Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 25 of 316
Found at i:7105079 original size:54 final size:54
Alignment explanation
Indices: 7105016--7105269 Score: 472
Period size: 54 Copynumber: 4.7 Consensus size: 54
7105006 ATGTGACCCG
*
7105016 AGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
7105070 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
7105124 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
*
7105178 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAA
*
7105233 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7105270 TTGAAAAGCA
Statistics
Matches: 195, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
54 157 0.81
55 38 0.19
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
Found at i:7105288 original size:14 final size:14
Alignment explanation
Indices: 7105269--7105304 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
7105259 AGTTGATTTT
7105269 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
7105283 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
7105297 ATTGAAAA
1 TTTGAAAA
7105305 TACCTCAGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.06, G:0.19, T:0.22
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:7105402 original size:73 final size:73
Alignment explanation
Indices: 7105283--7105431 Score: 235
Period size: 73 Copynumber: 2.0 Consensus size: 73
7105273 AAAAGCAGAA
** *
7105283 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATG
*
7105348 AGTTGATT
66 AGTTAATT
* * *
7105356 TTTGAAAAGCATAAATTGAAATTACCTCAGCGTACCCCGAGGCTCAACTCACTTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATG
7105421 AGTTAATT
66 AGTTAATT
7105429 TTT
1 TTT
7105432 TTTTGAAAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (73 bp):
TTTGAAAAGCAGAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATT
Found at i:7106311 original size:4 final size:4
Alignment explanation
Indices: 7106302--7106354 Score: 88
Period size: 4 Copynumber: 12.8 Consensus size: 4
7106292 TGATCCCTCT
7106302 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTTC TTTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTTC -TTTC
7106352 TTT
1 TTT
7106355 TTTTTAAGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 39 0.81
5 9 0.19
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:7113838 original size:12 final size:12
Alignment explanation
Indices: 7113810--7113845 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
7113800 TGGGATATGC
*
7113810 AATGAATGAATG
1 AATGCATGAATG
7113822 AATGCATGAATG
1 AATGCATGAATG
*
7113834 AATGCATAAATG
1 AATGCATGAATG
7113846 TCAAATGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.47, C:0.06, G:0.22, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:7118499 original size:18 final size:18
Alignment explanation
Indices: 7118476--7118527 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
7118466 CACTAAGACT
7118476 TATAATAAATACAATAAA
1 TATAATAAATACAATAAA
*
7118494 TATAATAAATACAA-ATAT
1 TATAATAAATACAATA-AA
7118512 TATAATAAATA-AATAA
1 TATAATAAATACAATAA
7118528 CAGAAAATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 4 0.13
18 27 0.87
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
TATAATAAATACAATAAA
Found at i:7119026 original size:16 final size:16
Alignment explanation
Indices: 7118984--7119029 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
7118974 AAAGAAAAAA
*
7118984 AAAAGAGAGAAGGGAG
1 AAAAGAGAGAGGGGAG
7119000 AAAAGAGAGAGGGGAG
1 AAAAGAGAGAGGGGAG
*
7119016 AAAGGAGAGAGGGG
1 AAAAGAGAGAGGGG
7119030 TTCCGGCCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (16 bp):
AAAAGAGAGAGGGGAG
Found at i:7119913 original size:16 final size:16
Alignment explanation
Indices: 7119884--7119916 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7119874 AACCTTTTAT
7119884 ATTTTAAAACAAAATC
1 ATTTTAAAACAAAATC
7119900 ATTTATAAAA-AAAATC
1 ATTT-TAAAACAAAATC
7119916 A
1 A
7119917 CTTTGGTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTTTAAAACAAAATC
Found at i:7123433 original size:20 final size:19
Alignment explanation
Indices: 7123404--7123442 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
7123394 TTTTATTTCA
*
7123404 AAAAATTTAATGATTAAAT
1 AAAAATTTAATAATTAAAT
7123423 AAAAATATTAATAATTAAAT
1 AAAAAT-TTAATAATTAAAT
7123443 GACTAAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (19 bp):
AAAAATTTAATAATTAAAT
Found at i:7124903 original size:20 final size:21
Alignment explanation
Indices: 7124878--7124919 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
7124868 TATTTTAATC
7124878 ATTTAACTATT-AATTTTTTT
1 ATTTAACTATTAAATTTTTTT
*
7124898 ATTTAATTATTAAATTTTTTT
1 ATTTAACTATTAAATTTTTTT
7124919 A
1 A
7124920 AATTAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTAACTATTAAATTTTTTT
Found at i:7124925 original size:22 final size:20
Alignment explanation
Indices: 7124880--7124930 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
7124870 TTTTAATCAT
* *
7124880 TTAACTATTAATTTTTTTAT
1 TTAAATATTAATTTTTTTAA
*
7124900 TTAATTATTAAATTTTTTTAAA
1 TTAAATATT-AATTTTTTT-AA
7124922 TTAAATATT
1 TTAAATATT
7124931 TTAGTCACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 8 0.31
21 9 0.35
22 9 0.35
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTAAATATTAATTTTTTTAA
Found at i:7125782 original size:22 final size:20
Alignment explanation
Indices: 7125748--7125801 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
7125738 TATTTAATTT
*
7125748 TGAAAAATATAATGATTAAA
1 TGAAAAATATAATAATTAAA
*
7125768 TGAAAATATATTAATAATTAAG
1 TGAAAA-ATA-TAATAATTAAA
7125790 TGACAAAA-ATAA
1 TGA-AAAATATAA
7125802 AACTAACTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 9 0.31
21 4 0.14
22 13 0.45
23 3 0.10
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (20 bp):
TGAAAAATATAATAATTAAA
Found at i:7129648 original size:33 final size:33
Alignment explanation
Indices: 7129600--7129666 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
7129590 AAGATATCGG
7129600 TTCGCCAATTCAATCAATTCAATTAATTTGTTT
1 TTCGCCAATTCAATCAATTCAATTAATTTGTTT
* *
7129633 TTCGTCAATTTAATCAATTCAATTAATTTGTTT
1 TTCGCCAATTCAATCAATTCAATTAATTTGTTT
7129666 T
1 T
7129667 ATTTTAGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.15, G:0.06, T:0.49
Consensus pattern (33 bp):
TTCGCCAATTCAATCAATTCAATTAATTTGTTT
Found at i:7130288 original size:31 final size:31
Alignment explanation
Indices: 7130222--7130288 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
7130212 ATTTTAAATT
* * *
7130222 TTAAAAAATATAGAGACTAAAATTGACTAAT
1 TTAAAAAATACAGAGACTAAAATTAACTAAA
* *
7130253 TTAAAAAATACATG-GACTAAATTTAATTAAA
1 TTAAAAAATACA-GAGACTAAAATTAACTAAA
7130284 TTAAA
1 TTAAA
7130289 TTACAATAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.55, C:0.06, G:0.07, T:0.31
Consensus pattern (31 bp):
TTAAAAAATACAGAGACTAAAATTAACTAAA
Found at i:7132641 original size:50 final size:50
Alignment explanation
Indices: 7132579--7132678 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
7132569 ACACCCATGG
*
7132579 TTAATACGTAGGTACATTTGTTCACTGACAATGCAGTGACTATTGGCAAT
1 TTAATACATAGGTACATTTGTTCACTGACAATGCAGTGACTATTGGCAAT
*
7132629 TTAATACATAGGTACATTTGTTCACTGACAGTGCAGTGACTATTGGCAAT
1 TTAATACATAGGTACATTTGTTCACTGACAATGCAGTGACTATTGGCAAT
7132679 GAAAGTGCTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (50 bp):
TTAATACATAGGTACATTTGTTCACTGACAATGCAGTGACTATTGGCAAT
Found at i:7135283 original size:20 final size:20
Alignment explanation
Indices: 7135258--7135313 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
7135248 ACATACATTT
* *
7135258 TTTGTTCTGTTATGTTCTGC
1 TTTGTTATGTTTTGTTCTGC
*
7135278 TTTGTTATGTTTTGCTCTGC
1 TTTGTTATGTTTTGTTCTGC
* *
7135298 TCTGTTTTGTTTTGTT
1 TTTGTTATGTTTTGTT
7135314 ATGTTCTGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.04, C:0.12, G:0.20, T:0.64
Consensus pattern (20 bp):
TTTGTTATGTTTTGTTCTGC
Found at i:7135285 original size:15 final size:15
Alignment explanation
Indices: 7135265--7135336 Score: 65
Period size: 15 Copynumber: 4.8 Consensus size: 15
7135255 TTTTTTGTTC
7135265 TGTTATGTTCTGCTT
1 TGTTATGTTCTGCTT
* *
7135280 TGTTATGTTTTGCTC
1 TGTTATGTTCTGCTT
* * * *
7135295 TGCTCTGTTTTGTTT
1 TGTTATGTTCTGCTT
*
7135310 TGTTATGTTCTGATT
1 TGTTATGTTCTGCTT
7135325 TGTCT-TGTTCTG
1 TGT-TATGTTCTG
7135337 GTTGGGTTGT
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
15 45 0.98
16 1 0.02
ACGTcount: A:0.06, C:0.12, G:0.21, T:0.61
Consensus pattern (15 bp):
TGTTATGTTCTGCTT
Found at i:7135321 original size:20 final size:20
Alignment explanation
Indices: 7135257--7135333 Score: 55
Period size: 20 Copynumber: 3.6 Consensus size: 20
7135247 AACATACATT
*
7135257 TTTTGTTCTGTTATGTTCTG
1 TTTTGTTTTGTTATGTTCTG
* * *
7135277 CTTTGTTATGTTTTGCTCTGCTCTG
1 ---T-TT-TGTTTTGTTATGTTCTG
7135302 TTTTGTTTTGTTATGTTCTG
1 TTTTGTTTTGTTATGTTCTG
* *
7135322 ATTTGTCTTGTT
1 TTTTGTTTTGTT
7135334 CTGGTTGGGT
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
20 24 0.56
21 2 0.05
22 1 0.02
23 1 0.02
24 2 0.05
25 13 0.30
ACGTcount: A:0.05, C:0.12, G:0.19, T:0.64
Consensus pattern (20 bp):
TTTTGTTTTGTTATGTTCTG
Found at i:7140176 original size:30 final size:30
Alignment explanation
Indices: 7140142--7140203 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
7140132 ATTTATTTAA
7140142 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAGAGGCAT
*
7140172 TTGTTAATTTTGTTATTATTTTAGATGCAT
1 TTGTTAATTTTGTTATTATTTTAGAGGCAT
7140202 TT
1 TT
7140204 ACTTGTTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.23, C:0.03, G:0.15, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAGGCAT
Found at i:7140817 original size:4 final size:4
Alignment explanation
Indices: 7140803--7140842 Score: 62
Period size: 4 Copynumber: 9.5 Consensus size: 4
7140793 TCTTTTTTTC
7140803 TTTA TTTTA TTTA TTTA TTTTA TTTA TTTA TTTA TTTA TT
1 TTTA -TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TT
7140843 ATTATTAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 26 0.76
5 8 0.24
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:7140819 original size:13 final size:13
Alignment explanation
Indices: 7140803--7140842 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
7140793 TCTTTTTTTC
7140803 TTTATTTTATTTA
1 TTTATTTTATTTA
7140816 TTTATTTTATTTA
1 TTTATTTTATTTA
7140829 TTTA-TTTATTTA
1 TTTATTTTATTTA
7140841 TT
1 TT
7140843 ATTATTAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 10 0.37
13 17 0.63
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:7140894 original size:24 final size:25
Alignment explanation
Indices: 7140866--7140938 Score: 84
Period size: 24 Copynumber: 3.1 Consensus size: 25
7140856 AAAATTTTGA
7140866 AATATATA-TTTGAAATATTTTATT
1 AATATATATTTTGAAATATTTTATT
**
7140890 AATATATATTTTTTAA-ATTTTA--
1 AATATATATTTTGAAATATTTTATT
7140912 AATATATATTTTGAAATTATTTT-TT
1 AATATATATTTTGAAA-TATTTTATT
7140937 AA
1 AA
7140939 ATTTTAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
22 14 0.35
24 19 0.47
25 7 0.17
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (25 bp):
AATATATATTTTGAAATATTTTATT
Found at i:7140915 original size:22 final size:22
Alignment explanation
Indices: 7140856--7140927 Score: 83
Period size: 22 Copynumber: 3.1 Consensus size: 22
7140846 ATTAACTTTA
7140856 AAAATTTTGAAATATATA-TTTG
1 AAAATTTT-AAATATATATTTTG
*
7140878 AAATATTTTATTAATATATATTTTT
1 AAA-ATTTTA--AATATATATTTTG
*
7140903 TAAATTTTAAATATATATTTTG
1 AAAATTTTAAATATATATTTTG
7140925 AAA
1 AAA
7140928 TTATTTTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
22 18 0.43
23 5 0.12
24 14 0.33
25 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (22 bp):
AAAATTTTAAATATATATTTTG
Found at i:7140936 original size:26 final size:26
Alignment explanation
Indices: 7140860--7140940 Score: 77
Period size: 22 Copynumber: 3.3 Consensus size: 26
7140850 ACTTTAAAAA
*
7140860 TTTTGAAATATATA-TTTGAAA-TAT
1 TTTTTAAATATATATTTTGAAATTAT
*
7140884 TTTATT-AATATATATTTT----TTAA
1 TTT-TTAAATATATATTTTGAAATTAT
*
7140906 ATTTTAAATATATATTTTGAAATTAT
1 TTTTTAAATATATATTTTGAAATTAT
7140932 TTTTTAAAT
1 TTTTTAAAT
7140941 TTTAAATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
21 2 0.05
22 16 0.36
24 11 0.25
25 4 0.09
26 11 0.25
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTTTAAATATATATTTTGAAATTAT
Found at i:7140955 original size:12 final size:13
Alignment explanation
Indices: 7140859--7140940 Score: 54
Period size: 13 Copynumber: 6.7 Consensus size: 13
7140849 AACTTTAAAA
7140859 ATTTTGAAATATAT
1 ATTTT-AAATATAT
*
7140873 ATTTGAAATAT-T
1 ATTTTAAATATAT
7140885 -TTATT-AATATAT
1 ATT-TTAAATATAT
*
7140897 ATTTT---T-TAA
1 ATTTTAAATATAT
7140906 ATTTTAAATATAT
1 ATTTTAAATATAT
7140919 ATTTTGAAAT-TAT
1 ATTTT-AAATATAT
*
7140932 TTTTTAAAT
1 ATTTTAAAT
7140941 TTTAAATATT
Statistics
Matches: 55, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
9 7 0.13
10 1 0.02
11 7 0.13
12 10 0.18
13 22 0.40
14 8 0.15
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
ATTTTAAATATAT
Found at i:7140965 original size:32 final size:32
Alignment explanation
Indices: 7140895--7140965 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 32
7140885 TTATTAATAT
7140895 ATATTTTTTAAATTTTAAATATATATTTTGAA
1 ATATTTTTTAAATTTTAAATATATATTTTGAA
*
7140927 ATTATTTTTTAAATTTTAAATAT-TATTTTTTAA
1 A-TATTTTTTAAATTTTAAATATATA-TTTTGAA
7140960 ATATTT
1 ATATTT
7140966 AAATATTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (32 bp):
ATATTTTTTAAATTTTAAATATATATTTTGAA
Found at i:7140966 original size:22 final size:21
Alignment explanation
Indices: 7140919--7140972 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
7140909 TTAAATATAT
*
7140919 ATTTTGAA-ATTATTTTTTAA
1 ATTTTAAATATTATTTTTTAA
7140939 ATTTTAAATATTATTTTTTAA
1 ATTTTAAATATTATTTTTTAA
7140960 ATATTTAAATATT
1 AT-TTTAAATATT
7140973 TTAAACTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 7 0.23
21 14 0.45
22 10 0.32
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTTAAATATTATTTTTTAA
Found at i:7141384 original size:22 final size:23
Alignment explanation
Indices: 7141345--7141401 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
7141335 GAAAGTTTAA
7141345 AATATTT-AAATATCTAAAAAAT
1 AATATTTAAAATATCTAAAAAAT
* *
7141367 AATATTTAAAAT-TTTAAAAAGT
1 AATATTTAAAATATCTAAAAAAT
*
7141389 AAT-TTCAAAATAT
1 AATATTTAAAATAT
7141402 ATATTTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 7 0.23
22 19 0.63
23 4 0.13
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.39
Consensus pattern (23 bp):
AATATTTAAAATATCTAAAAAAT
Found at i:7141408 original size:26 final size:24
Alignment explanation
Indices: 7141379--7141459 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
7141369 TATTTAAAAT
7141379 TTTAAAAAGTAATTTCAAAATATATA
1 TTTAAAAA-T-ATTTCAAAATATATA
**
7141405 TTT-AAAAT-TTAAAAAATATATA
1 TTTAAAAATATTTCAAAATATATA
*
7141427 TTAATAAAATATTTC-AAATATATA
1 TTTA-AAAATATTTCAAAATATATA
*
7141451 TTTCAAAAT
1 TTTAAAAAT
7141460 TTTTAAAGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
22 14 0.31
23 5 0.11
24 17 0.38
25 6 0.13
26 3 0.07
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (24 bp):
TTTAAAAATATTTCAAAATATATA
Found at i:7141423 original size:20 final size:22
Alignment explanation
Indices: 7141389--7141430 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
7141379 TTTAAAAAGT
*
7141389 AATTTCAAAATATATAT-TTAA
1 AATTTCAAAAAATATATATTAA
7141410 AATTT-AAAAAATATATATTAA
1 AATTTCAAAAAATATATATTAA
7141431 TAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AATTTCAAAAAATATATATTAA
Found at i:7141492 original size:10 final size:9
Alignment explanation
Indices: 7141470--7141504 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 9
7141460 TTTTAAAGTT
7141470 AATAATAATA
1 AATAA-AATA
7141480 AATAAAATAA
1 AATAAAAT-A
7141490 AATAAAATA
1 AATAAAATA
7141499 AATAAA
1 AATAAA
7141505 GAAAAAAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 10 0.42
10 14 0.58
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AATAAAATA
Found at i:7146882 original size:13 final size:13
Alignment explanation
Indices: 7146864--7146906 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
7146854 AGTAAGTGAT
7146864 TTTTGTAGGAATA
1 TTTTGTAGGAATA
7146877 TTTTGTA--AATA
1 TTTTGTAGGAATA
7146888 -TTT-TAGGAATA
1 TTTTGTAGGAATA
7146899 TTTTGTAG
1 TTTTGTAG
7146907 ATATTTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
9 2 0.08
10 3 0.12
11 8 0.31
12 3 0.12
13 10 0.38
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.51
Consensus pattern (13 bp):
TTTTGTAGGAATA
Found at i:7146895 original size:22 final size:22
Alignment explanation
Indices: 7146869--7146913 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
7146859 GTGATTTTTG
7146869 TAGGAATATTTTGTAAATATTT
1 TAGGAATATTTTGTAAATATTT
*
7146891 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTTTGTAAATATTT
7146913 T
1 T
7146914 CTTTATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (22 bp):
TAGGAATATTTTGTAAATATTT
Found at i:7150676 original size:22 final size:22
Alignment explanation
Indices: 7150648--7150692 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7150638 AGGGGGAGTG
7150648 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
7150670 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
7150692 T
1 T
7150693 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:7153539 original size:15 final size:15
Alignment explanation
Indices: 7153519--7153549 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7153509 CTCTTGTAAG
7153519 ATACTTTATTTTGAA
1 ATACTTTATTTTGAA
7153534 ATACTTTATTTTGAA
1 ATACTTTATTTTGAA
7153549 A
1 A
7153550 CTTTAAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (15 bp):
ATACTTTATTTTGAA
Found at i:7157348 original size:12 final size:12
Alignment explanation
Indices: 7157331--7157356 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7157321 TCAACTCCAG
7157331 TTTATATATATA
1 TTTATATATATA
7157343 TTTATATATATA
1 TTTATATATATA
7157355 TT
1 TT
7157357 GCCCCCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTATATATATA
Found at i:7159215 original size:6 final size:5
Alignment explanation
Indices: 7159178--7159220 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
7159168 CTGTCTACAC
* *
7159178 AAAGA AGAAGG AAA-A AAAGA AAAGA AAAGA AAAGG AAAGA AAA
1 AAAGA A-AAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAA
7159221 TTTGCAGAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
4 3 0.09
5 25 0.78
6 4 0.12
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:7161879 original size:18 final size:18
Alignment explanation
Indices: 7161856--7161897 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
7161846 TAATAGATTT
7161856 TTAATTTAATAAATTT-AA
1 TTAATTTAA-AAATTTAAA
*
7161874 TTAATTTTAAAATTTAAA
1 TTAATTTAAAAATTTAAA
7161892 TTAATT
1 TTAATT
7161898 ACACCTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TTAATTTAAAAATTTAAA
Found at i:7163022 original size:20 final size:20
Alignment explanation
Indices: 7162994--7163036 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
7162984 AAAATTAACA
*
7162994 AAAATATATATAATGATT-GT
1 AAAAGATATAT-ATGATTAGT
7163014 AAAAGATATATATGATTAGT
1 AAAAGATATATATGATTAGT
7163034 AAA
1 AAA
7163037 TATTAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (20 bp):
AAAAGATATATATGATTAGT
Found at i:7163540 original size:19 final size:19
Alignment explanation
Indices: 7163479--7163541 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
7163469 AGAAATTATA
7163479 AAAATATTATAAAAATTTAT
1 AAAATATTATAAAAATTT-T
* * *
7163499 ATAA-GTTATTAAAATTATT
1 AAAATATTATAAAAATT-TT
*
7163518 -AAATCTTATAAAAATTTT
1 AAAATATTATAAAAATTTT
7163536 AAAATA
1 AAAATA
7163542 CTCCTTTTAT
Statistics
Matches: 33, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
18 4 0.12
19 25 0.76
20 4 0.12
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATATTATAAAAATTTT
Found at i:7167977 original size:56 final size:56
Alignment explanation
Indices: 7167902--7168009 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
7167892 AATATAAATT
* *
7167902 CTGTTCATGAGTCAGATCATCTGTTAAGTTTATAATTATAATTTTAATATTAGATA
1 CTGTTCATGAGTCAGATCATCTGTTAAGTTAATAATTATAACTTTAATATTAGATA
* * * * *
7167958 CTGTTTATGGGTCAGATCATTTGTTAGGTTAATAATTATGACTTTAATATTA
1 CTGTTCATGAGTCAGATCATCTGTTAAGTTAATAATTATAACTTTAATATTA
7168010 AGTACGATTT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.45
Consensus pattern (56 bp):
CTGTTCATGAGTCAGATCATCTGTTAAGTTAATAATTATAACTTTAATATTAGATA
Found at i:7178858 original size:38 final size:38
Alignment explanation
Indices: 7178807--7178929 Score: 185
Period size: 38 Copynumber: 3.2 Consensus size: 38
7178797 AGCACTCGAT
*
7178807 ATATATCCGGGTTAAGTCCCGCAGGCTTCATGCTGGTA
1 ATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTA
*
7178845 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTA
* *
7178883 ATATATCCGGGTTAAATCCTGCAAGCTT-AGTGCTGGTA
1 ATATATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTA
*
7178921 TTATATCCG
1 ATATATCCG
7178930 AGCTTAAAGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 78 1.00
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (38 bp):
ATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTA
Found at i:7186323 original size:3 final size:3
Alignment explanation
Indices: 7186310--7186395 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
7186300 GAGGGCATAT
7186310 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
7186354 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7186396 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7186334 original size:12 final size:12
Alignment explanation
Indices: 7186310--7186392 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
7186300 GAGGGCATAT
7186310 ATAATAT-AATA
1 ATAATATAAATA
7186321 ATAATATAAATA
1 ATAATATAAATA
7186333 ATAATATATACATGA
1 ATAATATA-A-AT-A
7186348 GA-AATA-ATAATA
1 -ATAATATA-AATA
7186360 ATAATATAAATA
1 ATAATATAAATA
* *
7186372 ATAGTAAAAATA
1 ATAATATAAATA
*
7186384 ATAAAATAA
1 ATAATATAA
7186393 TAAAACAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:7186354 original size:21 final size:18
Alignment explanation
Indices: 7186315--7186395 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
7186305 CATATATAAT
*
7186315 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
7186333 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
7186354 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
7186372 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
7186389 ATAATAA
1 ATAATAA
7186396 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:7186383 original size:27 final size:27
Alignment explanation
Indices: 7186310--7186396 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
7186300 GAGGGCATAT
* *
7186310 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
7186336 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
7186360 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
7186387 A-AATAATAAA
1 ATAAT-ATAAA
7186397 ACAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:7186757 original size:22 final size:22
Alignment explanation
Indices: 7186726--7186777 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
7186716 TTTTTTCCAA
*
7186726 AAAAATAAAAAAAAACACCTCC
1 AAAAACAAAAAAAAACACCTCC
* *
7186748 AAAAACAAAAAAAACCTCCTCC
1 AAAAACAAAAAAAAACACCTCC
7186770 -AAAACAAA
1 AAAAACAAA
7186778 GAACAATCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.67, C:0.25, G:0.00, T:0.08
Consensus pattern (22 bp):
AAAAACAAAAAAAAACACCTCC
Found at i:7186796 original size:23 final size:21
Alignment explanation
Indices: 7186727--7186796 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 21
7186717 TTTTTCCAAA
* * *
7186727 AAAATAAAAAAAAACACCTCC
1 AAAACAAAAAAAACCTCCTCC
7186748 AAAAACAAAAAAAACCTCCTCC
1 -AAAACAAAAAAAACCTCCTCC
* *
7186770 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAA-AA-AAACCTCCTCC
7186793 AAAA
1 AAAA
7186797 AACCAAAAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
21 8 0.20
22 20 0.49
23 13 0.32
ACGTcount: A:0.60, C:0.27, G:0.01, T:0.11
Consensus pattern (21 bp):
AAAACAAAAAAAACCTCCTCC
Found at i:7186963 original size:4 final size:4
Alignment explanation
Indices: 7186954--7186980 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7186944 GGCCAAAGTT
7186954 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
7186981 TTTGTGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:7187347 original size:44 final size:45
Alignment explanation
Indices: 7187284--7187783 Score: 411
Period size: 44 Copynumber: 11.4 Consensus size: 45
7187274 TGCTTCACTG
* * * * * *
7187284 TAAGCACAGGAATGTCAAATTTGCTATCTTCGATC-CGTTCCTTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * * *
7187328 TAAGCACAGGGATCCCAAATCTGCTGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * * *
7187372 TAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTAGTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGATATCTTCGATCTTGTTCCCTA
* * * * * *
7187416 TAAGCACAAGAATGTCAGATCTGTTATCTTCGATC-CGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * *
7187460 TAAGCACAGGGATGCCAAATCTGTTGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * *
7187504 TAAGCACAGGGATGCCAAATCTGATGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * *
7187548 TAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGATATCTTCGATCTTG-TTCCCTA
* * * * *
7187592 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATC-CGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * *
7187636 TAAGCACAGGGATGCCAAATCTGATGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * * *
7187680 TAAGCACAGGAATGCCAAATCTGATGTTTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
* * *
7187724 TAAGCACAGGGATGCC--ATGCTAAAATCTTC-AACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAAT-CTGATATCTTCGATCTTGTTCCCTA
*
7187767 TAAGTACAGGGATGCCA
1 TAAGCACAGGGATGCCA
7187784 TGCTGAAATC
Statistics
Matches: 377, Mismatches: 65, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
42 6 0.02
43 57 0.15
44 284 0.75
45 26 0.07
46 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (45 bp):
TAAGCACAGGGATGCCAAATCTGATATCTTCGATCTTGTTCCCTA
Found at i:7187501 original size:132 final size:131
Alignment explanation
Indices: 7187264--7187842 Score: 503
Period size: 132 Copynumber: 4.4 Consensus size: 131
7187254 GATATCCGCT
* * * *
7187264 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAAATTTGCTATCTTCGATCCGTTCCTTAT
1 ATCTTCGATCTG-TTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCGATCCGTTCCCTAT
* * * *
7187329 AAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTC-ATGCT
65 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAT-CT
7187393 GAA
129 GAA
* * *
7187396 ATCTTCGATCTAGTTCACTGTAAGCACAAGAATGTCAGATCTGTTATCTTCGATCCGTTCCCTAT
1 ATCTTCGATCT-GTTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCGATCCGTTCCCTAT
* * *
7187461 AAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
65 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCC-AATCT
*
7187526 GAT
129 GAA
* * * * * * * * * * *
7187529 GTTTTC-AACTTGTTCCCTATAAGCACAGGGATG-C-CATGCTGAAATCTTTGATCTGCTTCACT
1 ATCTTCGATC-TGTTCACTGTAAGCACAGGAATGTCAAAT-CTGATATCTTCGATCCG-TTCCCT
* * * * * *
7187591 GTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTTCCCTATAAGCACAGGGATGCCAAA
63 ATAAGCACAGGGATGCCAAATCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGCC-AA
*
7187655 TCTGAT
126 TCTGAA
* * * * * * * * * *
7187661 GTTTTC-AACTTGTTCCCTATAAGCACAGGAATGCCAAATCTGATGTTTTC-AACTTGTTCCCTA
1 ATCTTCGATC-TGTTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCGATC-CGTTCCCTA
*** *
7187724 TAAGCACAGGGATGCC--ATGCTAAAATCTTCAACTTGTTCCCTATAAGTACAGGGATGCC-ATG
64 TAAGCACAGGGATGCCAAAT-CTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAT-
7187786 CTGAA
127 CTGAA
** * *
7187791 ATCTAGGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
1 ATCTTCGATCTG-TTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCG
7187843 GTCTGCTCCT
Statistics
Matches: 369, Mismatches: 62, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
129 2 0.01
130 12 0.03
131 80 0.22
132 251 0.68
133 20 0.05
134 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (131 bp):
ATCTTCGATCTGTTCACTGTAAGCACAGGAATGTCAAATCTGATATCTTCGATCCGTTCCCTATA
AGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCAATCTGA
A
Found at i:7187591 original size:176 final size:176
Alignment explanation
Indices: 7187320--7187753 Score: 762
Period size: 176 Copynumber: 2.5 Consensus size: 176
7187310 TCTTCGATCC
* * *
7187320 GTTCCTTATAAGCACAGGGATCCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
* *
7187385 GTCATGCTGAAATCTTCGATCTAGTTCACTGTAAGCACAAGAATGTCAGATCTGTTATCTTCGAT
66 GCCATGCTGAAATCTTCGATCTAGTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGAT
*
7187450 CCGTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
131 CCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
7187496 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
* *
7187561 GCCATGCTGAAATCTTTGATCT-GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 GCCATGCTGAAATCTTCGATCTAG-TTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGA
7187625 TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
130 TCCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
*
7187672 GTTCCCTATAAGCACAGGAATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
*
7187737 GCCATGCTAAAATCTTC
66 GCCATGCTGAAATCTTC
7187754 AACTTGTTCC
Statistics
Matches: 246, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
175 1 0.00
176 245 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (176 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGAT
GCCATGCTGAAATCTTCGATCTAGTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGAT
CCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
Found at i:7187982 original size:68 final size:68
Alignment explanation
Indices: 7187898--7188085 Score: 297
Period size: 68 Copynumber: 2.8 Consensus size: 68
7187888 TCTTCCACTC
* * * * *
7187898 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT-TT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
7187962 GCTG
66 -CTG
* *
7187966 AAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGATCCT
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
7188031 CTG
66 CTG
7188034 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGG
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGG
7188086 GAAAAAAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
68 109 0.99
69 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (68 bp):
AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGATCCT
CTG
Found at i:7188220 original size:43 final size:43
Alignment explanation
Indices: 7188154--7188443 Score: 243
Period size: 43 Copynumber: 6.6 Consensus size: 43
7188144 CATCTTCGAT
* * * * *
7188154 CTATTTCCCAACTGCTTAAGGGGTTAAGATCTGTAAATTCAAC
1 CTATTACCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGC
7188197 CTATTACCCTACTGGC-TAGGGGGTTAAGATTTGTAAATTTTCAGC
1 CTATTACCCTACT-GCTTAGGGGGTTAAGATTTGTAAA--TTCAGC
* * *
7188242 CTATTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGC
1 CTATTACCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGC
* * * *
7188285 TTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATT-T---TTTA-T
1 CTATTACCCTACTGCTTAGGGGGTT-AAG---AT--TTGTAAATTCAGC
* *
7188329 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGC
1 CTATTACCCTACTGCTTAGGGGGTTAAGATTTGTAAA--TTCAGC
* ** *
7188374 C-AGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCGGC
1 CTA-TTACCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGC
* *
7188417 TTGTTACCCTACTGCTTAGGGGGTTAA
1 CTATTACCCTACTGCTTAGGGGGTTAA
7188444 AGCCCATCAT
Statistics
Matches: 198, Mismatches: 30, Indels: 38
0.74 0.11 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 2 0.01
43 88 0.44
44 33 0.17
45 69 0.35
47 1 0.01
48 1 0.01
49 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (43 bp):
CTATTACCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGC
Found at i:7188256 original size:88 final size:88
Alignment explanation
Indices: 7188154--7188443 Score: 261
Period size: 88 Copynumber: 3.3 Consensus size: 88
7188144 CATCTTCGAT
* * *
7188154 CTATTTCCCAACTGCTTAAGGGGTTAAGATCTGTAAATTCAACCTATTACCCTACTGGC-TAGGG
1 CTATTACCCTACTGCTTAAGGGGTTAAGATCTGTAAATTCAGCCTATTACCCTACT-GCTTAGGG
*
7188218 GGTTAAGATTTGTAAATTTTCAGC
65 GGTTAAGACTTGTAAATTTTCAGC
* * * * *
7188242 CTATTACCCTACTGCTT-AGGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGG
1 CTATTACCCTACTGCTTAAGGGG-TTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAGGG
*** * * * *
7188306 GGTTAA-AGCCCATCATTTTTTA-T
65 GGTTAAGA-CTTGTAAATTTTCAGC
* *
7188329 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCC-AGTTACCCTACTGCTTAG
1 CTATTACCCTACTGCTTAAGGGGTTAAGATCTGTAAA--TTCAGCCTA-TTACCCTACTGCTTAG
* * *
7188393 GGGTTTAAGGCTTGTAAA--TTCGGC
63 GGGGTTAAGACTTGTAAATTTTCAGC
* * *
7188417 TTGTTACCCTACTGCTTAGGGGGTTAA
1 CTATTACCCTACTGCTTAAGGGGTTAA
7188444 AGCCCATCAT
Statistics
Matches: 157, Mismatches: 36, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
87 38 0.24
88 88 0.56
89 31 0.20
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (88 bp):
CTATTACCCTACTGCTTAAGGGGTTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAGGGG
GTTAAGACTTGTAAATTTTCAGC
Found at i:7188333 original size:132 final size:132
Alignment explanation
Indices: 7188197--7188510 Score: 524
Period size: 132 Copynumber: 2.4 Consensus size: 132
7188187 TAAATTCAAC
* * *
7188197 CTATTACCCTACTGGC-TAGGGGGTTAAGATTTGTAAATTTTCAGCCTATTACCCTACTGCTTAG
1 CTATTTCCCTACT-GCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTATTACCCTACTGCTTAG
* *
7188261 GGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTT
65 GGGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTT
*
7188326 TAT
130 GAT
7188329 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCC-AGTTACCCTACTGCTTAG
1 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTA-TTACCCTACTGCTTAG
7188393 GGGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTT
65 GGGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTT
7188458 GAT
130 GAT
* *
7188461 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGTCTATT
1 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTATT
7188511 CCACTGCCAA
Statistics
Matches: 171, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
131 3 0.02
132 167 0.98
133 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.37
Consensus pattern (132 bp):
CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTATTACCCTACTGCTTAGG
GGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTG
AT
Found at i:7188426 original size:175 final size:174
Alignment explanation
Indices: 7188111--7188443 Score: 456
Period size: 175 Copynumber: 1.9 Consensus size: 174
7188101 ATTTCCAGCC
* *
7188111 TGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
1 TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
*
7188176 GTTAAGATCTGTAAATTCAACCTATTACCCTACTGGCTAGGGGGTTAAGATTTGTAAATTTTCAG
66 GTTAAGATCTGTAAATTCAACCTATTACCCTACTGGCTAGGGGGTTAAGACTTGTAAA-TTTCAG
*
7188241 CCTATTACCCTACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCT
130 CCTATTACCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTCGGCT
* * ** * *
7188286 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTTATCTATTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
* * *
7188351 GTTAAGATCTGTAAATCTTCAGCC-AGTTACCCTACT-GCTTAGGGGTTTAAGGCTTGTAAA-TT
66 GTTAAGATCTGTAAA--TTCAACCTA-TTACCCTACTGGC-TAGGGGGTTAAGACTTGTAAATTT
* * *
7188413 CGGCTTGTTACCCTACTGCTTAGGGGGTTAA
127 CAGCCTATTACCCTACTGCTTAGGGGGTTAA
7188444 AGCCCATCAT
Statistics
Matches: 138, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
175 101 0.73
176 3 0.02
177 34 0.25
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (174 bp):
TGTTACCCTACTACTTAGGGGGTTAAAGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
GTTAAGATCTGTAAATTCAACCTATTACCCTACTGGCTAGGGGGTTAAGACTTGTAAATTTCAGC
CTATTACCCTACTGCTTAGGGGGTTAAGGTTTGTAAATTCGGCT
Found at i:7188650 original size:134 final size:134
Alignment explanation
Indices: 7188486--7188865 Score: 679
Period size: 134 Copynumber: 2.8 Consensus size: 134
7188476 TTAGGGGGTT
* *
7188486 AAGATCTGTAAATCTTCAGTCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAAT
1 AAGATCTG-CAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAAT
7188551 GTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGG
65 GTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGG
7188616 AAGGC
130 AAGGC
7188621 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
* *
7188686 TACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCTTTGACCTGCTTCGCTGCCAAATACAGGA
66 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGA
7188751 AGGC
131 AGGC
7188755 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
* *
7188820 TACTCCACTATAGTCACATGGAGGTAAAATCTGCCATCTTTGATCT
66 TACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCT
7188866 TCAATCTATT
Statistics
Matches: 235, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
134 200 0.85
135 8 0.03
136 27 0.11
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (134 bp):
AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGA
AGGC
Found at i:7188652 original size:46 final size:46
Alignment explanation
Indices: 7188602--7188795 Score: 139
Period size: 46 Copynumber: 4.3 Consensus size: 46
7188592 ATCTGCTTCG
7188602 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
* ** * * ** * *
7188648 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * ** * * *
7188693 CTG--TAGT-CAGGGAGGTAAAATCCGCCATCTTTGACCTGCTT-CG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
7188736 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
7188782 CTGCCAAATACAGG
1 CTGCCAAATACAGG
7188796 GAGATAGAGT
Statistics
Matches: 103, Mismatches: 37, Indels: 16
0.66 0.24 0.10
Matches are distributed among these distances:
41 2 0.02
42 10 0.10
43 11 0.11
44 1 0.01
45 20 0.19
46 55 0.53
47 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:7188880 original size:97 final size:95
Alignment explanation
Indices: 7188765--7188960 Score: 356
Period size: 97 Copynumber: 2.0 Consensus size: 95
7188755 AAGATCTGCA
7188765 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
*
7188830 TAGTCACATGGAGGTAAAATCTGCCATCTTTG
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTTG
*
7188862 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
7188927 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
7188957 ATCT
1 ATCT
7188961 GCTTCGCTGT
Statistics
Matches: 97, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
95 29 0.30
97 68 0.70
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
TAGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:7189143 original size:85 final size:85
Alignment explanation
Indices: 7189036--7189293 Score: 421
Period size: 85 Copynumber: 3.0 Consensus size: 85
7189026 AAGATTTTTT
* **
7189036 TTTAATCC-GCTCCACTGCAACCAATGAAGGCAAGACTTGTTTTCGATCTACTTCGCTGTTAATT
1 TTTAA-CCAGCTCCACTGCAACCAATGAAGGCAAGACTTGTTTTCGATCTGCTTCGCTGTTAACG
7189100 CAGGAAGGCAAGATCTGCTTC
65 CAGGAAGGCAAGATCTGCTTC
*
7189121 TTTAACCAGCTCCACTGTAACCAATGAAGGCAA-AGCTTGTTTTCGATCTGCTTCGCTGTTAACG
1 TTTAACCAGCTCCACTGCAACCAATGAAGGCAAGA-CTTGTTTTCGATCTGCTTCGCTGTTAACG
*
7189185 CAGGAAGGCAAGATCTACTTC
65 CAGGAAGGCAAGATCTGCTTC
*
7189206 TTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTGTTTTCGATCTGCTTCGCTGTTAACGC
1 TTTAACCAGCTCCACTGCAACCAATGAAGGCAAGACTTGTTTTCGATCTGCTTCGCTGTTAACGC
7189271 AGGAAGGCAAGATCTGCTGTC
66 AGGAAGGCAAGATCTGCT-TC
7189292 TT
1 TT
7189294 CACTGATCTG
Statistics
Matches: 161, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
84 3 0.02
85 154 0.96
86 4 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29
Consensus pattern (85 bp):
TTTAACCAGCTCCACTGCAACCAATGAAGGCAAGACTTGTTTTCGATCTGCTTCGCTGTTAACGC
AGGAAGGCAAGATCTGCTTC
Found at i:7189281 original size:42 final size:41
Alignment explanation
Indices: 7189061--7189281 Score: 124
Period size: 42 Copynumber: 5.2 Consensus size: 41
7189051 TGCAACCAAT
* * *
7189061 GAAGGCAAGACTTGTTTTCGATCTACTTCGCTGTTAATTCAG
1 GAAGGCAAGGCTTGTTTTCGATCTGCTTCGCTGTTAA-CCAG
* ** * * * * *
7189103 GAAGGCAA-GATCTGCTTCTTTAACCAGCTCCACTG-TAACCAAT
1 GAAGGCAAGGCT-TG-TT-TTCGATCTGCTTCGCTGTTAACC-AG
*
7189146 GAAGGCAAAGCTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
1 GAAGGCAAGGCTTGTTTTCGATCTGCTTCGCTGTTAAC-CAG
* ** ** * * * * * *
7189188 GAAGGCAAGATCTACTTCTTTAACCAGCTCCACTG-CAACCAAT
1 GAAGGCAAG-GCTTGTT-TTCGATCTGCTTCGCTGTTAACC-AG
7189231 GAAGGCAAGGCTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
1 GAAGGCAAGGCTTGTTTTCGATCTGCTTCGCTGTTAAC-CAG
7189273 GAAGGCAAG
1 GAAGGCAAG
7189282 ATCTGCTGTC
Statistics
Matches: 125, Mismatches: 42, Indels: 24
0.65 0.22 0.13
Matches are distributed among these distances:
41 23 0.18
42 44 0.35
43 35 0.28
44 23 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (41 bp):
GAAGGCAAGGCTTGTTTTCGATCTGCTTCGCTGTTAACCAG
Found at i:7190370 original size:21 final size:21
Alignment explanation
Indices: 7190344--7190390 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7190334 GGTATAGCAG
*
7190344 GATCACCACATGCCCCAATCT
1 GATCACCACAAGCCCCAATCT
** *
7190365 GATCACTTCAAGCCCCATTCT
1 GATCACCACAAGCCCCAATCT
7190386 GATCA
1 GATCA
7190391 ATATTTGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.38, G:0.11, T:0.23
Consensus pattern (21 bp):
GATCACCACAAGCCCCAATCT
Found at i:7194019 original size:19 final size:20
Alignment explanation
Indices: 7193990--7194038 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
7193980 CACTTCGTGA
* *
7193990 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAGATGCATG
*
7194009 CAATGTAATGCAGATGCATG
1 AAATGTAATGCAGATGCATG
7194029 AAATG-AATGC
1 AAATGTAATGC
7194039 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAGATGCATG
Found at i:7196282 original size:3 final size:3
Alignment explanation
Indices: 7196269--7196354 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
7196259 GAGGGCATAT
7196269 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
7196313 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7196355 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7196293 original size:12 final size:12
Alignment explanation
Indices: 7196269--7196351 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
7196259 GAGGGCATAT
7196269 ATAATAT-AATA
1 ATAATATAAATA
7196280 ATAATATAAATA
1 ATAATATAAATA
7196292 ATAATATATACATGA
1 ATAATATA-A-AT-A
7196307 GA-AATA-ATAATA
1 -ATAATATA-AATA
7196319 ATAATATAAATA
1 ATAATATAAATA
* *
7196331 ATAGTAAAAATA
1 ATAATATAAATA
*
7196343 ATAAAATAA
1 ATAATATAA
7196352 TAAAACAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:7196313 original size:21 final size:18
Alignment explanation
Indices: 7196274--7196354 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
7196264 CATATATAAT
*
7196274 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
7196292 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
7196313 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
7196331 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
7196348 ATAATAA
1 ATAATAA
7196355 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:7196342 original size:27 final size:27
Alignment explanation
Indices: 7196269--7196355 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
7196259 GAGGGCATAT
* *
7196269 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
7196295 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
7196319 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
7196346 A-AATAATAAA
1 ATAAT-ATAAA
7196356 ACAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:7196708 original size:24 final size:24
Alignment explanation
Indices: 7196681--7196734 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 24
7196671 TAACCTTTTT
*
7196681 TCCAAAAAAATAAAAAAAAACACC
1 TCCAAAAAAACAAAAAAAAACACC
* *
7196705 TCC-AAAAAACAAAAAAAACCTCC
1 TCCAAAAAAACAAAAAAAAACACC
7196728 TCCAAAA
1 TCCAAAA
7196735 CAAAGAACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.65, C:0.26, G:0.00, T:0.09
Consensus pattern (24 bp):
TCCAAAAAAACAAAAAAAAACACC
Found at i:7196753 original size:23 final size:21
Alignment explanation
Indices: 7196687--7196757 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 21
7196677 TTTTTCCAAA
* * *
7196687 AAAATAAAAAAAAACACCTCC
1 AAAACAAAAAAAACCTCCTCC
7196708 AAAAAACAAAAAAAACCTCCTCC
1 --AAAACAAAAAAAACCTCCTCC
* *
7196731 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAA-AA-AAACCTCCTCC
7196754 AAAA
1 AAAA
7196758 AACCAAAAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 8 0.20
22 2 0.05
23 31 0.76
ACGTcount: A:0.61, C:0.27, G:0.01, T:0.11
Consensus pattern (21 bp):
AAAACAAAAAAAACCTCCTCC
Found at i:7196923 original size:4 final size:4
Alignment explanation
Indices: 7196914--7196940 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7196904 GGCCAAAGTT
7196914 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
7196941 TTTGTGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:7197801 original size:12 final size:12
Alignment explanation
Indices: 7197784--7197813 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
7197774 TTTATTTTTT
7197784 AAATTTGTAGCA
1 AAATTTGTAGCA
7197796 AAATTTGTAGCA
1 AAATTTGTAGCA
7197808 AAATTT
1 AAATTT
7197814 TTTTGAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (12 bp):
AAATTTGTAGCA
Found at i:7210139 original size:22 final size:22
Alignment explanation
Indices: 7210105--7210148 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7210095 TAGCGTACAT
*
7210105 ATAAAAACGTATACGTA-ATATA
1 ATAAAAACATATA-GTATATATA
*
7210127 ATAAAAATATATAGTATATATA
1 ATAAAAACATATAGTATATATA
7210149 TATACATGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (22 bp):
ATAAAAACATATAGTATATATA
Found at i:7210243 original size:17 final size:17
Alignment explanation
Indices: 7210221--7210254 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7210211 ATATAATAAC
7210221 GATAATAACAATACAAA
1 GATAATAACAATACAAA
7210238 GATAATAACAATACAAA
1 GATAATAACAATACAAA
7210255 AAACATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.18
Consensus pattern (17 bp):
GATAATAACAATACAAA
Found at i:7224910 original size:22 final size:22
Alignment explanation
Indices: 7224876--7224919 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7224866 TAGCGTACAT
*
7224876 ATAAAAACGTATATGTA-ATATA
1 ATAAAAACATATA-GTATATATA
*
7224898 ATAAAAATATATAGTATATATA
1 ATAAAAACATATAGTATATATA
7224920 TACATGTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (22 bp):
ATAAAAACATATAGTATATATA
Found at i:7226532 original size:38 final size:38
Alignment explanation
Indices: 7226490--7226564 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
7226480 GGTCTTTAGT
*
7226490 GGGTTTTGGGTCTGTTGGGTTTATGGGTAGTTATTTGG
1 GGGTTTGGGGTCTGTTGGGTTTATGGGTAGTTATTTGG
7226528 GGGTTTGGGGTCTGTTGGGTTTATGGGTAGTTATTTG
1 GGGTTTGGGGTCTGTTGGGTTTATGGGTAGTTATTTG
7226565 TTTAGTTTGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.08, C:0.03, G:0.43, T:0.47
Consensus pattern (38 bp):
GGGTTTGGGGTCTGTTGGGTTTATGGGTAGTTATTTGG
Found at i:7227555 original size:37 final size:37
Alignment explanation
Indices: 7227505--7227579 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
7227495 CAAAGTAAAT
* *
7227505 TTATAAATTATATTATGGAAATTGGTCACAATAACAA
1 TTATAAATTATATTATGGAAACTGGTCACAAAAACAA
*
7227542 TTATAAATTATATTATGGAAACTGGTCATAAAAACAA
1 TTATAAATTATATTATGGAAACTGGTCACAAAAACAA
7227579 T
1 T
7227580 GAATATGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.35
Consensus pattern (37 bp):
TTATAAATTATATTATGGAAACTGGTCACAAAAACAA
Found at i:7229392 original size:27 final size:27
Alignment explanation
Indices: 7229362--7229437 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 27
7229352 CTCAACGAGT
7229362 TCGGATGCCTAGTTACATCTCACGAAC
1 TCGGATGCCTAGTTACATCTCACGAAC
* *
7229389 TCGGA---CTCA---AC-TC-AACGAGC
1 TCGGATGCCT-AGTTACATCTCACGAAC
7229409 TCGGATGCCTAGTTACATCTCACGAAC
1 TCGGATGCCTAGTTACATCTCACGAAC
7229436 TC
1 TC
7229438 AGACTCAACT
Statistics
Matches: 36, Mismatches: 4, Indels: 18
0.62 0.07 0.31
Matches are distributed among these distances:
20 10 0.28
21 2 0.06
22 3 0.08
23 2 0.06
24 2 0.06
25 3 0.08
26 2 0.06
27 12 0.33
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (27 bp):
TCGGATGCCTAGTTACATCTCACGAAC
Found at i:7229407 original size:47 final size:47
Alignment explanation
Indices: 7229338--7229460 Score: 228
Period size: 47 Copynumber: 2.6 Consensus size: 47
7229328 GCCCATAAGT
*
7229338 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
7229385 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
*
7229432 GAACTCAGACTCAACTCAACGAGCTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
7229461 ACTCAAATAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:7235704 original size:23 final size:23
Alignment explanation
Indices: 7235684--7235728 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
7235674 TTAAATTTTG
7235684 AATTATTTAGTGATAATATTTAA
1 AATTATTTAGTGATAATATTTAA
7235707 AATTATTTAGTGATAATATTTA
1 AATTATTTAGTGATAATATTTA
7235729 GAAAAAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (23 bp):
AATTATTTAGTGATAATATTTAA
Found at i:7235911 original size:19 final size:19
Alignment explanation
Indices: 7235873--7235916 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7235863 TCATTATGAC
* *
7235873 AATTTCAATTTTTTTCTTT
1 AATTTCAATCTTTTGCTTT
* *
7235892 ACTTTCAATCTTTTGGTTT
1 AATTTCAATCTTTTGCTTT
7235911 AATTTC
1 AATTTC
7235917 CTTCCAAGGC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.20, C:0.14, G:0.05, T:0.61
Consensus pattern (19 bp):
AATTTCAATCTTTTGCTTT
Found at i:7240725 original size:51 final size:51
Alignment explanation
Indices: 7240649--7240768 Score: 188
Period size: 51 Copynumber: 2.4 Consensus size: 51
7240639 AACTAAGTTA
* *
7240649 TCCGGATAAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGG-AATTAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAAC-AAGGTAATAAT
*
7240700 TCCGGATGAAATATGAAGCTCTTGTTAAAGTTAGAGCAACAAGGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAGGTAATAAT
*
7240751 TCCGGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
7240769 TAAGTTTGAG
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 4 0.06
51 60 0.94
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAGGTAATAAT
Found at i:7247544 original size:127 final size:127
Alignment explanation
Indices: 7247243--7247544 Score: 383
Period size: 129 Copynumber: 2.4 Consensus size: 127
7247233 TGGTGTTTGA
* * * * *
7247243 AAATTTGAGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCCCGTTTGTTCAAAATAATCGAACC
1 AAATTTGAGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCTCGTTTATCCAAAATAATCAAACA
*
7247308 TTCCTTTAGAATTTCACTCGCTTTCTTTAAAAATTCTAAAACAAGGCAATGTTTAATGCTTGG
66 TTCCTTTAGAATTTCACTCGCTTTCTTT-AAAATTCTAAAACAAGGCAATGTTCAATGCTTGG
* * * * * *
7247371 AAATTTGGGGAACCGTGCCTTATCGTGCTGGGTTTCGATTTCTCGTTTATCCAAAATCATCAAAT
1 AAATTT-GAGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCTCGTTTATCCAAAATAATCAAAC
* * *
7247436 ATTCTTTTAGAATTTCATTCG-TATTCTTT-AAATTCTAAAACAAGGCAATGTTCAATGTTTGG
65 ATTCCTTTAGAATTTCACTCGCT-TTCTTTAAAATTCTAAAACAAGGCAATGTTCAATGCTTGG
* * * *
7247498 GAATTCGAGAAATCGTGCCCTACCGTGCTGGGTTTTGATTTTTCGTT
1 AAATTTGAG-AATCGTGCCCTACCGTGCTGGGTTTCGATTTCTCGTT
7247545 GGAATAAATG
Statistics
Matches: 148, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
126 2 0.01
127 67 0.45
128 7 0.05
129 72 0.49
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (127 bp):
AAATTTGAGAATCGTGCCCTACCGTGCTGGGTTTCGATTTCTCGTTTATCCAAAATAATCAAACA
TTCCTTTAGAATTTCACTCGCTTTCTTTAAAATTCTAAAACAAGGCAATGTTCAATGCTTGG
Found at i:7247967 original size:18 final size:19
Alignment explanation
Indices: 7247939--7247974 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7247929 CAACATTGTT
*
7247939 TCTCAAAAAGCGGTTTTAA
1 TCTCAAAAAGCGCTTTTAA
7247958 TCTC-AAAAGCGCTTTTA
1 TCTCAAAAAGCGCTTTTA
7247975 GACTAAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (19 bp):
TCTCAAAAAGCGCTTTTAA
Found at i:7250339 original size:21 final size:21
Alignment explanation
Indices: 7250315--7250358 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7250305 GTTCTGCTCT
*
7250315 GCCTCCCTCGCTGCTGCCTCC
1 GCCTCCCGCGCTGCTGCCTCC
7250336 GCCTCCCGCGCTGCTGCCTCC
1 GCCTCCCGCGCTGCTGCCTCC
7250357 GC
1 GC
7250359 TCTAAGTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.00, C:0.57, G:0.23, T:0.20
Consensus pattern (21 bp):
GCCTCCCGCGCTGCTGCCTCC
Found at i:7256023 original size:53 final size:49
Alignment explanation
Indices: 7255948--7256052 Score: 129
Period size: 53 Copynumber: 2.1 Consensus size: 49
7255938 GTGAGTTATG
* ** *
7255948 TAATTTATTTAAGTAATGATCAATATTAATACTATTTTGATAAAAATTAGTTA
1 TAATATATTTAAACAATGATCAATATT-AT--TATATTGAT-AAAATTAGTTA
*
7256001 TAATATATTTAAACAATGATCAATATTATTATATTGATAAAATTATTTA
1 TAATATATTTAAACAATGATCAATATTATTATATTGATAAAATTAGTTA
7256050 TAA
1 TAA
7256053 GTGGCCCTTC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 13 0.28
50 8 0.17
52 2 0.04
53 24 0.51
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.45
Consensus pattern (49 bp):
TAATATATTTAAACAATGATCAATATTATTATATTGATAAAATTAGTTA
Found at i:7256881 original size:421 final size:421
Alignment explanation
Indices: 7256097--7256947 Score: 1589
Period size: 421 Copynumber: 2.0 Consensus size: 421
7256087 TTTAAGGTCG
*
7256097 ATAAAATTATTTATAAGCTCTATAGAACTTTTTTTGAAATCTTTTTTTATACAAATACATTTAAA
1 ATAAAATTATTTATAAGCTCCATAGAACTTTTTTTGAAATCTTTTTTTATACAAATACATTTAAA
*
7256162 AATATTAAATATTAAAATCAAACATTATTAATATAAAAAAAATAGTAATCTGAATATAATAATAT
66 AATATTAAATATTAAAATAAAACATTATTAATATAAAAAAAATAGTAATCTGAATATAATAATAT
7256227 CAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATT
131 CAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATT
*
7256292 CAATAGCGATAGAACTTTTTTCAAGATTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGT
196 CAATAGCGATAGAACTTTTTTCAAGATATTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGT
* * *
7256357 TACACCTAGGGGGGATCCATTATATCTTGCAGCTCGATATAAGGGAACCCGTCAGGTTTCCAGCC
261 TACACCTAAGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCC
7256422 TATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAAT
326 TATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAAT
7256487 TATAATGGACAAGCAAGCTACATATATGGTA
391 TATAATGGACAAGCAAGCTACATATATGGTA
*
7256518 ATAAAATTGTTTATAAGCTCCATAGAACTTTTTTTTGAAATCTTTTTTTATACAAATACATTTAA
1 ATAAAATTATTTATAAGCTCCATAGAAC-TTTTTTTGAAATCTTTTTTTATACAAATACATTTAA
*
7256583 AAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAAATAGTAATTTGAATATAATAATA
65 AAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAAATAGTAATCTGAATATAATAATA
*
7256647 TCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATAT
130 TCAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATAT
7256712 TCAATAGCGATAGAACTTTTTTCAAG-TCATTTTGAATTTTTTAAGATTCATCATACGTGGCGTT
195 TCAATAGCGATAGAACTTTTTTCAAGAT-ATTTTGAATTTTTTAAGATTCATCATACGTGGCGTT
7256776 GTTACACCTAAGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAG
259 GTTACACCTAAGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAG
7256841 CCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTA
324 CCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTA
7256906 ATTATAATGGACAAGCAAGCTACATATATGGTA
389 ATTATAATGGACAAGCAAGCTACATATATGGTA
7256939 ATAAAATTA
1 ATAAAATTA
7256948 ATTCATACTT
Statistics
Matches: 418, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
420 1 0.00
421 347 0.83
422 70 0.17
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.36
Consensus pattern (421 bp):
ATAAAATTATTTATAAGCTCCATAGAACTTTTTTTGAAATCTTTTTTTATACAAATACATTTAAA
AATATTAAATATTAAAATAAAACATTATTAATATAAAAAAAATAGTAATCTGAATATAATAATAT
CAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATT
CAATAGCGATAGAACTTTTTTCAAGATATTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGT
TACACCTAAGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCC
TATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAAT
TATAATGGACAAGCAAGCTACATATATGGTA
Found at i:7257159 original size:15 final size:15
Alignment explanation
Indices: 7257139--7257167 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7257129 ACAATTTTGA
7257139 AATAAAACGTACCTT
1 AATAAAACGTACCTT
7257154 AATAAAACGTACCT
1 AATAAAACGTACCT
7257168 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:7261031 original size:24 final size:24
Alignment explanation
Indices: 7260998--7261043 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
7260988 TTGTATTTGT
7260998 AAACAAAGACTTAGAAATTAAAAG
1 AAACAAAGACTTAGAAATTAAAAG
*
7261022 AAACAGAGACTTAGAAATTAAA
1 AAACAAAGACTTAGAAATTAAA
7261044 GTTACCTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.61, C:0.09, G:0.13, T:0.17
Consensus pattern (24 bp):
AAACAAAGACTTAGAAATTAAAAG
Found at i:7262264 original size:14 final size:14
Alignment explanation
Indices: 7262245--7262303 Score: 64
Period size: 14 Copynumber: 4.2 Consensus size: 14
7262235 TAAGACCCTG
*
7262245 ACCCTATACCATAA
1 ACCCTAAACCATAA
*
7262259 ACCCTAAACTATAA
1 ACCCTAAACCATAA
* **
7262273 ACCTTAAACCCCAA
1 ACCCTAAACCATAA
*
7262287 ACCCTAGACCATAA
1 ACCCTAAACCATAA
7262301 ACC
1 ACC
7262304 TTAATTAACC
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.44, C:0.37, G:0.02, T:0.17
Consensus pattern (14 bp):
ACCCTAAACCATAA
Found at i:7262301 original size:21 final size:21
Alignment explanation
Indices: 7262245--7262303 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
7262235 TAAGACCCTG
* *
7262245 ACCCTATACCATAAACCCTAA
1 ACCCTAAACCATAAACCCCAA
** *
7262266 ACTATAAACCTTAAACCCCAA
1 ACCCTAAACCATAAACCCCAA
*
7262287 ACCCTAGACCATAAACC
1 ACCCTAAACCATAAACC
7262304 TTAATTAACC
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.44, C:0.37, G:0.02, T:0.17
Consensus pattern (21 bp):
ACCCTAAACCATAAACCCCAA
Found at i:7262434 original size:8 final size:8
Alignment explanation
Indices: 7262402--7262451 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
7262392 TAAACCATTG
7262402 ACCCTT-A
1 ACCCTTAA
*
7262409 ACCCCTAA
1 ACCCTTAA
7262417 ACTCC-T-A
1 AC-CCTTAA
7262424 ACCCTTAA
1 ACCCTTAA
7262432 A-CCTTAA
1 ACCCTTAA
7262439 ACCCTTAA
1 ACCCTTAA
7262447 ACCCT
1 ACCCT
7262452 AATATCACTA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
6 2 0.05
7 16 0.43
8 17 0.46
9 2 0.05
ACGTcount: A:0.34, C:0.42, G:0.00, T:0.24
Consensus pattern (8 bp):
ACCCTTAA
Found at i:7262513 original size:14 final size:14
Alignment explanation
Indices: 7262478--7262507 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7262468 AATATCTTAG
7262478 ACCCTAAATAATAA
1 ACCCTAAATAATAA
7262492 ACCCTAAATAATAA
1 ACCCTAAATAATAA
7262506 AC
1 AC
7262508 TTTAAAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (14 bp):
ACCCTAAATAATAA
Found at i:7262688 original size:14 final size:14
Alignment explanation
Indices: 7262671--7262708 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
7262661 CCTCAAACCC
7262671 TAAATCATAAAACA
1 TAAATCATAAAACA
* *
7262685 TAAATCATCAACCA
1 TAAATCATAAAACA
7262699 TAAATCATAA
1 TAAATCATAA
7262709 CCCTTAAACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAATCATAAAACA
Found at i:7262716 original size:14 final size:14
Alignment explanation
Indices: 7262666--7262716 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
7262656 ATAAACCTCA
7262666 AACCC-TAAATCAT
1 AACCCATAAATCAT
**
7262679 AAAACATAAATCAT
1 AACCCATAAATCAT
7262693 CAA-CCATAAATCAT
1 -AACCCATAAATCAT
*
7262707 AACCCTTAAA
1 AACCCATAAA
7262717 CCTATAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 5 0.16
14 24 0.77
15 2 0.06
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (14 bp):
AACCCATAAATCAT
Found at i:7263227 original size:156 final size:155
Alignment explanation
Indices: 7262942--7263316 Score: 355
Period size: 156 Copynumber: 2.4 Consensus size: 155
7262932 AAGATTGATA
* * * * * *
7262942 TATTGCGGCATTTTAAGTAAAGCGCCGCTAATGCCATTGAAGCTAATTTAAAACGACGTCG-TTT
1 TATTACGGCGTTTTTAGGAAAGCGCCGCTAATGCCATTGAAGCTCATATAAAACGACGTCGTTTT
* * * *
7263006 GCCTTAACCTATTAGCAGCGTTTACAAAAAAACGCAGCTAATTATGCGACCTATAGCGGCGTTTT
66 GCCTTAACATATTAGCAGCGTTTACAAAAAAACGCAGCTAATAAGGCGAACTATAGCGGCGTTTT
* *
7263071 TTACAAAAATGCCGCTAAAGTGCGAGC
131 TT--AAAAACGCCACTAAAGTGCGAGC
** * * *
7263098 TATTGTGGCGTTTTTAGGAAGGCGCCACTAATGTCATTGAAGCTCATATAAAACGACGTCGTTTT
1 TATTACGGCGTTTTTAGGAAAGCGCCGCTAATGCCATTGAAGCTCATATAAAACGACGTCGTTTT
* * * * * * *
7263163 G-TTTAACATTTTAGCGGCGTTTTTC-TAAAAACGCCGC-AA-AAGGCAGAACTCTAGCGGCGTT
66 GCCTTAACATATTAGCAGCG-TTTACAAAAAAACGCAGCTAATAAGGC-GAACTATAGCGGCG-T
* ** *
7263224 TTTTTTAAAACGCCACTAAAGTTTGATC
128 TTTTTAAAAACGCCACTAAAGTGCGAGC
* * * * * * *
7263252 TGTTACGGCGTTTTTGGGAAAACGTCGCTACTGCCAATGAAGCTCATGTAAAACGACGTCGTTTT
1 TATTACGGCGTTTTTAGGAAAGCGCCGCTAATGCCATTGAAGCTCATATAAAACGACGTCGTTTT
7263317 TGGGAAAACG
Statistics
Matches: 177, Mismatches: 38, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
154 73 0.41
155 14 0.08
156 82 0.46
157 8 0.05
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (155 bp):
TATTACGGCGTTTTTAGGAAAGCGCCGCTAATGCCATTGAAGCTCATATAAAACGACGTCGTTTT
GCCTTAACATATTAGCAGCGTTTACAAAAAAACGCAGCTAATAAGGCGAACTATAGCGGCGTTTT
TTAAAAACGCCACTAAAGTGCGAGC
Found at i:7268334 original size:6 final size:7
Alignment explanation
Indices: 7268309--7268333 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7268299 ATTATTTATC
7268309 TTTTTAA
1 TTTTTAA
7268316 TTTTTAA
1 TTTTTAA
7268323 TTTTTAA
1 TTTTTAA
7268330 TTTT
1 TTTT
7268334 ATTAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTAA
Found at i:7273196 original size:12 final size:12
Alignment explanation
Indices: 7273179--7273209 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
7273169 AATAACAATA
7273179 GGAAAACGGCCT
1 GGAAAACGGCCT
7273191 GGAAAACGGCCT
1 GGAAAACGGCCT
7273203 GGAAAAC
1 GGAAAAC
7273210 CCGATTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.23, G:0.32, T:0.06
Consensus pattern (12 bp):
GGAAAACGGCCT
Found at i:7281834 original size:43 final size:43
Alignment explanation
Indices: 7281711--7281835 Score: 198
Period size: 43 Copynumber: 2.9 Consensus size: 43
7281701 ACATATTATT
* * *
7281711 TCACCGGCA-TTACGCCTGCTAGGCACGAAGGCTCGAAGACACA
1 TCACCGGCACGTA-GCCTGCTAGGCACGAAGGCCCGAATACACA
*
7281754 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACGTAGCCTGCTAGGCACGAAGGCCCGAATACACA
7281797 TCACCGGCACGTAGCCTGCTAGGCACGAAGGCCCGAATA
1 TCACCGGCACGTAGCCTGCTAGGCACGAAGGCCCGAATA
7281836 TAATACCAGC
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
43 75 0.99
44 1 0.01
ACGTcount: A:0.28, C:0.34, G:0.26, T:0.12
Consensus pattern (43 bp):
TCACCGGCACGTAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:7281876 original size:38 final size:38
Alignment explanation
Indices: 7281828--7281911 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
7281818 GGCACGAAGG
* * * *
7281828 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
7281866 CCCGGATATAATACCAGCACGAAGCTTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
7281904 CCCGGATA
1 CCCGGATA
7281912 CACATCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:7288119 original size:19 final size:19
Alignment explanation
Indices: 7288083--7288120 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7288073 TTTGAATGTA
*
7288083 GCCTTTAGCTACCAATCTT
1 GCCTTTAGCTAACAATCTT
7288102 GCCTTGTAGCTAAC-ATCTT
1 GCCTT-TAGCTAACAATCTT
7288121 TCTTGCTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (19 bp):
GCCTTTAGCTAACAATCTT
Found at i:7288530 original size:21 final size:21
Alignment explanation
Indices: 7288504--7288544 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7288494 ACCTGCTCAA
* *
7288504 ACTCCACCTTTTTTGGAGTAC
1 ACTCCACCTATTGTGGAGTAC
7288525 ACTCCACCTATTGTGGAGTA
1 ACTCCACCTATTGTGGAGTA
7288545 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (21 bp):
ACTCCACCTATTGTGGAGTAC
Found at i:7290456 original size:12 final size:12
Alignment explanation
Indices: 7290441--7290465 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7290431 GATGAAAATG
7290441 TAAATAAAGAAA
1 TAAATAAAGAAA
7290453 TAAATAAAGAAA
1 TAAATAAAGAAA
7290465 T
1 T
7290466 GAACAAGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (12 bp):
TAAATAAAGAAA
Found at i:7290770 original size:20 final size:22
Alignment explanation
Indices: 7290719--7290770 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
7290709 TTTGAATAAT
*
7290719 AATAATACATGGTAAATTTATAC
1 AATAATA-ATGATAAATTTATAC
* *
7290742 AATATTAATGATAGATTTA-A-
1 AATAATAATGATAAATTTATAC
7290762 AATAATAAT
1 AATAATAAT
7290771 ATATTATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 8 0.32
21 1 0.04
22 10 0.40
23 6 0.24
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (22 bp):
AATAATAATGATAAATTTATAC
Found at i:7292362 original size:54 final size:54
Alignment explanation
Indices: 7292278--7292381 Score: 172
Period size: 54 Copynumber: 1.9 Consensus size: 54
7292268 GAAATAAGAC
*
7292278 TTGATGCGACCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAAT
1 TTGATGCGACCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTTATTTTAAT
* * *
7292332 TTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTT
1 TTGATGCGACCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTTATTT
7292382 CAATCCGCTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (54 bp):
TTGATGCGACCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTTATTTTAAT
Found at i:7292412 original size:44 final size:44
Alignment explanation
Indices: 7292340--7292630 Score: 189
Period size: 44 Copynumber: 6.7 Consensus size: 44
7292330 ATTTGATGCG
* * *
7292340 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTCA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTTTTATTTCA
* * ** * * *
7292384 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTT-G
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTTTTATTTCA
* * * ***
7292427 ATCTGCTCCGCTGCAA-TCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCTTTTATTTCA
* *** *
7292471 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTTTTA-T-TTCA
* * * * * * * *
7292517 GTCTACTCCACTGTAACCTCAAGGAGATAAGA-C-CTGA-TGCG
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTTTTATTTCA
* * *
7292558 ATCTGCTCTC-CTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTC-CACTGTAACTTCAGGGAGATAAGATCTTTTATTTCA
** *
7292602 ATCCACTCCACTGTAACTTTAGGGAGATA
1 ATCTGCTCCACTGTAACTTCAGGGAGATA
7292631 GGATAGTGTC
Statistics
Matches: 185, Mismatches: 52, Indels: 20
0.72 0.20 0.08
Matches are distributed among these distances:
41 28 0.15
42 3 0.02
43 32 0.17
44 89 0.48
45 1 0.01
46 32 0.17
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTTTTATTTCA
Found at i:7292889 original size:44 final size:44
Alignment explanation
Indices: 7292841--7292979 Score: 138
Period size: 44 Copynumber: 3.2 Consensus size: 44
7292831 TAATGTAGGA
7292841 AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
1 AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
* * * * * ** ** * * *
7292885 AGGCAAGGT-TTGTGTCTTCGATCTGCTTCGCTGTCAA-TGTAGG
1 AGGCAAGATCTTTTGTCTTCAACCAGC-TCTATCACAACCGAAAG
7292928 AAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
1 -AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
7292973 AGGCAAG
1 AGGCAAG
7292980 GTTTGTGTCT
Statistics
Matches: 67, Mismatches: 24, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
43 16 0.24
44 35 0.52
45 16 0.24
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (44 bp):
AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
Found at i:7292924 original size:88 final size:88
Alignment explanation
Indices: 7292702--7293037 Score: 466
Period size: 88 Copynumber: 3.9 Consensus size: 88
7292692 AGCTCCAATG
** * * * *
7292702 CAACCGATGGAGGCAAGGCTT-TGTCTTTGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
** * * * *
7292766 GCT-TCTTTAACTAGCTCCA-CTG
66 TTTGTCTTCAACCAGCTCTATC-A
* ** * *
7292788 CAATCGATGGATGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATC
1 CAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATC
7292851 TTTTGTCTTCAACCAGCTCTATCA
65 TTTTGTCTTCAACCAGCTCTATCA
7292875 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
7292940 TTTGTCTTCAACCAGCTCTATCA
66 TTTGTCTTCAACCAGCTCTATCA
7292963 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
1 CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
7293028 TTTGTCTTCA
66 TTTGTCTTCA
7293038 TTGATCTGTC
Statistics
Matches: 228, Mismatches: 16, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
86 59 0.26
87 31 0.14
88 138 0.61
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (88 bp):
CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
TTTGTCTTCAACCAGCTCTATCA
Found at i:7293021 original size:44 final size:44
Alignment explanation
Indices: 7292885--7293023 Score: 138
Period size: 44 Copynumber: 3.2 Consensus size: 44
7292875 CAACCGAAAG
7292885 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
1 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
* * * * * ** ** * * *
7292929 AGGCAAGATCTTTTGTCTTCAACCAGC-TCTATCACAACCGAAAG-
1 AGGCAAGGT-TTGTGTCTTCGATCTGCTTCGCTGTCAA-TGTAGGA
7292973 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
1 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
7293017 AGGCAAG
1 AGGCAAG
7293024 ATCTTTTGTC
Statistics
Matches: 67, Mismatches: 24, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
43 16 0.24
44 35 0.52
45 16 0.24
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
Found at i:7294130 original size:21 final size:21
Alignment explanation
Indices: 7294104--7294150 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7294094 GGTATAGCAG
*
7294104 GATCACCACATGCCCCAATCT
1 GATCACCACATACCCCAATCT
** *
7294125 GATCACTTCATACCCCATTCT
1 GATCACCACATACCCCAATCT
7294146 GATCA
1 GATCA
7294151 ATATTTGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.38, G:0.09, T:0.26
Consensus pattern (21 bp):
GATCACCACATACCCCAATCT
Found at i:7295155 original size:15 final size:16
Alignment explanation
Indices: 7295137--7295170 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7295127 CTTTTTTCTA
7295137 TTTTGA-CTTTGATTT
1 TTTTGATCTTTGATTT
*
7295152 TTTTGATTTTTGATTT
1 TTTTGATCTTTGATTT
7295168 TTT
1 TTT
7295171 GAATTCATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.12, C:0.03, G:0.12, T:0.74
Consensus pattern (16 bp):
TTTTGATCTTTGATTT
Found at i:7297780 original size:19 final size:20
Alignment explanation
Indices: 7297751--7297799 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
7297741 CACTTCGTGA
* *
7297751 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
7297770 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
7297790 AAATG-AATGC
1 AAATGTAATGC
7297800 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:7299701 original size:12 final size:12
Alignment explanation
Indices: 7299686--7299710 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7299676 GATGAAAATG
7299686 TAAATAAAGAAA
1 TAAATAAAGAAA
7299698 TAAATAAAGAAA
1 TAAATAAAGAAA
7299710 T
1 T
7299711 GAACAAGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (12 bp):
TAAATAAAGAAA
Found at i:7300016 original size:20 final size:22
Alignment explanation
Indices: 7299965--7300016 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
7299955 TTTGAATAAT
*
7299965 AATAATACATGGTAAATTTATAC
1 AATAATA-ATGATAAATTTATAC
* *
7299988 AATATTAATGATAGATTTA-A-
1 AATAATAATGATAAATTTATAC
7300008 AATAATAAT
1 AATAATAAT
7300017 ATATTATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 8 0.32
21 1 0.04
22 10 0.40
23 6 0.24
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (22 bp):
AATAATAATGATAAATTTATAC
Found at i:7302038 original size:3 final size:3
Alignment explanation
Indices: 7302024--7302081 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
7302014 TGGGTTGGAT
* * *
7302024 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA A-A GTA A-A GTAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
7302068 ATA ATA ATA TATA A
1 ATA ATA ATA -ATA A
7302082 ATATATATAC
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 2 0.04
3 38 0.84
4 5 0.11
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7302472 original size:3 final size:3
Alignment explanation
Indices: 7302459--7302536 Score: 56
Period size: 3 Copynumber: 25.3 Consensus size: 3
7302449 GAGAGTATAT
7302459 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
7302503 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A
7302537 AATGGCTTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
2 7 0.11
3 43 0.70
4 9 0.15
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7302483 original size:12 final size:12
Alignment explanation
Indices: 7302459--7302536 Score: 72
Period size: 12 Copynumber: 6.3 Consensus size: 12
7302449 GAGAGTATAT
7302459 ATAATAT-AATA
1 ATAATATAAATA
7302470 ATAATATAAATA
1 ATAATATAAATA
7302482 ATAATATATACATGA
1 ATAATATA-A-AT-A
7302497 GA-AATA-ATAATA
1 -ATAATATA-AATA
7302509 ATAATATAAATA
1 ATAATATAAATA
* *
7302521 ATAGTAAAAATA
1 ATAATATAAATA
7302533 ATAA
1 ATAA
7302537 AATGGCTTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
11 8 0.14
12 34 0.60
13 4 0.07
14 5 0.09
15 5 0.09
16 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:7302523 original size:21 final size:21
Alignment explanation
Indices: 7302416--7302539 Score: 77
Period size: 21 Copynumber: 6.1 Consensus size: 21
7302406 TAGAAGTAAC
* *
7302416 AATAATGATAGTAATAATATA
1 AATAATAATAATAATAATATA
*
7302437 AAT-A-AAT-ATAGAGAGAGTATA
1 AATAATAATAATA-ATA-A-TATA
*
7302458 TATAAT-ATAATAATAATATA
1 AATAATAATAATAATAATATA
*
7302478 AATAATAAT-AT-ATACAT-GA
1 AATAATAATAATAATA-ATATA
*
7302497 GA-AATAATAATAATAATATA
1 AATAATAATAATAATAATATA
* *
7302517 AATAATAGTAAAAATAATA-A
1 AATAATAATAATAATAATATA
7302537 AAT
1 AAT
7302540 GGCTTAAAAT
Statistics
Matches: 79, Mismatches: 12, Indels: 25
0.68 0.10 0.22
Matches are distributed among these distances:
18 8 0.10
19 13 0.16
20 24 0.30
21 26 0.33
22 5 0.06
23 3 0.04
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (21 bp):
AATAATAATAATAATAATATA
Found at i:7302532 original size:27 final size:27
Alignment explanation
Indices: 7302459--7302536 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 27
7302449 GAGAGTATAT
* *
7302459 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
7302485 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
7302509 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
7302536 A
1 A
7302537 AATGGCTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
23 2 0.05
24 10 0.25
25 11 0.28
26 4 0.10
27 10 0.25
28 3 0.08
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:7303124 original size:30 final size:30
Alignment explanation
Indices: 7303051--7303132 Score: 128
Period size: 30 Copynumber: 2.7 Consensus size: 30
7303041 ATTTGATGGT
** * *
7303051 GTAGGTGCAAGTGAAAGACAATGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
7303081 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
7303111 GTAGGTGCAAGTGGGAGGCAAG
1 GTAGGTGCAAGTGGGAGGCAAG
7303133 ATGGCTAGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.28, C:0.07, G:0.48, T:0.17
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
Done.