Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 248 of 316
Found at i:81917152 original size:40 final size:40
Alignment explanation
Indices: 81917107--81917252 Score: 113
Period size: 40 Copynumber: 3.7 Consensus size: 40
81917097 AAGTGAATAT
*
81917107 ATCCGGACTAAGATCC-GAAGGCATTTGTGCGAGATAC-AA
1 ATCCGGACTAAG-CCCTGAAGGCATTTGTGCGAGATACTAA
** *
81917146 ATTCCGGGTTAAGCCCTGAAGGCCTTTGTGCGAGATACTAA
1 A-TCCGGACTAAGCCCTGAAGGCATTTGTGCGAGATACTAA
** * * *
81917187 ATCCGGGTTATGTCCC-GAAGGCA-TTGTGTGAGTTACTAA
1 ATCCGGACTAAG-CCCTGAAGGCATTTGTGCGAGATACTAA
* * *
81917226 AACCGGGCTATGTCCC-GAAGGCATTTG
1 ATCCGGACTAAG-CCCTGAAGGCATTTG
81917253 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 38 0.41
40 48 0.52
41 6 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGACTAAGCCCTGAAGGCATTTGTGCGAGATACTAA
Found at i:81917225 original size:39 final size:39
Alignment explanation
Indices: 81917121--81917250 Score: 156
Period size: 39 Copynumber: 3.3 Consensus size: 39
81917111 GGACTAAGAT
*
81917121 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAG-C
1 CCGAAGGCA-TTGTGCGAGATACTAAA-TCCGGGTTATGTC
*
81917160 CCTGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTATGTC
1 CC-GAAGG-CATTGTGCGAGATACTAAATCCGGGTTATGTC
* * * *
81917201 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTATGTC
81917240 CCGAAGGCATT
1 CCGAAGGCATT
81917251 TGAACGAGGA
Statistics
Matches: 80, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
39 40 0.50
40 33 0.41
41 7 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTATGTC
Found at i:81918700 original size:25 final size:25
Alignment explanation
Indices: 81918670--81918728 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
81918660 GGTATACTCC
81918670 ACGAGCTGTAAATCAGTAAGCTCAT
1 ACGAGCTGTAAATCAGTAAGCTCAT
** *
81918695 ACGAGCTACAAATCGGTAAGCTCAT
1 ACGAGCTGTAAATCAGTAAGCTCAT
*
81918720 ACAAGCTGT
1 ACGAGCTGT
81918729 GGCGTATCCG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (25 bp):
ACGAGCTGTAAATCAGTAAGCTCAT
Found at i:81920470 original size:42 final size:42
Alignment explanation
Indices: 81920424--81920506 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 42
81920414 GGGGTAAGTG
81920424 TTAGAGGTTAAGGG-T-AGAAGTTTAGGGTTTAT-GTTTTATGGC
1 TTAGAGGTTAAGGGTTAAG-AG-TTAGGGTTTATAG-TTTATGGC
* *
81920466 TTAGAGTTTAGGGGTTAAGAGTTAGGGTTTATAGTTTATGG
1 TTAGAGGTTAAGGGTTAAGAGTTAGGGTTTATAGTTTATGG
81920507 GGTTTAAGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
42 30 0.83
43 4 0.11
44 2 0.06
ACGTcount: A:0.24, C:0.01, G:0.34, T:0.41
Consensus pattern (42 bp):
TTAGAGGTTAAGGGTTAAGAGTTAGGGTTTATAGTTTATGGC
Found at i:81920795 original size:24 final size:24
Alignment explanation
Indices: 81920739--81920796 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
81920729 TAATATTAGT
* *
81920739 TAATTTTAAAAATTATTATTTAAA
1 TAATTTTAAAAACTATTACTTAAA
** *
81920763 TAAAATTAAATACTATTACTTAAA
1 TAATTTTAAAAACTATTACTTAAA
81920787 TAATTTTAAA
1 TAATTTTAAA
81920797 GTTTTTGGGT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (24 bp):
TAATTTTAAAAACTATTACTTAAA
Found at i:81921059 original size:3 final size:3
Alignment explanation
Indices: 81921051--81921085 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
81921041 CATTTTAGTA
81921051 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
81921086 AAGAGAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:81936511 original size:48 final size:48
Alignment explanation
Indices: 81936451--81936732 Score: 415
Period size: 48 Copynumber: 5.9 Consensus size: 48
81936441 ATACCGAAGC
* *
81936451 CATATCCTAGATATGGTCTTACACGTA-ATCTCATATCGATG-TCGATGT
1 CATATCCCAGATATGGTCTTACAC-AAGATCTCATATCGATGCT-GATGT
*
81936499 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGATGC
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGATGT
* * * *
81936547 CATATCCCAAATATGGTTTTACATAAGATCTCATATTGATGCTGATGT
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGATGT
* * *
81936595 CATACCCCAGGTATGATCTTACACAAGATCTCATATCGATGCTGATGT
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGATGT
* *
81936643 CATATCCCAGATATGGTCTTACACAAGATCTCATATTGATGCTGATGC
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGATGT
*
81936691 CATATCCCAGATATGGTCTTACACATGATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGC
81936733 CATGTCCCAG
Statistics
Matches: 210, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 1 0.00
48 208 0.99
49 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (48 bp):
CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGATGT
Found at i:81936749 original size:42 final size:47
Alignment explanation
Indices: 81936449--81936766 Score: 335
Period size: 48 Copynumber: 6.8 Consensus size: 47
81936439 TCATACCGAA
* * * *
81936449 GCCATATCCTAGATATGGTCTTACACGTAATCTCATATCGATG-TCGAT
1 GCCATATCCCAGATATGGTCTTACACATGATCTCA-ATTGATGCT-GAT
* * *
81936497 GTCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACATGATCTCA-ATTGATGCTGAT
* * * *
81936545 GCCATATCCCAAATATGGTTTTACATAAGATCTCATATTGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACATGATCTCA-ATTGATGCTGAT
* * * * * *
81936593 GTCATACCCCAGGTATGATCTTACACAAGATCTCATATCGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACATGATCTCA-ATTGATGCTGAT
* *
81936641 GTCATATCCCAGATATGGTCTTACACAAGATCTCATATTGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACATGATCTCA-ATTGATGCTGAT
81936689 GCCATATCCCAGATATGGTCTTACACATGATCTC-A-T-AT-C-GAT
1 GCCATATCCCAGATATGGTCTTACACATGATCTCAATTGATGCTGAT
* * *
81936731 GCCATGTCCCAGACATGGTCTTACACAT-ATCACAAT
1 GCCATATCCCAGATATGGTCTTACACATGATCTCAAT
81936767 GCCATAGCCC
Statistics
Matches: 240, Mismatches: 27, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
41 4 0.02
42 30 0.12
43 1 0.00
44 2 0.01
45 1 0.00
46 1 0.00
48 200 0.83
49 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (47 bp):
GCCATATCCCAGATATGGTCTTACACATGATCTCAATTGATGCTGAT
Found at i:81936819 original size:37 final size:37
Alignment explanation
Indices: 81936728--81936865 Score: 142
Period size: 37 Copynumber: 3.8 Consensus size: 37
81936718 ATCTCATATC
*
81936728 GATGCCAT-GTCCCAGAC-ATGGTCTTACA--CATATCAC
1 GATGCCATAG-CCCAG-CTATGGTCTTACATGC-TATCAG
* *
81936764 AATGCCATAGCCCTGCTATGGTCTTACATG-TCATCAG
1 GATGCCATAGCCCAGCTATGGTCTTACATGCT-ATCAG
* * * *
81936801 GATGCCCTAGTCCAGCTATGGTCTTACATGCTATTAT
1 GATGCCATAGCCCAGCTATGGTCTTACATGCTATCAG
81936838 GATGCCATAGCCCAGCTATGGTCTTACA
1 GATGCCATAGCCCAGCTATGGTCTTACA
81936866 CGTACCACAT
Statistics
Matches: 85, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
35 1 0.01
36 23 0.27
37 60 0.71
38 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (37 bp):
GATGCCATAGCCCAGCTATGGTCTTACATGCTATCAG
Found at i:81938851 original size:39 final size:40
Alignment explanation
Indices: 81938647--81938869 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
81938637 TTGAATGCTG
* * * * * *
81938647 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
81938687 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
81938727 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
81938767 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
81938807 TCCGGGTTAAGTCCCGAAGGCGTT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
81938846 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81938870 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.21
40 119 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:81938889 original size:79 final size:80
Alignment explanation
Indices: 81938721--81938904 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
81938711 TGTGCGAGAT
* * *
81938721 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
** *
81938786 GCATTCGTGCGAGTT
66 GCATTCGAACGAGTG
* * * *
81938801 ATTAAATCCGGGTTAAGTCCCGAAGGCGTT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
*
81938865 GCATTTGAACGAG-G
66 GCATTCGAACGAGTG
* *
81938879 AGCTATATCC-GGTTAAATCCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
81938905 TACGTGATTT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
78 16 0.18
79 45 0.51
80 28 0.31
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
GCATTCGAACGAGTG
Found at i:81938889 original size:119 final size:120
Alignment explanation
Indices: 81938647--81938904 Score: 265
Period size: 119 Copynumber: 2.2 Consensus size: 120
81938637 TTGAATGCTG
* * * *
81938647 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCCGTT
* * ** * *
81938712 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAA
* * * **
81938767 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGG-CG
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCCG
* * * * *
81938829 TTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAA
*
81938886 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
81938905 TACGTGATTT
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
118 16 0.14
119 49 0.43
120 43 0.38
121 6 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCCGTT
GTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAA
Found at i:81946690 original size:37 final size:37
Alignment explanation
Indices: 81946640--81946764 Score: 146
Period size: 36 Copynumber: 3.3 Consensus size: 37
81946630 GGACTAAGAT
*
81946640 CCGAAGGCTTTGTGCGAGATACAAATCCGGGTTAAG-C
1 CCGAAGGCTTTGTGCGAG-TACAAATCCGGGTTATGTC
*
81946677 CCGAAGGCTTTGTGCGAGTATAAAT-CGGGTTATGTC
1 CCGAAGGCTTTGTGCGAGTACAAATCCGGGTTATGTC
* * * *
81946713 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCTTTGTGCGAG-TAC-AAATCCGGGTTATGTC
81946752 CCGAAGGCATTTG
1 CCGAAGGC-TTTG
81946765 AACGAGGAGC
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
35 8 0.11
36 23 0.31
37 20 0.27
38 3 0.04
39 18 0.24
40 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.26
Consensus pattern (37 bp):
CCGAAGGCTTTGTGCGAGTACAAATCCGGGTTATGTC
Found at i:81946756 original size:39 final size:38
Alignment explanation
Indices: 81946640--81946762 Score: 137
Period size: 39 Copynumber: 3.3 Consensus size: 38
81946630 GGACTAAGAT
* * *
81946640 CCGAAGGCTTTGTGCGAGATAC-AAATCCGGGTTAAG-C
1 CCGAAGGCATTGTGCGAG-TACTAAAACCGGGTTATGTC
* *
81946677 CCGAAGGCTTTGTGCGAGTA-T-AAATCGGGTTATGTC
1 CCGAAGGCATTGTGCGAGTACTAAAACCGGGTTATGTC
* *
81946713 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAG-TACTAAAACCGGGTTATGTC
81946752 CCGAAGGCATT
1 CCGAAGGCATT
81946763 TGAACGAGGA
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
35 10 0.14
36 19 0.26
37 20 0.27
38 1 0.01
39 24 0.32
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGAAGGCATTGTGCGAGTACTAAAACCGGGTTATGTC
Found at i:81948195 original size:25 final size:25
Alignment explanation
Indices: 81948147--81948238 Score: 91
Period size: 25 Copynumber: 3.7 Consensus size: 25
81948137 TGTTACACAT
*
81948147 GTATACTCATACGAGCTATGAATCG
1 GTATACTCATACGAGCTATAAATCG
* *
81948172 GTATACTC-TCACGAGCTGTAAATCA
1 GTATACTCAT-ACGAGCTATAAATCG
*
81948197 GTA-AGCTCATACGAGCTACAAATCG
1 GTATA-CTCATACGAGCTATAAATCG
*
81948222 GTA-AGCTCATACAAGCT
1 GTATA-CTCATACGAGCT
81948239 GTGGCGTATC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
24 2 0.04
25 54 0.95
26 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (25 bp):
GTATACTCATACGAGCTATAAATCG
Found at i:81949823 original size:9 final size:10
Alignment explanation
Indices: 81949799--81949823 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81949789 TTCCATTTCG
81949799 ATTTTTTAAA
1 ATTTTTTAAA
81949809 ATTTTTTAAA
1 ATTTTTTAAA
81949819 ATTTT
1 ATTTT
81949824 AAAGGTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:81950245 original size:26 final size:26
Alignment explanation
Indices: 81950216--81950265 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
81950206 AAATAATTTC
81950216 AAAA-TTTAAAGAATTAAAATTTTAAA
1 AAAATTTTAAA-AATTAAAATTTTAAA
* *
81950242 AAAATTTTAAAATTTCAAATTTTA
1 AAAATTTTAAAAATTAAAATTTTA
81950266 TCTAATTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (26 bp):
AAAATTTTAAAAATTAAAATTTTAAA
Found at i:81950620 original size:3 final size:3
Alignment explanation
Indices: 81950612--81950646 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
81950602 CATTTTAGTA
81950612 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
81950647 AAGAGAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:81954563 original size:25 final size:25
Alignment explanation
Indices: 81954529--81954579 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
81954519 GTGAAAGGAA
*
81954529 TAAAGTTGGTATTTATTGTTTGCTG
1 TAAAGTTGGTATTTATTATTTGCTG
81954554 TAAAGTTGGTATTTATTATTTGCTG
1 TAAAGTTGGTATTTATTATTTGCTG
81954579 T
1 T
81954580 TTTTGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.22, T:0.53
Consensus pattern (25 bp):
TAAAGTTGGTATTTATTATTTGCTG
Found at i:81955085 original size:10 final size:10
Alignment explanation
Indices: 81955072--81955097 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
81955062 TTTTCATGAC
81955072 TTTTATAATA
1 TTTTATAATA
81955082 TTTTATAATA
1 TTTTATAATA
81955092 TTTTAT
1 TTTTAT
81955098 TTTTTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTATAATA
Found at i:81955254 original size:43 final size:43
Alignment explanation
Indices: 81955113--81955256 Score: 198
Period size: 43 Copynumber: 3.3 Consensus size: 43
81955103 TTTAAAATTT
* *
81955113 ATGACCTTTAGCGGTGTTTTTGGGAAAAGCGTCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC
* * * *
81955156 ATGATCTTCAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC
* * *
81955199 TTGACTTTTAGCGGCGTTTGTGGGGAAAGCGTCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC
*
81955242 ATGACCTATAGCGGC
1 ATGACCTTTAGCGGC
81955257 ATTTTTTAGA
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 85 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (43 bp):
ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC
Found at i:81955275 original size:86 final size:86
Alignment explanation
Indices: 81955114--81955281 Score: 225
Period size: 86 Copynumber: 2.0 Consensus size: 86
81955104 TTAAAATTTA
* * *
81955114 TGACCTTTAGCGGTGTTTTTGGGAAAAGCGTCGCTAAAGGTCATGATCTTCAGCGGCGTTTGTAG
1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGACCTTCAGCGGCGTTTGTAG
81955179 GAAAAGCGCCGCTAAAGGTCT
66 GAAAAGCGCCGCTAAAGGTCT
* * * *
81955200 TGACTTTTAGCGGCGTTTGTGGGGAAAGCGTCGCTAAAGGTCATGACCTAT-AGCGGCATTTTTT
1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGACCT-TCAGCGGC-GTTTGT
81955264 A-GATAAA-CGCCGCTAAAG
64 AGGA-AAAGCGCCGCTAAAG
81955282 TTTGCGGCGT
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
86 63 0.88
87 9 0.12
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (86 bp):
TGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGACCTTCAGCGGCGTTTGTAG
GAAAAGCGCCGCTAAAGGTCT
Found at i:81955278 original size:43 final size:40
Alignment explanation
Indices: 81955136--81955281 Score: 112
Period size: 43 Copynumber: 3.4 Consensus size: 40
81955126 GTGTTTTTGG
* * *
81955136 GAAAAGCGTCGCTAAAGGTCATGATCTTCAGCGGCGTTTGTA
1 GAAAA-CGCCGCTAAAGGTCATGACCTT-AGCGGCTTTTGTA
* * **
81955178 GGAAAAGCGCCGCTAAAGGTCTTGACTTTTAGCGGCGTTTGTGGG
1 -GAAAA-CGCCGCTAAAGGTCATGAC-CTTAGCGGC-TTT-TGTA
* * *
81955223 GAAAGCGTCGCTAAAGGTCATGACCTATAGCGGCATTTTTTA
1 GAAAACGCCGCTAAAGGTCATGACCT-TAGCGGC-TTTTGTA
81955265 GATAAACGCCGCTAAAG
1 GA-AAACGCCGCTAAAG
81955282 TTTGCGGCGT
Statistics
Matches: 81, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
42 4 0.05
43 67 0.83
44 8 0.10
45 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (40 bp):
GAAAACGCCGCTAAAGGTCATGACCTTAGCGGCTTTTGTA
Found at i:81957113 original size:23 final size:23
Alignment explanation
Indices: 81957078--81957122 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
81957068 ATTTCTTCTT
*
81957078 CTTTACTTGTTTTAT-TTTTTTC
1 CTTTACTTCTTTTATCTTTTTTC
*
81957100 CTTTATCTTCTTTTTTCTTTTTT
1 CTTTA-CTTCTTTTATCTTTTTT
81957123 ACTCTTTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 8 0.42
24 6 0.32
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.76
Consensus pattern (23 bp):
CTTTACTTCTTTTATCTTTTTTC
Found at i:81957805 original size:63 final size:62
Alignment explanation
Indices: 81957634--81957818 Score: 210
Period size: 63 Copynumber: 2.9 Consensus size: 62
81957624 GTGATAGCCC
* * * *
81957634 GTGTAACTCACTATTTTGAAGTTAGAGTCACA-TGGGCCAAGGGCACGAGCTTGTGTCCAGGCT
1 GTGTAACTCACTATTTTGAA-TTAGAGTCACACT-GGCCAAGGACACGGGCGTATGTCCAGGCT
* * * * *
81957697 GTGTATCTTACTATTTTGGAATTAGAGTCACACAGGCCAGGGACACGGGCGTATGTCTAGGCT
1 GTGTAACTCACTATTTT-GAATTAGAGTCACACTGGCCAAGGACACGGGCGTATGTCCAGGCT
* * * *
81957760 GTGTAACTCACTATTTTAGAATTAGAGACACACTGGCCAAAGACACGGGAGTGTGTCCA
1 GTGTAACTCACTATTTT-GAATTAGAGTCACACTGGCCAAGGACACGGGCGTATGTCCA
81957819 AGCCATGTGG
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
63 98 0.97
64 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (62 bp):
GTGTAACTCACTATTTTGAATTAGAGTCACACTGGCCAAGGACACGGGCGTATGTCCAGGCT
Found at i:81960510 original size:17 final size:17
Alignment explanation
Indices: 81960490--81960523 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81960480 AGGTTTGGGT
81960490 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
81960507 TTAAAGTTTTTAATTAA
1 TTAAAAATTTTAATTAA
81960524 AAATCTATTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:81968688 original size:95 final size:95
Alignment explanation
Indices: 81968529--81968955 Score: 333
Period size: 95 Copynumber: 4.5 Consensus size: 95
81968519 TCTGAAGTGG
* * * * ** ** *
81968529 TTCTTCTATTAAACTTATCAAACAGTTTCCTCTTTGAGGTGTCAGCTTAAGATTATATTGAATTT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTTTGAAAATATTAAATTT
* * * *
81968594 TGGCTAAGTGCTTTAAGAGGCTAGAAGTGC
66 TGACTAAGTGCCTTAAGAGGCTAGAAGCGA
* * *
81968624 TTCTTTTATTAAACTTAGCAAGTAGTTTTCTCTTTGGGGTGTCTGCTTTTGAAAATATTAAATTT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTTTGAAAATATTAAATTT
* *
81968689 TGCCTAAGTGCCTTAAAAGGCTAGAAGCGA
66 TGACTAAGTGCCTTAAGAGGCTAGAAGCGA
* * ** * * * * * *
81968719 TTATTCTATTAAACTTAGCGAGCAACTTCCTATTTGGGGTGTCT-ATTTTGTAACTTTGTAAAAT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTTTGAAAATAT-TAAATT
*
81968783 TTAACTAAGTGCCTTAAGAGGCTAGAAGCGA
65 TTGACTAAGTGCCTTAAGAGGCTAGAAGCGA
* * * * ** * ** * *
81968814 TTCTTTTATTGAACTTAGCGAGCAATTTCCTC-TTAAGGTGTCTACTTTAT-AACTTTGTTCAAT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTT-TGAA-AATATTAAAT
* * * *
81968877 TTAG-CCAAGTACCTTAAAAGGCTAGAAGCGA
64 TTTGACTAAGTGCCTTAAGAGGCTAGAAGCGA
* *** * * *
81968908 TTCTTCTAGTAAACTTAATGAGCAATTTCCTC-TCGAGGTGTCTGCTTT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTT
81968956 ATAACTTTGT
Statistics
Matches: 268, Mismatches: 60, Indels: 9
0.80 0.18 0.03
Matches are distributed among these distances:
94 82 0.31
95 183 0.68
96 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (95 bp):
TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTTTGAAAATATTAAATTT
TGACTAAGTGCCTTAAGAGGCTAGAAGCGA
Found at i:81968899 original size:94 final size:94
Alignment explanation
Indices: 81968599--81968967 Score: 366
Period size: 95 Copynumber: 3.9 Consensus size: 94
81968589 AATTTTGGCT
* * * * * * * * * *
81968599 AAGTGCTTTAAGAGGCTAGAAGTGCTTCTTTTATTAAACTTAGCAAGTAGTTTTCTCTTTGGGGT
1 AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCTC-TTGAGGT
* * * *
81968664 GTCTGCTTT-TGAAAATAT-T-AAATTTTGCC
65 GTCTACTTTAT--AACTTTGTAAAATTTAGCC
* * * *
81968693 TAAGTGCCTTAAAAGGCTAGAAGCGATTATTCTATTAAACTTAGCGAGCAACTTCCTATTTGGGG
1 -AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCT-CTTGAGG
* * * *
81968758 TGTCTATTTTGTAACTTTGTAAAATTTAACT
64 TGTCTACTTTATAACTTTGTAAAATTTAGCC
* * * *
81968789 AAGTGCCTTAAGAGGCTAGAAGCGATTCTTTTATTGAACTTAGCGAGCAATTTCCTCTTAAGGTG
1 AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCTCTTGAGGTG
**
81968854 TCTACTTTATAACTTTGTTCAATTTAGCC
66 TCTACTTTATAACTTTGTAAAATTTAGCC
* * ** *
81968883 AAGTACCTTAAAAGGCTAGAAGCGATTCTTCTAGTAAACTTAATGAGCAATTTCCTCTCGAGGTG
1 AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCTCTTGAGGTG
*
81968948 TCTGCTTTATAACTTTGTAA
66 TCTACTTTATAACTTTGTAA
81968968 GCCTAAAAAG
Statistics
Matches: 225, Mismatches: 45, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
94 106 0.47
95 111 0.49
96 8 0.04
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (94 bp):
AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCTCTTGAGGTG
TCTACTTTATAACTTTGTAAAATTTAGCC
Found at i:81969008 original size:20 final size:20
Alignment explanation
Indices: 81968967--81969013 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
81968957 TAACTTTGTA
* *
81968967 AGCCTAAAAAGGCGATGTTG
1 AGCCTAAAAAGGCAATGGTG
*
81968987 AGCCTGAAAAGGCAATGGTG
1 AGCCTAAAAAGGCAATGGTG
*
81969007 AGTCTAA
1 AGCCTAA
81969014 CAAATGTTAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.30, T:0.19
Consensus pattern (20 bp):
AGCCTAAAAAGGCAATGGTG
Found at i:81971538 original size:22 final size:24
Alignment explanation
Indices: 81971501--81971546 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
81971491 AATTGGTTTT
81971501 GATAGATGTTATTTGAAATATTTA
1 GATAGATGTTATTTGAAATATTTA
*
81971525 GATA-ATGTT-TTTGAAGTATTTA
1 GATAGATGTTATTTGAAATATTTA
81971547 TAGGGGTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 5 0.24
24 4 0.19
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (24 bp):
GATAGATGTTATTTGAAATATTTA
Found at i:81973681 original size:21 final size:20
Alignment explanation
Indices: 81973657--81973695 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81973647 GTGTAAATGT
81973657 GGTAACATAATTGTTATTTTA
1 GGTAACATAA-TGTTATTTTA
**
81973678 GGTAATTTAATGTTATTT
1 GGTAACATAATGTTATTT
81973696 ATATGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (20 bp):
GGTAACATAATGTTATTTTA
Found at i:81976013 original size:10 final size:10
Alignment explanation
Indices: 81975995--81976028 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
81975985 TTACCCATTA
81975995 CAAAACATGC
1 CAAAACATGC
* *
81976005 CAAATCATGT
1 CAAAACATGC
81976015 CAAAACATGC
1 CAAAACATGC
81976025 CAAA
1 CAAA
81976029 TACCATTCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.50, C:0.26, G:0.09, T:0.15
Consensus pattern (10 bp):
CAAAACATGC
Found at i:81978112 original size:20 final size:21
Alignment explanation
Indices: 81978087--81978133 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
81978077 AATATTTTAT
* *
81978087 TATATTATGATT-TTGTAACA
1 TATATTAAGATTATTATAACA
81978107 TATATTAAGATTAATTATAACA
1 TATATTAAGATT-ATTATAACA
81978129 TATAT
1 TATAT
81978134 AACATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 11 0.48
22 12 0.52
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (21 bp):
TATATTAAGATTATTATAACA
Found at i:81979128 original size:26 final size:26
Alignment explanation
Indices: 81979092--81979145 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
81979082 GAGAAAGGGG
81979092 AGTAAGAATTTCTGAAATCTCTAGGA
1 AGTAAGAATTTCTGAAATCTCTAGGA
81979118 AGTAAGAATTTCTGAAATCTCTAGGA
1 AGTAAGAATTTCTGAAATCTCTAGGA
81979144 AG
1 AG
81979146 CTTCTGAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (26 bp):
AGTAAGAATTTCTGAAATCTCTAGGA
Found at i:81985555 original size:42 final size:42
Alignment explanation
Indices: 81985509--81985663 Score: 177
Period size: 42 Copynumber: 3.7 Consensus size: 42
81985499 CTAAGACTAT
* *
81985509 GTGTAAGACCATATCTGAGATATGGCATCTATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
* * *
81985551 GTGTAAGACCATATTTGCGATATGGCATCGATATAAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
* * * * *
81985593 GTGTAAGACTATAGCTGGGCTATTGGCATCGATACGAGA-TCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACTTC
* *
81985635 TATGTAAGACCATATCTGGGATATAGCAT
1 -GTGTAAGACCATATCTGGGATATGGCAT
81985664 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 62 0.66
43 32 0.34
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
Found at i:81991426 original size:18 final size:18
Alignment explanation
Indices: 81991403--81991448 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
81991393 TGTGGATATA
81991403 GACCGTGTGGTCACACAC
1 GACCGTGTGGTCACACAC
*
81991421 GACCGTGTGGTCACACAT
1 GACCGTGTGGTCACACAC
*
81991439 GCCCGTGTGG
1 GACCGTGTGG
81991449 CTTGGGACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (18 bp):
GACCGTGTGGTCACACAC
Found at i:81993686 original size:36 final size:36
Alignment explanation
Indices: 81993639--81993708 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
81993629 AGAAGATGAA
81993639 GAAAAGATGATATCTTTCTTTTCTTGATTTTATTAC
1 GAAAAGATGATATCTTTCTTTTCTTGATTTTATTAC
*
81993675 GAAAAGATGATATCTTTCTTTTCTTTATTTTATT
1 GAAAAGATGATATCTTTCTTTTCTTGATTTTATT
81993709 CTATTTTTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (36 bp):
GAAAAGATGATATCTTTCTTTTCTTGATTTTATTAC
Found at i:81996118 original size:44 final size:44
Alignment explanation
Indices: 81996018--81996129 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 44
81996008 GTCGATACCG
* * * *
81996018 TGTCCCAGACAGGTCTTACACTAACACATGTAACCGTGCCGATGTA
1 TGTCCCAGACATGTCTTACACTAACACATCT-A-CGTGCCGACGCA
*
81996064 TGTCCCAGACATGTCTTACACTAGCACATCT-CGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAACACATCTACGT-GCCGACGCA
*
81996108 TGTCCCAGACATGTCTGACACT
1 TGTCCCAGACATGTCTTACACT
81996130 GGATAACATC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
43 3 0.05
44 28 0.47
46 28 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAACACATCTACGTGCCGACGCA
Found at i:81996156 original size:46 final size:45
Alignment explanation
Indices: 81996055--81996318 Score: 212
Period size: 46 Copynumber: 5.8 Consensus size: 45
81996045 ATGTAACCGT
* * * *
81996055 GCCGATGTATGTCCCAGACATGTCTTACACTAG--CACATCTCGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-TTG-AG
* * * **
81996099 GCCGACGCATGTCCCAGACATGTCTGACACTGGATAACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-TTGAG
* * *
81996145 GCCGATGCATGTCCCA-AGCAAGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCATGTCCCAGA-CATGTCTTACACTGGCTCTCAT-TTGAG
** * * * * * *
81996191 GTTGATGCATGTCCCAGACATATCTTACACTAGCCCTCGTTTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTT-GAG
* *
81996237 GCCGATGTCATGTCCCATACATGGTCTTACACTGGCTCTCATTATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATT-TGAG
*
81996285 GCCGATGCATGTCCCAGACATGTCTAACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
81996319 ATACATATCT
Statistics
Matches: 173, Mismatches: 38, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
44 29 0.17
45 3 0.02
46 90 0.52
47 27 0.16
48 23 0.13
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTTGAG
Found at i:81996292 original size:94 final size:92
Alignment explanation
Indices: 81996145--81996315 Score: 254
Period size: 94 Copynumber: 1.8 Consensus size: 92
81996135 ACATCTTGAG
**
81996145 GCCGATGCATGTCCCAAGCAAGTCTTACACTGGCTCTCATAATGTGGTTGATGCATGTCCCAGAC
1 GCCGATGCATGTCCCAAGCAAGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
*
81996210 ATATCTTACACTAGCCCTCGTTTCAAT
66 ATATCTAACACTAGCCCTCGTTTCAAT
* *
81996237 GCCGATGTCATGTCCCATA-CATGGTCTTACACTGGCTCTCATTATGTGGCCGATGCATGTCCCA
1 GCCGATG-CATGTCCCA-AGCA-AGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCA
*
81996301 GACATGTCTAACACT
63 GACATATCTAACACT
81996316 GGCATACATA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
92 7 0.10
93 11 0.16
94 52 0.74
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
GCCGATGCATGTCCCAAGCAAGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
ATATCTAACACTAGCCCTCGTTTCAAT
Found at i:81999956 original size:31 final size:28
Alignment explanation
Indices: 81999893--81999957 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
81999883 ATGATAACGT
* * *
81999893 AAGTGATTAAAATGTAATATTTAAACAT
1 AAGTGATTAAAATATAATATGTAAACAA
81999921 AAGTGATTAAAATATAACTTATGGTAAACAA
1 AAGTGATTAAAATATAA--TAT-GTAAACAA
81999952 AAGTGA
1 AAGTGA
81999958 CCATGAGTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 16 0.52
30 3 0.10
31 12 0.39
ACGTcount: A:0.51, C:0.05, G:0.14, T:0.31
Consensus pattern (28 bp):
AAGTGATTAAAATATAATATGTAAACAA
Found at i:82000671 original size:14 final size:15
Alignment explanation
Indices: 82000654--82000693 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
82000644 AACGTTAGTC
82000654 ATTAAAATATGA-AA
1 ATTAAAATATGATAA
82000668 ATTAAAA-ATGATTAA
1 ATTAAAATATGA-TAA
82000683 ATTAAAATATG
1 ATTAAAATATG
82000694 TAATGGCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.17
14 7 0.30
15 9 0.39
16 3 0.13
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (15 bp):
ATTAAAATATGATAA
Found at i:82002479 original size:3 final size:3
Alignment explanation
Indices: 82002471--82002520 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
82002461 TACCAAACCC
82002471 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
82002519 AT
1 AT
82002521 TCAGTTGGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:82003472 original size:27 final size:27
Alignment explanation
Indices: 82003406--82003464 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
82003396 AGTTGTCTCC
* *
82003406 AGTGTCAAAGTGTGAGATGTTCTGCGA
1 AGTGTCAAAGTGTGAAATGTTCTGCAA
82003433 AGTGTCAAAGTGTGAAATGCTT-TGCAA
1 AGTGTCAAAGTGTGAAATG-TTCTGCAA
82003460 AGTGT
1 AGTGT
82003465 TGAAGTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.31
Consensus pattern (27 bp):
AGTGTCAAAGTGTGAAATGTTCTGCAA
Found at i:82005140 original size:45 final size:44
Alignment explanation
Indices: 82005069--82005184 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 44
82005059 TATACATTTA
* * * **
82005069 AAAATGAGTAAGAAAATAGCTAAAAGATTCTATGACATCATGGT
1 AAAATGAGTAAGACAATAGTTGAAAGACACTATGACATCATGGT
*
82005113 ATAAATGAGTAAGACCATAGTTGAAAGACACTATGACATCATGGT
1 A-AAATGAGTAAGACAATAGTTGAAAGACACTATGACATCATGGT
* * * *
82005158 AAACAAGATTGAGACTATAGTTGAAAG
1 AAA-ATGAGTAAGACAATAGTTGAAAG
82005185 GCGTTATGGC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 3 0.05
45 57 0.95
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (44 bp):
AAAATGAGTAAGACAATAGTTGAAAGACACTATGACATCATGGT
Found at i:82007658 original size:38 final size:37
Alignment explanation
Indices: 82007616--82007760 Score: 121
Period size: 38 Copynumber: 3.6 Consensus size: 37
82007606 TAACCGTGGC
*
82007616 ATATCCACTTAGCACCACATTACATGTTTAATCGTGTT
1 ATATCCACTTAGCACCACATTACATGTTTAAACGTG-T
* *
82007654 ATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACTGTGGC
1 ATATCCACTTAGCACCACATTACATG--T---T-TA---AAC-GT-GT
* *
82007701 ATATCCACTTAGCACCACGTTACATGTTTAACCGTAGT
1 ATATCCACTTAGCACCACATTACATGTTTAAACGT-GT
82007739 ATATCCACTTAGCACCACATTA
1 ATATCCACTTAGCACCACATTA
82007761 ATGAATCAAT
Statistics
Matches: 88, Mismatches: 7, Indels: 24
0.74 0.06 0.20
Matches are distributed among these distances:
37 3 0.03
38 45 0.51
39 3 0.03
42 3 0.03
43 3 0.03
46 3 0.03
47 24 0.27
48 4 0.05
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.32
Consensus pattern (37 bp):
ATATCCACTTAGCACCACATTACATGTTTAAACGTGT
Found at i:82007703 original size:85 final size:84
Alignment explanation
Indices: 82007606--82007844 Score: 388
Period size: 85 Copynumber: 2.8 Consensus size: 84
82007596 TTAACATGTA
* *
82007606 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAATCGTGTTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTG-TATATCCACTTAGCACCA
82007671 CGTTAATGAATCAATATATG
65 CGTTAATGAATCAATATATG
*
82007691 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTAGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGT-GTATATCCACTTAGCACCA
*
82007756 CATTAATGAATCAATATATG
65 CGTTAATGAATCAATATATG
* * *
82007776 TAACCGTGGCATATCCACTTAGCACCACGTTACACGTATAACCGTGGTATATTCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGT-GTATATCCACTTAGCACCA
82007841 CGTT
65 CGTT
82007845 TTTTCATTCC
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
85 142 0.99
86 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (84 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGTATATCCACTTAGCACCAC
GTTAATGAATCAATATATG
Found at i:82015412 original size:46 final size:46
Alignment explanation
Indices: 82015345--82015435 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
82015335 ATGGAGTGAA
82015345 AGTAAAAAAAAGAAAAAGAAAAACGAGAGATAGTGGAAATAAGAAT
1 AGTAAAAAAAAGAAAAAGAAAAACGAGAGATAGTGGAAATAAGAAT
82015391 AGTAAAAAAAAGAAAAAGAAAAACGAGAGATAGTGGAAATAAGAA
1 AGTAAAAAAAAGAAAAAGAAAAACGAGAGATAGTGGAAATAAGAA
82015436 GTATTCACCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.66, C:0.02, G:0.22, T:0.10
Consensus pattern (46 bp):
AGTAAAAAAAAGAAAAAGAAAAACGAGAGATAGTGGAAATAAGAAT
Found at i:82022876 original size:40 final size:40
Alignment explanation
Indices: 82022839--82023020 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 40
82022829 GCTACTCGTT
*
82022839 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
82022879 CAAATGCCTTCAGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
82022919 CCAATACCTTCGGG-CTTAGCCTGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
82022958 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
82022999 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
82023021 AGATATCATT
Statistics
Matches: 116, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 71 0.61
41 14 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:82023008 original size:79 final size:80
Alignment explanation
Indices: 82022845--82023019 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
82022835 CGTTCAAATG
* * * *
82022845 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGATTTA
1 CCTTCGGGACTTAGCCTGGAAT-TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGATATA
*
82022909 GTAACTCGCACCAATA
65 GTAACTAGCACCAATA
** *
82022925 CCTTCGGG-CTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATG
1 CCTTCGGGACTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCCGGATATA
*
82022988 GTCACTTAGCA-CAA-A
65 GTAAC-TAGCACCAATA
82023003 GCCTTCGGGACTTAGCC
1 -CCTTCGGGACTTAGCC
82023020 CAGATATCAT
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
78 4 0.05
79 57 0.70
80 20 0.25
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGATATAG
TAACTAGCACCAATA
Found at i:82031291 original size:33 final size:33
Alignment explanation
Indices: 82031249--82031313 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
82031239 GGAAAAGCAA
82031249 TGTTAGTGGACTAAGCCGAAATAGTCGCCATAG
1 TGTTAGTGGACTAAGCCGAAATAGTCGCCATAG
82031282 TGTTAGTGGACTAAGCCGAAATAGTCGCCATA
1 TGTTAGTGGACTAAGCCGAAATAGTCGCCATA
82031314 TTTTGAACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (33 bp):
TGTTAGTGGACTAAGCCGAAATAGTCGCCATAG
Found at i:82031628 original size:46 final size:45
Alignment explanation
Indices: 82031501--82031671 Score: 132
Period size: 46 Copynumber: 3.6 Consensus size: 45
82031491 GGGTCATTTG
*
82031501 TGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
1 TGTGTTAGTGTAAGACCATGTCTGGGACA-GGCATCAGCATTGAGA
* * * * * *
82031547 TGAGAGCTAGTGCAAGA-CATGTCTGGGATATGCATCATC-TATGAGA
1 T--GTGTTAGTGTAAGACCATGTCTGGGACAGGCATCAGCAT-TGAGA
* * *
82031593 TGTGTTAGTGTAAGACCATGTATGGGACACGGCATCAGTA-TGAATA
1 TGTGTTAGTGTAAGACCATGTCTGGGACA-GGCATCAGCATTG-AGA
*
82031639 TGTGAGAGCTAGTGTAAGACCATGTCTGGGACA
1 TGT----GTTAGTGTAAGACCATGTCTGGGACA
82031672 TGGTGCCGGC
Statistics
Matches: 96, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
44 11 0.11
45 14 0.15
46 24 0.25
47 12 0.12
48 11 0.11
50 24 0.25
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (45 bp):
TGTGTTAGTGTAAGACCATGTCTGGGACAGGCATCAGCATTGAGA
Found at i:82031771 original size:47 final size:47
Alignment explanation
Indices: 82031506--82031777 Score: 195
Period size: 47 Copynumber: 5.7 Consensus size: 47
82031496 ATTTGTGTGT
* *
82031506 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA-GAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATA-GATGAGC
* * * *
82031554 TAGTGCAAGA-CATGTCTGGGATAT-GCATC-A-TCT-ATGAGATGTGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAT-AGATGAGC
* * *
82031598 TAGTGTAAGACCATGTATGGGACACGGCATC-AGTATGAATATG-TGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TG-ATA-GAT--GAGC
*** * * *
82031648 TAGTGTAAGACCATGTCTGGGACATGGTGCCGGCCTCGATTTTGAT-AG-
1 TAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA--TAGATGAGC
*
82031696 TCAGTATAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGC
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGC
* *
82031744 CAGTGTAAGACCATGTCTGAGACATGGCATCGAC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGAC
82031778 ATTATACCCT
Statistics
Matches: 173, Mismatches: 32, Indels: 39
0.71 0.13 0.16
Matches are distributed among these distances:
43 4 0.02
44 13 0.08
45 11 0.06
46 15 0.09
47 48 0.28
48 17 0.10
49 31 0.18
50 29 0.17
51 2 0.01
52 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (47 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGC
Found at i:82032958 original size:21 final size:20
Alignment explanation
Indices: 82032934--82032973 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
82032924 GTTATAATGA
82032934 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTG-TGCCCTT
* *
82032955 CCACATGGGCGTGTGCCCT
1 CCACACGAGCGTGTGCCCT
82032974 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (20 bp):
CCACACGAGCGTGTGCCCTT
Found at i:82038996 original size:43 final size:43
Alignment explanation
Indices: 82038843--82038997 Score: 147
Period size: 43 Copynumber: 3.6 Consensus size: 43
82038833 TGTTTTCGAA
*
82038843 TAAGACCACGTTTGGGACGTTGGCATCAAT-TTATGAATTACATG
1 TAAGACCACGTCTGGGACGTTGGCATCAATATT-TG-ATTACATG
* * * * * ***
82038887 TAAGACCATGTCTGGGACATCGACATC-GTATTTGATTTTGTG
1 TAAGACCACGTCTGGGACGTTGGCATCAATATTTGATTACATG
* *
82038929 TAAAACC-CTGTCTAGGATCG-TGGCATCAATATTTGATTACATG
1 TAAGACCAC-GTCTGGGA-CGTTGGCATCAATATTTGATTACATG
82038972 TAAGACCACGTCTGGGACGTTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
82038998 TGTATGAGCT
Statistics
Matches: 84, Mismatches: 21, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
42 25 0.30
43 34 0.40
44 25 0.30
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACGTTGGCATCAATATTTGATTACATG
Found at i:82042525 original size:25 final size:25
Alignment explanation
Indices: 82042466--82042526 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
82042456 GTACATGTAG
82042466 GCTCATACGAG-CAATAAACGGTAA
1 GCTCATACGAGCCAATAAACGGTAA
* *
82042490 GCTTC-TCCGAGCCGAAT-ATCGGTAA
1 GC-TCATACGAGCC-AATAAACGGTAA
82042515 GCTCATACGAGC
1 GCTCATACGAGC
82042527 TATGGTGAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
24 9 0.30
25 18 0.60
26 3 0.10
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (25 bp):
GCTCATACGAGCCAATAAACGGTAA
Found at i:82043998 original size:22 final size:22
Alignment explanation
Indices: 82043968--82044019 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
82043958 GATCAGTGTT
* *
82043968 ATCAATGGCAATTTATCTGCAA
1 ATCAGTGGCAATATATCTGCAA
82043990 ATCAGTGGCAATATATCTGCAA
1 ATCAGTGGCAATATATCTGCAA
82044012 ATCAGTGG
1 ATCAGTGG
82044020 TGGCTTGTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (22 bp):
ATCAGTGGCAATATATCTGCAA
Found at i:82044230 original size:22 final size:22
Alignment explanation
Indices: 82044187--82044231 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
82044177 ATCATGATGA
*
82044187 TTGATATGATGAGATTGCTATT
1 TTGATATGATGAGATTGATATT
*
82044209 TTGATATGTATGTGATT-ATATT
1 TTGATATG-ATGAGATTGATATT
82044231 T
1 T
82044232 GTGTTGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (22 bp):
TTGATATGATGAGATTGATATT
Found at i:82047330 original size:16 final size:16
Alignment explanation
Indices: 82047309--82047359 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
82047299 GTATTTATCA
* * *
82047309 TTTTCACAATCTAGAT
1 TTTTCACAGTCTACAG
82047325 TTTTCACAGTCTACAG
1 TTTTCACAGTCTACAG
*
82047341 TTTTCACAGTCTATAG
1 TTTTCACAGTCTACAG
82047357 TTT
1 TTT
82047360 CAAATCTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45
Consensus pattern (16 bp):
TTTTCACAGTCTACAG
Found at i:82048405 original size:49 final size:48
Alignment explanation
Indices: 82048270--82048406 Score: 188
Period size: 47 Copynumber: 2.8 Consensus size: 48
82048260 CAGAACACCA
*
82048270 TTTGTGGACAAGCCACCACTAATTTGCAGATAAACTGCCACTAGTAAAC
1 TTTGTGGACAAGCCACCACT-ATTTGCAGATAAACTGCCACTAGGAAAC
* * *
82048319 TTTGTGGACAATCCACCAC-ATATGCAGATATACTGCCACT-GGAACAC
1 TTTGTGGACAAGCCACCACTATTTGCAGATAAACTGCCACTAGGAA-AC
*
82048366 TTTGTGGACAAGCCATCACTGATTTGCAGATAAACTGCCAC
1 TTTGTGGACAAGCCACCACT-ATTTGCAGATAAACTGCCAC
82048407 ATACTTCCCA
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
46 3 0.04
47 38 0.49
49 36 0.47
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (48 bp):
TTTGTGGACAAGCCACCACTATTTGCAGATAAACTGCCACTAGGAAAC
Found at i:82051025 original size:21 final size:22
Alignment explanation
Indices: 82051000--82051048 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
82050990 TAGTAGATAT
82051000 AATATTTA-TAAAATAAAATAA
1 AATATTTATTAAAATAAAATAA
* *
82051021 AATA-TTATTTAAATAATATAA
1 AATATTTATTAAAATAAAATAA
82051042 AAT-TTTA
1 AATATTTA
82051049 AAAGGATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AATATTTATTAAAATAAAATAA
Found at i:82052664 original size:29 final size:31
Alignment explanation
Indices: 82052632--82052689 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
82052622 TCATGTGTAT
82052632 AATTGCAT-CT-AATCAAAATTCATATATCA
1 AATTGCATACTGAATCAAAATTCATATATCA
* *
82052661 AATTGCATATTGAATCAAAGTTCATATAT
1 AATTGCATACTGAATCAAAATTCATATAT
82052690 AATTTTAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 8 0.32
30 1 0.04
31 16 0.64
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (31 bp):
AATTGCATACTGAATCAAAATTCATATATCA
Found at i:82052693 original size:29 final size:27
Alignment explanation
Indices: 82052629--82052693 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 27
82052619 TTTTCATGTG
82052629 TATAATTGCATCTAATCAAAATTCATA
1 TATAATTGCATCTAATCAAAATTCATA
* *
82052656 TATCAAATTGCATATTGAATCAAAGTTCATA
1 TAT--AATTGCAT-CT-AATCAAAATTCATA
82052687 TATAATT
1 TATAATT
82052694 TTAAGATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 3 0.09
29 12 0.38
30 1 0.03
31 16 0.50
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.38
Consensus pattern (27 bp):
TATAATTGCATCTAATCAAAATTCATA
Found at i:82056004 original size:93 final size:93
Alignment explanation
Indices: 82055892--82056064 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
82055882 CGCCCATAAG
* *
82055892 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
82055957 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
82055985 TGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
82056050 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
82056065 CAAATATCCC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:82056060 original size:46 final size:46
Alignment explanation
Indices: 82055885--82056060 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 46
82055875 TGTAACCCGC
* *
82055885 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
82055931 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** *
82055977 ACATCTCTTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
82056024 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82056061 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 74 0.67
47 36 0.33
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:82067295 original size:21 final size:20
Alignment explanation
Indices: 82067258--82067296 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
82067248 TCAAAATTTG
82067258 AAAATATCAAAAATATTATA
1 AAAATATCAAAAATATTATA
* *
82067278 AAAACTATTAAAACTATTA
1 AAAA-TATCAAAAATATTA
82067297 AATTAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAATATCAAAAATATTATA
Found at i:82067472 original size:17 final size:18
Alignment explanation
Indices: 82067427--82067482 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
82067417 AAACAAATTT
*
82067427 AAATGATAAAATTATTAA
1 AAATAATAAAATTATTAA
82067445 AAATAATAAAATT-TTATA
1 AAATAATAAAATTATTA-A
*
82067463 AAAT-ATAAAA-AATTAA
1 AAATAATAAAATTATTAA
82067479 AAAT
1 AAAT
82067483 TTATAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 5 0.15
17 12 0.35
18 17 0.50
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
AAATAATAAAATTATTAA
Found at i:82068210 original size:32 final size:32
Alignment explanation
Indices: 82068174--82068239 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
82068164 GGGACAAAAC
82068174 TTTGATTAAGGGAAAAAGAGTACAACGCGTAT
1 TTTGATTAAGGGAAAAAGAGTACAACGCGTAT
82068206 TTTGATTAAGGGAAAAAGAGTACAACGCGTAT
1 TTTGATTAAGGGAAAAAGAGTACAACGCGTAT
82068238 TT
1 TT
82068240 ACTCCCCCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.27
Consensus pattern (32 bp):
TTTGATTAAGGGAAAAAGAGTACAACGCGTAT
Found at i:82070603 original size:46 final size:46
Alignment explanation
Indices: 82070536--82070655 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
82070526 TATGTGTACT
* * *
82070536 AGTGTAAGGCATGTCTGGGACATGCATCAGC-TACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATACA-GACGAGAGCC
* * ** *
82070582 AGTGTAAGACATGTTTGGGACATGCATTAGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATACAGACGAGAGCC
82070628 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
82070656 GGCCTCGAGA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 61 0.97
47 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATACAGACGAGAGCC
Found at i:82070781 original size:49 final size:48
Alignment explanation
Indices: 82070719--82070891 Score: 179
Period size: 49 Copynumber: 3.6 Consensus size: 48
82070709 TGTTGTGTGT
* * *
82070719 CAGTGCAAGACCTGTCTGGGACATGGCATCAACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGC
* * * * *
82070768 CAGTGTAAGACCTGTCTGGGACAAGACATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAAAGC
* ** **
82070817 CAGTGTAAGACCTATCTGGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGC
82070864 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
82070892 GTCAGCATCT
Statistics
Matches: 102, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
47 16 0.16
48 15 0.15
49 71 0.70
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAAGC
Found at i:82070839 original size:142 final size:145
Alignment explanation
Indices: 82070621--82070891 Score: 376
Period size: 142 Copynumber: 1.9 Consensus size: 145
82070611 GCATTGAGAC
* *
82070621 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAAAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGTAAAAC
* * *
82070686 CTATCTGGGACATGGCGTC-AGC-TTGTTGTG-T-GTCAGTGCAAGACC-TGTCTGGGACATGGC
66 CTATCTGGGACATGGCATCGA-CTTTGATGTGCTAGCCAGTGCAAGACCATGTCTGGGACATGGC
82070746 ATCAACACCGATAGAT
130 ATCAACACCGATAGAT
* *
82070762 GAGAGCCAGTGTAAGACCTGTCTGGGACAAGACATCGGCCTCGATATATGA-AAG-TCAGTGTAA
1 GAGAGCCAGTGTAAGACATGTCTGGGACAAG-CATCGGCCTCGAGATAT-ACAAGCT-AGTGTAA
* *
82070825 GACCTATCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCATGTCTGGGACATG
63 AACCTATCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGCAAGACCATGTCTGGGACATG
82070890 GC
128 GC
82070892 GTCAGCATCT
Statistics
Matches: 113, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
141 29 0.26
142 47 0.42
143 9 0.08
144 1 0.01
145 12 0.11
146 15 0.13
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (145 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGTAAAAC
CTATCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGCAAGACCATGTCTGGGACATGGCA
TCAACACCGATAGAT
Found at i:82075719 original size:16 final size:16
Alignment explanation
Indices: 82075698--82075735 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
82075688 GACTATATGA
82075698 CCATCTAAAAGAATTT
1 CCATCTAAAAGAATTT
82075714 CCATCTAAAAGAATTT
1 CCATCTAAAAGAATTT
*
82075730 TCATCT
1 CCATCT
82075736 TTGGAACTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.34
Consensus pattern (16 bp):
CCATCTAAAAGAATTT
Found at i:82079557 original size:22 final size:22
Alignment explanation
Indices: 82079527--82079593 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 22
82079517 ATAGTAATTT
*
82079527 TTTAATTTTAA-AGTTTTCTTAA
1 TTTAATTTTAATAATTTTC-TAA
*
82079549 TTTATTTTTAATAATTTTCTAA
1 TTTAATTTTAATAATTTTCTAA
82079571 TTTAACATTTTAATAAATTTTCT
1 TTT-A-ATTTTAAT-AATTTTCT
82079594 TTAATTGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
22 16 0.42
23 7 0.18
24 7 0.18
25 8 0.21
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (22 bp):
TTTAATTTTAATAATTTTCTAA
Found at i:82079778 original size:30 final size:30
Alignment explanation
Indices: 82079738--82079801 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
82079728 TAAAAGAAGT
* * *
82079738 CCTCTTAAAATAATTAAAAATTATTTAAGC
1 CCTCGTAAAATAATTAAAAATCAATTAAGC
*
82079768 CCTCGTAAAATAATTAAGAATCAATTAAGC
1 CCTCGTAAAATAATTAAAAATCAATTAAGC
82079798 CCTC
1 CCTC
82079802 TACATTATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (30 bp):
CCTCGTAAAATAATTAAAAATCAATTAAGC
Found at i:82084700 original size:20 final size:20
Alignment explanation
Indices: 82084675--82084761 Score: 158
Period size: 20 Copynumber: 4.3 Consensus size: 20
82084665 ATTTTGATAT
82084675 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
82084695 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
82084715 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
82084735 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
82084755 ACATGAT
1 ACATGAT
82084762 GTATTCATAA
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
20 64 0.97
21 2 0.03
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:82084702 original size:11 final size:11
Alignment explanation
Indices: 82084686--82084761 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 11
82084676 CATGATTGAT
82084686 ATGATATGCAC
1 ATGATATGCAC
*
82084697 ATGATATG--T
1 ATGATATGCAC
82084706 ATGATATGCAC
1 ATGATATGCAC
*
82084717 ATGATATG--T
1 ATGATATGCAC
82084726 ATGATATGCAC
1 ATGATATGCAC
*
82084737 ATGATATG--T
1 ATGATATGCAC
82084746 ATGATATGCAC
1 ATGATATGCAC
82084757 ATGAT
1 ATGAT
82084762 GTATTCATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.45
11 29 0.55
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:82084709 original size:9 final size:9
Alignment explanation
Indices: 82084697--82084753 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
82084687 TGATATGCAC
82084697 ATGATATGT
1 ATGATATGT
*
82084706 ATGATATGCAC
1 ATGATATG--T
82084717 ATGATATGT
1 ATGATATGT
*
82084726 ATGATATGCAC
1 ATGATATG--T
82084737 ATGATATGT
1 ATGATATGT
82084746 ATGATATG
1 ATGATATG
82084754 CACATGATGT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:82092810 original size:20 final size:20
Alignment explanation
Indices: 82092785--82092897 Score: 192
Period size: 20 Copynumber: 5.7 Consensus size: 20
82092775 ATTTTGATAT
82092785 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
82092805 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
82092825 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
82092845 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
82092865 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
82092885 ACATGATATGTAT
1 ACATGATATGTAT
82092898 TCATAAATGC
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
20 86 0.98
21 2 0.02
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:82092972 original size:26 final size:26
Alignment explanation
Indices: 82092943--82093015 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
82092933 GAGGAAGTGC
82092943 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
82092969 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
82092995 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
82093016 ATTAAAAGAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:82097361 original size:23 final size:23
Alignment explanation
Indices: 82097335--82097379 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
82097325 TACAATCAAC
82097335 ATTACACATATC-AACAAGCCACA
1 ATTACACAT-TCAAACAAGCCACA
*
82097358 ATTAGACATTCAAAACAAGCCA
1 ATTACACATTC-AAACAAGCCA
82097380 AAATAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.27, G:0.07, T:0.18
Consensus pattern (23 bp):
ATTACACATTCAAACAAGCCACA
Found at i:82098646 original size:103 final size:101
Alignment explanation
Indices: 82098458--82098704 Score: 377
Period size: 103 Copynumber: 2.4 Consensus size: 101
82098448 AATTCGTTAT
* * *
82098458 TTACATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGGT
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCAAACTATGGT
82098523 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
66 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
** * * *
82098559 TTACACGTTCATAGTGCCATAACTAAGTTATGGTTTTATCATTAGAATGCCATAGCCAAATTATG
1 TT--ACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCAAACTATG
*
82098624 GTCTTACATATAAACACTGCCATGGTCCAGCCATGGTC
64 GTCTTACATATAAACACTGCCATGGTCCAACCATGGTC
*
82098662 TTACGTTCATAGTGTCATAACCCAGTTATGGTCTTATCCATCA
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTAT-CATCA
82098705 ATTCATCATT
Statistics
Matches: 129, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
101 33 0.26
102 4 0.03
103 92 0.71
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (101 bp):
TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCAAACTATGGT
CTTACATATAAACACTGCCATGGTCCAACCATGGTC
Found at i:82106497 original size:38 final size:39
Alignment explanation
Indices: 82106442--82106570 Score: 100
Period size: 40 Copynumber: 3.3 Consensus size: 39
82106432 AATCAAGCAT
* * *
82106442 CTTCGGGGT-TTAGCCGGATATAACCACTCGCA-CAAGGC
1 CTTC-GGGTCTTAACCGGATATAACCACTAGCATAAAGGC
***
82106480 CTTCGGGTCTTAACCGGATATGGTCACTAGCATAAAGGC
1 CTTCGGGTCTTAACCGGATATAACCACTAGCATAAAGGC
* * ** * * *
82106519 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTA-ACCGGATATAACCACTAGCATAAAGGC
*
82106559 CTTCGGATCTTA
1 CTTCGGGTCTTA
82106571 GTCCGGATGT
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
37 4 0.05
38 22 0.30
39 16 0.22
40 32 0.43
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (39 bp):
CTTCGGGTCTTAACCGGATATAACCACTAGCATAAAGGC
Found at i:82106550 original size:40 final size:40
Alignment explanation
Indices: 82106471--82106621 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
82106461 ATAACCACTC
* * * *
82106471 GCAC-AAGGCCTTCGGGTCTTA-ACCGGATATGGTCACTA
1 GCACAAAGGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
*
82106509 GCATAAAGGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
1 GCACAAAGGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
* * *
82106549 GCACAAATGCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTA
1 GCACAAAGGCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TA
* *
82106590 GCACAAAAGCCTTCGGGACTTAGCCCAGATAT
1 GCACAAAGGCCTTCGGGACTTAGCCCGGATAT
82106622 CATTCGAGTA
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
38 3 0.03
39 19 0.20
40 44 0.46
41 26 0.27
42 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (40 bp):
GCACAAAGGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
Found at i:82107852 original size:38 final size:38
Alignment explanation
Indices: 82107810--82107885 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
82107800 CAAGAACTCC
82107810 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
82107848 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
82107886 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:82114531 original size:46 final size:46
Alignment explanation
Indices: 82114384--82114634 Score: 167
Period size: 46 Copynumber: 5.3 Consensus size: 46
82114374 CTAGTGCAGG
* *
82114384 ACATGTCTGGGACATGCATCGGCCACA-TTGTGAGAGCCAGTGTAAGA
1 ACATGTCTGGGACATGCATCGGCCTCAGATGT-AGAGCCAGTGTAA-A
* * * * * * *
82114431 CCATGTCTGGGACATGGCAT-TGCAATTGAGACG-AGAGCTAGTGTAAG
1 ACATGTCTGGGACAT-GCATCGGC--CTCAGATGTAGAGCCAGTGTAAA
82114478 ACATGTCTGGGACATGCATCGGCCTCAAGATGTA-AGCCAGTGTAAA
1 ACATGTCTGGGACATGCATCGGCCTC-AGATGTAGAGCCAGTGTAAA
*
82114524 ACATGTCTGGGACATGCATCGG-CTACGAGATGT---GCCAGTATAAGA
1 ACATGTCTGGGACATGCATCGGCCT-C-AGATGTAGAGCCAGTGTAA-A
* ** ** * * *
82114569 CCATGTCTAAGACATGGCATCGGCACGGATATGTGAGAGCTAGTGTAAG
1 ACATGTCTGGGACAT-GCATCGGC-CTCAGATGT-AGAGCCAGTGTAAA
82114618 ACTATGTCTGGGACATG
1 AC-ATGTCTGGGACATG
82114635 GCGTCAGCCT
Statistics
Matches: 157, Mismatches: 30, Indels: 32
0.72 0.14 0.15
Matches are distributed among these distances:
44 9 0.06
45 16 0.10
46 59 0.38
47 33 0.21
48 17 0.11
49 3 0.02
50 20 0.13
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
ACATGTCTGGGACATGCATCGGCCTCAGATGTAGAGCCAGTGTAAA
Found at i:82115086 original size:15 final size:15
Alignment explanation
Indices: 82115066--82115096 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
82115056 AATGAATTAA
82115066 TATGGTGTGATAAAC
1 TATGGTGTGATAAAC
82115081 TATGGTGTGATAAAC
1 TATGGTGTGATAAAC
82115096 T
1 T
82115097 TAGTATCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (15 bp):
TATGGTGTGATAAAC
Found at i:82122968 original size:47 final size:47
Alignment explanation
Indices: 82122905--82123426 Score: 810
Period size: 47 Copynumber: 11.0 Consensus size: 47
82122895 CTGATAGTAA
*
82122905 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
82122952 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
*
82122999 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
82123046 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* * *
82123093 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTTATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
82123140 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
82123189 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
82123238 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
*
82123285 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
82123332 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
* * * * * *
82123381 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
82123427 AGTCCCGAAG
Statistics
Matches: 448, Mismatches: 23, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
47 316 0.71
49 132 0.29
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.28
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
Found at i:82123316 original size:192 final size:192
Alignment explanation
Indices: 82122902--82123428 Score: 868
Period size: 192 Copynumber: 2.8 Consensus size: 192
82122892 GAACTGATAG
*
82122902 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCGAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
*
82122967 GTGATGAATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
82123030 TG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
131 TGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
* * *
82123090 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTTATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
82123155 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
82123220 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
* *
82123282 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
* * * * * * *
82123347 GTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
82123412 TGTATA-A-ATGTGATAAG
131 TGTATATATATGTGATAAG
82123429 TCCCGAAGGG
Statistics
Matches: 316, Mismatches: 19, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
188 79 0.25
190 56 0.18
191 1 0.00
192 180 0.57
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (192 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
Found at i:82123603 original size:37 final size:37
Alignment explanation
Indices: 82123547--82123625 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
82123537 CCGAGCTCTA
* ** *
82123547 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
*
82123584 AAGACCCGATAACTTCGTGTGAAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
82123621 AAGAC
1 AAGAC
82123626 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
Found at i:82128320 original size:93 final size:90
Alignment explanation
Indices: 82128155--82128373 Score: 239
Period size: 93 Copynumber: 2.4 Consensus size: 90
82128145 GCATATCTGT
* *
82128155 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTAGCCGATGCATGTCCTAGAC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAGAC
* * *
82128220 ATGCCTTACACTGGCT-TACGT-CTCGAG
64 ATGCCTTACACTAGCTCT-CATAAT-GAG
*
82128247 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCTTC-TCAATGTCGATGCCATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGATG-CATGTCCCA
* *
82128310 GATATGCCTTACACTAGCTCTCATAATGTG
61 GACATGCCTTACACTAGCTCTCATAATGAG
* *
82128340 GCCAATGCATGTCCCAGACATGTCTTACAGTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
82128374 TCACACAAGT
Statistics
Matches: 110, Mismatches: 10, Indels: 13
0.83 0.08 0.10
Matches are distributed among these distances:
89 3 0.03
90 16 0.15
91 15 0.14
92 13 0.12
93 61 0.55
94 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (90 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCATGTCCCAGACAT
GCCTTACACTAGCTCTCATAATGAG
Found at i:82128374 original size:46 final size:47
Alignment explanation
Indices: 82128113--82128375 Score: 181
Period size: 46 Copynumber: 5.6 Consensus size: 47
82128103 GGGCCAGTGC
* * ** *
82128113 CATGTCCCAGACATTGTCTTACACAAGTTC-TAGCATATCTGTGCCGATG
1 CATGTCCCAGACA-TGTCTTACACTAGCTCTTCTCA-ATGTG-GCCGATG
* * * *
82128162 CCATGTCCCAGACATGGTCTTACACTAACACATCTC---GTAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTTCTCAATGTGGCCGATG
* * * * *
82128208 CATGTCCTAGACATGCCTTACACTGGCT-TACGTC--TCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTC-TCAAT-GTGGCCGATG
82128254 CATGTCCCAGACATGTCTTACACTAGCACTCTTCTCAATGT---CGATG
1 CATGTCCCAGACATGTCTTACACTAG--CTCTTCTCAATGTGGCCGATG
* * *
82128300 CCATGTCCCAGATATGCCTTACACTAGCTC-TCAT-AATGTGGCCAATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTTC-TCAATGTGGCCGATG
*
82128347 CATGTCCCAGACATGTCTTACAGTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
82128376 ACACAAGTGA
Statistics
Matches: 170, Mismatches: 28, Indels: 34
0.73 0.12 0.15
Matches are distributed among these distances:
43 1 0.01
44 19 0.11
45 17 0.10
46 69 0.41
47 29 0.17
48 4 0.02
49 4 0.02
50 25 0.15
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTTCTCAATGTGGCCGATG
Found at i:82137094 original size:40 final size:40
Alignment explanation
Indices: 82136910--82137094 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
82136900 GCTACTCGTT
* *
82136910 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * * * *
82136950 CAAATGCCTTCGGGACTTAACTCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
82136990 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
82137029 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
82137070 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82137095 CATCATTCGA
Statistics
Matches: 118, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 76 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:82137744 original size:37 final size:37
Alignment explanation
Indices: 82137694--82137781 Score: 167
Period size: 37 Copynumber: 2.4 Consensus size: 37
82137684 AGGCTACCTA
82137694 TGGCCGAACATACACATAACTTATGTACTCATTCATG
1 TGGCCGAACATACACATAACTTATGTACTCATTCATG
*
82137731 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTCATTCATG
82137768 TGGCCGAACATACA
1 TGGCCGAACATACA
82137782 TGTCTATGTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (37 bp):
TGGCCGAACATACACATAACTTATGTACTCATTCATG
Found at i:82145016 original size:40 final size:40
Alignment explanation
Indices: 82144963--82145126 Score: 192
Period size: 40 Copynumber: 4.1 Consensus size: 40
82144953 CGGAATTTAA
* *
82144963 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
82145003 CCGGATTTAGTAACTCGCACCAATGCCTTCGCG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
82145042 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
82145082 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
82145122 CCGGA
1 CCGGA
82145127 CATCATTCGA
Statistics
Matches: 105, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 32 0.30
40 60 0.57
41 12 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:82145110 original size:79 final size:80
Alignment explanation
Indices: 82144970--82145126 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 80
82144960 TAACCGGATA
* * * *
82144970 TAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGC
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGC
82145035 G-CTTAGCCCGGAAT
66 GACTTAGCCCGGAAT
** * *
82145049 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACCAAAGCCTTC
*
82145112 GGGACTTAGCCCGGA
64 GCGACTTAGCCCGGA
82145127 CATCATTCGA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 48 0.73
80 15 0.23
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGC
GACTTAGCCCGGAAT
Found at i:82151460 original size:28 final size:28
Alignment explanation
Indices: 82151428--82151492 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
82151418 ATTTACTATA
* *
82151428 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTACGTATGCAAAATGACCATT
* *
82151456 ATACCCCTACGTATGCTAAATGACCTTT
1 ATACCCCTACGTATGCAAAATGACCATT
82151484 ATACCCCTA
1 ATACCCCTA
82151493 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTACGTATGCAAAATGACCATT
Found at i:82151639 original size:28 final size:29
Alignment explanation
Indices: 82151598--82151660 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 29
82151588 AGGAAGCGTC
*
82151598 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCCATGCCACAAATTATCTGTAT
*
82151626 CTGGTGGCCCTGCCACAAATTATCTGTAT
1 CTGGTGGCCATGCCACAAATTATCTGTAT
82151655 CTGGTG
1 CTGGTG
82151661 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 25 0.78
29 7 0.22
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (29 bp):
CTGGTGGCCATGCCACAAATTATCTGTAT
Found at i:82151671 original size:29 final size:29
Alignment explanation
Indices: 82151608--82151685 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 29
82151598 CTGGTGGCTA
*
82151608 TGCCACAAATTATCTGT-TCTGGTGGCCC
1 TGCCACAAATTATCTGTATCTGGTGACCC
*
82151636 TGCCACAAATTATCTGTATCTGGTGACTC
1 TGCCACAAATTATCTGTATCTGGTGACCC
* *
82151665 TGTCAC--ATTTTCTGTATCTGG
1 TGCCACAAATTATCTGTATCTGG
82151686 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 14 0.31
28 17 0.38
29 14 0.31
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (29 bp):
TGCCACAAATTATCTGTATCTGGTGACCC
Found at i:82152153 original size:18 final size:18
Alignment explanation
Indices: 82152114--82152154 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
82152104 TAATAAGGCC
* *
82152114 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
82152132 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
82152150 TTTTA
1 TTTTA
82152155 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:82160105 original size:52 final size:52
Alignment explanation
Indices: 82160042--82160146 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
82160032 TTCACCAATG
82160042 ATGATGATTCCAACATGCTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
1 ATGATGATTCCAACATGCTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
*
82160094 ATGATGATTCCAACATGTTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
1 ATGATGATTCCAACATGCTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
82160146 A
1 A
82160147 CCGCACAATT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (52 bp):
ATGATGATTCCAACATGCTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
Found at i:82165357 original size:26 final size:26
Alignment explanation
Indices: 82165321--82165430 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
82165311 CATGAAATTC
82165321 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
82165347 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
82165373 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
82165399 TTGTCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
82165425 TTATCA
1 TTATCA
82165431 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:82187835 original size:21 final size:21
Alignment explanation
Indices: 82187810--82187851 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
82187800 GATTTTCCTC
82187810 TATTTTTTTTGTTACATTTTT
1 TATTTTTTTTGTTACATTTTT
* *
82187831 TATTTTTTTTTTTAGATTTTT
1 TATTTTTTTTGTTACATTTTT
82187852 ACGTATTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (21 bp):
TATTTTTTTTGTTACATTTTT
Found at i:82192538 original size:49 final size:49
Alignment explanation
Indices: 82192479--82192653 Score: 158
Period size: 49 Copynumber: 3.6 Consensus size: 49
82192469 TGTTGTGTGT
* *
82192479 CAGTGTAAGACCTGTCTGGGACATGGCATTGACATCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATTGACATCGATAGATGAAAGC
* * * * * **
82192528 CAGTGTAAGACCTGTTTGGGACATGGC-TTGGGCCTCGATATATGAAATT
1 CAGTGTAAGACCTGTCTAGGACATGGCATT-GACATCGATAGATGAAAGC
* * * * * **
82192577 TAGTGTAAGACCTGTCTAGGAAATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATTGACATCGATAGATGAAAGC
*
82192624 CAGTGTAAGACCATTTCTAGGACATGGCAT
1 CAGTGTAAGACC-TGTCTAGGACATGGCAT
82192654 CGACGTCTTA
Statistics
Matches: 100, Mismatches: 23, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
47 14 0.14
48 17 0.17
49 68 0.68
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATTGACATCGATAGATGAAAGC
Found at i:82196022 original size:47 final size:47
Alignment explanation
Indices: 82195904--82196073 Score: 192
Period size: 47 Copynumber: 3.7 Consensus size: 47
82195894 GGATGGTTGA
*
82195904 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
82195952 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
** *
82195995 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTTGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
*
82196044 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
82196074 GCTTATGGGC
Statistics
Matches: 105, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 30 0.29
46 29 0.28
47 31 0.30
48 2 0.02
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:82203499 original size:46 final size:46
Alignment explanation
Indices: 82203449--82203629 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 46
82203439 TGGTTGAGCA
82203449 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82203495 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
82203540 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82203588 CCCGAGCTCGTTTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGA--AC---TCGTTGAGTTGAGTCCGAGTTCACTTATGG
82203630 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 23
0.74 0.10 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 32 0.30
47 28 0.26
48 3 0.03
50 4 0.04
51 30 0.28
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82206074 original size:49 final size:47
Alignment explanation
Indices: 82205775--82206098 Score: 228
Period size: 49 Copynumber: 6.8 Consensus size: 47
82205765 ACATAGGGTA
* * * * * *
82205775 CGATCCCGATGCCATGTTCCAAACATGGTCTTACGCTGGCTCTCACAT
1 CGATGCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCACAT
* * * *
82205823 CTAAT-TCGATGCCATGTCCCAGACAGGTCTTACACTAACTTCCATACAT
1 C-GATGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTC--ACAT
* * * * * *
82205872 C-AAGTCTGATGTCATGTCCTAGACAGGTCTTACACTGGCTCTCACTTAT
1 CGATG-CCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCAC--AT
* * *
82205921 CTG-TGTCGATGCCATGTCCCAGACAGGTCTTACACTGAC--ACACCT
1 C-GATGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCACAT
* * * * * *
82205966 C-AAGCCGATACCATGTCCCAGACAGGTTTTACACTAACTTGCATAT
1 CGATGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCACAT
* * *
82206012 CTTGAGGCTGATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATCTAT
1 C--GATGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCA-C-AT
* *
82206063 CGATGCCGATGCCATGTCCCAGATAGGTTTTACACT
1 CGATGCCGATGCCATGTCCCAGACAGGTCTTACACT
82206099 AGCACACACA
Statistics
Matches: 213, Mismatches: 46, Indels: 33
0.73 0.16 0.11
Matches are distributed among these distances:
44 31 0.15
45 2 0.01
46 4 0.02
47 19 0.09
48 18 0.08
49 135 0.63
50 1 0.00
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CGATGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCACAT
Found at i:82206096 original size:142 final size:144
Alignment explanation
Indices: 82205829--82206107 Score: 388
Period size: 142 Copynumber: 2.0 Consensus size: 144
82205819 ACATCTAATT
* * * *
82205829 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTCCATACATCAAGTCTGATGTCATGTCCTAG
1 CGATACCATGTCCCAGACAGGTCTTACACTAACTTCCATACATCAAGGCTGATGCCATGTCCCAG
*
82205894 ACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACT-G
66 ACAGGTCTTACACTGGCTCTCACTTATCTGTGCCGATGCCATGTCCCAGACAGGTCTTACACTAG
82205958 -ACACACCTCAAGC
131 CACACACCTCAAGC
* * **
82205971 CGATACCATGTCCCAGACAGGTTTTACACTAACTTGCATATC-TTGAGGCTGATGCCATGTCCCA
1 CGATACCATGTCCCAGACAGGTCTTACACTAACTTCCATA-CATCAAGGCTGATGCCATGTCCCA
* * *
82206035 GACAGGTCTTACACTGGCTTTCA-TCTATC-GATGCCGATGCCATGTCCCAGATAGGTTTTACAC
65 GACAGGTCTTACACTGGCTCTCACT-TATCTG-TGCCGATGCCATGTCCCAGACAGGTCTTACAC
82206098 TAGCACACAC
128 TAGCACACAC
82206108 ATCACCCAAA
Statistics
Matches: 120, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
141 2 0.02
142 110 0.92
143 2 0.02
144 6 0.05
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (144 bp):
CGATACCATGTCCCAGACAGGTCTTACACTAACTTCCATACATCAAGGCTGATGCCATGTCCCAG
ACAGGTCTTACACTGGCTCTCACTTATCTGTGCCGATGCCATGTCCCAGACAGGTCTTACACTAG
CACACACCTCAAGC
Found at i:82219050 original size:43 final size:42
Alignment explanation
Indices: 82219002--82219106 Score: 106
Period size: 42 Copynumber: 2.5 Consensus size: 42
82218992 TAAGTCTAAC
* * **
82219002 GTCCCAGACGTGGTCTTACATGTAATTCAGTAT-TGATGCCTCT
1 GTCCCAGACGTGGTCTTACATG-AAATCAG-ATGCGATGCCAAT
*
82219045 GTCCCAGACAG-GGTCTTATATGAAATCAGATGCGATGCCAAT
1 GTCCCAGAC-GTGGTCTTACATGAAATCAGATGCGATGCCAAT
* *
82219087 GTCCCGGACATGGTCTTACA
1 GTCCCAGACGTGGTCTTACA
82219107 CATAAATTTC
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
41 2 0.04
42 29 0.57
43 19 0.37
44 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACATGAAATCAGATGCGATGCCAAT
Found at i:82219152 original size:37 final size:37
Alignment explanation
Indices: 82219111--82219185 Score: 134
Period size: 37 Copynumber: 2.0 Consensus size: 37
82219101 CTTACACATA
82219111 AATTTCCAATCGAGGACTGCGA-CCCAGACACGGTCTT
1 AATTTCCAATCGAGGACTGC-ATCCCAGACACGGTCTT
82219148 AATTTCCAATCGAGGACTGCATCCCAGACACGGTCTT
1 AATTTCCAATCGAGGACTGCATCCCAGACACGGTCTT
82219185 A
1 A
82219186 CACGATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (37 bp):
AATTTCCAATCGAGGACTGCATCCCAGACACGGTCTT
Found at i:82224995 original size:13 final size:13
Alignment explanation
Indices: 82224977--82225008 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82224967 CATAAATCAC
82224977 TTTTTTTTT--AA
1 TTTTTTTTTGAAA
82224988 TTTTTTTTTGAAA
1 TTTTTTTTTGAAA
82225001 TTTTTTTT
1 TTTTTTTT
82225009 AAACTTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 9 0.47
13 10 0.53
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTTTTTTGAAA
Found at i:82233759 original size:41 final size:43
Alignment explanation
Indices: 82233639--82233803 Score: 142
Period size: 45 Copynumber: 3.8 Consensus size: 43
82233629 CATAGGATTT
* * *
82233639 TCGATATGTGTTCTCGTGTAAGACCACGTCTGGGAC-GTTGGCA
1 TCGATATGTGATATCGTGTAAGACCATGTCTGGGACAG-TGGCA
* *
82233682 TCAATATATGTGGTTAT-GTGTAAGACCATGTCTGGGACA-TCGGCA
1 TC--GATATGT-GATATCGTGTAAGACCATGTCTGGGACAGT-GGCA
* * * *
82233727 TTG-TATTTGAT-TCGTGTAAGACCCTGTTTGGGACAGTGGCA
1 TCGATATGTGATATCGTGTAAGACCATGTCTGGGACAGTGGCA
* * *
82233768 TCGATATGTGATATCATGTAAGACCACGTATGGGAC
1 TCGATATGTGATATCGTGTAAGACCATGTCTGGGAC
82233804 GTTGGCGTTG
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
40 1 0.01
41 28 0.29
42 12 0.12
43 21 0.21
44 1 0.01
45 31 0.32
46 4 0.04
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
TCGATATGTGATATCGTGTAAGACCATGTCTGGGACAGTGGCA
Found at i:82234005 original size:20 final size:20
Alignment explanation
Indices: 82233980--82234041 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
82233970 GTTGCAAATC
82233980 ATATATGATGTAAATGAAAA
1 ATATATGATGTAAATGAAAA
**
82234000 ATATATG-TGT---T-AATC
1 ATATATGATGTAAATGAAAA
82234015 ATATATGATGTAAATGAAAA
1 ATATATGATGTAAATGAAAA
82234035 ATATATG
1 ATATATG
82234042 TGTTTATGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
15 9 0.27
16 4 0.12
19 4 0.12
20 16 0.48
ACGTcount: A:0.48, C:0.02, G:0.15, T:0.35
Consensus pattern (20 bp):
ATATATGATGTAAATGAAAA
Found at i:82234019 original size:35 final size:35
Alignment explanation
Indices: 82233976--82234045 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
82233966 ATGTGTTGCA
82233976 AATCATATATGATGTAAATGAAAAATATATGTGTT
1 AATCATATATGATGTAAATGAAAAATATATGTGTT
82234011 AATCATATATGATGTAAATGAAAAATATATGTGTT
1 AATCATATATGATGTAAATGAAAAATATATGTGTT
82234046 TATGGAAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (35 bp):
AATCATATATGATGTAAATGAAAAATATATGTGTT
Found at i:82236437 original size:16 final size:17
Alignment explanation
Indices: 82236416--82236456 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
82236406 TTATATTATA
82236416 TATTATAA-AATTATTT
1 TATTATAAGAATTATTT
*
82236432 TATTATAAGTATTATTT
1 TATTATAAGAATTATTT
82236449 TAATTATA
1 T-ATTATA
82236457 TATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 8 0.36
18 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TATTATAAGAATTATTT
Found at i:82236462 original size:16 final size:16
Alignment explanation
Indices: 82236425--82236502 Score: 59
Period size: 16 Copynumber: 4.6 Consensus size: 16
82236415 ATATTATAAA
82236425 ATTATTTT-ATTATAAGT
1 ATTATTTTAATTAT-A-T
82236442 ATTATTTTAATTATAT
1 ATTATTTTAATTATAT
*
82236458 ATTATTATTACTTATTATGT
1 ATTATT-TTA---ATTATAT
** *
82236478 ATTATTTTTCTTAAAT
1 ATTATTTTAATTATAT
82236494 ATTATTTTA
1 ATTATTTTA
82236503 CATCTCTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 19 0.38
17 12 0.24
18 5 0.10
19 2 0.04
20 12 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTATTTTAATTATAT
Found at i:82236474 original size:20 final size:18
Alignment explanation
Indices: 82236425--82236483 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 18
82236415 ATATTATAAA
*
82236425 ATTATTTTATTATA-AGT
1 ATTATTTTATTATATATT
82236442 ATTATTTTAATTATATATT
1 ATTATTTT-ATTATATATT
*
82236461 ATTATTACTTATTATGTATT
1 ATTATT--TTATTATATATT
82236481 ATT
1 ATT
82236484 TTTCTTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
17 8 0.22
18 6 0.17
19 8 0.22
20 12 0.33
21 2 0.06
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (18 bp):
ATTATTTTATTATATATT
Found at i:82236480 original size:36 final size:34
Alignment explanation
Indices: 82236421--82236503 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 34
82236411 TTATATATTA
82236421 TAAA-ATTATTTTA-TTATAAGTATTATTTTAAT
1 TAAATATTATTTTACTTATAAGTATTATTTTAAT
* * **
82236453 TATATATTATTATTACTTATTATGTATTATTTTTCT
1 TAAATATTATT-TTACTTA-TAAGTATTATTTTAAT
82236489 TAAATATTATTTTAC
1 TAAATATTATTTTAC
82236504 ATCTCTTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
32 3 0.07
33 6 0.14
34 3 0.07
35 7 0.17
36 23 0.55
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (34 bp):
TAAATATTATTTTACTTATAAGTATTATTTTAAT
Found at i:82236482 original size:10 final size:9
Alignment explanation
Indices: 82236425--82236483 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 9
82236415 ATATTATAAA
82236425 ATTATT-TT
1 ATTATTATT
* *
82236433 ATTATAAGT
1 ATTATTATT
82236442 ATTATT-TT
1 ATTATTATT
82236450 AATTATATATT
1 -ATTAT-TATT
82236461 ATTATTACTT
1 ATTATTA-TT
82236471 ATTATGTATT
1 ATTAT-TATT
82236481 ATT
1 ATT
82236484 TTTCTTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 6 0.15
9 13 0.32
10 18 0.44
11 4 0.10
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (9 bp):
ATTATTATT
Found at i:82236499 original size:3 final size:3
Alignment explanation
Indices: 82236425--82236483 Score: 50
Period size: 3 Copynumber: 19.0 Consensus size: 3
82236415 ATATTATAAA
* *
82236425 ATT ATT -TT ATT ATA AGT ATT ATT -TT AATT ATAT ATT ATT ATT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT AT-T ATT ATT ATT A-TT
82236471 ATT ATGT ATT ATT
1 ATT AT-T ATT ATT
82236484 TTTCTTAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
2 4 0.09
3 31 0.67
4 11 0.24
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:82236939 original size:7 final size:7
Alignment explanation
Indices: 82236927--82236951 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
82236917 ACTATGTTAT
82236927 TATATTA
1 TATATTA
82236934 TATATTA
1 TATATTA
82236941 TATATTA
1 TATATTA
82236948 TATA
1 TATA
82236952 CTATTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATATTA
Done.