCTACGTG
81051637 ATC-AGTGAATAGTGGTAGCTTCGGCTACAAGTG
1 A-CAAGTGAA-AGTGGTAGCTTCGGCTAC--GTG
81051670 ACAAGTGATAAGTGGTAGCTT
1 ACAAGTGA-AAGTGGTAGCTT
81051691 TAGCTACACT
Statistics
Matches: 47, Mismatches: 1, Indels: 11
0.80 0.02 0.19
Matches are distributed among these distances:
30 2 0.04
31 21 0.45
32 3 0.06
33 20 0.43
34 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (30 bp):
ACAAGTGAAAGTGGTAGCTTCGGCTACGTG
Found at i:81051784 original size:27 final size:27
Alignment explanation
Indices: 81051753--81051805 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
81051743 ATAATTGAAC
* *
81051753 TATGGCAAAGTGATAAAGTGTTCCAAT
1 TATGGAAAAGTGATAAAGTGTGCCAAT
*
81051780 TATGGAAAAGTGATATAGTGTGCCAA
1 TATGGAAAAGTGATAAAGTGTGCCAA
81051806 ACATAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (27 bp):
TATGGAAAAGTGATAAAGTGTGCCAAT
Found at i:81051816 original size:27 final size:27
Alignment explanation
Indices: 81051759--81051818 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
81051749 GAACTATGGC
* ** *
81051759 AAAGTGATAAAGTGTTCCAATTATGGA
1 AAAGTGATAAAGTGTGCCAAACATAGA
* *
81051786 AAAGTGATATAGTGTGCCAAACATAGT
1 AAAGTGATAAAGTGTGCCAAACATAGA
81051813 AAAGTG
1 AAAGTG
81051819 TTCAGTGATC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (27 bp):
AAAGTGATAAAGTGTGCCAAACATAGA
Found at i:81051899 original size:34 final size:34
Alignment explanation
Indices: 81051868--81051935 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
81051858 TAATCCATGG
* *
81051868 CAAAGTGTGAAATGTAGTTATGGTATTTCCATAC
1 CAAACTGTGAAATGTAGGTATGGTATTTCCATAC
* * *
81051902 CGATCTGTGAAATGTAGGTATGGTGTTTCCATAC
1 CAAACTGTGAAATGTAGGTATGGTATTTCCATAC
81051936 TGAGTTGTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (34 bp):
CAAACTGTGAAATGTAGGTATGGTATTTCCATAC
Found at i:81056184 original size:17 final size:18
Alignment explanation
Indices: 81056156--81056192 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
81056146 AAAATTTATT
*
81056156 TTATAATAAAATGATATC
1 TTATAATAAAATAATATC
81056174 TTATAAT-AAATAATATC
1 TTATAATAAAATAATATC
81056191 TT
1 TT
81056193 TTTTAGACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (18 bp):
TTATAATAAAATAATATC
Found at i:81057038 original size:22 final size:20
Alignment explanation
Indices: 81057012--81057052 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
81057002 AATAATTGTT
81057012 TTATAATAATACATTATATTAA
1 TTATAATAATA-ATT-TATTAA
*
81057034 TTATATTAATAATTTATTA
1 TTATAATAATAATTTATTA
81057053 TAAGATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 10 0.56
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TTATAATAATAATTTATTAA
Found at i:81057125 original size:9 final size:9
Alignment explanation
Indices: 81057111--81057136 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
81057101 ATTTGAGATT
81057111 AATATTTTA
1 AATATTTTA
81057120 AATATTTTA
1 AATATTTTA
81057129 AATATTTT
1 AATATTTT
81057137 CAAAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
AATATTTTA
Found at i:81057306 original size:43 final size:42
Alignment explanation
Indices: 81057236--81057319 Score: 125
Period size: 41 Copynumber: 2.0 Consensus size: 42
81057226 AAAATAATTT
* *
81057236 AAAAAACTATTTTTTTAAATAACTT-AAAGTTTTTAAAAGGA
1 AAAAAACAATTTTTTTAAAAAACTTAAAAGTTTTTAAAAGGA
81057277 AAAAAACAATTTTTTTAAAAAATACTTAAAAGTTTTTAAAAGG
1 AAAAAACAATTTTTTT-AAAAA-ACTTAAAAGTTTTTAAAAGG
81057320 GAAAGTGATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 15 0.39
42 4 0.11
43 4 0.11
44 15 0.39
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (42 bp):
AAAAAACAATTTTTTTAAAAAACTTAAAAGTTTTTAAAAGGA
Found at i:81057969 original size:22 final size:23
Alignment explanation
Indices: 81057924--81057970 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
81057914 TTAACAAATT
* **
81057924 TATAAATTTCTAAAATATGTAAA
1 TATAAATTTCTAAAAAATCAAAA
81057947 TATAAATTT-TAAAAAATCAAAA
1 TATAAATTTCTAAAAAATCAAAA
81057969 TA
1 TA
81057971 AATATAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (23 bp):
TATAAATTTCTAAAAAATCAAAA
Found at i:81058010 original size:29 final size:28
Alignment explanation
Indices: 81057946--81058047 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 28
81057936 AAATATGTAA
*
81057946 ATATAAATTTTAAAAAATCAAAATAAAT
1 ATATAAATTTTAAAAAATCAAAAAAAAT
*
81057974 ATAAAAATTTATAAAAAAT-AAAAAAAAGT
1 ATATAAATTT-TAAAAAATCAAAAAAAA-T
*
81058003 ATTTAAATTTTAAAAAATTGCAAAAAAAA-
1 ATATAAATTTTAAAAAA-T-CAAAAAAAAT
81058032 ACT-TAAATTTTAAAAA
1 A-TATAAATTTTAAAAA
81058048 TATATTCTAG
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
28 23 0.36
29 32 0.50
30 1 0.02
31 8 0.12
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (28 bp):
ATATAAATTTTAAAAAATCAAAAAAAAT
Found at i:81058284 original size:8 final size:8
Alignment explanation
Indices: 81058242--81058291 Score: 59
Period size: 8 Copynumber: 6.4 Consensus size: 8
81058232 ATCTTTTGAT
81058242 ATTT-TAA
1 ATTTATAA
81058249 ATTT-TAA
1 ATTTATAA
*
81058256 ATTTATAT
1 ATTTATAA
*
81058264 ATGTTAGAA
1 AT-TTATAA
81058273 ATTTATAA
1 ATTTATAA
81058281 ATTTATAA
1 ATTTATAA
81058289 ATT
1 ATT
81058292 ATTTTTATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
7 11 0.30
8 20 0.54
9 6 0.16
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (8 bp):
ATTTATAA
Found at i:81063138 original size:18 final size:20
Alignment explanation
Indices: 81063100--81063138 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
81063090 TGTGGAAGAG
*
81063100 AAGATATAAATATTTTGATC
1 AAGATATAAATATTTTCATC
81063120 AAGAT-TAAA-ATTTTCATC
1 AAGATATAAATATTTTCATC
81063138 A
1 A
81063139 CAGACAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 4 0.22
20 5 0.28
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (20 bp):
AAGATATAAATATTTTCATC
Found at i:81069301 original size:34 final size:34
Alignment explanation
Indices: 81069258--81069327 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
81069248 TAGCATACAG
81069258 CAAAATACATTTAAATTATTCCAATATCCAAATC
1 CAAAATACATTTAAATTATTCCAATATCCAAATC
81069292 CAAAATACATTTAAATTATTCCAATATCCAAATC
1 CAAAATACATTTAAATTATTCCAATATCCAAATC
81069326 CA
1 CA
81069328 TGATTAAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.31
Consensus pattern (34 bp):
CAAAATACATTTAAATTATTCCAATATCCAAATC
Found at i:81073115 original size:27 final size:27
Alignment explanation
Indices: 81073085--81073138 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
81073075 AAGCAGTGAA
81073085 GATTTCTTGTTAATGTCAGCAAGCGAT
1 GATTTCTTGTTAATGTCAGCAAGCGAT
*
81073112 GATTTCTTGTTAGTGTCAGCAAGCGAT
1 GATTTCTTGTTAATGTCAGCAAGCGAT
81073139 TGTTCCGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
GATTTCTTGTTAATGTCAGCAAGCGAT
Found at i:81074103 original size:17 final size:17
Alignment explanation
Indices: 81074081--81074122 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
81074071 TTTATCTCCA
*
81074081 TCTTTTGTACTATTCGT
1 TCTTTTGCACTATTCGT
*
81074098 TCTTTTGCACTCTTCGT
1 TCTTTTGCACTATTCGT
81074115 TCTTTTGC
1 TCTTTTGC
81074123 CATTATAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.07, C:0.24, G:0.12, T:0.57
Consensus pattern (17 bp):
TCTTTTGCACTATTCGT
Found at i:81077593 original size:49 final size:49
Alignment explanation
Indices: 81077537--81077808 Score: 430
Period size: 49 Copynumber: 5.7 Consensus size: 49
81077527 AGTATATTTG
*
81077537 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
81077586 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
81077635 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
81077684 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* * * * * *
81077731 GATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
81077778 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGTGTATATATATGTGATAAG
81077809 TCCCGAAGGG
Statistics
Matches: 211, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
47 95 0.45
48 1 0.00
49 115 0.55
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:81078028 original size:37 final size:37
Alignment explanation
Indices: 81077927--81078028 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
81077917 CCGAGCTCTA
* *
81077927 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
81077964 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
* *
81078001 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
81078029 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
Found at i:81079513 original size:21 final size:21
Alignment explanation
Indices: 81079462--81079514 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
81079452 TCGTTTTTAC
* *
81079462 TTTCAGTTTAGCTCTCATGAG
1 TTTCAGTTTAACTCTCATAAG
*
81079483 CTTCA-TTTAACTCAT-ATAAG
1 TTTCAGTTTAACTC-TCATAAG
81079503 TTTCAGTTTAAC
1 TTTCAGTTTAAC
81079515 CCTATTGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.43
Consensus pattern (21 bp):
TTTCAGTTTAACTCTCATAAG
Found at i:81079569 original size:42 final size:42
Alignment explanation
Indices: 81079504--81079590 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
81079494 TCATATAAGT
* * **
81079504 TTCAGTTTAACCCTATTGGGTTTCTGTTTAGCTCTTTTGAGC
1 TTCAATTTAACCCTATTGGGTTTCTGTTCAGCTCTTACGAGC
*
81079546 TTCAATTTAACCCT-TATGTGTTTCTGTTCAGCTCTTACGAGC
1 TTCAATTTAACCCTAT-TGGGTTTCTGTTCAGCTCTTACGAGC
81079588 TTC
1 TTC
81079591 TGTTCAACCC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.03
42 38 0.97
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.46
Consensus pattern (42 bp):
TTCAATTTAACCCTATTGGGTTTCTGTTCAGCTCTTACGAGC
Found at i:81079600 original size:42 final size:42
Alignment explanation
Indices: 81079523--81079603 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
81079513 ACCCTATTGG
* ** *
81079523 GTTTCTGTTTAGCTCTTTTGAGCTTCAATTTAACCCTTATGT
1 GTTTCTGTTCAGCTCTTACGAGCTTCAATTCAACCCTTATGT
**
81079565 GTTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACCCTTA
1 GTTTCTGTTCAGCTCTTACGAGCTTCAATTCAACCCTTA
81079604 CAGGCTTCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.16, C:0.23, G:0.15, T:0.46
Consensus pattern (42 bp):
GTTTCTGTTCAGCTCTTACGAGCTTCAATTCAACCCTTATGT
Found at i:81079636 original size:21 final size:21
Alignment explanation
Indices: 81079567--81079628 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
81079557 CCTTATGTGT
* * *
81079567 TTCTGTTCAGCTCTTACGAGC
1 TTCTGTTCAACCCTTACGGGC
*
81079588 TTCTGTTCAACCCTTACAGGC
1 TTCTGTTCAACCCTTACGGGC
81079609 TTCTGTTCAACCCTTACGGG
1 TTCTGTTCAACCCTTACGGG
81079629 TTTTTGTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.35
Consensus pattern (21 bp):
TTCTGTTCAACCCTTACGGGC
Found at i:81082066 original size:31 final size:30
Alignment explanation
Indices: 81082031--81082090 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
81082021 TCTTGATTGA
*
81082031 TTTATTGATTTATTACGTTTGTTTATTTTTC
1 TTTATTGATTTATTACG-TTATTTATTTTTC
* * *
81082062 TTTATTTATTTTTTTCGTTATTTATTTTT
1 TTTATTGATTTATTACGTTATTTATTTTT
81082091 ATCTCTTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.15, C:0.05, G:0.07, T:0.73
Consensus pattern (30 bp):
TTTATTGATTTATTACGTTATTTATTTTTC
Found at i:81082077 original size:16 final size:16
Alignment explanation
Indices: 81082056--81082090 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
81082046 CGTTTGTTTA
*
81082056 TTTTTCTTTATTTATT
1 TTTTTCGTTATTTATT
81082072 TTTTTCGTTATTTATT
1 TTTTTCGTTATTTATT
81082088 TTT
1 TTT
81082091 ATCTCTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.06, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTTCGTTATTTATT
Found at i:81083033 original size:16 final size:17
Alignment explanation
Indices: 81083008--81083047 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
81082998 CACCTACCAT
*
81083008 TTATTATTATTTT-TAA
1 TTATTTTTATTTTATAA
81083024 TTATTTTTATTTTAGTAA
1 TTATTTTTATTTTA-TAA
81083042 TTATTT
1 TTATTT
81083048 GATAATGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 12 0.57
18 9 0.43
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTATTTTTATTTTATAA
Found at i:81095081 original size:39 final size:40
Alignment explanation
Indices: 81095036--81095207 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
81095026 GCTCCTCGTT
* * *
81095036 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
81095076 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
81095115 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
81095155 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
81095195 CAAATGCCTTCGG
1 CAAATGCCTTCGG
81095208 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:81095136 original size:40 final size:39
Alignment explanation
Indices: 81095038--81095260 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
81095028 TCCTCGTTCA
* * * *
81095038 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
81095077 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
81095116 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
81095156 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
81095196 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
81095237 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81095261 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:81095220 original size:80 final size:79
Alignment explanation
Indices: 81095036--81095260 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
81095026 GCTCCTCGTT
* * * * *
81095036 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
81095100 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
81095115 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
81095180 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
81095195 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
81095259 GA
63 GA
81095261 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:81095269 original size:41 final size:41
Alignment explanation
Indices: 81095192--81095269 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81095182 TTTGTATCTC
* * *
81095192 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
81095233 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
81095270 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:81101783 original size:24 final size:22
Alignment explanation
Indices: 81101746--81101798 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 22
81101736 AAAATGATAA
*
81101746 ATTTTGTCAATTTAATTATTATTT
1 ATTTTTTCAATTTAATTA--ATTT
*
81101770 ATTTTTTCACTTTAATTAATTT
1 ATTTTTTCAATTTAATTAATTT
81101792 ATTTTTT
1 ATTTTTT
81101799 AGTTAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 11 0.41
24 16 0.59
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (22 bp):
ATTTTTTCAATTTAATTAATTT
Found at i:81101807 original size:21 final size:22
Alignment explanation
Indices: 81101766--81101807 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
81101756 TTTAATTATT
*
81101766 ATTTATTTTTTCACTTTAATTA
1 ATTTATTTTTTCACTTAAATTA
*
81101788 ATTTATTTTTT-AGTTAAATT
1 ATTTATTTTTTCACTTAAATT
81101808 TGATTATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (22 bp):
ATTTATTTTTTCACTTAAATTA
Found at i:81102568 original size:13 final size:13
Alignment explanation
Indices: 81102552--81102577 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81102542 CAATGGATGA
81102552 TTACAAATGAGTG
1 TTACAAATGAGTG
81102565 TTACAAATGAGTG
1 TTACAAATGAGTG
81102578 GGAGACTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
TTACAAATGAGTG
Found at i:81103015 original size:8 final size:8
Alignment explanation
Indices: 81102993--81103044 Score: 56
Period size: 8 Copynumber: 6.5 Consensus size: 8
81102983 GTCAACAAAT
81102993 AAAT-TAA
1 AAATATAA
81103000 AAATTATAA
1 AAA-TATAA
81103009 AAATATACA
1 AAATATA-A
81103018 AAA-ATATA
1 AAATATA-A
81103026 AAATAT-A
1 AAATATAA
81103033 AAATATAA
1 AAATATAA
81103041 AAAT
1 AAAT
81103045 TTCATAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
7 10 0.26
8 17 0.44
9 12 0.31
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (8 bp):
AAATATAA
Found at i:81103027 original size:32 final size:32
Alignment explanation
Indices: 81102991--81103057 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 32
81102981 GCGTCAACAA
*
81102991 ATAAATTA-AAAATTATAAAAATATACA-AAAAT
1 ATAAAATATAAAA-TATAAAAAT-TACATAAAAT
*
81103023 ATAAAATATAAAATATAAAAATTTCATAAAAT
1 ATAAAATATAAAATATAAAAATTACATAAAAT
81103055 ATA
1 ATA
81103058 TATACATAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 3 0.10
32 24 0.77
33 4 0.13
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (32 bp):
ATAAAATATAAAATATAAAAATTACATAAAAT
Found at i:81111570 original size:101 final size:101
Alignment explanation
Indices: 81111391--81111603 Score: 282
Period size: 101 Copynumber: 2.1 Consensus size: 101
81111381 TATTCAAACG
* * **
81111391 TAAGACCATGGTTGGACCATGACAGTGTATATATGTAAGACCATAGCTAGGTTATGGGATTCTGA
1 TAAGACCATGGTTGGACCATGACAGTGTATATATCTAAGACCATAGCTAGGCTATGACATTCTGA
* * *
81111456 TGATAAGATCATAACTGGGTTATGGCACTATGGACA
66 TGATAAGACCATAACTGGGTTAGGGCACTATGAACA
* * * * * * *
81111492 TAAGACCATGGTTGGACTATGGCATTGTTTATATCTAAGACCATAGTTGGGCTATGACATTCTGG
1 TAAGACCATGGTTGGACCATGACAGTGTATATATCTAAGACCATAGCTAGGCTATGACATTCTGA
*
81111557 TGATAAGACCATAACTGGGTTAGGGCACTATGAACG
66 TGATAAGACCATAACTGGGTTAGGGCACTATGAACA
*
81111593 TAAGACTATGG
1 TAAGACCATGG
81111604 CAAGGCCATG
Statistics
Matches: 96, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 96 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGACAGTGTATATATCTAAGACCATAGCTAGGCTATGACATTCTGA
TGATAAGACCATAACTGGGTTAGGGCACTATGAACA
Found at i:81114408 original size:16 final size:16
Alignment explanation
Indices: 81114389--81114459 Score: 106
Period size: 16 Copynumber: 4.4 Consensus size: 16
81114379 GTTTGGTTCA
*
81114389 CTGTAATTGAATAGGG
1 CTGTAATTGAATAGAG
81114405 CTGTAATTGAATAGAG
1 CTGTAATTGAATAGAG
* *
81114421 CTGTGATGGAATAGAG
1 CTGTAATTGAATAGAG
*
81114437 CTGTAATAGAATAGAG
1 CTGTAATTGAATAGAG
81114453 CTGTAAT
1 CTGTAAT
81114460 AAGTAATTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (16 bp):
CTGTAATTGAATAGAG
Found at i:81114657 original size:26 final size:25
Alignment explanation
Indices: 81114627--81114714 Score: 77
Period size: 26 Copynumber: 3.4 Consensus size: 25
81114617 CTGTTATTAA
81114627 ATTTTAATAAAATTATTGTTAAATAT
1 ATTTTAATAAAATTATT-TTAAATAT
* * * **
81114653 ATTTTATTAAAAAATAATTTAACCAT
1 ATTTTAAT-AAAATTATTTTAAATAT
* *
81114679 ATTTTAACATAATTATTATTAAATAT
1 ATTTTAATAAAATTATT-TTAAATAT
*
81114705 AATTTAATAA
1 ATTTTAATAA
81114715 CATTCTTAAT
Statistics
Matches: 45, Mismatches: 15, Indels: 4
0.70 0.23 0.06
Matches are distributed among these distances:
25 6 0.13
26 32 0.71
27 7 0.16
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (25 bp):
ATTTTAATAAAATTATTTTAAATAT
Done.