Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 247 of 316
Found at i:81539127 original size:210 final size:209
Alignment explanation
Indices: 81538744--81539713 Score: 915
Period size: 210 Copynumber: 4.8 Consensus size: 209
81538734 TGTGATGACA
* ** * *
81538744 AGCCAGAAGCCTTAGAATCACTAGAACCTGACAAAGAACCAGAACTTGTAGAGGAACCAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* * *
81538809 TCATG-TTCTAAAGAAGACTTAGAAGCCGTAGTAGGA-CTAGAATCCTTAGAATTGTTCA-AACC
66 TCATGATT-TAATGAAGACTGAGAAGCCGTAGTAGAATC-AGAATCCTTAGAATTGTT-AGAACC
* * * *
81538871 -AGAATTTGTGGATAAGTTAGCAGTAGTAGAACCAGAATGCTTAAAAGAACCAGAATGTGAAGAT
128 TA-AGTTTGTGGATGAGTTAGCAGCA-TAGAACCAGAATGATTAAAAGAACCAGAATGTGAAGAT
81538935 GAACTAGAATTTGAGGATG
191 GAACTAGAATTTGAGGATG
* * *
81538954 AGCCCGAAGCCTTATAATTTCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAATTAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* * * *
81539019 TTAT-AGTTTAATGAAGACTGAGAAGCCGTAGTAGAATTAGAACCCTTAGAACTGTTAGAACCTA
66 TCATGA-TTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTA
* * *
81539083 AGTTTGTGGAGGAGTTACCAGCAATAGGACCA-AAGTGATTAAAAGAACCAGAATGTGAAGATGA
130 AGTTTGTGGATGAGTTAGCAGC-ATAGAACCAGAA-TGATTAAAAGAACCAGAATGTGAAGATGA
*
81539147 AATAGAATTTGAGGATG
193 ACTAGAATTTGAGGATG
* * * *
81539164 ACCCGGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGAAGAGGAATTAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* * ** * * * * *
81539229 CCATGATTTAATGTAGACTGAGAAGCCACAGTAGGAGCAGAATCATTAGAATTGTTGGAACCTAT
66 TCATGATTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAA
* * * *
81539294 GTTTGTGGAAGAGTTAGAAGCACCAGAACCAGAATGCTTAAAAGAA-C----TG-G-AG-T---C
131 GTTTGTGGATGAGTTAGCAGCA-TAGAACCAGAATGATTAAAAGAACCAGAATGTGAAGATGAAC
81539348 T-G-A----A-GATG
195 TAGAATTTGAGGATG
* * * ** * * *
81539356 AGCCAAAAGCCTTAGAACTATTAGAACCTGATAAAGAATCAGAACTTATGGAGGAACTAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* * * * * *
81539421 CCATGATTTAATGAAGACTGAGAAGCTGTTGTAGAATAAGAATCCTTAGAATGGTTAGAACCTGA
66 TCATGATTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAA
*
81539486 GTTTTTGGATGAGTTAGCAGC-----A-C--------T---AGAACCAGAATGTGAAGATGAACT
131 GTTTGTGGATGAGTTAGCAGCATAGAACCAGAATGATTAAAAGAACCAGAATGTGAAGATGAACT
* ** *
81539534 GGAATTTTTGGATA
196 AGAATTTGAGGATG
* * * * *
81539548 AGCCTGAAGCCTTATAATTGCTAGTACCTGATAGAGAACTAGAACTTGCAGAGGAACTAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* ** * * *
81539613 TTATGATTTAATGAAGACTGAGAAGTTGTAGTAGAATCAGTATCCTTAGAATTGTCAGAACCCAA
66 TCATGATTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAA
* *
81539678 GTTTGTGGATGAGTTAGTAGCACTAGAACCGGAATG
131 GTTTGTGGATGAGTTAGCAGCA-TAGAACCAGAATG
81539714 TGGAGATAAA
Statistics
Matches: 618, Mismatches: 101, Indels: 87
0.77 0.13 0.11
Matches are distributed among these distances:
174 4 0.01
175 1 0.00
177 1 0.00
179 2 0.00
180 1 0.00
181 2 0.00
182 1 0.00
185 3 0.00
186 2 0.00
187 1 0.00
192 256 0.41
193 1 0.00
197 1 0.00
198 2 0.00
199 2 0.00
202 1 0.00
203 2 0.00
204 1 0.00
205 2 0.00
209 5 0.01
210 320 0.52
211 7 0.01
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (209 bp):
AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
TCATGATTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAA
GTTTGTGGATGAGTTAGCAGCATAGAACCAGAATGATTAAAAGAACCAGAATGTGAAGATGAACT
AGAATTTGAGGATG
Found at i:81539472 original size:192 final size:189
Alignment explanation
Indices: 81539126--81539715 Score: 597
Period size: 192 Copynumber: 3.1 Consensus size: 189
81539116 AGTGATTAAA
* * * * * * * ** * * *
81539126 AGAACCAGAATGTGAAGATGAAATAGAATTTGAGGATGACCCGGAAGCCTTATAATTGCTAGAAC
1 AGAACCAGAATGTGAAGAAGAACTGGAATCTGAAGATAAGCCAAAAGCCTTAGAACTACTAGAAC
* * *
81539191 CTGATAAAGAACCAGAACTTGAAGAGGAATTAGAAGCCCCATGATTTAATGTAGACTGAGAAGCC
66 CTGATAAAGAA-CAGAACTT-AAGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGCT
** * * * * * *
81539256 ACAGTAGGAGCAGAATCATTAGAATTGTTGGAACCTATGTTTGTGGAAGAGTTAGAAGCACC
129 GTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTA-GTTTGTGGATGAGTTAGAAGCACT
* * * *
81539318 AGAACCAGAATGCTTAA-AAGAACTGGAGTCTGAAGATGAGCCAAAAGCCTTAGAACTATTAGAA
1 AGAACCAGAATG-TGAAGAAGAACTGGAATCTGAAGATAAGCCAAAAGCCTTAGAACTACTAGAA
*
81539382 CCTGATAAAGAATCAGAACTTATGGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGC
65 CCTGATAAAGAA-CAGAACTTA-AGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGC
* * * * *
81539447 TGTTGTAGAATAAGAATCCTTAGAATGGTTAGAACCTGAGTTTTTGGATGAGTTAGCAGCACT
128 TGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCT-AGTTTGTGGATGAGTTAGAAGCACT
* * *** ** * * * *
81539510 AGAACCAGAATGTGAAGATGAACTGGAATTTTTGGATAAGCCTGAAGCCTTATAATTGCTAGTAC
1 AGAACCAGAATGTGAAGAAGAACTGGAATCTGAAGATAAGCCAAAAGCCTTAGAACTACTAGAAC
* * ** *
81539575 CTGATAGAGAACTAGAACTTGCAGAGGAACTAGAAGCCTTATGATTTAATGAAGACTGAGAAGTT
66 CTGATAAAGAAC-AGAACTT-AAGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGCT
* * * *
81539640 GTAGTAGAATCAGTATCCTTAGAATTGTCAGAACCCAAGTTTGTGGATGAGTTAGTAGCACT
129 GTAGTAGAATCAGAATCCTTAGAATTGTTAGAA-CCTAGTTTGTGGATGAGTTAGAAGCACT
*
81539702 AGAACCGGAATGTG
1 AGAACCAGAATGTG
81539716 GAGATAAACT
Statistics
Matches: 329, Mismatches: 62, Indels: 14
0.81 0.15 0.03
Matches are distributed among these distances:
191 5 0.02
192 318 0.97
193 6 0.02
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (189 bp):
AGAACCAGAATGTGAAGAAGAACTGGAATCTGAAGATAAGCCAAAAGCCTTAGAACTACTAGAAC
CTGATAAAGAACAGAACTTAAGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGCTGT
AGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAGTTTGTGGATGAGTTAGAAGCACT
Found at i:81540013 original size:18 final size:18
Alignment explanation
Indices: 81539958--81540013 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
81539948 ATGCTTAAAA
* *
81539958 GAACTTGAATGTGAAGAA
1 GAACTAGAATGTGAAGAT
*
81539976 GAACTAGAATGTGAATAT
1 GAACTAGAATGTGAAGAT
* *
81539994 GAACTGGAATATGAAGAT
1 GAACTAGAATGTGAAGAT
81540012 GA
1 GA
81540014 GCCTGAAGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.45, C:0.05, G:0.27, T:0.23
Consensus pattern (18 bp):
GAACTAGAATGTGAAGAT
Found at i:81540469 original size:18 final size:18
Alignment explanation
Indices: 81540432--81540476 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
81540422 ACCCTTCCAA
*
81540432 GAACCAGAATGTGAAGAT
1 GAACTAGAATGTGAAGAT
81540450 GAACTAGAATGTGACA-AT
1 GAACTAGAATGTGA-AGAT
*
81540468 GAGCTAGAA
1 GAACTAGAA
81540477 GATTTGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.44, C:0.11, G:0.27, T:0.18
Consensus pattern (18 bp):
GAACTAGAATGTGAAGAT
Found at i:81540580 original size:165 final size:165
Alignment explanation
Indices: 81540379--81540737 Score: 601
Period size: 165 Copynumber: 2.2 Consensus size: 165
81540369 GTCATAGCAG
** *
81540379 AACTAGAATCCTTAGGCTTGTTAGAATCTTCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
1 AACTAGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
* *
81540444 GAAGATGAACTAGAATGTGACAATGAGCTAGAAGATTTGGAATGGCTAGAACCTGATAAAGAACT
66 GAAGATGAACTAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACT
*
81540509 AGAAGTTGCAGAGGATCTAGAATCCCCATGACCTA
131 AGAAGTTGCAGAGGAACTAGAATCCCCATGACCTA
81540544 AACTAGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
1 AACTAGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
*
81540609 GAAGATGAACTAGAATGTGACAATGAGTTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACT
66 GAAGATGAACTAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACT
*
81540674 AGAAGTTGTAGAGGAACTAGAATCCCCATGACCTA
131 AGAAGTTGCAGAGGAACTAGAATCCCCATGACCTA
** * * *
81540709 AACCGGAGTCTTTAGAATTATTAGAATCT
1 AACTAGAATCCTTAGAATTGTTAGAATCT
81540738 ATGGGAGAGC
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
165 181 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (165 bp):
AACTAGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
GAAGATGAACTAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACT
AGAAGTTGCAGAGGAACTAGAATCCCCATGACCTA
Found at i:81540791 original size:165 final size:165
Alignment explanation
Indices: 81540383--81540806 Score: 496
Period size: 165 Copynumber: 2.6 Consensus size: 165
81540373 TAGCAGAACT
** * * * * *
81540383 AGAATCCTTAGGCTTGTTAGAATCTTCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGTGAAG
1 AGAATCCTTAGAATTATTAGAATCTCCGAATGAGCTAGAAACCTTCAAAGAACCAGAATCTGAAG
* * * *
81540448 ATGAACTAGAATGTGACAATGAGCTAGAAGATTTGGAATGGCTAGAACCTGATAAAGAACTAGAA
66 AAGAACCAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACTAGAA
* *
81540513 GTTGCAGAGGATCTAGAATCCCCATGACCTAAACT
131 GTTGCAGAGGAACTAGAATCCCCATGACCTAAACC
* * * *
81540548 AGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGTGAAG
1 AGAATCCTTAGAATTATTAGAATCTCCGAATGAGCTAGAAACCTTCAAAGAACCAGAATCTGAAG
* * *
81540613 ATGAACTAGAATGTGACAATGAGTTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACTAGAA
66 AAGAACCAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACTAGAA
*
81540678 GTTGTAGAGGAACTAGAATCCCCATGACCTAAACC
131 GTTGCAGAGGAACTAGAATCCCCATGACCTAAACC
* * * ** * * * *
81540713 GGAGTCTTTAGAATTATTAGAATCTATGGGA-GAGCTA-AAACCTTTAAATGAACCTGAACTCTT
1 AGAATCCTTAGAATTATTAGAATCT-CCGAATGAGCTAGAAACCTTCAAA-GAACCAGAA-TCTG
* *
81540776 AA-AAGATCCAGAATGTGA-AGATGAACTAGAA
63 AAGAAGAACCAGAATGTGACA-ATGAGCTAGAA
81540807 TGTGAAGATG
Statistics
Matches: 228, Mismatches: 27, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
164 9 0.04
165 213 0.93
166 6 0.03
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (165 bp):
AGAATCCTTAGAATTATTAGAATCTCCGAATGAGCTAGAAACCTTCAAAGAACCAGAATCTGAAG
AAGAACCAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACTAGAA
GTTGCAGAGGAACTAGAATCCCCATGACCTAAACC
Found at i:81540830 original size:18 final size:18
Alignment explanation
Indices: 81540783--81540824 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
81540773 CTTAAAAGAT
81540783 CCAGAATGTGAAGATGAA
1 CCAGAATGTGAAGATGAA
* *
81540801 CTAGAATGTGAAGATGAG
1 CCAGAATGTGAAGATGAA
81540819 CCAGAA
1 CCAGAA
81540825 GCTGAACTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.43, C:0.12, G:0.29, T:0.17
Consensus pattern (18 bp):
CCAGAATGTGAAGATGAA
Found at i:81544412 original size:9 final size:10
Alignment explanation
Indices: 81544398--81544446 Score: 70
Period size: 9 Copynumber: 5.3 Consensus size: 10
81544388 ATAAAAATCT
81544398 AAATATTA-A
1 AAATATTATA
81544407 AAATATTA-A
1 AAATATTATA
81544416 AAAT-TTATA
1 AAATATTATA
81544425 AAATATTATA
1 AAATATTATA
81544435 AAA-ATTATA
1 AAATATTATA
81544444 AAA
1 AAA
81544447 ATCACAAACG
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
8 3 0.08
9 27 0.71
10 8 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAATATTATA
Found at i:81544437 original size:19 final size:18
Alignment explanation
Indices: 81544384--81544446 Score: 69
Period size: 17 Copynumber: 3.6 Consensus size: 18
81544374 TTAGAAATAG
81544384 AATTATAAAA-ATCT-AAA
1 AATTATAAAATAT-TAAAA
*
81544401 TATTA-AAAATATTAAAA
1 AATTATAAAATATTAAAA
*
81544418 ATTTATAAAATATTATAAA
1 AATTATAAAATATTA-AAA
81544437 AATTATAAAA
1 AATTATAAAA
81544447 ATCACAAACG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
16 5 0.13
17 12 0.32
18 9 0.24
19 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
AATTATAAAATATTAAAA
Found at i:81544447 original size:9 final size:9
Alignment explanation
Indices: 81544384--81544448 Score: 64
Period size: 9 Copynumber: 7.3 Consensus size: 9
81544374 TTAGAAATAG
81544384 AATTATAAA
1 AATTATAAA
*
81544393 AA-TCTAAA
1 AATTATAAA
*
81544401 TATTA-AAA
1 AATTATAAA
81544409 ATATTA-AAA
1 A-ATTATAAA
*
81544418 ATTTATAAA
1 AATTATAAA
81544427 ATATTATAAA
1 A-ATTATAAA
81544437 AATTATAAA
1 AATTATAAA
81544446 AAT
1 AAT
81544449 CACAAACGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
8 12 0.26
9 26 0.57
10 8 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (9 bp):
AATTATAAA
Found at i:81544802 original size:11 final size:10
Alignment explanation
Indices: 81544771--81544813 Score: 56
Period size: 9 Copynumber: 4.5 Consensus size: 10
81544761 TCATAAATAT
81544771 TAAAATATTA
1 TAAAATATTA
81544781 -AAAAT-TTA
1 TAAAATATTA
81544789 TAAAAGTATTA
1 TAAAA-TATTA
81544800 TAAAA-ATTA
1 TAAAATATTA
81544809 TAAAA
1 TAAAA
81544814 AATATTTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 3 0.10
9 18 0.60
10 1 0.03
11 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (10 bp):
TAAAATATTA
Found at i:81544803 original size:36 final size:36
Alignment explanation
Indices: 81544736--81544808 Score: 85
Period size: 36 Copynumber: 2.0 Consensus size: 36
81544726 TTTTCTAAGA
* * *
81544736 AAAATAATTAAAATTTTTTAAAAAATCATAAATATT
1 AAAATAATTAAAAATTTATAAAAAATCATAAAAATT
* *
81544772 AAAAT-ATTAAAAATTTATAAAAGTATTATAAAAATT
1 AAAATAATTAAAAATTTATAAAA-AATCATAAAAATT
81544808 A
1 A
81544809 TAAAAAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
35 15 0.48
36 16 0.52
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (36 bp):
AAAATAATTAAAAATTTATAAAAAATCATAAAAATT
Found at i:81544814 original size:21 final size:22
Alignment explanation
Indices: 81544779--81544888 Score: 75
Period size: 21 Copynumber: 4.8 Consensus size: 22
81544769 ATTAAAATAT
*
81544779 TAAAAATT-TATAAAAGTA-TTA
1 TAAAAATTATA-AAAAATATTTA
81544800 TAAAAATTATAAAAAATATTTA
1 TAAAAATTATAAAAAATATTTA
* *
81544822 GACAAAATTATAAAAAA-A-ATA
1 TA-AAAATTATAAAAAATATTTA
*
81544843 CAAAAACTTATAAAAAATCACAAATGTTA
1 TAAAAA-TTATAAAAAAT-----AT-TTA
81544872 TAAAAATTATAAAAAAT
1 TAAAAATTATAAAAAAT
81544889 CATAAAAACT
Statistics
Matches: 71, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
20 4 0.06
21 27 0.38
22 7 0.10
23 14 0.20
27 1 0.01
28 11 0.15
29 7 0.10
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.29
Consensus pattern (22 bp):
TAAAAATTATAAAAAATATTTA
Found at i:81544816 original size:10 final size:10
Alignment explanation
Indices: 81544779--81545132 Score: 120
Period size: 10 Copynumber: 35.4 Consensus size: 10
81544769 ATTAAAATAT
*
81544779 TAAAAATTTA
1 TAAAAAATTA
*
81544789 TAAAAGTATTA
1 TAAAA-AATTA
81544800 T-AAAAATTA
1 TAAAAAATTA
*
81544809 TAAAAAATATT
1 TAAAAAAT-TA
81544820 TAGACAAAATTA
1 TA-A-AAAATTA
*
81544832 TAAAAAA-AA
1 TAAAAAATTA
81544841 TACAAAAACTTA
1 TA-AAAAA-TTA
*
81544853 TAAAAAATCA
1 TAAAAAATTA
* **
81544863 -CAAATGTTA
1 TAAAAAATTA
81544872 T-AAAAATTA
1 TAAAAAATTA
*
81544881 TAAAAAATCA
1 TAAAAAATTA
*
81544891 TAAAAACTTA
1 TAAAAAATTA
* **
81544901 TGATATTATT-
1 T-AAAAAATTA
*
81544911 TAAAAATTTA
1 TAAAAAATTA
*
81544921 TTAAAAATT-
1 TAAAAAATTA
** *
81544930 TTTAAATTTA
1 TAAAAAATTA
* *
81544940 TATAAACTTA
1 TAAAAAATTA
** *
81544950 T--AATTTTT
1 TAAAAAATTA
**
81544958 TAAGAAAAACA
1 TAA-AAAATTA
81544969 TAGATAAAATTTA
1 TA-A-AAAA-TTA
*
81544982 TAAAAACTT-
1 TAAAAAATTA
*
81544991 TAAAAAATAA
1 TAAAAAATTA
81545001 TAAAAAATTA
1 TAAAAAATTA
* *
81545011 T-GAACATTA
1 TAAAAAATTA
*
81545020 TAAAAACTTA
1 TAAAAAATTA
* * **
81545030 TTAACAATCC
1 TAAAAAATTA
81545040 TAAAAAA-TA
1 TAAAAAATTA
*
81545049 TAATAAAAATA
1 TAA-AAAATTA
*
81545060 TGAAAAATTA
1 TAAAAAATTA
*
81545070 T-AAAACTTA
1 TAAAAAATTA
* *
81545079 GAAAAAATCA
1 TAAAAAATTA
*
81545089 TAAAAACTTA
1 TAAAAAATTA
*
81545099 TAAAAAAATA
1 TAAAAAATTA
* *
81545109 TAATAAGTTA
1 TAAAAAATTA
*
81545119 TAAAAAGTTA
1 TAAAAAATTA
81545129 TAAA
1 TAAA
81545133 TTTTTGAAAT
Statistics
Matches: 246, Mismatches: 75, Indels: 46
0.67 0.20 0.13
Matches are distributed among these distances:
8 5 0.02
9 55 0.22
10 137 0.56
11 28 0.11
12 13 0.05
13 8 0.03
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:81544859 original size:12 final size:11
Alignment explanation
Indices: 81544780--81544859 Score: 53
Period size: 11 Copynumber: 7.5 Consensus size: 11
81544770 TTAAAATATT
*
81544780 AAAAATTTATA
1 AAAAAATTATA
**
81544791 AAAGTATTAT-
1 AAAAAATTATA
81544801 -AAAAATTATA
1 AAAAAATTATA
81544811 AAAAATATT-TA
1 AAAAA-ATTATA
*
81544822 GACAAAATTATA
1 -AAAAAATTATA
81544834 AAAAAA--ATA
1 AAAAAATTATA
*
81544843 CAAAAACTTATA
1 -AAAAAATTATA
81544855 AAAAA
1 AAAAA
81544860 TCACAAATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
9 10 0.19
10 5 0.09
11 26 0.49
12 12 0.23
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.28
Consensus pattern (11 bp):
AAAAAATTATA
Found at i:81544930 original size:19 final size:20
Alignment explanation
Indices: 81544908--81544945 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
81544898 TTATGATATT
81544908 ATTTAAAAATTTAT-TAAAA
1 ATTTAAAAATTTATATAAAA
**
81544927 ATTTTTAAATTTATATAAA
1 ATTTAAAAATTTATATAAA
81544946 CTTATAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTAAAAATTTATATAAAA
Found at i:81545062 original size:49 final size:48
Alignment explanation
Indices: 81544991--81545123 Score: 135
Period size: 49 Copynumber: 2.7 Consensus size: 48
81544981 ATAAAAACTT
* * ** * *
81544991 TAAAAAATAATAAAAAATTATG-AACATTATAAAAACTTATTAACAATCC
1 TAAAAAAT-ATAAAAAAATATGAAAAATTAT-AAAACTTAGAAAAAATCA
81545040 TAAAAAATATAATAAAAATATGAAAAATTATAAAACTTAGAAAAAATCA
1 TAAAAAATATAA-AAAAATATGAAAAATTATAAAACTTAGAAAAAATCA
* *
81545089 TAAAAACTTATAAAAAAATAT-AATAAGTTATAAAA
1 TAAAAA-ATATAAAAAAATATGAA-AAATTATAAAA
81545124 AGTTATAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
48 6 0.08
49 54 0.75
50 12 0.17
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (48 bp):
TAAAAAATATAAAAAAATATGAAAAATTATAAAACTTAGAAAAAATCA
Found at i:81545067 original size:20 final size:21
Alignment explanation
Indices: 81545042--81545114 Score: 66
Period size: 18 Copynumber: 3.6 Consensus size: 21
81545032 AACAATCCTA
81545042 AAAAATATAATAAAAATAT-G
1 AAAAATATAATAAAAATATAG
*
81545062 AAAAAT-T-ATAAAACT-TAG
1 AAAAATATAATAAAAATATAG
* *
81545080 AAAAA-ATCATAAAAACTTATAA
1 AAAAATATAATAAAAA--TATAG
81545102 AAAAATATAATAA
1 AAAAATATAATAA
81545115 GTTATAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
17 1 0.02
18 14 0.33
19 7 0.17
20 6 0.14
21 1 0.02
22 7 0.17
23 6 0.14
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.25
Consensus pattern (21 bp):
AAAAATATAATAAAAATATAG
Found at i:81546898 original size:40 final size:40
Alignment explanation
Indices: 81546853--81546928 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
81546843 ACACACTATG
* * * *
81546853 TGGGGATAAGATCGACCTACCCAGCCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
**
81546893 TGGGGATAAAATCAACCCATTCAACCCTACACACCA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCA
81546929 TGAGGTACCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.36, C:0.33, G:0.16, T:0.16
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:81554077 original size:40 final size:40
Alignment explanation
Indices: 81554005--81554099 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
81553995 CATCTCCGTC
* * *
81554005 CAACCCAACACACC-A-TGTGGGGATAAGATCAACCCACT
1 CAACCCTACACACCAAGTATGGGGATAAAATCAACCCACT
* * *
81554043 CAGCCCTACATACCAAGTATGGGGATAAAATCAACCCATT
1 CAACCCTACACACCAAGTATGGGGATAAAATCAACCCACT
*
81554083 CAACCTTACACACCAAG
1 CAACCCTACACACCAAG
81554100 GGGTACCGTA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
38 11 0.24
39 1 0.02
40 34 0.74
ACGTcount: A:0.38, C:0.33, G:0.14, T:0.16
Consensus pattern (40 bp):
CAACCCTACACACCAAGTATGGGGATAAAATCAACCCACT
Found at i:81558287 original size:40 final size:40
Alignment explanation
Indices: 81558243--81558422 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
81558233 AATGGTATTT
*
81558243 GGGCTTAAAGACTCGCAGGCTTCGTGCTGGAATCGTATCC
1 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCGTATCC
*
81558283 GGGCTTAAAGACCCGCAAGCTTCGTGCTGGAATCGTATCC
1 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCGTATCC
* *
81558323 GGGCTTAAAGACCCGCAGGCTTCGTGCTAGAATTGTATCC
1 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCGTATCC
*
81558363 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT-GACATCC
1 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCG-TATCC
* *
81558403 GGG-TTAAAAACCTGCAGGCT
1 GGGCTTAAAGACCCGCAGGCT
81558423 GTGCTAGATA
Statistics
Matches: 130, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 16 0.12
40 114 0.88
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.23
Consensus pattern (40 bp):
GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCGTATCC
Found at i:81562763 original size:19 final size:20
Alignment explanation
Indices: 81562735--81562776 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
81562725 CTTGAATTTG
81562735 TTATAAGTTTTTA-AAATAT
1 TTATAAGTTTTTATAAATAT
* *
81562754 TTATAGGTTTTTATAAATTT
1 TTATAAGTTTTTATAAATAT
81562774 TTA
1 TTA
81562777 AAATATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (20 bp):
TTATAAGTTTTTATAAATAT
Found at i:81562774 original size:10 final size:10
Alignment explanation
Indices: 81562701--81562788 Score: 58
Period size: 10 Copynumber: 8.9 Consensus size: 10
81562691 AATAACTTTT
81562701 TTTTTATAAA
1 TTTTTATAAA
81562711 TTGTTTAT-AA
1 TT-TTTATAAA
* *
81562721 TTTACT-TGAA
1 TTT-TTATAAA
*
81562731 TTTGTTATAAG
1 TTT-TTATAAA
81562742 TTTTTA-AAA
1 TTTTTATAAA
* **
81562751 TATTTATAGG
1 TTTTTATAAA
81562761 TTTTTATAAA
1 TTTTTATAAA
81562771 TTTTTA-AAA
1 TTTTTATAAA
*
81562780 TATTTATAA
1 TTTTTATAA
81562789 TATGTTTGGT
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
9 17 0.29
10 32 0.54
11 10 0.17
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.56
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:81562818 original size:17 final size:17
Alignment explanation
Indices: 81562798--81562874 Score: 61
Period size: 17 Copynumber: 4.4 Consensus size: 17
81562788 ATATGTTTGG
*
81562798 TTTTT-TAATTTTTTAA
1 TTTTTATAATTTATTAA
81562814 TTTTTATAATTTATTAAAA
1 TTTTTATAATTTATT--AA
81562833 TTTTTATAAGTTT-TGT-A
1 TTTTTATAA-TTTAT-TAA
*
81562850 TTTTTATAAGCTTATATAA
1 TTTTTATAA-TTTAT-TAA
81562869 TTTTTA
1 TTTTTA
81562875 AAGCAAAATT
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
16 5 0.10
17 21 0.41
18 2 0.04
19 19 0.37
20 4 0.08
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (17 bp):
TTTTTATAATTTATTAA
Found at i:81562873 original size:19 final size:19
Alignment explanation
Indices: 81562811--81562878 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
81562801 TTTAATTTTT
*
81562811 TAATTTTTATAA-TTTATTA
1 TAATTTTTATAAGCTTA-TA
* * *
81562830 AAATTTTTATAAG-TTTTG
1 TAATTTTTATAAGCTTATA
81562848 T-ATTTTTATAAGCTTATA
1 TAATTTTTATAAGCTTATA
81562866 TAATTTTTA-AAGC
1 TAATTTTTATAAGC
81562879 AAAATTTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
17 11 0.28
18 9 0.22
19 20 0.50
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (19 bp):
TAATTTTTATAAGCTTATA
Found at i:81562922 original size:51 final size:50
Alignment explanation
Indices: 81562829--81562924 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 50
81562819 ATAATTTATT
* * *
81562829 AAAATTTTTATAAGTTTTGTATTTTTATAAGCTTATATAATTTTTAAAGC
1 AAAATTTATATAAATTTTGTATTTTTATAAGATTATATAATTTTTAAAGC
*
81562879 AAAATTTATATAAATTTT-TAATATTTTATAATATTA-ATAAATTTTT
1 AAAATTTATATAAATTTTGT-AT-TTTTATAAGATTATAT-AATTTTT
81562925 TATGATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
49 1 0.03
50 20 0.51
51 18 0.46
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (50 bp):
AAAATTTATATAAATTTTGTATTTTTATAAGATTATATAATTTTTAAAGC
Found at i:81572206 original size:3 final size:3
Alignment explanation
Indices: 81572198--81572252 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
81572188 GATGGGGCTA
81572198 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
81572246 AAT AAT A
1 AAT AAT A
81572253 GGCTATGTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:81574386 original size:56 final size:56
Alignment explanation
Indices: 81574324--81574438 Score: 230
Period size: 56 Copynumber: 2.1 Consensus size: 56
81574314 ACCCAAACTT
81574324 TCATTCACCTACACAACCCAAAATAGCATATAACATAGCATAAATAGGCATTCCAA
1 TCATTCACCTACACAACCCAAAATAGCATATAACATAGCATAAATAGGCATTCCAA
81574380 TCATTCACCTACACAACCCAAAATAGCATATAACATAGCATAAATAGGCATTCCAA
1 TCATTCACCTACACAACCCAAAATAGCATATAACATAGCATAAATAGGCATTCCAA
81574436 TCA
1 TCA
81574439 ATCTCAATCA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.44, C:0.27, G:0.07, T:0.22
Consensus pattern (56 bp):
TCATTCACCTACACAACCCAAAATAGCATATAACATAGCATAAATAGGCATTCCAA
Found at i:81579320 original size:25 final size:25
Alignment explanation
Indices: 81579292--81579342 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
81579282 ACCAAATAAG
81579292 ATAAATATTTTCTATCTATAATGAT
1 ATAAATATTTTCTATCTATAATGAT
*
81579317 ATAAATATTTTCTATCTGTAATGAT
1 ATAAATATTTTCTATCTATAATGAT
81579342 A
1 A
81579343 GAATTCGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (25 bp):
ATAAATATTTTCTATCTATAATGAT
Found at i:81580947 original size:26 final size:23
Alignment explanation
Indices: 81580898--81580945 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
81580888 TTAATCAAAC
*
81580898 TGGGAATAACCAATTATTAATGA
1 TGGGAACAACCAATTATTAATGA
81580921 TGGGAACAACCAATTATTAATGA
1 TGGGAACAACCAATTATTAATGA
81580944 TG
1 TG
81580946 ATTTAGCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (23 bp):
TGGGAACAACCAATTATTAATGA
Found at i:81583205 original size:42 final size:42
Alignment explanation
Indices: 81583146--81583350 Score: 257
Period size: 42 Copynumber: 4.9 Consensus size: 42
81583136 AAATGGTTTT
*
81583146 ACAAGCTGTGTATCAGTGAAGCTCCTCACATGAGCTTAAATG
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
* * * *
81583188 ACAAGCTATGTATCAGTGAAGCTCCCTAAATGAGCTTAAGTG
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
* ** * *
81583230 ATAAGCTGTGTATCAACGAAGCTCCCCACATGAGCTGAAGTG
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
* **
81583272 ACAAGTTGTGTATTGGTGAAGCTCCCCACATGAGCTTAAATG
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
** * *
81583314 ACAAGCTGTGTATCAACGAAGCTCCCCATACGAGCTT
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTT
81583351 GAGTGAATGT
Statistics
Matches: 136, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 136 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (42 bp):
ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
Found at i:81585847 original size:39 final size:39
Alignment explanation
Indices: 81585804--81585935 Score: 183
Period size: 39 Copynumber: 3.4 Consensus size: 39
81585794 TACTTGTACA
* * * *
81585804 CATATATTACATTACACATATAATCACGTAACATTTAAG
1 CATATATCACAATACTCATATAATCACATAACATTTAAG
* *
81585843 CATATATCACAATACTCATATAATCACATAGCTTTTAAG
1 CATATATCACAATACTCATATAATCACATAACATTTAAG
* *
81585882 CATACATCACAATACTCATATAATCACATAACATTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTTAAG
*
81585921 CATATACCACAATAC
1 CATATATCACAATAC
81585936 ACACAATCAT
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.30
Consensus pattern (39 bp):
CATATATCACAATACTCATATAATCACATAACATTTAAG
Found at i:81613527 original size:17 final size:17
Alignment explanation
Indices: 81613488--81613530 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
81613478 CTATGATTGT
**
81613488 ATTGA-ATTTGATGTTA
1 ATTGACATTTGATGGAA
*
81613504 ATGGACATTTGATGGAA
1 ATTGACATTTGATGGAA
81613521 ATTGACATTT
1 ATTGACATTT
81613531 TAAATGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.42
Consensus pattern (17 bp):
ATTGACATTTGATGGAA
Found at i:81619630 original size:64 final size:63
Alignment explanation
Indices: 81619549--81619733 Score: 201
Period size: 67 Copynumber: 2.9 Consensus size: 63
81619539 AGACATTATG
*
81619549 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
81619612 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
81619677 TA
62 TA
** * * * *
81619679 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCT
81619734 GAACTATATG
Statistics
Matches: 99, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 21 0.21
65 8 0.08
66 19 0.19
67 30 0.30
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:81621910 original size:46 final size:46
Alignment explanation
Indices: 81621855--81622082 Score: 296
Period size: 46 Copynumber: 5.0 Consensus size: 46
81621845 AGTGTGCTCT
* *
81621855 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
81621901 CTAATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
81621947 CTGATATGAAATGTGTAAGACCATGGTTCAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
81621993 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
81622039 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
81622083 TCATGTCAAA
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
45 1 0.01
46 159 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81633227 original size:16 final size:16
Alignment explanation
Indices: 81633208--81633238 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81633198 CAAATAAAAA
81633208 TAAAAATAAAAGTAAT
1 TAAAAATAAAAGTAAT
*
81633224 TAAAAATAACAGTAA
1 TAAAAATAAAAGTAA
81633239 AGACAAACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (16 bp):
TAAAAATAAAAGTAAT
Found at i:81633239 original size:22 final size:22
Alignment explanation
Indices: 81633189--81633239 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
81633179 CTAATTTGCC
81633189 CAGTAAAAGCAAATAAAAATAA
1 CAGTAAAAGCAAATAAAAATAA
* * * *
81633211 AAATAAAAGTAATTAAAAATAA
1 CAGTAAAAGCAAATAAAAATAA
81633233 CAGTAAA
1 CAGTAAA
81633240 GACAAACAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.69, C:0.06, G:0.08, T:0.18
Consensus pattern (22 bp):
CAGTAAAAGCAAATAAAAATAA
Found at i:81635853 original size:32 final size:28
Alignment explanation
Indices: 81635792--81635848 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
81635782 CAGAATACAA
81635792 ATTCAGTCAGTCAATCAAAAGGAGACAC
1 ATTCAGTCAGTCAATCAAAAGGAGACAC
81635820 ATTCAGTCAGTCAATCAAAAGGAGACAC
1 ATTCAGTCAGTCAATCAAAAGGAGACAC
81635848 A
1 A
81635849 CACATCCGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.18
Consensus pattern (28 bp):
ATTCAGTCAGTCAATCAAAAGGAGACAC
Found at i:81636878 original size:21 final size:22
Alignment explanation
Indices: 81636854--81636894 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
81636844 AAGAAAAAAG
81636854 AAGAACAAA-AGAACAAAAACC
1 AAGAACAAACAGAACAAAAACC
*
81636875 AAGAAGAAACAGAACAAAAA
1 AAGAACAAACAGAACAAAAA
81636895 ATAACGTGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (22 bp):
AAGAACAAACAGAACAAAAACC
Found at i:81638370 original size:20 final size:20
Alignment explanation
Indices: 81638321--81638370 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
81638311 ATTTCTAATC
** *
81638321 TTTAATTTGGATTCCTTTTT
1 TTTAATTTTTATTACTTTTT
81638341 TTT-ATATTTTATTACTTTTT
1 TTTAAT-TTTTATTACTTTTT
81638361 TTTAATTTTT
1 TTTAATTTTT
81638371 TCCCTTTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.18, C:0.06, G:0.04, T:0.72
Consensus pattern (20 bp):
TTTAATTTTTATTACTTTTT
Found at i:81638377 original size:19 final size:20
Alignment explanation
Indices: 81638331--81638373 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
81638321 TTTAATTTGG
81638331 ATTCCTTTTTTTTATATTTT
1 ATTCCTTTTTTTTATATTTT
*
81638351 ATTACTTTTTTTTA-ATTTT
1 ATTCCTTTTTTTTATATTTT
81638370 -TTCC
1 ATTCC
81638374 CTTTCAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 5 0.24
20 13 0.62
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (20 bp):
ATTCCTTTTTTTTATATTTT
Found at i:81640046 original size:14 final size:15
Alignment explanation
Indices: 81640021--81640049 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81640011 TATACAACGA
81640021 TTTAACTTAATTAAC
1 TTTAACTTAATTAAC
81640036 TTTAA-TTAATTAAC
1 TTTAACTTAATTAAC
81640050 ATAATATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (15 bp):
TTTAACTTAATTAAC
Found at i:81650321 original size:29 final size:29
Alignment explanation
Indices: 81650279--81650338 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
81650269 TATTAGTCTA
81650279 AATTTAGAGGTTGAATAAAATATGAAATT
1 AATTTAGAGGTTGAATAAAATATGAAATT
81650308 AATTTAGAGGTTGAATAAAATATGAAATT
1 AATTTAGAGGTTGAATAAAATATGAAATT
81650337 AA
1 AA
81650339 ATCTTATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (29 bp):
AATTTAGAGGTTGAATAAAATATGAAATT
Found at i:81652124 original size:40 final size:39
Alignment explanation
Indices: 81652087--81652264 Score: 155
Period size: 40 Copynumber: 4.5 Consensus size: 39
81652077 ATATCCGGAC
81652087 TAAGATCCGAAGGCATTTGTGCGAGATACAAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACAAATTCCGGGT
* * * *
81652127 TAAGCCCCGAAGGCCTTTGTGTGAGATACTAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACAAATTCCGGGT
* * *
81652167 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA-TCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGT
* * * * *
81652207 TATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA-ACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
*
81652246 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
81652265 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
39 33 0.28
40 81 0.70
41 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACAAATTCCGGGT
Found at i:81652177 original size:80 final size:79
Alignment explanation
Indices: 81652093--81652264 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
81652083 GGACTAAGAT
*
81652093 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGTGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGTGAGATACT
** *
81652157 AATTCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * *
81652173 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGTGAGATACTAA
*
81652238 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
81652252 CCGAAGGCATTTG
1 CCGAAGGCATTTG
81652265 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGTGAGATACTAA
AACCGGGCTAAGTC
Found at i:81652282 original size:79 final size:80
Alignment explanation
Indices: 81652120--81652297 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
81652110 AGATACAAAT
* * ** *
81652120 TCCGGGTTAAGCCCCGAAGGCCTTTGTGTGAGATACTAATTCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGTGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
81652185 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
81652200 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGTGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
81652264 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
81652279 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
81652298 TATGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGTGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:81660089 original size:40 final size:40
Alignment explanation
Indices: 81659942--81660161 Score: 190
Period size: 40 Copynumber: 5.7 Consensus size: 40
81659932 TTGAATGCTG
* * * *
81659942 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
**
81659982 TCCGGACTAAGAT-CCGAAGGCATTTGT-CGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
81660020 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
81660060 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
81660100 TCC-GGTTATGT-CCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
81660137 -ACGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
81660162 AACGAGGAGC
Statistics
Matches: 152, Mismatches: 17, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
36 1 0.01
37 21 0.14
38 33 0.22
39 39 0.26
40 51 0.34
41 7 0.05
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:81677783 original size:47 final size:47
Alignment explanation
Indices: 81677724--81678004 Score: 427
Period size: 47 Copynumber: 5.9 Consensus size: 47
81677714 TAGCATGGCG
*
81677724 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
81677771 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTCATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
81677820 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
81677867 TAATGGCCGATGTGATGAAAGTGAAAGTGTATATATGAGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
81677914 TAATGGCCGATGTGATGAATGTGAAATTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
81677961 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
81678005 TCCCGAAGGG
Statistics
Matches: 213, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 167 0.78
49 46 0.22
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:81678179 original size:37 final size:37
Alignment explanation
Indices: 81678123--81678201 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
81678113 CCGAGCTCTA
* * *
81678123 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
81678160 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
81678197 AAGAC
1 AAGAC
81678202 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:81679698 original size:40 final size:40
Alignment explanation
Indices: 81679415--81679680 Score: 381
Period size: 40 Copynumber: 6.7 Consensus size: 40
81679405 GAGAATTGAG
81679415 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
81679455 AGTGATATATCCGGGCTAAGTCCCGAGGAGTATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
81679495 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
81679535 AATGATATATCCGGGCTAAGTCTCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * * *
81679575 AGTGATGTATCCTGGCTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
81679615 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
81679655 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
81679681 AGAGTAATCA
Statistics
Matches: 200, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
39 1 0.00
40 197 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:81683130 original size:25 final size:25
Alignment explanation
Indices: 81683102--81683180 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
81683092 GTAATGACCG
81683102 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
81683127 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
81683149 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
81683174 ATGTGAT
1 ATGTGAT
81683181 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:81683152 original size:47 final size:47
Alignment explanation
Indices: 81683093--81683420 Score: 557
Period size: 47 Copynumber: 6.9 Consensus size: 47
81683083 TAGTATGGCG
*
81683093 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
81683140 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
81683187 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
81683236 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
81683283 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
81683330 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
81683377 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
81683421 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 221 0.82
49 47 0.18
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:81683351 original size:143 final size:141
Alignment explanation
Indices: 81683093--81683420 Score: 557
Period size: 143 Copynumber: 2.3 Consensus size: 141
81683083 TAGTATGGCG
*
81683093 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81683158 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
81683223 ATGTGATAAGGCC
129 ATGTGACAAGGCC
81683236 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
81683301 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
81683366 GTGACAGGGCC
131 GTGACAAGGCC
* * * * * *
81683377 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
81683421 TCCCGAAGGG
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 54 0.31
143 122 0.69
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGACAAGGCC
Found at i:81683595 original size:37 final size:37
Alignment explanation
Indices: 81683539--81683617 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
81683529 CCGAGCTCTA
* * * *
81683539 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
*
81683576 AAGACCCGATAACTTCGTGTGGAGATTATGCCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
81683613 AAGAC
1 AAGAC
81683618 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGCCCGGGT
Found at i:81687305 original size:16 final size:16
Alignment explanation
Indices: 81687284--81687316 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
81687274 ACAAAAGTTC
81687284 ATCTCATTTCATACCA
1 ATCTCATTTCATACCA
81687300 ATCTCATTTCATACCA
1 ATCTCATTTCATACCA
81687316 A
1 A
81687317 CAATGTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (16 bp):
ATCTCATTTCATACCA
Found at i:81693164 original size:93 final size:93
Alignment explanation
Indices: 81693057--81693227 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81693047 GCCCCTAAGT
* *
81693057 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
81693122 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
81693150 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81693215 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81693228 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81693224 original size:46 final size:46
Alignment explanation
Indices: 81693052--81693224 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
81693042 AACCCGCCCC
* * * *
81693052 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCA
* * * *
81693098 TAAGTGAACTCGGACTCAACTCAACGAGTTTGG--ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTA--TCCA
* *
81693144 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCA
*
81693191 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81693225 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 63 0.61
47 30 0.29
48 2 0.02
49 5 0.05
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCA
Found at i:81695344 original size:23 final size:23
Alignment explanation
Indices: 81695318--81695366 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
81695308 ACAGAATTTG
81695318 CCACAAAGGCCATA-AAGAATACA
1 CCACAAAGGCCATACAA-AATACA
* *
81695341 CCACATAGGCTATACAAAATACA
1 CCACAAAGGCCATACAAAATACA
81695364 CCA
1 CCA
81695367 TAAATGATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 21 0.91
24 2 0.09
ACGTcount: A:0.49, C:0.29, G:0.10, T:0.12
Consensus pattern (23 bp):
CCACAAAGGCCATACAAAATACA
Found at i:81701311 original size:17 final size:18
Alignment explanation
Indices: 81701289--81701322 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81701279 CACATTGAAG
81701289 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
81701306 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
81701323 CTTCTTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:81710405 original size:23 final size:23
Alignment explanation
Indices: 81710375--81710422 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
81710365 GTGAGGAAGA
81710375 AGGAAATTTTTGCTTAAATTTTC
1 AGGAAATTTTTGCTTAAATTTTC
81710398 AGGAAATTTTTGCTTAAATTTTC
1 AGGAAATTTTTGCTTAAATTTTC
81710421 AG
1 AG
81710423 CTTAGGTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (23 bp):
AGGAAATTTTTGCTTAAATTTTC
Found at i:81727328 original size:28 final size:28
Alignment explanation
Indices: 81727285--81727387 Score: 107
Period size: 28 Copynumber: 3.7 Consensus size: 28
81727275 TGGCCGCTTT
* * *
81727285 AGGCCCAATCTCATTCATATGGCTCATT
1 AGGCCCAATCACATTCATATGGCCCATC
* **
81727313 GGGCCTGATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
81727341 AGGCCCAATCACTTTCATATGGACCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
81727369 AGGCTCAATCACTTTCATA
1 AGGCCCAATCACATTCATA
81727388 GTCATGCAAT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:81731560 original size:80 final size:79
Alignment explanation
Indices: 81731476--81731647 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
81731466 GGACTAAGAT
*
81731476 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
81731540 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
81731556 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
81731621 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
81731635 CCGAAGGCATTTG
1 CCGAAGGCATTTG
81731648 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:81731627 original size:39 final size:39
Alignment explanation
Indices: 81731423--81731645 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
81731413 TTGAATGCTG
* * * * *
81731423 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
81731463 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
81731502 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
81731543 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
81731583 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
81731622 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81731646 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:81735631 original size:7 final size:7
Alignment explanation
Indices: 81735619--81735659 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
81735609 ACTACATAGG
81735619 TTTTTAT
1 TTTTTAT
81735626 TTTTTAT
1 TTTTTAT
81735633 TTTTTAT
1 TTTTTAT
81735640 TTTTTAT
1 TTTTTAT
81735647 TTTTTAT
1 TTTTTAT
81735654 TTTTTA
1 TTTTTA
81735660 GAACAAGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:81738649 original size:93 final size:93
Alignment explanation
Indices: 81738537--81738708 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
81738527 GCGCATAAGT
* * * *
81738537 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81738602 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
81738630 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
81738695 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
81738709 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:81738704 original size:46 final size:46
Alignment explanation
Indices: 81738530--81738704 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
81738520 GTAACCCGCG
* *
81738530 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATC
* * *
81738576 CATAAGTGAACTCGGGCTCAACTCAACGAGCTCGG--ATGC-CTAGTTA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TC
*** * *
81738622 CATCTCTCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATC
1 CATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATC
*
81738669 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81738705 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATC
Found at i:81741135 original size:30 final size:30
Alignment explanation
Indices: 81741091--81741159 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
81741081 CAAAGATAAC
*
81741091 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* * *
81741120 GAGAAACCCAGAATAAAGAGATCCAGGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
81741150 AAGAAACCCA
1 AAGAAACCCA
81741160 AGATACGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:81741164 original size:15 final size:15
Alignment explanation
Indices: 81741102--81741164 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
81741092 AGAAAACCGA
*
81741102 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
81741117 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* * *
81741131 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
81741147 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
81741162 ATA
1 ATA
81741165 CGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:81743719 original size:93 final size:93
Alignment explanation
Indices: 81743611--81743782 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81743601 GCCCATAAGT
* * *
81743611 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
81743676 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
81743704 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
81743769 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
81743783 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:81743778 original size:46 final size:46
Alignment explanation
Indices: 81743603--81743778 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
81743593 TGTAACCCGC
* * *
81743603 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
81743649 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
81743695 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
81743742 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
81743779 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:81746301 original size:40 final size:40
Alignment explanation
Indices: 81746206--81746423 Score: 286
Period size: 40 Copynumber: 5.5 Consensus size: 40
81746196 TGGATGATAA
*
81746206 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
81746247 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
81746287 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81746327 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81746367 CCGGGCTATGTCCCGAAGGCA-TTGAT-CGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTA-CTATAT
* *
81746406 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81746424 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
38 15 0.09
39 14 0.09
40 105 0.65
41 24 0.15
42 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81759946 original size:36 final size:36
Alignment explanation
Indices: 81759884--81759973 Score: 128
Period size: 36 Copynumber: 2.5 Consensus size: 36
81759874 TTAGCTCTTA
*
81759884 TGAGCATCTGGCGTG-TTTGGAGGGATTGGCTCATG
1 TGAGCATCTGGTGTGTTTTGGAGGGATTGGCTCATG
* *
81759919 TGAGCATATGGTGTGTTTTGGAGGGATTGGCTCGTG
1 TGAGCATCTGGTGTGTTTTGGAGGGATTGGCTCATG
* *
81759955 TAAGCTTCTGGTGTGTTTT
1 TGAGCATCTGGTGTGTTTT
81759974 TGGTTGGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
35 13 0.27
36 35 0.73
ACGTcount: A:0.13, C:0.11, G:0.38, T:0.38
Consensus pattern (36 bp):
TGAGCATCTGGTGTGTTTTGGAGGGATTGGCTCATG
Found at i:81763691 original size:22 final size:22
Alignment explanation
Indices: 81763666--81763763 Score: 87
Period size: 22 Copynumber: 4.4 Consensus size: 22
81763656 GTCATGGTCG
*
81763666 GTAAGCTCCT-TTGAGCTGAATA
1 GTAAGCTCCTAATGAGCTGAA-A
*
81763688 GTAAGCT-CTATTGAGCTGAAA
1 GTAAGCTCCTAATGAGCTGAAA
*
81763709 CGATAAGCT-CTAATGAGCTGAAC
1 -G-TAAGCTCCTAATGAGCTGAAA
81763732 GATAAGCTCC-AATGAGCTGAAATA
1 G-TAAGCTCCTAATGAGCTG-AA-A
81763756 GTAAGCTC
1 GTAAGCTC
81763764 TTACGAGCTA
Statistics
Matches: 67, Mismatches: 3, Indels: 11
0.83 0.04 0.14
Matches are distributed among these distances:
21 3 0.04
22 35 0.52
23 28 0.42
24 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (22 bp):
GTAAGCTCCTAATGAGCTGAAA
Found at i:81763719 original size:23 final size:23
Alignment explanation
Indices: 81763677--81763753 Score: 106
Period size: 22 Copynumber: 3.4 Consensus size: 23
81763667 TAAGCTCCTT
*
81763677 TGAGCTGAATA-G-TAAGCTCTAT
1 TGAGCTGAA-ACGATAAGCTCTAA
81763699 TGAGCTGAAACGATAAGCTCTAA
1 TGAGCTGAAACGATAAGCTCTAA
*
81763722 TGAGCTG-AACGATAAGCTCCAA
1 TGAGCTGAAACGATAAGCTCTAA
81763744 TGAGCTGAAA
1 TGAGCTGAAA
81763754 TAGTAAGCTC
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
21 1 0.02
22 31 0.62
23 18 0.36
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (23 bp):
TGAGCTGAAACGATAAGCTCTAA
Found at i:81763772 original size:23 final size:23
Alignment explanation
Indices: 81763677--81763764 Score: 101
Period size: 22 Copynumber: 3.9 Consensus size: 23
81763667 TAAGCTCCTT
*
81763677 TGAGCTG-AATAGTAAGCTCTAT
1 TGAGCTGAAATAGTAAGCTCTAA
*
81763699 TGAGCTGAAA-CGATAAGCTCTAA
1 TGAGCTGAAATAG-TAAGCTCTAA
** *
81763722 TGAGCTGAACGA-TAAGCTCCAA
1 TGAGCTGAAATAGTAAGCTCTAA
81763744 TGAGCTGAAATAGTAAGCTCT
1 TGAGCTGAAATAGTAAGCTCT
81763765 TACGAGCTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
22 27 0.50
23 27 0.50
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (23 bp):
TGAGCTGAAATAGTAAGCTCTAA
Found at i:81766060 original size:22 final size:22
Alignment explanation
Indices: 81766035--81766080 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
81766025 TTGTTGATAG
81766035 ATAAACAACTTTTGTAAAGTGA
1 ATAAACAACTTTTGTAAAGTGA
81766057 ATAAACAACTTTTGTAAAGTGA
1 ATAAACAACTTTTGTAAAGTGA
81766079 AT
1 AT
81766081 TTTGATGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.33
Consensus pattern (22 bp):
ATAAACAACTTTTGTAAAGTGA
Found at i:81766820 original size:64 final size:63
Alignment explanation
Indices: 81766715--81766842 Score: 188
Period size: 64 Copynumber: 2.0 Consensus size: 63
81766705 CGAGCATCCC
81766715 GATCGGTAGTGATCCTGCATGTGTTGCGTACATACCACAGCTCGTTT-TGAGCGTCCTATTATAT
1 GATCGGTAGTGATCCTGCATGTGTTGCGTACATACCACAGCTC-TTTATGAGCGTCCTATT-TAT
* * *
81766779 GATCGGTAGTGATCTTGCATGTGTTGCAG-ACATATCGCAGCTCTTTATGAGCGTCCTATTTAT
1 GATCGGTAGTGATCCTGCATGTGTTGC-GTACATACCACAGCTCTTTATGAGCGTCCTATTTAT
81766842 G
1 G
81766843 GATCTCTGGA
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
63 7 0.12
64 51 0.86
65 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.35
Consensus pattern (63 bp):
GATCGGTAGTGATCCTGCATGTGTTGCGTACATACCACAGCTCTTTATGAGCGTCCTATTTAT
Found at i:81769580 original size:48 final size:48
Alignment explanation
Indices: 81769528--81769620 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
81769518 ACGATGTCTC
* * * *
81769528 ATATCGATGCCAATGTCATATCCCAGATATGGTATTACATGGGATCAA
1 ATATCAATGCCAATGCCATATCCCAAACATGGTATTACATGGGATCAA
* *
81769576 ATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGAT
1 ATATCAATGCCAATGCCATATCCCAAACATGGTATTACATGGGAT
81769621 TGCATATAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (48 bp):
ATATCAATGCCAATGCCATATCCCAAACATGGTATTACATGGGATCAA
Found at i:81771493 original size:26 final size:26
Alignment explanation
Indices: 81771462--81771535 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
81771452 TTATCATCCC
* *
81771462 AATTTTACCCTAA-TAAATTTTTTGAT
1 AATTTTACCCCAAGTAAA-ATTTTGAT
81771488 AATTTTACCCCAAGTAAAATTTTGAT
1 AATTTTACCCCAAGTAAAATTTTGAT
* *
81771514 GATTTTACCCCCAGTAAAATTT
1 AATTTTACCCCAAGTAAAATTT
81771536 CGAGAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 39 0.91
27 4 0.09
ACGTcount: A:0.35, C:0.16, G:0.07, T:0.42
Consensus pattern (26 bp):
AATTTTACCCCAAGTAAAATTTTGAT
Found at i:81771657 original size:6 final size:6
Alignment explanation
Indices: 81771646--81771680 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
81771636 AAGATTGCAA
* *
81771646 ATTTTC ATTTTC ACTTTC ATTTTC ATTTCC ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
81771681 TGGAAACCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (6 bp):
ATTTTC
Found at i:81774331 original size:17 final size:17
Alignment explanation
Indices: 81774309--81774341 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81774299 TAAAATTAGG
81774309 TTGAGAAATTTATTTAA
1 TTGAGAAATTTATTTAA
*
81774326 TTGAGAATTTTATTTA
1 TTGAGAAATTTATTTA
81774342 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (17 bp):
TTGAGAAATTTATTTAA
Found at i:81779637 original size:30 final size:30
Alignment explanation
Indices: 81779603--81779663 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
81779593 TCCTTAACTC
81779603 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
81779633 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
81779663 A
1 A
81779664 GCCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:81782910 original size:43 final size:43
Alignment explanation
Indices: 81782860--81782946 Score: 117
Period size: 43 Copynumber: 2.0 Consensus size: 43
81782850 TTATGATTCC
*
81782860 GATATGTGTTTACGA-GTAAGACC-CTGTCTGGGATAG-TGGCATT
1 GATATGTGGTTAC-ATGTAAGACCAC-GTCTGGGAT-GTTGGCATT
81782903 GATATGTGGTTACATGTAAGACCACGTCTGGGATGTTGGCATT
1 GATATGTGGTTACATGTAAGACCACGTCTGGGATGTTGGCATT
81782946 G
1 G
81782947 TACTATTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 2 0.05
43 37 0.93
44 1 0.03
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (43 bp):
GATATGTGGTTACATGTAAGACCACGTCTGGGATGTTGGCATT
Found at i:81787604 original size:29 final size:29
Alignment explanation
Indices: 81787570--81787643 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
81787560 TCATCAACCA
*
81787570 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
* **
81787599 CGCACACTCAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
81787628 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
81787644 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:81791982 original size:18 final size:18
Alignment explanation
Indices: 81791959--81791999 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
81791949 TGCTATAGGC
81791959 TAAATTGAAGTGGCCAAA
1 TAAATTGAAGTGGCCAAA
81791977 TAAATTGAAGTGGCCAAA
1 TAAATTGAAGTGGCCAAA
81791995 TAAAT
1 TAAAT
81792000 AGGAGTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (18 bp):
TAAATTGAAGTGGCCAAA
Found at i:81792006 original size:18 final size:18
Alignment explanation
Indices: 81791959--81792006 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
81791949 TGCTATAGGC
*
81791959 TAAATTGAAGTGGCCAAA
1 TAAATAGAAGTGGCCAAA
*
81791977 TAAATTGAAGTGGCCAAA
1 TAAATAGAAGTGGCCAAA
*
81791995 TAAATAGGAGTG
1 TAAATAGAAGTG
81792007 AAAAATAGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.44, C:0.08, G:0.25, T:0.23
Consensus pattern (18 bp):
TAAATAGAAGTGGCCAAA
Found at i:81792155 original size:26 final size:26
Alignment explanation
Indices: 81792126--81792207 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
81792116 TGATAAAAAT
*
81792126 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81792152 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81792178 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81792204 TGAT
1 TGAT
81792208 GGGCATGTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81793400 original size:8 final size:8
Alignment explanation
Indices: 81793387--81793416 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
81793377 AGATCGGCAC
81793387 AAGCCGAA
1 AAGCCGAA
81793395 AAGCCGAA
1 AAGCCGAA
*
81793403 ATGCCGAA
1 AAGCCGAA
81793411 AAGCCG
1 AAGCCG
81793417 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:81793839 original size:27 final size:27
Alignment explanation
Indices: 81793809--81793881 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
81793799 AGCGTCCTGT
*
81793809 TGGCTATGCCACAATTATCTGATCTGG
1 TGGCTCTGCCACAATTATCTGATCTGG
*
81793836 TGGCTCTGCCAC-ATATATCTGTTCTGG
1 TGGCTCTGCCACAAT-TATCTGATCTGG
81793863 TGGCTCTG-CACAA-TATCTG
1 TGGCTCTGCCACAATTATCTG
81793882 TAACGCCTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
25 6 0.14
26 5 0.12
27 31 0.74
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
TGGCTCTGCCACAATTATCTGATCTGG
Found at i:81797879 original size:12 final size:13
Alignment explanation
Indices: 81797851--81797883 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
81797841 TTATTTCTTT
81797851 TTCTCCATCTACC
1 TTCTCCATCTACC
*
81797864 TTCTCC-TCTTCC
1 TTCTCCATCTACC
81797876 TTCTCCAT
1 TTCTCCAT
81797884 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:81798973 original size:28 final size:28
Alignment explanation
Indices: 81798941--81799005 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
81798931 ATTTACTAGA
*
81798941 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* **
81798969 ATACCCCTATGTGTGCAAAATGACTTTT
1 ATACCCCTATGTATGCAAAATGACCATT
81798997 ATACCCCTA
1 ATACCCCTA
81799006 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:81799152 original size:28 final size:27
Alignment explanation
Indices: 81799111--81799200 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
81799101 AGGAAGCATC
81799111 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
81799139 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
81799166 CTGGTGGCACTGCCACAAAATATCTATAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
81799195 CTGGTG
1 CTGGTG
81799201 ACTTTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:81806106 original size:28 final size:28
Alignment explanation
Indices: 81806074--81806138 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
81806064 ATTTACTAGA
*
81806074 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
81806102 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
81806130 ATACCCCTA
1 ATACCCCTA
81806139 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:81806285 original size:28 final size:27
Alignment explanation
Indices: 81806244--81806323 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
81806234 AGGAAGCGTC
81806244 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
81806272 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
81806299 CTGGTGGCACTGCCACAAAATATCT
1 CTGGTGGCACTGCCAC-AAATATCT
81806324 ATATCTAGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
27 23 0.52
28 21 0.48
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:81808185 original size:27 final size:27
Alignment explanation
Indices: 81808154--81808331 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81808144 TAAATTGTAC
81808154 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81808181 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81808207 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81808235 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81808263 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81808290 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81808317 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81808332 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81808268 original size:82 final size:81
Alignment explanation
Indices: 81808155--81808310 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81808145 AAATTGTACA
* *
81808155 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81808219 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81808236 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81808301 TGCGAGTTGA
65 TGCGAATTGA
81808311 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81808322 original size:82 final size:81
Alignment explanation
Indices: 81808151--81808331 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81808141 GATTAAATTG
* *
81808151 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81808216 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81808232 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81808296 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81808314 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81808332 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81812915 original size:46 final size:46
Alignment explanation
Indices: 81812865--81813040 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
81812855 TGGTTGAGCA
81812865 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
81812911 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
81812958 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81813004 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81813041 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81813021 original size:93 final size:93
Alignment explanation
Indices: 81812862--81813032 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
81812852 GGATGGTTGA
* *
81812862 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
81812927 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
81812955 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
81813020 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81813033 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:81818294 original size:26 final size:26
Alignment explanation
Indices: 81818264--81818316 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
81818254 TTTATAGTTT
81818264 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
81818290 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
81818316 T
1 T
81818317 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:81828049 original size:14 final size:14
Alignment explanation
Indices: 81828032--81828081 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
81828022 CAGTTCGAAT
81828032 ATTTTTCAAAAAAA
1 ATTTTTCAAAAAAA
*
81828046 ATTTTACAAAAAAAA
1 ATTTTTC-AAAAAAA
* *
81828061 ATTATTTGAACAAAA
1 ATT-TTTCAAAAAAA
81828076 ATTTTT
1 ATTTTT
81828082 ATTTCCAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 9 0.30
15 19 0.63
16 2 0.07
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.38
Consensus pattern (14 bp):
ATTTTTCAAAAAAA
Found at i:81839820 original size:21 final size:19
Alignment explanation
Indices: 81839794--81839833 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
81839784 TTTCCTCAAT
81839794 GTAAAAATAAAAATAATCATA
1 GTAAAAA-AAAAAT-ATCATA
*
81839815 GTAAAAACAAAATATCATA
1 GTAAAAAAAAAATATCATA
81839834 AGAGAGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 5 0.28
21 7 0.39
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (19 bp):
GTAAAAAAAAAATATCATA
Found at i:81842280 original size:40 final size:40
Alignment explanation
Indices: 81842196--81842420 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
81842186 TTGAATGATG
* * * *
81842196 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
81842236 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81842276 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81842315 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81842355 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
81842396 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81842421 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81842438 original size:80 final size:80
Alignment explanation
Indices: 81842196--81842453 Score: 233
Period size: 80 Copynumber: 3.2 Consensus size: 80
81842186 TTGAATGATG
* * * * * * * *
81842196 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGTAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** *
81842259 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* *
81842276 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
81842340 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
81842355 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
81842419 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
81842435 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
81842454 TACGTGATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 73 0.48
80 76 0.50
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:81842442 original size:119 final size:119
Alignment explanation
Indices: 81842196--81842453 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
81842186 TTGAATGATG
* * *
81842196 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGTATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
81842261 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
81842315 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
81842378 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
81842435 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
81842454 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 82 0.71
120 31 0.27
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:81850297 original size:40 final size:40
Alignment explanation
Indices: 81850213--81850437 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
81850203 TTGAATGATG
* * * *
81850213 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
81850253 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81850293 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81850332 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81850372 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
81850413 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81850438 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81850455 original size:80 final size:79
Alignment explanation
Indices: 81850252--81850460 Score: 212
Period size: 80 Copynumber: 2.6 Consensus size: 79
81850242 AAGTGACCAT
* * ** * *
81850252 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCAT
81850315 TGGTGCGAGTTACTAA
64 TGGTGCGAGTTACTAA
* * ** *
81850331 ATCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCATT
*
81850396 TGTGCGAGTTACTATA
65 GGTGCGAGTTACTA-A
* *
81850412 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
81850461 ATTCTGAAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 51 0.45
80 58 0.51
81 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:81863460 original size:48 final size:47
Alignment explanation
Indices: 81863401--81863537 Score: 170
Period size: 47 Copynumber: 2.9 Consensus size: 47
81863391 GCCACATCAT
**
81863401 GAGAGCCAGTGTAAGACTATGTCTGGGACATGGGTTCGGCATTGAGAC
1 GAGAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGCATTGAGAC
* * * * *
81863449 GAGAGCTAGTGTAAGACATGTCTGGGGCAT-GCATCGGCCTCGAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGAC
81863495 GTA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 G-AGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATT
81863538 ATACCCTGTG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
46 24 0.32
47 26 0.35
48 25 0.33
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.23
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGAC
Found at i:81863520 original size:94 final size:94
Alignment explanation
Indices: 81863359--81863537 Score: 245
Period size: 94 Copynumber: 1.9 Consensus size: 94
81863349 TTGATTGTAT
* * *
81863359 GCTAGTGTAAGACATGTTTGAGACATGCATTGGCCACATCATGAGAGCCAGTGTAAGACTATGTC
1 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTC
**
81863424 TGGGACATGGGTTCGGCATTGAGACGAGA
66 TGGGACATGGCATCGGCATTGAGACGAGA
* * * *
81863453 GCTAGTGTAAGACATGTCTGGGGCATGCATCGGCCTCGA-GATGTA-AGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCAC-ATCATG-AGAGCCAGTGTAAGACCATG
81863516 TCTGGGACATGGCATCGGCATT
64 TCTGGGACATGGCATCGGCATT
81863538 ATACCCTGTG
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
94 72 0.97
95 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATTGAGACGAGA
Found at i:81878065 original size:15 final size:15
Alignment explanation
Indices: 81878041--81878070 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81878031 CTCCGACTCT
81878041 TTGGTCTTAAGAATG
1 TTGGTCTTAAGAATG
*
81878056 TTGGTTTTAAGAATG
1 TTGGTCTTAAGAATG
81878071 ATCGATTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (15 bp):
TTGGTCTTAAGAATG
Found at i:81880628 original size:30 final size:30
Alignment explanation
Indices: 81880592--81880662 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 30
81880582 TAGCTAAATG
*
81880592 GGCCCACACGCCCATGTGGTTTGCCCATGT
1 GGCCCACACGCCCAAGTGGTTTGCCCATGT
*
81880622 GGCCCACACGCCCAAGTGGTTTGCCCGTGT
1 GGCCCACACGCCCAAGTGGTTTGCCCATGT
81880652 GGCCCACACGC
1 GGCCCACACGC
81880663 TTTGCAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.14, C:0.39, G:0.28, T:0.18
Consensus pattern (30 bp):
GGCCCACACGCCCAAGTGGTTTGCCCATGT
Found at i:81890466 original size:18 final size:17
Alignment explanation
Indices: 81890443--81890490 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
81890433 GGCCCAAATT
81890443 CCCACACGCCCATGTGG
1 CCCACACGCCCATGTGG
* * *
81890460 ACCCACACACTCGTGTGG
1 -CCCACACGCCCATGTGG
81890478 CCCACACAGCCCA
1 CCCACAC-GCCCA
81890491 ATTCGGTCAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.23, C:0.48, G:0.19, T:0.10
Consensus pattern (17 bp):
CCCACACGCCCATGTGG
Found at i:81891699 original size:6 final size:6
Alignment explanation
Indices: 81891652--81891685 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
81891642 TTACTATTTA
81891652 ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTT
1 ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTT
81891686 TCTTTTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.68
Consensus pattern (6 bp):
ATTTGT
Found at i:81895925 original size:22 final size:22
Alignment explanation
Indices: 81895897--81895943 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
81895887 ACAGATTGTT
81895897 CATCAACAATGCCCTTCGAATC
1 CATCAACAATGCCCTTCGAATC
81895919 CATCAACAATGCCCTTCGAATC
1 CATCAACAATGCCCTTCGAATC
81895941 CAT
1 CAT
81895944 ATGTACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.09, T:0.23
Consensus pattern (22 bp):
CATCAACAATGCCCTTCGAATC
Found at i:81897153 original size:14 final size:14
Alignment explanation
Indices: 81897134--81897166 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
81897124 TCAATTTCTT
81897134 TTATTTTTTCATTC
1 TTATTTTTTCATTC
81897148 TTA-TTTTTCATTC
1 TTATTTTTTCATTC
81897161 TT-TTTT
1 TTATTTT
81897167 GGTCTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 15 0.83
14 3 0.17
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (14 bp):
TTATTTTTTCATTC
Found at i:81897156 original size:13 final size:12
Alignment explanation
Indices: 81897137--81897191 Score: 53
Period size: 12 Copynumber: 4.6 Consensus size: 12
81897127 ATTTCTTTTA
81897137 TTTTTTCATTCT
1 TTTTTTCATTCT
81897149 TATTTTTCATTCT
1 T-TTTTTCATTCT
81897162 TTTTTGGTC--TCT
1 TTTTT--TCATTCT
*
81897174 TTTTTT-ATACT
1 TTTTTTCATTCT
81897185 TTTTTTC
1 TTTTTTC
81897192 TCCTTTTCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
10 1 0.03
11 8 0.22
12 13 0.36
13 12 0.33
14 2 0.06
ACGTcount: A:0.09, C:0.15, G:0.04, T:0.73
Consensus pattern (12 bp):
TTTTTTCATTCT
Found at i:81904696 original size:104 final size:105
Alignment explanation
Indices: 81904582--81904770 Score: 299
Period size: 104 Copynumber: 1.8 Consensus size: 105
81904572 TGAGAAATTA
* * * *
81904582 AATTAATAGGTTAGATAATAATTTAAATTTTATTTGAGATAAATAGGAGTTTAAATTGAATTAGG
1 AATTAATAGGTTAAATAATAATTTAAATTTTAATTAAGATAAATAGGAGTTTAAATTAAATTAGG
*
81904647 -TAATTAGAGTTTTAATTTACATCAAATAATTGGGACTTT
66 AGAATTAGAGTTTTAATTTACATCAAATAATTGGGACTTT
* *
81904686 AATTAATAGGTTAAATAATAATTTAGATTTTAATTAAGATAATTAGGAGTTTAAATTAAATTAGG
1 AATTAATAGGTTAAATAATAATTTAAATTTTAATTAAGATAAATAGGAGTTTAAATTAAATTAGG
*
81904751 AGAATTAGGGTTTTAATTTA
66 AGAATTAGAGTTTTAATTTA
81904771 TTTAAAATAC
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
104 59 0.78
105 17 0.22
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.41
Consensus pattern (105 bp):
AATTAATAGGTTAAATAATAATTTAAATTTTAATTAAGATAAATAGGAGTTTAAATTAAATTAGG
AGAATTAGAGTTTTAATTTACATCAAATAATTGGGACTTT
Found at i:81909269 original size:80 final size:79
Alignment explanation
Indices: 81909185--81909356 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
81909175 GGACTAAGAT
*
81909185 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
81909249 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
81909265 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
81909330 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
81909344 CCGAAGGCATTTG
1 CCGAAGGCATTTG
81909357 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:81909336 original size:39 final size:39
Alignment explanation
Indices: 81909132--81909354 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
81909122 TTGAATGCTG
* * * * *
81909132 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
81909172 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
81909211 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
81909252 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
81909292 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
81909331 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81909355 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:81909374 original size:79 final size:80
Alignment explanation
Indices: 81909212--81909389 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
81909202 AGATACAAAT
* * * *
81909212 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
81909277 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
81909292 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
81909356 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
81909371 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
81909390 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Done.