Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 249 of 316
Found at i:82242960 original size:37 final size:37
Alignment explanation
Indices: 82242901--82243009 Score: 200
Period size: 37 Copynumber: 2.9 Consensus size: 37
82242891 AGCTCAGATG
* *
82242901 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
82242938 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
82242975 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
82243010 ATATATTTCC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:82243211 original size:48 final size:48
Alignment explanation
Indices: 82243156--82244040 Score: 1331
Period size: 48 Copynumber: 18.1 Consensus size: 48
82243146 ACACATCGCC
* *
82243156 TACATATTTCACACTAGCCATTCGGCTTTATCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82243204 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
82243252 TATATATGTTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATA--TTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
82243302 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * * *
82243352 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
82243404 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82243452 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82243500 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82243548 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82243596 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * * * *
82243648 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
82243700 TATATATTTCGCATTAGCGATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82243748 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
82243796 TACATATTTAACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82243844 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82243892 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82243940 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* ** * * *
82243988 TAGATATTTCACATTAGCCATTCGAATTTGCCACACATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82244036 TACAT
1 TACAT
82244041 CAATTTCAGC
Statistics
Matches: 777, Mismatches: 48, Indels: 24
0.92 0.06 0.03
Matches are distributed among these distances:
48 555 0.71
49 2 0.00
50 86 0.11
52 134 0.17
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:82243660 original size:296 final size:294
Alignment explanation
Indices: 82243156--82244040 Score: 1487
Period size: 296 Copynumber: 3.0 Consensus size: 294
82243146 ACACATCGCC
* * * *
82243156 TACATATTTCACACTAGCCATTCGGCTTTATCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
*
82243221 CCATTCGGCTTTACCACATATACATATCTCATATATATGTTTCACATT-GACCATTCGGCTTTAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATA--TTTCACATTAG-CCATTCGGCTTTAC
82243285 CACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
128 CACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82243350 TATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATATTTCG
193 TATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATATTTCG
82243415 CATTAGCCATTCGGCTTTACCACATATACATATCTCA
258 CATTAGCCATTCGGCTTTACCACATATACATATCTCA
82243452 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
82243517 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
82243582 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
131 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--AT
82243647 ATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATATTTCGC
194 ATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATATTTCGC
*
82243712 ATTAGCGATTCGGCTTTACCACATATACATATCTCA
259 ATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82243748 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTAACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
*
82243813 CCATTCGGCTTTACCACATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
82243878 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--AT
131 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
* * * * * * *
82243941 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATAGATATTTCACAT
196 ATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATATTTCGCAT
** * * *
82244002 TAGCCATTCGAATTTGCCACACATACATATCTTA
261 TAGCCATTCGGCTTTACCACATATACATATCTCA
82244036 TACAT
1 TACAT
82244041 CAATTTCAGC
Statistics
Matches: 564, Mismatches: 22, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
288 46 0.08
292 43 0.08
294 87 0.15
295 1 0.00
296 387 0.69
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (294 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
ATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATATTTCGCAT
TAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:82247346 original size:28 final size:27
Alignment explanation
Indices: 82247315--82247419 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 27
82247305 CTGACTGATT
*
82247315 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTC-ATTAAAGAAC
* *
82247343 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTC-ATTA-AAGAAC
*
82247372 TCGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCA-TTAAAGAAC
* *
82247400 TTGCACACACAGTGCCTCAT
1 TCGCACACATAGTG-CTCAT
82247420 AACTCCAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
27 2 0.03
28 33 0.52
29 27 0.43
30 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGTGCTCATTAAAGAAC
Found at i:82247545 original size:40 final size:40
Alignment explanation
Indices: 82247446--82247773 Score: 482
Period size: 40 Copynumber: 8.2 Consensus size: 40
82247436 CCTTCGAGGT
* *
82247446 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
82247486 TTA-CCCGGATACATCACTAGCACGAGTGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
82247525 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
82247565 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * *
82247605 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACT-AGCACGAATGCTCTTCGGAAC
*
82247645 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
** *
82247685 TTAGCCCTTATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * *
82247725 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACT-AGCACGAATGCTCTTCGGAAC
82247765 TTAGCCCGG
1 TTAGCCCGG
82247774 TTATATAACT
Statistics
Matches: 263, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
39 38 0.14
40 224 0.85
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
Found at i:82247662 original size:120 final size:120
Alignment explanation
Indices: 82247446--82247773 Score: 552
Period size: 120 Copynumber: 2.7 Consensus size: 120
82247436 CCTTCGAGGT
* * * * *
82247446 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGAACTTA-CCCGGATACATCA-CTAGCAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACATC-AGCAC
* *
82247509 GAGTGCTCTTCGGAACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
65 GAATGCTCTTCGGGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
82247565 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACATCAGCACG
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACATCAGCACG
82247630 AATGCTCTTCGGGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
66 AATGCTCTTCGGGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
**
82247685 TTAGCCCTTATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACATCAGCACG
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACATCAGCACG
82247750 AATGCTCTTCGGGACTTAGCCCGG
66 AATGCTCTTCGGGACTTAGCCCGG
82247774 TTATATAACT
Statistics
Matches: 198, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
119 40 0.20
120 157 0.79
121 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACATCAGCACG
AATGCTCTTCGGGACTTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
Found at i:82249095 original size:37 final size:37
Alignment explanation
Indices: 82249036--82249107 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
82249026 AGCTCAGATG
*
82249036 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
82249073 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
82249108 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:82249309 original size:48 final size:48
Alignment explanation
Indices: 82249254--82250035 Score: 1192
Period size: 48 Copynumber: 16.1 Consensus size: 48
82249244 ACACATCGCC
*
82249254 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82249302 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82249350 TATATATGTTTCACATT-GACCATTCGACTTTACCACATATGCATATCTCA
1 TACATA--TTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
82249400 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * * *
82249450 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82249498 TATATATATTCGCATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82249547 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82249595 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82249643 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * * *
82249693 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
82249743 TATATATTTCGCATTAGCGATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82249791 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82249839 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT-TCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82249886 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATAGATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCA
82249936 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82249984 TACATATTTCACATTAGCCATTC-GCTTTGCCACACATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82250031 TACAT
1 TACAT
82250036 CAATTTCAGC
Statistics
Matches: 679, Mismatches: 43, Indels: 25
0.91 0.06 0.03
Matches are distributed among these distances:
47 65 0.10
48 353 0.52
49 50 0.07
50 211 0.31
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:82249640 original size:293 final size:289
Alignment explanation
Indices: 82249254--82250028 Score: 1250
Period size: 293 Copynumber: 2.7 Consensus size: 289
82249244 ACACATCGCC
* *
82249254 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* * *
82249319 CCATTCGGCTTTACCACATATACATATCTCATATATATGTTTCACATT-GACCATTCGACTTTAC
66 CCATTCGGCTTTACCACATATGCATATCTCATACATA--TTTCACATTAG-CCATTCGGCTTTAC
*
82249383 CACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
128 CACATATACATATCTCATACATATTTCACATTAGCCATTC-GCTTTACCACATATACATATCTCA
* *
82249448 TATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTCGCAT
192 TATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATACATAT-TTCACAT
82249513 TAGCCATTCGGCTTTACCACATATACATGTCTCA
256 TAGCCATTCGGCTTTACCACATATACATGTCTCA
82249547 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
82249612 CCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* * * *
82249677 ATATACATATCTCATATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCAT
131 ATATACATATCTC--ATACATATTTCACATTAGCCATTC-GCTTTACCACATATACATATCTCAT
* * * * * *
82249742 ATATATATTTCGCATTAGCGATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
193 ATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATACATATTTCACATTA
82249807 GCCATTCGGCTTTACCACATATACATGTCTCA
258 GCCATTCGGCTTTACCACATATACATGTCTCA
82249839 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT-TCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
82249903 CCATTCGGCTTTACCACATATATAG-ATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
66 CCATTCGGCTTTACCAC--ATAT-GCATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
* *
82249967 CACATATACATATCTCATACATATTTCACATTAGCCATTCGCTTTGCCACACATACATATCT
128 CACATATACATATCTCATACATATTTCACATTAGCCATTCGCTTTACCACATATACATATCT
82250029 TATACATCAA
Statistics
Matches: 451, Mismatches: 25, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
290 19 0.04
291 97 0.22
292 83 0.18
293 251 0.56
294 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (289 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATACATATCTCATACATATTTCACATTAGCCATTCGCTTTACCACATATACATATCTCATATA
TATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATACATATTTCACATTAGCC
ATTCGGCTTTACCACATATACATGTCTCA
Found at i:82249668 original size:243 final size:243
Alignment explanation
Indices: 82249268--82250035 Score: 1278
Period size: 243 Copynumber: 3.2 Consensus size: 243
82249258 TATTTCACAC
*
82249268 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
* *
82249333 CACATATACATATCTCATATATATGTTTCACATT-GACCATTCGACTTTACCACATATGCATATC
66 CACATATACATATCTCATACATA--TTTCACATTAG-CCATTCGGCTTTACCACATATGCATATC
82249397 TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCAC
128 TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCAC
82249462 ATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTCGCAT
193 ATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTCGCAT
*
82249513 TAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
82249578 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
66 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
82249643 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
131 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
82249708 AACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCAT
196 AACCATCCAGCTTTACCACATACACATATCTCATATATATA-TTCGCAT
*
82249757 TAGCGATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
* *
82249822 CACATATACATGTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT-TCTCA
66 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
* *
82249886 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATAGATATCTC--ATACATATTTCACA
131 TACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATATATATATTTCACA
* * * * * *
82249949 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-TTCACAT
194 TTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTCGCAT
* * *
82249998 TAGCCATTC-GCTTTGCCACACATACATATCTTATACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82250036 CAATTTCAGC
Statistics
Matches: 499, Mismatches: 20, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
240 26 0.05
241 14 0.03
243 234 0.47
244 128 0.26
245 97 0.19
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (243 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
AACCATCCAGCTTTACCACATACACATATCTCATATATATATTCGCAT
Found at i:82249800 original size:341 final size:339
Alignment explanation
Indices: 82249254--82250028 Score: 1261
Period size: 341 Copynumber: 2.3 Consensus size: 339
82249244 ACACATCGCC
* *
82249254 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* * *
82249319 CCATTCGGCTTTACCACATATACATATCTCATATATATGTTTCACATTGACCATTCGACTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATCCGACTTTACC
**
82249384 ACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
131 ACATACACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-
* * *
82249449 ATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTCGCATT
195 ATACATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATACATAT-TTCACATT
82249514 AGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAGCCATTCGGCTTTACC
259 AGCCATTCGGCTTTACCACATATACAT-TCTCATACATATTTCACATTAGCCATTCGGCTTTACC
82249579 AC-ATATACATATCTCA
323 ACAATATACATATCTCA
*
82249595 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
82249660 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATCC-AGCTTTAC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATCCGA-CTTTAC
* * *
82249724 CACATACACATATCTCATATATATATTTCGCATTAGCGATTCGGCTTTACCACATATACATATCT
130 CACATACACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
* * * * *
82249789 C-ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACAT
193 CAATACATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATACATATTTCACAT
82249853 TAGCCATTCGGCTTTACCACATATACATTCTCATACATATTTCACATTAGCCATTCGGCTTTACC
258 TAGCCATTCGGCTTTACCACATATACATTCTCATACATATTTCACATTAGCCATTCGGCTTTACC
*
82249918 ACATATATAGATATCTCA
323 ACA-ATATACATATCTCA
82249936 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
82250001 CCATTC-GCTTTGCCACACATACATATCT
66 CCATTCGGCTTTACCACATATACATATCT
82250029 TATACATCAA
Statistics
Matches: 406, Mismatches: 23, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
339 39 0.10
340 55 0.14
341 267 0.66
343 45 0.11
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (339 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATCCGACTTTACC
ACATACACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
TACATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
ATATACATATCTCA
Found at i:82253314 original size:28 final size:27
Alignment explanation
Indices: 82253283--82253387 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 27
82253273 CTGACTGATT
*
82253283 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTC-ATTAAAGAAC
* *
82253311 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTC-ATTA-AAGAAC
*
82253340 TCGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCA-TTAAAGAAC
* *
82253368 TTGCACACACAGTGCCTCAT
1 TCGCACACATAGTG-CTCAT
82253388 AACTCCAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
27 2 0.03
28 33 0.52
29 27 0.43
30 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGTGCTCATTAAAGAAC
Found at i:82253464 original size:39 final size:40
Alignment explanation
Indices: 82253414--82253507 Score: 154
Period size: 39 Copynumber: 2.4 Consensus size: 40
82253404 CCTTCGAGGT
* *
82253414 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
82253454 TTA-CCCGGATACATCACTAGCACGAGTGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
82253493 TTAGCCCGGATACAT
1 TTAGCCCGGATACAT
82253508 ACGTCTTCGA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
39 36 0.72
40 14 0.28
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
Found at i:82253588 original size:40 final size:40
Alignment explanation
Indices: 82253516--82253731 Score: 280
Period size: 40 Copynumber: 5.4 Consensus size: 40
82253506 ATACGTCTTC
* *
82253516 GACTTAGCCCGG-TACATCA-CTAGCACGAATGCTCTTCGG
1 GACTTAGCCCGGATATAACATC-AGCACGAATGCTCTTCGG
82253555 GACTTAGCCCGGATATAACATCAGCACGAATGCTCTTCGG
1 GACTTAGCCCGGATATAACATCAGCACGAATGCTCTTCGG
*
82253595 GACTTAGCCCGGATACATTAC-T-AGCACGAATGCTCTTCGG
1 GACTTAGCCCGGAT--ATAACATCAGCACGAATGCTCTTCGG
* ** * *
82253635 AACTTAGCCCTTATACATCA-CTAGCACGAATGCTCTTCGG
1 GACTTAGCCCGGATATAACATC-AGCACGAATGCTCTTCGG
82253675 GACTTAGCCCGGATATAACATCAGCACGAATGCTCTTCGG
1 GACTTAGCCCGGATATAACATCAGCACGAATGCTCTTCGG
*
82253715 GACTTAGCCCGGTTATA
1 GACTTAGCCCGGATATA
82253732 TAACTCTCAA
Statistics
Matches: 154, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 12 0.08
40 133 0.86
41 3 0.02
42 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GACTTAGCCCGGATATAACATCAGCACGAATGCTCTTCGG
Found at i:82255034 original size:37 final size:37
Alignment explanation
Indices: 82254975--82255046 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
82254965 AGCTCAGATG
*
82254975 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
82255012 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
82255047 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:82255248 original size:48 final size:48
Alignment explanation
Indices: 82255193--82255977 Score: 1194
Period size: 48 Copynumber: 16.1 Consensus size: 48
82255183 ACACATCGCC
*
82255193 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82255241 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82255289 TATATATGTTTCACATT-GACCATTCGACTTTACCACATATGCATATCTCA
1 TACATA--TTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
82255339 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * * *
82255389 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
82255439 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82255487 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82255535 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82255583 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * * *
82255633 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
82255683 TATATATTTCGCATTAGCGATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82255731 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82255779 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
82255827 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATAGATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCA
82255877 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82255925 TACATATTTCACATTAGCCATTCGGCTTTGCCACACATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82255973 TACAT
1 TACAT
82255978 CAATTTCAGC
Statistics
Matches: 682, Mismatches: 45, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
48 418 0.61
49 2 0.00
50 262 0.38
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:82255610 original size:244 final size:244
Alignment explanation
Indices: 82255196--82255977 Score: 1295
Period size: 244 Copynumber: 3.2 Consensus size: 244
82255186 CATCGCCTAC
* *
82255196 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
* *
82255261 TTCGGCTTTACCACATATACATATCTCATATATATGTTTCACATT-GACCATTCGACTTTACCAC
66 TTCGGCTTTACCACATATACATATCTCATACATA--TTTCACATTAG-CCATTCGGCTTTACCAC
82255325 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
128 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
82255390 ATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATAT
193 ATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATAT
* *
82255442 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
82255507 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
82255572 TGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATA
131 TGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATA
82255637 TATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATAT
196 TATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATAT
* *
82255686 ATATTTCGCATTAGCGATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
82255751 TTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
* * *
82255816 TACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAGATATCTC--ATA
131 TGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATATA
* * * * * *
82255879 CATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
194 TATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATAT
* * *
82255928 ATATTTCACATTAGCCATTCGGCTTTGCCACACATACATATCTTATACAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
82255978 CAATTTCAGC
Statistics
Matches: 510, Mismatches: 23, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
242 48 0.09
244 355 0.70
245 1 0.00
246 106 0.21
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (244 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
TGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATA
TATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATAT
Found at i:82255985 original size:98 final size:96
Alignment explanation
Indices: 82255193--82255977 Score: 1194
Period size: 98 Copynumber: 8.1 Consensus size: 96
82255183 ACACATCGCC
* *
82255193 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
82255258 CCATTCGGCTTTACCACATATACATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
* * *
82255289 TATATATGTTTCACATT-GACCATTCGACTTTACCACATATGCATATCTCATACATATTTCACAT
1 TACATA--TTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
82255353 TAGCCATTCGGCTTTACCACATATACATATCTCATA
63 TAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * * * * *
82255389 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
*
82255454 AGCCATTCGGCTTTACCACATATACATGTCTCA
64 AGCCATTCGGCTTTACCACATATACATATCTCA
82255487 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
82255552 CCATTCGGCTTTACCACATATGCATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
*
82255583 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
* * * *
82255648 AACCATCCAGCTTTACCACATACACATATCTCATA
64 AGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
82255683 TATATATTTCGCATTAGCGATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
82255748 CCATTCGGCTTTACCACATATACATGTCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
*
82255779 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
82255844 CCATTCGGCTTTACCACATATATAGATATCTCA
66 CCATTCGGCTTTACCAC--ATATACATATCTCA
82255877 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* * *
82255942 CCATTCGGCTTTGCCACACATACATATCTTA
66 CCATTCGGCTTTACCACATATACATATCTCA
82255973 TACAT
1 TACAT
82255978 CAATTTCAGC
Statistics
Matches: 626, Mismatches: 49, Indels: 28
0.89 0.07 0.04
Matches are distributed among these distances:
96 192 0.31
97 1 0.00
98 336 0.54
100 97 0.15
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCA
Found at i:82263069 original size:40 final size:39
Alignment explanation
Indices: 82263032--82263255 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 39
82263022 GCTACTCGTT
* *
82263032 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* * * * *
82263072 CAGATGCCTTCGGGACTTAACCCAGATTTAGTAACTCCCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
*
82263112 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
82263151 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
82263190 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
82263231 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
82263256 CATCATTCGA
Statistics
Matches: 159, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 74 0.47
40 75 0.47
41 10 0.06
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:82263132 original size:79 final size:77
Alignment explanation
Indices: 82263032--82263248 Score: 238
Period size: 79 Copynumber: 2.7 Consensus size: 77
82263022 GCTACTCGTT
*
82263032 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACA-ATGCCTTCGGGACTTAACCCAG
*
82263097 ATTTAGTAACTCCCA
63 AATTAGTAACTCCCA
* * * *
82263112 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCA-CAATGCCTTCGGGACTTAACCCAGA
*
82263176 ATTAGTAACTCGCA
64 ATTAGTAACTCCCA
* * * * * *
82263190 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAATGCCTTCGGGACTTA
82263249 GCCCGGACAT
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
78 34 0.29
79 58 0.50
80 24 0.21
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAATGCCTTCGGGACTTAACCCAGAAT
TAGTAACTCCCA
Found at i:82263153 original size:39 final size:40
Alignment explanation
Indices: 82263034--82263255 Score: 242
Period size: 39 Copynumber: 5.6 Consensus size: 40
82263024 TACTCGTTCA
* *
82263034 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA-C
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACC
* * * *
82263073 AGATGCCTTCGGGACTTAACCCAGATTTAGTAACTCCCACC
1 A-ATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
82263114 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
*
82263153 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * * *
82263192 AATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCACC
*
82263232 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
82263256 CATCATTCGA
Statistics
Matches: 158, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 73 0.46
40 72 0.46
41 11 0.07
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:82268604 original size:119 final size:119
Alignment explanation
Indices: 82268419--82268983 Score: 905
Period size: 119 Copynumber: 4.7 Consensus size: 119
82268409 ACATTTATGT
* * *
82268419 TGAAGCAGATCCAAGATGATTTGATATTCTTGTGTTTACAAGAAACATATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * *
82268484 TTTGACTCTCAAACATTCTCAAAGATAACAGATCTAACCTTCAGATGATTATAC
66 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
* * *
82268538 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTATTTATAAGAAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
*
82268603 TTTGACTCTTAGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
66 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
*
82268657 TGAAGTAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * *
82268722 TTTGACTCTCCGACGTTCTCAAAAAATAGCAGATCTAACCTTCAGATGTTTATAC
66 TTTGACTCTCAGACGTTCTC-AAAGATAGCAGATCTAACCTTCAGATGATTATAC
*
82268777 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAGCAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * * * *
82268842 TTTGATTCTCAGACGTTCTCAAATATAGGAGATCTAACCTTCAGATGTTTATAT
66 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
* * *
82268896 TGAAGCAGATCCAAGATGACTTGATATTCTTGTATTTACAAGGAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
*
82268961 TTTGACTCTCAGATGTTCTCAAA
66 TTTGACTCTCAGACGTTCTCAAA
82268984 CAGACTCAAG
Statistics
Matches: 416, Mismatches: 29, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
119 303 0.73
120 113 0.27
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
Found at i:82268858 original size:239 final size:239
Alignment explanation
Indices: 82268419--82268983 Score: 916
Period size: 239 Copynumber: 2.4 Consensus size: 239
82268409 ACATTTATGT
* *
82268419 TGAAGCAGATCCAAGATGATTTGATATTCTTGTGTTTACAAGAAACATATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGATATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * *
82268484 TTTGACTCTCAAACATTCTC-AAAGATAACAGATCTAACCTTCAGATGATTATACTGAAGCAGAT
66 TTTGACTCTCAGACGTTCTCAAAAAATAACAGATCTAACCTTCAGATGATTATACTGAAGCAGAT
* *
82268548 CCAAGATGATTTGGTATTCTTGTATTTATAAGAAACAAATCGAGGACATAGCAGATTTGACTCTT
131 CCAAGATGATTTGGTATTCTTGTATTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTC
82268613 AGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
196 AGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
* *
82268657 TGAAGTAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGATATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * *
82268722 TTTGACTCTCCGACGTTCTCAAAAAATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGAT
66 TTTGACTCTCAGACGTTCTCAAAAAATAACAGATCTAACCTTCAGATGATTATACTGAAGCAGAT
* * * *
82268787 CCAAGATGATTTGGTATTCTTGTGTTTACAAGGAGCAAATCGAGGACATAGCAGATTTGATTCTC
131 CCAAGATGATTTGGTATTCTTGTATTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTC
* * * *
82268852 AGACGTTCTCAAATATAGGAGATCTAACCTTCAGATGTTTATAT
196 AGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
* *
82268896 TGAAGCAGATCCAAGATGACTTGATATTCTTGTATTTACAAGGAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGATATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
*
82268961 TTTGACTCTCAGATGTTCTCAAA
66 TTTGACTCTCAGACGTTCTCAAA
82268984 CAGACTCAAG
Statistics
Matches: 300, Mismatches: 26, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
238 78 0.26
239 222 0.74
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30
Consensus pattern (239 bp):
TGAAGCAGATCCAAGATGATTTGATATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
TTTGACTCTCAGACGTTCTCAAAAAATAACAGATCTAACCTTCAGATGATTATACTGAAGCAGAT
CCAAGATGATTTGGTATTCTTGTATTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTC
AGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
Found at i:82269026 original size:83 final size:83
Alignment explanation
Indices: 82268931--82269176 Score: 357
Period size: 84 Copynumber: 3.0 Consensus size: 83
82268921 ATTCTTGTAT
* * *
82268931 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
82268996 GGTTTGGCATCCTTGTGC
66 GGTTTGGCATCCTTGTGC
* * *
82269014 TTATAAGGAACAAATCAAGGACATTGCAGATATAACTCTCAAATGTTCTCAAACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
* *
82269079 GGTTTAAGCACCCTTGTGC
66 GGTTT-GGCATCCTTGTGC
* * * *
82269098 TTACAAGGAACAAGTCGAGGACCTTGCAGATATGACTCTCAAATGTTTTCAGACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
* *
82269163 GATTTGACATCCTT
66 GGTTTGGCATCCTT
82269177 ACAAATTGAA
Statistics
Matches: 143, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
83 70 0.49
84 73 0.51
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (83 bp):
TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
GGTTTGGCATCCTTGTGC
Found at i:82270704 original size:16 final size:16
Alignment explanation
Indices: 82270683--82270744 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
82270673 TTATTAAAAG
82270683 TATTATTTTAATTATA
1 TATTATTTTAATTATA
*
82270699 TATTATTATTACTTATTATG
1 TATTATT-TTA---ATTATA
** *
82270719 TATTATTTTTCTTAAA
1 TATTATTTTAATTATA
82270735 TATTATTTTA
1 TATTATTTTA
82270745 CATCTCTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
16 19 0.53
17 3 0.08
19 2 0.06
20 12 0.33
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (16 bp):
TATTATTTTAATTATA
Found at i:82270851 original size:44 final size:42
Alignment explanation
Indices: 82270776--82270870 Score: 97
Period size: 44 Copynumber: 2.2 Consensus size: 42
82270766 TATTTTCACA
*
82270776 TATATTATATTTATTAATTATATATATTGTTTTATATGTTAC-TT
1 TATATTATATCTATTAATTATATATATTG-TTTATA--TTACATT
* * *
82270820 TATATTATATCTATTATTTTTCT-TATATGTTTATATTACATT
1 TATATTATATCTATTAATTATATATAT-TGTTTATATTACATT
82270862 T-TATTATAT
1 TATATTATAT
82270871 AATCTTTATT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
41 12 0.27
42 3 0.07
43 9 0.20
44 21 0.47
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (42 bp):
TATATTATATCTATTAATTATATATATTGTTTATATTACATT
Found at i:82272521 original size:16 final size:16
Alignment explanation
Indices: 82272500--82272533 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
82272490 AAAGTTTTAG
82272500 TAAATGACCATATGAA
1 TAAATGACCATATGAA
82272516 TAAATGACCATATGAA
1 TAAATGACCATATGAA
82272532 TA
1 TA
82272534 GTAACTTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (16 bp):
TAAATGACCATATGAA
Found at i:82276121 original size:29 final size:29
Alignment explanation
Indices: 82276055--82276150 Score: 149
Period size: 29 Copynumber: 3.3 Consensus size: 29
82276045 AAGTCTACAT
* *
82276055 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
82276083 TCTTTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
82276112 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
82276141 ACATTCATAT
1 ACATTCATAT
82276151 ACATGCTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 20 0.33
29 41 0.67
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:82276387 original size:16 final size:17
Alignment explanation
Indices: 82276361--82276396 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
82276351 ATAGCCAAAC
82276361 TTTCAAACTTTTCGGTA
1 TTTCAAACTTTTCGGTA
82276378 TTTC-AACTTTTCGGTA
1 TTTCAAACTTTTCGGTA
82276394 TTT
1 TTT
82276397 TGGGATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (17 bp):
TTTCAAACTTTTCGGTA
Found at i:82277998 original size:22 final size:20
Alignment explanation
Indices: 82277964--82278005 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
82277954 CCATTGTTGA
*
82277964 GAAATTGATGAATTAGGCTT
1 GAAATTGATGAATTAAGCTT
82277984 GAAATTGATAAGAATTAAGCTT
1 GAAATTGAT--GAATTAAGCTT
82278006 AGATTATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
22 10 0.53
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.33
Consensus pattern (20 bp):
GAAATTGATGAATTAAGCTT
Found at i:82278735 original size:21 final size:21
Alignment explanation
Indices: 82278711--82278780 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
82278701 ATTTCACGTC
82278711 AATTAATCATTATAATACTCA
1 AATTAATCATTATAATACTCA
* * *
82278732 AATT-AT-ATGAAAACACTTGCAA
1 AATTAATCATTATAATAC-T-C-A
82278754 TCAATTAATCATTATAATACTCA
1 --AATTAATCATTATAATACTCA
82278777 AATT
1 AATT
82278781 GTATGAAAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
19 7 0.19
20 3 0.08
21 9 0.25
22 1 0.03
23 1 0.03
24 5 0.14
25 3 0.08
26 7 0.19
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (21 bp):
AATTAATCATTATAATACTCA
Found at i:82278773 original size:45 final size:45
Alignment explanation
Indices: 82278709--82278799 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
82278699 CGATTTCACG
82278709 TCAATTAATCATTATAATACTCAAATTATATGAAAACACTTGCAA
1 TCAATTAATCATTATAATACTCAAATTATATGAAAACACTTGCAA
*
82278754 TCAATTAATCATTATAATACTCAAATTGTATGAAAACACTTGCAA
1 TCAATTAATCATTATAATACTCAAATTATATGAAAACACTTGCAA
82278799 T
1 T
82278800 AACTTATGTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.34
Consensus pattern (45 bp):
TCAATTAATCATTATAATACTCAAATTATATGAAAACACTTGCAA
Found at i:82279410 original size:29 final size:29
Alignment explanation
Indices: 82279377--82279433 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
82279367 ATATAGTAAT
*
82279377 GCACCAAAGTGCA-ATAATAGAACAGGATA
1 GCACCAAAGTACATAT-ATAGAACAGGATA
* *
82279406 GCACCGAAGTACATATTTAGAACAGGAT
1 GCACCAAAGTACATATATAGAACAGGAT
82279434 GACATCGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 22 0.92
30 2 0.08
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.18
Consensus pattern (29 bp):
GCACCAAAGTACATATATAGAACAGGATA
Found at i:82279442 original size:29 final size:29
Alignment explanation
Indices: 82279394--82279451 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
82279384 AGTGCAATAA
82279394 TAGAACAGGATAGCACCGAAGTACATATT
1 TAGAACAGGATAGCACCGAAGTACATATT
* *
82279423 TAGAACAGGAT-GACATCGAAGTGCATATT
1 TAGAACAGGATAG-CACCGAAGTACATATT
82279452 AAAAATAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (29 bp):
TAGAACAGGATAGCACCGAAGTACATATT
Found at i:82281222 original size:46 final size:46
Alignment explanation
Indices: 82281166--82281335 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
82281156 TGATATGTGT
*
82281166 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTAAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCAAGATGAGA
* * *
82281212 GCTAGTGTAAGACATGTCTGGGACATGCATC-AGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CATCAAGAT-GA-GA
* *
82281260 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACATC-A-AGATGAGA
* * * *
82281309 GCCAGTGTAAGACCTATCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
82281336 ATATCGGCCT
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
45 1 0.01
46 38 0.36
47 1 0.01
48 27 0.26
49 31 0.30
50 3 0.03
51 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.22
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCAAGATGAGA
Found at i:82281282 original size:48 final size:46
Alignment explanation
Indices: 82281166--82281395 Score: 185
Period size: 49 Copynumber: 4.8 Consensus size: 46
82281156 TGATATGTGT
* *
82281166 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTAAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCAAGATGAAA
* *
82281212 GCTAGTGTAAGACATGTCTGGGACATGCATC-AGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CATCAAGAT-GA-AA
* * *
82281260 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACATC-A-AGATGAAA
* * * * * * * *
82281309 GCCAGTGTAAGACCTATCTAGGACATGATATCGGCCTCGATATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGACATC-A-AGATGAAA
* * *
82281358 -ATCAGTGTAAGACTTGTCTGGGACATGGCATCGGCATC
1 GCT-AGTGTAAGACATGTCTGGGACAT-GCATCGACATC
82281396 TTATCCCATG
Statistics
Matches: 149, Mismatches: 25, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 38 0.26
47 1 0.01
48 27 0.18
49 74 0.50
50 4 0.03
51 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCAAGATGAAA
Found at i:82281383 original size:98 final size:95
Alignment explanation
Indices: 82281166--82281390 Score: 274
Period size: 98 Copynumber: 2.3 Consensus size: 95
82281156 TGATATGTGT
** * *
82281166 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACATTAAGATGAGAGCTAGTGTAAGACATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACACGAAGATGAGAGCCAGTGTAAGACATATC
* *
82281230 TGGGACATGCATCAGCCTCAAGATATACAA
66 TAGGACATGCATCAGCCTCAAGATATAAAA
* *
82281260 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACCTA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACA-CGA-AGATGAGAGCCAGTGTAAGACATA
* * * *
82281325 TCTAGGACATGATATCGGCCTCGATATATGAAAA
64 TCTAGGACATG-CATCAGCCTCAAGATAT-AAAA
* *
82281359 TC-AGTGTAAGACTTGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCG
82281391 GCATCTTATC
Statistics
Matches: 112, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
94 25 0.22
95 9 0.08
96 1 0.01
97 31 0.28
98 42 0.38
99 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGACACGAAGATGAGAGCCAGTGTAAGACATATC
TAGGACATGCATCAGCCTCAAGATATAAAA
Found at i:82286118 original size:16 final size:16
Alignment explanation
Indices: 82286097--82286127 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82286087 AACCCAACCC
*
82286097 ATGCAGCATGTCATGT
1 ATGCAGAATGTCATGT
82286113 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
82286128 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:82286328 original size:27 final size:27
Alignment explanation
Indices: 82286295--82286485 Score: 247
Period size: 27 Copynumber: 7.1 Consensus size: 27
82286285 GGTATCTCTG
*
82286295 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
82286322 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
82286349 TAATTCTGCCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
**
82286376 TAATTCTACCCTTTAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
82286403 TAATTCTACCCTACAGGGTTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * * *
82286430 TAATTCTAACTTATAGGGGTATTTTGA
1 TAATTCTACCCTACAGGGGTATTTCGA
82286457 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
82286484 TA
1 TA
82286486 TTTTACAAAT
Statistics
Matches: 139, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:82286531 original size:27 final size:26
Alignment explanation
Indices: 82286389--82286575 Score: 106
Period size: 27 Copynumber: 7.0 Consensus size: 26
82286379 TTCTACCCTT
* **
82286389 TAGGGGTATTTCGATAATTCTACCCTA
1 TAGGGGTATTTCGATAATTTTA-CAAA
* * * * **
82286416 CAGGGTTATTTCAATAATTCTAACTTA
1 TAGGGGTATTTCGATAATT-TTACAAA
* * **
82286443 TAGGGGTATTTTGATAATTCTACCCTA
1 TAGGGGTATTTCGATAATTTTA-CAAA
*
82286470 CAGGGGTATTTCGAT-ATTTTACAAA
1 TAGGGGTATTTCGATAATTTTACAAA
* * *
82286495 TCGAGAGTATTTCGATAATTTCACAAA
1 TAG-GGGTATTTCGATAATTTTACAAA
* * *
82286522 TTAGGGGTATTTTGGTAATTTTACAAGC
1 -TAGGGGTATTTCGATAATTTTACAA-A
* * *
82286550 CAGGGGTATTTTGGTAATTTTACAAA
1 TAGGGGTATTTCGATAATTTTACAAA
82286576 CCTGGAGAAT
Statistics
Matches: 124, Mismatches: 30, Indels: 13
0.74 0.18 0.08
Matches are distributed among these distances:
25 3 0.02
26 17 0.14
27 101 0.81
28 3 0.02
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.39
Consensus pattern (26 bp):
TAGGGGTATTTCGATAATTTTACAAA
Found at i:82286568 original size:54 final size:54
Alignment explanation
Indices: 82286485--82286623 Score: 147
Period size: 54 Copynumber: 2.6 Consensus size: 54
82286475 GTATTTCGAT
* * * * * * *
82286485 ATTTTACAAATC-GAGAGTATTTCGATAATTTCACAAA-TTAGGGGTATTTTGGTA
1 ATTTTACAAACCAGAG-GTATTTTGGTAATTTCACAAACCT-GGAGAATTTTAGTA
* * *
82286539 ATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCTGGAGAATTTTAGTA
1 ATTTTACAAACCAGAGGTATTTTGGTAATTTCACAAACCTGGAGAATTTTAGTA
*
82286593 ATTTTATAAACCAGAGGTATTTTGGTAATTT
1 ATTTTACAAACCAGAGGTATTTTGGTAATTT
82286624 TATTGATCGA
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
54 67 0.96
55 3 0.04
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
ATTTTACAAACCAGAGGTATTTTGGTAATTTCACAAACCTGGAGAATTTTAGTA
Found at i:82286587 original size:27 final size:26
Alignment explanation
Indices: 82286485--82286625 Score: 120
Period size: 27 Copynumber: 5.2 Consensus size: 26
82286475 GTATTTCGAT
* * *
82286485 ATTTTACAAATCGAGAGTATTTCGATA
1 ATTTTACAAACCG-GAGTATTTTGGTA
* ** *
82286512 ATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAA-CCGGAGTATTTTGGTA
* *
82286539 ATTTTACAAGCCAGGGGTATTTTGGTA
1 ATTTTACAAACC-GGAGTATTTTGGTA
* *
82286566 ATTTTACAAACCTGGAGAATTTTAGTA
1 ATTTTACAAACC-GGAGTATTTTGGTA
* *
82286593 ATTTTATAAACCAGAGGTATTTTGGTA
1 ATTTTACAAACCGGA-GTATTTTGGTA
82286620 ATTTTA
1 ATTTTA
82286626 TTGATCGAGG
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
26 2 0.02
27 89 0.96
28 2 0.02
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (26 bp):
ATTTTACAAACCGGAGTATTTTGGTA
Found at i:82286626 original size:27 final size:27
Alignment explanation
Indices: 82286527--82286683 Score: 140
Period size: 27 Copynumber: 5.8 Consensus size: 27
82286517 ACAAATTAGG
* * *
82286527 GGTATTTTGGTAATTTTACAAGCCAGG
1 GGTATTTTGGTAATTTTATAAACCAGA
* *
82286554 GGTATTTTGGTAATTTTACAAACCTG-
1 GGTATTTTGGTAATTTTATAAACCAGA
* *
82286580 GAGAATTTTAGTAATTTTATAAACCAGA
1 G-GTATTTTGGTAATTTTATAAACCAGA
** *
82286608 GGTATTTTGGTAATTTTATTGATC-GA
1 GGTATTTTGGTAATTTTATAAACCAGA
*
82286634 GGGTATTTTGGTAATTTTGTAAACCA-A
1 -GGTATTTTGGTAATTTTATAAACCAGA
** *
82286661 GGGTATTTCAGTAATTTTGTAAA
1 -GGTATTTTGGTAATTTTATAAA
82286684 TTGAGGGTAA
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.03
27 105 0.96
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTATAAACCAGA
Found at i:82286674 original size:81 final size:81
Alignment explanation
Indices: 82286527--82286683 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 81
82286517 ACAAATTAGG
* *
82286527 GGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCTGGAGAATTTTAGT
1 GGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGAGAATTTCAGT
82286592 AATTTTATAAACCAGA
66 AATTTTATAAACCAGA
** * * ** *
82286608 GGTATTTTGGTAATTTTATTGATCGA-GGGTATTTTGGTAATTTTGTAAACCAAGG-GTATTTCA
1 GGTATTTTGGTAATTTTA-CAAGCCAGGGGTATTTTGGTAATTTTACAAACC-AGGAGAATTTCA
*
82286671 GTAATTTTGTAAA
64 GTAATTTTATAAA
82286684 TTGAGGGTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
81 59 0.92
82 5 0.08
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGAGAATTTCAGT
AATTTTATAAACCAGA
Found at i:82286690 original size:54 final size:54
Alignment explanation
Indices: 82286526--82286692 Score: 167
Period size: 54 Copynumber: 3.1 Consensus size: 54
82286516 CACAAATTAG
* * * * *
82286526 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCTG-
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTATAAA-TTGA
* * * ** *
82286580 GAGAATTTTAGTAATTTTATAAACC-AGAGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTATAAACCAAG-GGTATTTTGGTAATTTTATAAATTGA
* ** *
82286634 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTATAAATTGA
82286688 GGGTA
1 GGGTA
82286693 AAAGGGTAAT
Statistics
Matches: 89, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
53 2 0.02
54 85 0.96
55 2 0.02
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTATAAATTGA
Found at i:82286701 original size:27 final size:27
Alignment explanation
Indices: 82286671--82287070 Score: 548
Period size: 27 Copynumber: 14.8 Consensus size: 27
82286661 GGGTATTTCA
* * * *
82286671 GTAATTTTGTAAATTGAGGGTAAAAGG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
82286698 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82286725 GTAATTCTATAATTCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
82286752 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82286779 ATAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
82286806 ATAATTCTATAAATCGAGGGTGAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82286833 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82286860 GTAATTCTATAAATCGAGGGTGAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82286887 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
82286914 GTAATTCTATAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
82286941 GTAATTCTATAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
82286968 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82286995 GTAATTCTATAAATCGCGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
82287022 GCAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82287049 GTAATTCTGTAAATCAAGGGTA
1 GTAATTCTATAAATCGAGGGTA
82287071 TTTTGGTAAT
Statistics
Matches: 336, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 336 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:82289514 original size:25 final size:25
Alignment explanation
Indices: 82289476--82289544 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
82289466 CTCTTTTAAT
*
82289476 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
82289501 AACTGGGGCCAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
82289526 AACTGCGGCAAAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
82289545 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:82289808 original size:27 final size:27
Alignment explanation
Indices: 82289764--82289965 Score: 239
Period size: 27 Copynumber: 7.5 Consensus size: 27
82289754 TTTTACCTAA
* *
82289764 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
82289791 GGGTATTTCGATATTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
82289818 GGGTATTTCGGTAATTCTGCCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
82289845 GGGTATTT-TAGTAATTCTACCCTATAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
82289872 GGGTATTTCGATAATTTTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
82289899 GGTTATTTC-AGTAATTCTACCCTACAA
1 GGGTATTTCGA-TAATTCTACCCTACAG
82289926 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
82289953 GGGTATTTTGATA
1 GGGTATTTCGATA
82289966 TTTTACAAAT
Statistics
Matches: 150, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 147 0.98
28 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:82289821 original size:54 final size:55
Alignment explanation
Indices: 82289762--82289960 Score: 278
Period size: 54 Copynumber: 3.7 Consensus size: 55
82289752 AATTTTACCT
* *
82289762 AAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGA-TATTTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGAGTAATTCTACCCTAC
* * * *
82289816 AAGGGTATTTCGGTAATTCTGCCCTATAGGGGTATTT-TAGTAATTCTACCCTAT
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGAGTAATTCTACCCTAC
* * * *
82289870 AGGGGTATTTCGATAATTTTACCCTACAGGGTTATTTC-AGTAATTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGAGTAATTCTACCCTAC
*
82289924 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
82289961 TGATATTTTA
Statistics
Matches: 125, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 124 0.99
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (55 bp):
AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGAGTAATTCTACCCTAC
Found at i:82289864 original size:81 final size:80
Alignment explanation
Indices: 82289762--82289971 Score: 305
Period size: 81 Copynumber: 2.6 Consensus size: 80
82289752 AATTTTACCT
* *
82289762 AAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGG-TATTT
1 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTT-TACCCTAC-AGGGTTATTT
* * *
82289826 CGGTAATTCTGCCCTAT
64 CAGTAATTCTACCCTAC
* * *
82289843 AGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGATAATTTTACCCTACAGGGTTATTTC
1 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGAT-ATTTTACCCTACAGGGTTATTTC
82289908 AGTAATTCTACCCTAC
65 AGTAATTCTACCCTAC
*
82289924 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGATATTTTAC
1 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTTAC
82289972 AAATCGAGAG
Statistics
Matches: 115, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
80 11 0.10
81 100 0.87
82 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (80 bp):
AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTTACCCTACAGGGTTATTTCA
GTAATTCTACCCTAC
Found at i:82290048 original size:54 final size:54
Alignment explanation
Indices: 82289950--82290172 Score: 245
Period size: 54 Copynumber: 4.1 Consensus size: 54
82289940 TTCTACCCTA
* * * * * *
82289950 CAGGGGTATTTTGAT-ATTTTACAAATC-GAGAGTATTTCGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAAT
* *
82290003 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAT
* **
82290057 CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAT
** * * **
82290111 C-GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAAT
1 CAG-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAT
*
82290165 CAAGGGTA
1 CAGGGGTA
82290173 AAACGGTAAT
Statistics
Matches: 143, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
53 15 0.10
54 127 0.89
55 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAT
Found at i:82290082 original size:81 final size:82
Alignment explanation
Indices: 82289950--82290172 Score: 258
Period size: 81 Copynumber: 2.8 Consensus size: 82
82289940 TTCTACCCTA
* * * * *
82289950 CAGGGGTATTTTGAT-ATTTTACAAATC-GAGAGTA-TTTCGATAATTTCACAAATCAGGGGTAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAG-TAATTTTACAAATCAGGGGTAT
82290012 TTTGGTAATTTTAC-AAGC
64 TTTGGTAATTTTACTAAGC
*
82290030 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTT
* *
82290095 TGGTAATTTTACTGATC
66 TGGTAATTTTACTAAGC
* ** * ** *
82290112 GA-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATCAGGGGTA
82290173 AAACGGTAAT
Statistics
Matches: 123, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
80 14 0.11
81 101 0.82
82 8 0.07
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (82 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTT
TGGTAATTTTACTAAGC
Found at i:82290159 original size:27 final size:27
Alignment explanation
Indices: 82289953--82290172 Score: 217
Period size: 27 Copynumber: 8.2 Consensus size: 27
82289943 TACCCTACAG
* * *
82289953 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * * *
82289979 GAGTATTTCGATAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
82290006 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
82290033 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
82290060 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
82290087 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
**
82290114 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* ** *
82290141 GGGTATTTTAGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
82290168 GGGTA
1 GGGTA
82290173 AAACGGTAAT
Statistics
Matches: 166, Mismatches: 27, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 10 0.06
27 156 0.94
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:82290181 original size:27 final size:27
Alignment explanation
Indices: 82290123--82290246 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 27
82290113 AGGGTATTTT
* ****
82290123 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTGTAAATCAAGGGTAAAAC
*
82290150 AGTAATTTTGTAAATCAAGGGTAAAAC
1 GGTAATTTTGTAAATCAAGGGTAAAAC
* *
82290177 GGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTGTAAATCAAGGGTAAAAC
* * *
82290204 GCTAA-TTTGTAAATCGAGTGTAAAAC
1 GGTAATTTTGTAAATCAAGGGTAAAAC
*
82290230 GGTAATTCTGTAAATCA
1 GGTAATTTTGTAAATCA
82290247 CGGATACTTT
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 23 0.28
27 58 0.72
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTTTGTAAATCAAGGGTAAAAC
Found at i:82290194 original size:81 final size:81
Alignment explanation
Indices: 82290015--82290199 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
82290005 GGGGTATTTT
* * *
82290015 GGTAATTTTAC-AAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTA
1 GGTAATTTTACTAATCGA-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTA
* ****
82290079 CAAACCAGGGGTATTTT
65 CAAACCAAGGGTAAAAC
* ** **
82290096 GGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGT
1 GGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTAC
*
82290161 AAATCAAGGGTAAAAC
66 AAACCAAGGGTAAAAC
*
82290177 GGTAATTTT-GTAAATCGAGGGTA
1 GGTAATTTTACT-AATCGAGGGTA
82290200 AAATGCTAAT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.01
81 82 0.95
82 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (81 bp):
GGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTAC
AAACCAAGGGTAAAAC
Found at i:82290263 original size:53 final size:52
Alignment explanation
Indices: 82290123--82290264 Score: 149
Period size: 53 Copynumber: 2.7 Consensus size: 52
82290113 AGGGTATTTT
* * *
82290123 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAAC
1 GGTAATTTTGTAAATC-AGGGTAATTTGGTAA-TTTGTAAATCAAGGGTAAAAC
** * * *
82290177 GGTAATTTTGTAAATCGAGGGTAAAATGCTAATTTGTAAATCGAGTGTAAAAC
1 GGTAATTTTGTAAATC-AGGGTAATTTGGTAATTTGTAAATCAAGGGTAAAAC
* * *
82290230 GGTAATTCTGTAAATCACGGATACTTTGGTAATTT
1 GGTAATTTTGTAAATCA-GGGTAATTTGGTAATTT
82290265 TACAAATTGA
Statistics
Matches: 72, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
52 1 0.01
53 46 0.64
54 25 0.35
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.35
Consensus pattern (52 bp):
GGTAATTTTGTAAATCAGGGTAATTTGGTAATTTGTAAATCAAGGGTAAAAC
Found at i:82292676 original size:24 final size:25
Alignment explanation
Indices: 82292656--82292725 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
82292646 CTCTTTTAAT
82292656 AACTGGGGCAAAGCCCATTTTGAGA
1 AACTGGGGCAAAGCCCATTTTGAGA
*
82292681 AACTGGGGCAAAGCCCTTTTTG-GTA
1 AACTGGGGCAAAGCCCATTTTGAG-A
* *
82292706 AATTAGGGCAAAGCCC-TTTT
1 AACTGGGGCAAAGCCCATTTT
82292726 AGCACTTCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 5 0.12
25 36 0.88
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCATTTTGAGA
Found at i:82292983 original size:27 final size:27
Alignment explanation
Indices: 82292939--82293113 Score: 210
Period size: 27 Copynumber: 6.5 Consensus size: 27
82292929 TTTTACCCAA
* *
82292939 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
82292966 GGGTATTTCGATATTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
82292993 GGGAATTTCGGTAATTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
82293020 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
* * *
82293047 AGTTATTTC-AGTAACTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
82293074 GGGTTTTTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
82293101 GGGTATTTTGATA
1 GGGTATTTCGATA
82293114 TTTTAAAAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
27 126 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:82292995 original size:54 final size:54
Alignment explanation
Indices: 82292936--82293108 Score: 233
Period size: 54 Copynumber: 3.2 Consensus size: 54
82292926 TAATTTTACC
* *
82292936 CAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA
* *
82292990 CAAGGGAATTTCGGTAATTCTACCCTACAAGGGTATTTC-AGTAATTCTACCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTA
* * * *
82293044 C-AGAGTTATTTCAGTAACTCTACCCTACAGGGGTTTTTCGATAATTCTACCCTA
1 CAAG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA
*
82293098 CAGGGGTATTT
1 CAAGGGTATTT
82293109 TGATATTTTA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
53 3 0.03
54 98 0.95
55 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (54 bp):
CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA
Found at i:82293159 original size:27 final size:27
Alignment explanation
Indices: 82293129--82293306 Score: 212
Period size: 27 Copynumber: 6.6 Consensus size: 27
82293119 AAAATTGAGA
* * * *
82293129 GTATTTCGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
82293156 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
82293183 GTATTTTGGTAATTTTACAAGCCACGG
1 GTATTTTGGTAATTTTACAAACCAGGG
82293210 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* * * *
82293237 TTATTTTGGTAATTTTACTAATCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** *
82293264 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
**
82293291 GTATTTCAGTAATTTT
1 GTATTTTGGTAATTTT
82293307 GTAAATCGAG
Statistics
Matches: 132, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:82293307 original size:27 final size:27
Alignment explanation
Indices: 82293259--82293320 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
82293249 TTTTACTAAT
**
82293259 CAAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAC
*
82293286 CAAGGGTATTTCAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAC
*
82293313 CGAGGGTA
1 CAAGGGTA
82293321 AAACGGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAC
Found at i:82293329 original size:81 final size:81
Alignment explanation
Indices: 82293244--82293526 Score: 284
Period size: 81 Copynumber: 3.5 Consensus size: 81
82293234 GGGTTATTTT
**** * ** *
82293244 GGTAATTTTACT-AATCAAGGGTATTTTGGTAATTTTGTAAACCAAGGGT-ATTTCAGTAATTTT
1 GGTAATTTTA-TAAATCAAGGGTAAAACGGTAATTCTGTAAACCAAGGGTAAAAT-AGTAATTCT
* *
82293307 GTAAATCGAGGGTAAAAC
64 ATAAATCAAGGGTAAAAC
* * * * *
82293325 GGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAT
1 GGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTAT
82293390 AAATCAAGGGTAAAAC
66 AAATCAAGGGTAAAAC
* * * * * *
82293406 GGTAATTTTGTAAATCAAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATT-TAT
1 GGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTAT
* *
82293470 AAATCGAGGGTAAAAT
66 AAATCAAGGGTAAAAC
* * * *
82293486 GGTAATTCTATAAATCGAGGGTAAAATGGTATTTCTGTAAA
1 GGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAA
82293527 TCGATGGTAC
Statistics
Matches: 171, Mismatches: 29, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
80 52 0.30
81 117 0.68
82 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
GGTAATTTTATAAATCAAGGGTAAAACGGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTAT
AAATCAAGGGTAAAAC
Found at i:82293543 original size:27 final size:27
Alignment explanation
Indices: 82293299--82293535 Score: 332
Period size: 27 Copynumber: 8.8 Consensus size: 27
82293289 GGGTATTTCA
* * *
82293299 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
82293326 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
82293353 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
82293380 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * *
82293407 GTAATTTTGTAAATCAAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
82293434 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
82293461 GTAATT-TATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
82293487 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
82293514 GTATTTCTGTAAATCGATGGTA
1 GTAATTCTATAAATCGAGGGTA
82293536 CTTTGGTAAT
Statistics
Matches: 191, Mismatches: 18, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
26 26 0.14
27 165 0.86
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:82309536 original size:17 final size:18
Alignment explanation
Indices: 82309509--82309542 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82309499 AATTAAATAT
82309509 ATGCTTATTAAATTATTA
1 ATGCTTATTAAATTATTA
*
82309527 ATGC-TATTAATTTATT
1 ATGCTTATTAAATTATT
82309543 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (18 bp):
ATGCTTATTAAATTATTA
Found at i:82326477 original size:15 final size:16
Alignment explanation
Indices: 82326449--82326478 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
82326439 CTCTTGCTAT
82326449 GTGGAAATTGAGTTCG
1 GTGGAAATTGAGTTCG
82326465 GTGGAAA-TGAGTTC
1 GTGGAAATTGAGTTC
82326479 AACTAGGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.07, G:0.37, T:0.30
Consensus pattern (16 bp):
GTGGAAATTGAGTTCG
Found at i:82339809 original size:24 final size:24
Alignment explanation
Indices: 82339782--82339831 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
82339772 TATTCGAGAT
82339782 GTTCACAAAGAACCACATCGGGAA
1 GTTCACAAAGAACCACATCGGGAA
*
82339806 GTTCACAAAGAACCATATCGGGAA
1 GTTCACAAAGAACCACATCGGGAA
82339830 GT
1 GT
82339832 CTGAATAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (24 bp):
GTTCACAAAGAACCACATCGGGAA
Found at i:82345943 original size:12 final size:12
Alignment explanation
Indices: 82345926--82345951 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82345916 ATAAACTAAG
82345926 TTTTAATTTAGT
1 TTTTAATTTAGT
82345938 TTTTAATTTAGT
1 TTTTAATTTAGT
82345950 TT
1 TT
82345952 ACTACAGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTTTAATTTAGT
Found at i:82348890 original size:24 final size:23
Alignment explanation
Indices: 82348859--82348903 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
82348849 TCCTATCCCA
82348859 TTCATCTCTCTT-TTCTCTCCTTT
1 TTCATCTCTCTTCTTC-CTCCTTT
82348882 TTCATTCTCTCTTCTTCCTCCT
1 TTCA-TCTCTCTTCTTCCTCCT
82348904 CTCGAAAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 4 0.20
24 13 0.65
25 3 0.15
ACGTcount: A:0.04, C:0.38, G:0.00, T:0.58
Consensus pattern (23 bp):
TTCATCTCTCTTCTTCCTCCTTT
Found at i:82349953 original size:9 final size:9
Alignment explanation
Indices: 82349939--82349968 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
82349929 GTTAAAGTAT
82349939 TAATTAAAC
1 TAATTAAAC
*
82349948 TAATTAAAT
1 TAATTAAAC
82349957 TAATTAAAC
1 TAATTAAAC
82349966 TAA
1 TAA
82349969 ACTAACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAC
Found at i:82354009 original size:25 final size:26
Alignment explanation
Indices: 82353975--82354023 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
82353965 ATTATGTTAA
* *
82353975 AAATTTTATTCAATTATAA-ATTATT
1 AAATTATATTCAATAATAATATTATT
*
82354000 AAATTATATTTAATAATAATATTA
1 AAATTATATTCAATAATAATATTA
82354024 AGATATGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
AAATTATATTCAATAATAATATTATT
Found at i:82354036 original size:34 final size:34
Alignment explanation
Indices: 82353997--82354074 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
82353987 ATTATAAATT
* *
82353997 ATTAAATTATATTTAATAATAATATTAAGATATG
1 ATTAAATTATATTTAATAATAATATAAAAATATG
82354031 ATTAAATTATATTTAATAATAATATAAAAATATG
1 ATTAAATTATATTTAATAATAATATAAAAATATG
82354065 ATTAAATTAT
1 ATTAAATTAT
82354075 TTATTATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (34 bp):
ATTAAATTATATTTAATAATAATATAAAAATATG
Found at i:82385524 original size:20 final size:20
Alignment explanation
Indices: 82385501--82385538 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
82385491 ATGCTTAAGG
*
82385501 GAATGTGTAAATCTGGAAGT
1 GAATGAGTAAATCTGGAAGT
*
82385521 GAATGAGTAAATTTGGAA
1 GAATGAGTAAATCTGGAA
82385539 ATAATAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.29, T:0.29
Consensus pattern (20 bp):
GAATGAGTAAATCTGGAAGT
Found at i:82392889 original size:5 final size:5
Alignment explanation
Indices: 82392873--82392907 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
82392863 AAATTATTAA
82392873 GCCCG AGCCCG GCCCG GCCCG GCCCG GCCCG GCCC
1 GCCCG -GCCCG GCCCG GCCCG GCCCG GCCCG GCCC
82392908 ATATTAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.03, C:0.60, G:0.37, T:0.00
Consensus pattern (5 bp):
GCCCG
Found at i:82393007 original size:22 final size:22
Alignment explanation
Indices: 82392973--82393024 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
82392963 TCAAATATAT
82392973 TTAAAA-AACATAAAAACAAATA
1 TTAAAACAACATAAAAA-AAATA
*
82392995 TTAAAACAA-ATAAAAATAATA
1 TTAAAACAACATAAAAAAAATA
*
82393016 CTAAAACAA
1 TTAAAACAA
82393025 TTTTTAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 12 0.44
22 13 0.48
23 2 0.07
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (22 bp):
TTAAAACAACATAAAAAAAATA
Found at i:82393009 original size:21 final size:20
Alignment explanation
Indices: 82392977--82393024 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
82392967 ATATATTTAA
* *
82392977 AAAACATAAAAACA-AATATT
1 AAAACA-AAAAAAATAATACT
82392997 AAAACAAATAAAAATAATACT
1 AAAACAAA-AAAAATAATACT
82393018 AAAACAA
1 AAAACAA
82393025 TTTTTAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 10 0.42
21 12 0.50
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (20 bp):
AAAACAAAAAAAATAATACT
Found at i:82398868 original size:91 final size:91
Alignment explanation
Indices: 82398749--82398934 Score: 336
Period size: 91 Copynumber: 2.0 Consensus size: 91
82398739 TATTATTGAA
*
82398749 ATATGTGAATTTTACTTAATTAGTAATTTTATAAATGAATTTGGAAAGTATGTGAAATTATGCTT
1 ATATGTGAATTTTACTTAATTAGTAATTTTAGAAATGAATTTGGAAAGTATGTGAAATTATGCTT
*
82398814 AATTGCATGATTTTCATGCATCTTTT
66 AATTGCATGATTTTCATGCATATTTT
*
82398840 ATATGTGAATTTTACTTAATTAGTAATTTTAGACATGAATTTGGAAAGTATGTGAAATTATGCTT
1 ATATGTGAATTTTACTTAATTAGTAATTTTAGAAATGAATTTGGAAAGTATGTGAAATTATGCTT
*
82398905 AATTTCATGATTTTCATGCATATTTT
66 AATTGCATGATTTTCATGCATATTTT
82398931 ATAT
1 ATAT
82398935 TAATTCATGT
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.46
Consensus pattern (91 bp):
ATATGTGAATTTTACTTAATTAGTAATTTTAGAAATGAATTTGGAAAGTATGTGAAATTATGCTT
AATTGCATGATTTTCATGCATATTTT
Found at i:82400531 original size:10 final size:10
Alignment explanation
Indices: 82400516--82400540 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
82400506 TCTCGAAAAT
82400516 AGCTAGATTA
1 AGCTAGATTA
82400526 AGCTAGATTA
1 AGCTAGATTA
82400536 AGCTA
1 AGCTA
82400541 TTACGATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (10 bp):
AGCTAGATTA
Found at i:82400716 original size:13 final size:13
Alignment explanation
Indices: 82400700--82400728 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
82400690 TAATTTTTTT
82400700 TTTATTTTTCATC
1 TTTATTTTTCATC
82400713 TTTATTTTTCATC
1 TTTATTTTTCATC
82400726 TTT
1 TTT
82400729 CCAATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTTTTCATC
Found at i:82402890 original size:43 final size:43
Alignment explanation
Indices: 82402809--82402891 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
82402799 TGGGAAAACG
* **
82402809 CCGCTATAGAACATGATCTTTAGCGGTGCTTTTATTACAATCA
1 CCGCTAAAGAACATGATCTTTAGCGGCACTTTTATTACAATCA
* * * *
82402852 CCGCTAAAGAACATGATTTTTAGTGGCATTTTTTTTACAA
1 CCGCTAAAGAACATGATCTTTAGCGGCACTTTTATTACAA
82402892 ACGCTGTAAG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (43 bp):
CCGCTAAAGAACATGATCTTTAGCGGCACTTTTATTACAATCA
Found at i:82417264 original size:42 final size:42
Alignment explanation
Indices: 82417155--82417298 Score: 135
Period size: 42 Copynumber: 3.3 Consensus size: 42
82417145 AGGAAACTCA
* * * * * *
82417155 CACACTTAGTGCCAAATAAATAGCCGAAGCTGTATCAATCTTG
1 CACACTAAGTG-CAAATATATAGCCGAAGCTATCTCGATCTCG
* *
82417198 CAGACTAAGTGCCAATTTATATATATAGCCGAAGCTATCTTGATCTCG
1 CACACTAAGTG-C-A---A-ATATATAGCCGAAGCTATCTCGATCTCG
* *
82417246 CACAGTAAGTGCAAATATATAGCCGAAGCTATCTCGATTTCG
1 CACACTAAGTGCAAATATATAGCCGAAGCTATCTCGATCTCG
82417288 CACACTAAGTG
1 CACACTAAGTG
82417299 ACATAATTAG
Statistics
Matches: 83, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
42 36 0.43
43 12 0.14
44 1 0.01
46 1 0.01
47 2 0.02
48 31 0.37
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (42 bp):
CACACTAAGTGCAAATATATAGCCGAAGCTATCTCGATCTCG
Found at i:82417542 original size:33 final size:33
Alignment explanation
Indices: 82417500--82417564 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
82417490 TTCTTGATCT
82417500 ATATGTAATCAAAATTAAATTATTTAATTATCC
1 ATATGTAATCAAAATTAAATTATTTAATTATCC
82417533 ATATGTAATCAAAATTAAATTATTTAATTATC
1 ATATGTAATCAAAATTAAATTATTTAATTATC
82417565 TCAGTATTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (33 bp):
ATATGTAATCAAAATTAAATTATTTAATTATCC
Found at i:82421716 original size:14 final size:14
Alignment explanation
Indices: 82421697--82421736 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
82421687 TTGTTTGTTG
*
82421697 GGAAAATAGTTTCC
1 GGAAAATAATTTCC
*
82421711 GGAAAATAATTTCT
1 GGAAAATAATTTCC
*
82421725 GGAAAATGATTT
1 GGAAAATAATTT
82421737 ACTTTTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (14 bp):
GGAAAATAATTTCC
Found at i:82421755 original size:19 final size:19
Alignment explanation
Indices: 82421728--82421765 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
82421718 AATTTCTGGA
*
82421728 AAATGATTTACTTTTTTGG
1 AAATAATTTACTTTTTTGG
82421747 AAATAATTTACTTTTTTGG
1 AAATAATTTACTTTTTTGG
82421766 TGTTTTGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (19 bp):
AAATAATTTACTTTTTTGG
Found at i:82426080 original size:47 final size:47
Alignment explanation
Indices: 82425875--82426192 Score: 280
Period size: 47 Copynumber: 6.7 Consensus size: 47
82425865 GGGATAAGTT
*
82425875 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCAAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACTCATC-TCGAG
* * * * * *
82425924 GCTGATGCCATATCCCAGACATGGTCTTACACTAGCT-CTAGTATATACG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACT--CATCT-CGAG
* * * *
82425974 GCTGATGCATGTCCCAGACGTGTCTTACACTAGC-AC-AACTCTC-A-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACTCA-TCTCGAG
* *
82426018 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACTCATC-TCGAG
* * *
82426065 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCATCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACTCATCTCGAG
* *
82426111 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG-TACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACTCAT-CTCGAG
82426159 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
82426193 ACACAAGAAA
Statistics
Matches: 224, Mismatches: 27, Indels: 38
0.78 0.09 0.13
Matches are distributed among these distances:
44 31 0.14
45 6 0.03
46 26 0.12
47 64 0.29
48 38 0.17
49 48 0.21
50 8 0.04
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACTCATCTCGAG
Found at i:82426163 original size:141 final size:140
Alignment explanation
Indices: 82425875--82426192 Score: 367
Period size: 141 Copynumber: 2.2 Consensus size: 140
82425865 GGGATAAGTT
* *
82425875 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCAAGGCTGATGCCATATCCC
1 GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCAAGGCCGATGCCATATCCC
* * *
82425940 AGACATGGTCTTACACTAGCTCTAGTATATACGTGCTGATGCATGTCCCAGACGTGTCTTACACT
64 AGACATGGTCTTACACTAGCACTAGTATATACG-GCCGATGCATGTCCCAGACATGTCTTACACT
*
82426005 AGCACAACTCTCA
128 AGCACAAATCTCA
* * * *
82426018 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTATCATCGTCGAGGCCGATG-CATGTCCCAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCAAGGCCGATGCCATATCCCAG
* *
82426082 ACAT-GTCTTACACTAGCACTCA-TCTCTAC-GCCGATGCCATGTCCCAGACATGGTCTTACACT
66 ACATGGTCTTACACTAGCACT-AGTATATACGGCCGATG-CATGTCCCAGACAT-GTCTTACACT
* * * *
82426144 GGTACTCATAATGT-G
128 AG--CACA-AATCTCA
*
82426159 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGC
82426193 ACACAAGAAA
Statistics
Matches: 151, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
137 6 0.04
138 13 0.09
139 31 0.21
140 14 0.09
141 64 0.42
142 16 0.11
143 7 0.05
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (140 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCAAGGCCGATGCCATATCCCAG
ACATGGTCTTACACTAGCACTAGTATATACGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
ACAAATCTCA
Found at i:82426174 original size:94 final size:94
Alignment explanation
Indices: 82425875--82426189 Score: 342
Period size: 94 Copynumber: 3.3 Consensus size: 94
82425865 GGGATAAGTT
* * * * *
82425875 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCAAGGCTGATGCCATATCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATCATC-TCTACGCCGATGCCATGTCCC
*
82425940 AGACATGGTCTTACACTAG--CTCTAGTATATACGT-
62 AGACATGGTCTTACACTGGTACTC-A-TA-AT-CGTG
* * *
82425974 GCTGATGCATGTCCCAGACGTGTCTTACACTAGCA-CAACTCT-CAGCCGATG-CATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCATCTCTAC-GCCGATGCCATGTCCCAGA
* * ** *
82426036 CA-CGTCTTACATTGGCTA-TCATCGTCGAG
65 CATGGTCTTACACTGG-TACTCATAATCGTG
82426065 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCA-TCATCTCTACGCCGATGCCATGTCCCAGA
82426130 CATGGTCTTACACTGGTACTCATAAT-GTG
65 CATGGTCTTACACTGGTACTCATAATCGTG
82426159 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
82426190 GGCACACAAG
Statistics
Matches: 183, Mismatches: 22, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
90 2 0.01
91 34 0.19
92 11 0.06
93 26 0.14
94 59 0.32
95 19 0.10
96 1 0.01
97 12 0.07
98 13 0.07
99 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (94 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCATCTCTACGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGGTACTCATAATCGTG
Found at i:82426928 original size:12 final size:12
Alignment explanation
Indices: 82426911--82426935 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82426901 CAAAAATGTA
82426911 AAAATCATCAAG
1 AAAATCATCAAG
82426923 AAAATCATCAAG
1 AAAATCATCAAG
82426935 A
1 A
82426936 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:82429708 original size:46 final size:45
Alignment explanation
Indices: 82429636--82429807 Score: 145
Period size: 46 Copynumber: 3.7 Consensus size: 45
82429626 AACCCGCCCC
* *
82429636 TAAGTGAACTCGGACTCAACTTAACGAGTTCGGGCGTTCGCATCCA
1 TAAGTGAACT-TGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
82429682 TAAGTGAACTTAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTT-GACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * * *
82429730 TCA-CGAACTCGTACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTTG-ACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
82429775 TAAGTGAACTCTGACTCAACTCAACGAGTTCGG
1 TAAGTGAACT-TGACTCAACTCAACGAGTTCGG
82429808 ATGCTCAACC
Statistics
Matches: 98, Mismatches: 16, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 55 0.56
47 25 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (45 bp):
TAAGTGAACTTGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:82429800 original size:93 final size:93
Alignment explanation
Indices: 82429641--82429811 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
82429631 GCCCCTAAGT
* * * *
82429641 GAACTCGGACTCAACTTAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTTAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTTAGACTCAACTCAA
82429706 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
82429734 GAACTCGTACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCT-GACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACT-TAGACTCAACTCA
82429798 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
82429812 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTTAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82433272 original size:30 final size:30
Alignment explanation
Indices: 82433238--82433298 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
82433228 CATTTAATAC
82433238 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
82433268 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
82433298 A
1 A
82433299 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:82435769 original size:46 final size:46
Alignment explanation
Indices: 82435702--82435873 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
82435692 AACCCGCCCC
*
82435702 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
82435748 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
82435796 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
82435841 TAAGTAAACTCTGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
82435874 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 58 0.56
47 28 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:82435814 original size:93 final size:93
Alignment explanation
Indices: 82435707--82435877 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
82435697 GCCCCTAAGT
* * *
82435707 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
82435772 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
82435800 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTAAACTCTGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
82435865 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82435878 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82436329 original size:30 final size:30
Alignment explanation
Indices: 82436295--82436354 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82436285 ATTTAATACG
82436295 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
82436325 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
82436355 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:82437802 original size:20 final size:20
Alignment explanation
Indices: 82437774--82437816 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
82437764 AATATAAATA
* *
82437774 AAAACTTATAATTATTTTTT
1 AAAACTTATAATGAATTTTT
* *
82437794 AAAAGTTATTATGAATTTTT
1 AAAACTTATAATGAATTTTT
82437814 AAA
1 AAA
82437817 GTCGGAACAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (20 bp):
AAAACTTATAATGAATTTTT
Found at i:82438794 original size:93 final size:93
Alignment explanation
Indices: 82438687--82438857 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
82438677 GCCCCTAAGT
* *
82438687 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82438752 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
82438780 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82438845 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82438858 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:82438854 original size:46 final size:46
Alignment explanation
Indices: 82438682--82438854 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
82438672 AACCCGCCCC
* * *
82438682 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
82438728 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
82438776 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
82438821 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82438855 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:82442861 original size:24 final size:24
Alignment explanation
Indices: 82442834--82442918 Score: 127
Period size: 24 Copynumber: 3.5 Consensus size: 24
82442824 GAAATGATTT
82442834 TGGCACTATGTGTGCGAATTTG-A
1 TGGCACTATGTGTGCGAATTTGTA
82442857 CTGGCACTATGTGTGCGAATTTGTA
1 -TGGCACTATGTGTGCGAATTTGTA
* *
82442882 TGGCACTATGTGTGTGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
*
82442906 TAGCACTATGTGT
1 TGGCACTATGTGT
82442919 ACAGATTGGA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
24 56 0.98
25 1 0.02
ACGTcount: A:0.20, C:0.13, G:0.29, T:0.38
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGTA
Found at i:82449212 original size:17 final size:17
Alignment explanation
Indices: 82449166--82449218 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
82449156 GCTTTTTATA
82449166 AAAATAGATTATATAAT-T
1 AAAATA-ATT-TATAATAT
*
82449184 GAAAT-ATGTTATAATAT
1 AAAATAAT-TTATAATAT
82449201 AAAATAATTTATAATAT
1 AAAATAATTTATAATAT
82449218 A
1 A
82449219 TTAAGTGGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
16 8 0.27
17 16 0.53
18 6 0.20
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.40
Consensus pattern (17 bp):
AAAATAATTTATAATAT
Found at i:82450484 original size:24 final size:24
Alignment explanation
Indices: 82450392--82450476 Score: 152
Period size: 24 Copynumber: 3.5 Consensus size: 24
82450382 GAAATGATTT
*
82450392 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGTA
82450416 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
*
82450440 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
82450464 TGGCACTATGTGT
1 TGGCACTATGTGT
82450477 ACGGATTTCA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.20, C:0.13, G:0.31, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGTA
Found at i:82450497 original size:24 final size:24
Alignment explanation
Indices: 82450392--82450498 Score: 79
Period size: 24 Copynumber: 4.5 Consensus size: 24
82450382 GAAATGATTT
* * * *
82450392 TGGCACTATGTGTGCGAATTTGAA
1 TGGCAATATGTGTACGGATTTCAA
* * * **
82450416 TGGCACTATGTGTGCGAATTTGTA
1 TGGCAATATGTGTACGGATTTCAA
* * **
82450440 TGGCACTATGTGTGCGGATTTGTA
1 TGGCAATATGTGTACGGATTTCAA
*
82450464 TGGCACTATGTGTACGGATTTCAA
1 TGGCAATATGTGTACGGATTTCAA
*
82450488 TGTCAATATGT
1 TGGCAATATGT
82450499 ATGTGAATTA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 76 1.00
ACGTcount: A:0.22, C:0.13, G:0.28, T:0.36
Consensus pattern (24 bp):
TGGCAATATGTGTACGGATTTCAA
Found at i:82450498 original size:48 final size:48
Alignment explanation
Indices: 82450392--82450507 Score: 133
Period size: 48 Copynumber: 2.4 Consensus size: 48
82450382 GAAATGATTT
* * **
82450392 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTA
1 TGGCAATATGTGTGCGAATTTGAATGGCACTATGTGTACGAATTTCAA
* * * *
82450440 TGGCACTATGTGTGCGGATTTGTATGGCACTATGTGTACGGATTTCAA
1 TGGCAATATGTGTGCGAATTTGAATGGCACTATGTGTACGAATTTCAA
* * *
82450488 TGTCAATATGTATGTGAATT
1 TGGCAATATGTGTGCGAATT
82450508 ACTAAGGAAC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.37
Consensus pattern (48 bp):
TGGCAATATGTGTGCGAATTTGAATGGCACTATGTGTACGAATTTCAA
Found at i:82450520 original size:72 final size:72
Alignment explanation
Indices: 82450392--82450528 Score: 166
Period size: 72 Copynumber: 1.9 Consensus size: 72
82450382 GAAATGATTT
* * * * ** * *
82450392 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTATGGCACTATGTGTGCGG
1 TGGCACTATGTGTACGAATTTCAATGGCAATATGTATGCGAATTACTAAGGAACTATGTGTGCGG
82450457 ATTTGTA
66 ATTTGTA
* * * *
82450464 TGGCACTATGTGTACGGATTTCAATGTCAATATGTATGTGAATTACTAAGGAACTATTTGTGCGG
1 TGGCACTATGTGTACGAATTTCAATGGCAATATGTATGCGAATTACTAAGGAACTATGTGTGCGG
82450529 GTTAACATGG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
72 53 1.00
ACGTcount: A:0.24, C:0.12, G:0.28, T:0.36
Consensus pattern (72 bp):
TGGCACTATGTGTACGAATTTCAATGGCAATATGTATGCGAATTACTAAGGAACTATGTGTGCGG
ATTTGTA
Found at i:82454771 original size:27 final size:28
Alignment explanation
Indices: 82454687--82454784 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
82454677 CATGAGATTG
* * * * *
82454687 GCACTAAGTGTGTGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
82454716 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
82454744 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
82454771 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
82454785 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.35
29 17 0.27
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:82454798 original size:29 final size:27
Alignment explanation
Indices: 82454715--82454798 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
82454705 TAAATTGTAC
* *
82454715 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
82454743 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
82454770 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
82454799 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:82476932 original size:38 final size:38
Alignment explanation
Indices: 82476881--82477031 Score: 187
Period size: 38 Copynumber: 4.0 Consensus size: 38
82476871 AATAAGTCTA
* * * * *
82476881 AATAACACCAGCACTAAGCCTGCTAAGTACTAAGCCAG
1 AATAACACTAGCACTAAGCCTACTAGGCACTAAGCCTG
* *
82476919 AATAACACTAGCACTAAGCTTACTAGGCACAAAGCCTG
1 AATAACACTAGCACTAAGCCTACTAGGCACTAAGCCTG
*
82476957 AATAACAC-CGACACTAAGCCTACTAGGCACTAAGCCTG
1 AATAACACTAG-CACTAAGCCTACTAGGCACTAAGCCTG
* * *
82476995 AATAACACTGGCATTAAGCCTGCTAGGCACTAAGCCT
1 AATAACACTAGCACTAAGCCTACTAGGCACTAAGCCT
82477032 ACTAGGCACA
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
37 1 0.01
38 96 0.98
39 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.17, T:0.18
Consensus pattern (38 bp):
AATAACACTAGCACTAAGCCTACTAGGCACTAAGCCTG
Found at i:82476989 original size:16 final size:16
Alignment explanation
Indices: 82476968--82477047 Score: 70
Period size: 16 Copynumber: 4.6 Consensus size: 16
82476958 ATAACACCGA
82476968 CACTAAGCCTACTAGG
1 CACTAAGCCTACTAGG
*
82476984 CACTAAGCCTGAATAACACTGG
1 CACTAAGCCT-ACT---A--GG
* *
82477006 CATTAAGCCTGCTAGG
1 CACTAAGCCTACTAGG
82477022 CACTAAGCCTACTAGG
1 CACTAAGCCTACTAGG
*
82477038 CACAAAGCCT
1 CACTAAGCCT
82477048 GAGTAACATC
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
16 35 0.69
17 2 0.04
18 1 0.02
20 1 0.02
21 1 0.02
22 11 0.22
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.19
Consensus pattern (16 bp):
CACTAAGCCTACTAGG
Found at i:82477026 original size:54 final size:54
Alignment explanation
Indices: 82476968--82477085 Score: 184
Period size: 54 Copynumber: 2.2 Consensus size: 54
82476958 ATAACACCGA
* *
82476968 CACTAAGCCTACTAGGCACTAAGCCTGAATAACA-CTGGCATTAAGCCTGCTAGG
1 CACTAAGCCTACTAGGCACAAAGCCTGAATAACATC-GGCACTAAGCCTGCTAGG
* *
82477022 CACTAAGCCTACTAGGCACAAAGCCTGAGTAACATCGGTACTAAGCCTGCTAGG
1 CACTAAGCCTACTAGGCACAAAGCCTGAATAACATCGGCACTAAGCCTGCTAGG
82477076 CACTAAGCCT
1 CACTAAGCCT
82477086 GAATAACACT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
54 58 0.98
55 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.19
Consensus pattern (54 bp):
CACTAAGCCTACTAGGCACAAAGCCTGAATAACATCGGCACTAAGCCTGCTAGG
Found at i:82477027 original size:92 final size:92
Alignment explanation
Indices: 82476929--82477123 Score: 309
Period size: 92 Copynumber: 2.1 Consensus size: 92
82476919 AATAACACTA
*
82476929 GCACTAAGCTTACTAGGCACAAAGCCTGAATAACACCGACACTAAGCCTACTAGGCACTAAGCCT
1 GCACTAAGCCTACTAGGCACAAAGCCTGAATAACACCGACACTAAGCCTACTAGGCACTAAGCCT
* *
82476994 GAATAACACTGGCATTAAGCCTGCTAG
66 GAATAACACTGACACTAAGCCTGCTAG
* * ** *
82477021 GCACTAAGCCTACTAGGCACAAAGCCTGAGTAACATCGGTACTAAGCCTGCTAGGCACTAAGCCT
1 GCACTAAGCCTACTAGGCACAAAGCCTGAATAACACCGACACTAAGCCTACTAGGCACTAAGCCT
82477086 GAATAACACTGACACTAAGCCTGCTAG
66 GAATAACACTGACACTAAGCCTGCTAG
*
82477113 GCACAAAGCCT
1 GCACTAAGCCT
82477124 GAATAATAGT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 94 1.00
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.18
Consensus pattern (92 bp):
GCACTAAGCCTACTAGGCACAAAGCCTGAATAACACCGACACTAAGCCTACTAGGCACTAAGCCT
GAATAACACTGACACTAAGCCTGCTAG
Found at i:82477065 original size:38 final size:38
Alignment explanation
Indices: 82477022--82477129 Score: 155
Period size: 38 Copynumber: 2.8 Consensus size: 38
82477012 GCCTGCTAGG
* * *
82477022 CACTAAGCCTACTAGGCACAAAGCCTGAGTAACA-TCGG
1 CACTAAGCCTGCTAGGCACAAAGCCTGAATAACACT-GA
* *
82477060 TACTAAGCCTGCTAGGCACTAAGCCTGAATAACACTGA
1 CACTAAGCCTGCTAGGCACAAAGCCTGAATAACACTGA
82477098 CACTAAGCCTGCTAGGCACAAAGCCTGAATAA
1 CACTAAGCCTGCTAGGCACAAAGCCTGAATAA
82477130 TAGTACGATT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 61 0.98
39 1 0.02
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (38 bp):
CACTAAGCCTGCTAGGCACAAAGCCTGAATAACACTGA
Found at i:82491200 original size:14 final size:13
Alignment explanation
Indices: 82491168--82491193 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82491158 TCTAAGTAAA
82491168 AAAAATTCTTTTC
1 AAAAATTCTTTTC
82491181 AAAAATTCTTTTC
1 AAAAATTCTTTTC
82491194 TCTAAATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (13 bp):
AAAAATTCTTTTC
Found at i:82503304 original size:19 final size:19
Alignment explanation
Indices: 82503282--82503319 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
82503272 TAAAAAGCCT
*
82503282 ATAAAATTTAAAAAAATAA
1 ATAAAAATTAAAAAAATAA
*
82503301 ATAAAAATTAAAAATATAA
1 ATAAAAATTAAAAAAATAA
82503320 GTAATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAAAAATTAAAAAAATAA
Found at i:82503540 original size:25 final size:25
Alignment explanation
Indices: 82503492--82503541 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
82503482 TTTTAATTAA
*
82503492 TTTATATATTTTATTTTTTAAAAAT
1 TTTATATATTTTATTATTTAAAAAT
*
82503517 TTTATATATTTT-TTAATTTCAAAAT
1 TTTATATATTTTATT-ATTTAAAAAT
82503542 AATAATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (25 bp):
TTTATATATTTTATTATTTAAAAAT
Found at i:82504288 original size:22 final size:22
Alignment explanation
Indices: 82504259--82504318 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 22
82504249 TAAAATTAAT
82504259 TAATTATAATAACATAT-GAAA
1 TAATTATAATAACATATGGAAA
* *
82504280 TAATGTAT-ACAACTTATGGAAA
1 TAAT-TATAATAACATATGGAAA
*
82504302 TAATAAATAAT-ACATAT
1 TAAT-TATAATAACATAT
82504319 TAAAATAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
21 11 0.37
22 18 0.60
23 1 0.03
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (22 bp):
TAATTATAATAACATATGGAAA
Found at i:82505352 original size:20 final size:20
Alignment explanation
Indices: 82505327--82505376 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
82505317 TGGCTTAAAA
82505327 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
82505347 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
82505364 GTGGTAGTGGATT
1 TTGGTAGTGGATT
82505377 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:82509991 original size:20 final size:20
Alignment explanation
Indices: 82509966--82510015 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
82509956 TGGCTTAAAA
82509966 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
82509986 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
82510003 GTGGTAGTGGATT
1 TTGGTAGTGGATT
82510016 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:82515086 original size:48 final size:48
Alignment explanation
Indices: 82515004--82515146 Score: 171
Period size: 48 Copynumber: 3.0 Consensus size: 48
82514994 ATTCGAGAGT
* * *
82515004 CTCGCACCCT-AAGTGCCTATCTCATGGCCCGAAGCCAAATCTATGTAA
1 CTCGCA-CCTGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAA
* * *
82515052 CTCGCACCTGAAGTGCCGATATCATTGCCTGAAGCGAAATCAATGTAA
1 CTCGCACCTGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAA
* * * * *
82515100 CTTGCACCCGAAGTGTCGGTATCATGGCCCGAAGCTAAATCAATGTA
1 CTCGCACCTGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTA
82515147 TTCCCTAATG
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
47 3 0.04
48 78 0.96
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (48 bp):
CTCGCACCTGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAA
Found at i:82518288 original size:155 final size:154
Alignment explanation
Indices: 82518001--82518615 Score: 739
Period size: 155 Copynumber: 4.0 Consensus size: 154
82517991 GATTGAGTAT
* * *
82518001 TAGCGGCGCTTTATCAAAAACGCCGCTATAGG-TTGAGTATT-GGAGGTGTTTTTAAGAAAGGGC
1 TAGCGGCACTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGCA-GTGTTTTTAAGAAAGCGC
* * * *
82518064 CGCTATAGGTCGACCTATAGCGGCGTTTTTATAAAAATGCCACTAAAAGATTAAGTCGAACGACG
65 CGCTATAGGTCGACCTATAGCGGCG-TTTTATAAAAACGCCACTAAAAGATTAAGCCGAACGGCA
82518129 TCGTTTATTGTGAGCTTCAGTGTCAA
129 TCGTTTATTGTGAGCTTCAGTGTCAA
* * * * *** * * * *
82518155 TAGTGGCGCTTTATTAAAAACGCCGCTA-ATGCTCAAACCTA-TAGCGGTGTTTTTGATAAAGCG
1 TAGCGGCACTTTATCAAAAACGCCGCTATA-GGTTTGA-GTATTAGCAGTGTTTTTAAGAAAGCG
* * * * * *
82518218 CCACTATAGGTCGACCTATAGTGGCGTTTTCATAAAAACACCATTAAAAAATTAAGCCAAACGGC
64 CCGCTATAGGTCGACCTATAGCGGCGTTTT-ATAAAAACGCCACTAAAAGATTAAGCCGAACGGC
82518283 ATCGTTTATTGTGAGCTTCAGTGTCAA
128 ATCGTTTATTGTGAGCTTCAGTGTCAA
* * * *
82518310 TAGCGGCACTTTATCAAAAACACCACTATAGGTTTGAGTATTAGCAATATTTTTAAGAAAGCGCC
1 TAGCGGCACTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGCAGTGTTTTTAAGAAAGCGCC
* * * *
82518375 GTTATAGGTCTACCTCAT-------TTTTGTAAAAACGCCACTAATAGATTAAGCCGAACGGCAT
66 GCTATAGGTCGACCT-ATAGCGGCGTTTTATAAAAACGCCACTAAAAGATTAAGCCGAACGGCAT
82518433 CGTTTATTGTGAGCTTCAGTGTCAA
130 CGTTTATTGTGAGCTTCAGTGTCAA
*
82518458 TAGCGGCACTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGCAGCGTTTTTAAGAAAGCGCC
1 TAGCGGCACTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGCAGTGTTTTTAAGAAAGCGCC
* * **
82518523 GCTATAGGTCGACCTATTGCGGCGTTTGTATAAAAACGCCGCTAAAAGATTAAGCCGAACGGTGT
66 GCTATAGGTCGACCTATAGCGGCGTTT-TATAAAAACGCCACTAAAAGATTAAGCCGAACGGCAT
* *
82518588 CGTTTATTTTGAGCTTCAGTGGCAA
130 CGTTTATTGTGAGCTTCAGTGTCAA
82518613 TAG
1 TAG
82518616 ATCTAAACTA
Statistics
Matches: 385, Mismatches: 60, Indels: 31
0.81 0.13 0.07
Matches are distributed among these distances:
147 2 0.01
148 128 0.33
149 4 0.01
153 1 0.00
154 36 0.09
155 208 0.54
156 6 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (154 bp):
TAGCGGCACTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGCAGTGTTTTTAAGAAAGCGCC
GCTATAGGTCGACCTATAGCGGCGTTTTATAAAAACGCCACTAAAAGATTAAGCCGAACGGCATC
GTTTATTGTGAGCTTCAGTGTCAA
Found at i:82518563 original size:40 final size:39
Alignment explanation
Indices: 82518473--82518566 Score: 102
Period size: 40 Copynumber: 2.3 Consensus size: 39
82518463 GCACTTTATC
* *
82518473 AAAAACGCCGCTATAGGTTTGAGTATTAGCAGCGTTTTT
1 AAAAACGCCGCTATAGGTTCGACTATTAGCAGCGTTTTT
*
82518512 AAGAAAGCGCCGCTATAGG-TCGACCTATT-GCGGCGTTTGTAT
1 AA-AAA-CGCCGCTATAGGTTCGA-CTATTAGCAGCGTTT-T-T
82518554 AAAAACGCCGCTA
1 AAAAACGCCGCTA
82518567 AAAGATTAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
39 2 0.04
40 22 0.47
41 20 0.43
42 3 0.06
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (39 bp):
AAAAACGCCGCTATAGGTTCGACTATTAGCAGCGTTTTT
Found at i:82519069 original size:21 final size:21
Alignment explanation
Indices: 82519043--82519095 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
82519033 ACCAAAATTT
82519043 TAAACCTTAAGTCTCAAACCA
1 TAAACCTTAAGTCTCAAACCA
*
82519064 TAAACCCTAAGTCTCAAACCA
1 TAAACCTTAAGTCTCAAACCA
82519085 TAAACCCTTAA
1 TAAA-CCTTAA
82519096 AACTCTAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 24 0.83
22 5 0.17
ACGTcount: A:0.43, C:0.30, G:0.04, T:0.23
Consensus pattern (21 bp):
TAAACCTTAAGTCTCAAACCA
Found at i:82519489 original size:8 final size:7
Alignment explanation
Indices: 82519442--82519489 Score: 51
Period size: 7 Copynumber: 6.4 Consensus size: 7
82519432 AGGTTTATGC
82519442 ATGGTTT
1 ATGGTTT
*
82519449 AGGGTATAT
1 ATGGT-T-T
82519458 ATGGTTT
1 ATGGTTT
*
82519465 AAGGTTT
1 ATGGTTT
82519472 ATGGTTT
1 ATGGTTT
82519479 ATGGATTT
1 ATGG-TTT
82519487 ATG
1 ATG
82519490 ACGAGTTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
7 21 0.62
8 8 0.24
9 5 0.15
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.48
Consensus pattern (7 bp):
ATGGTTT
Done.