Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 251 of 316
Found at i:82824056 original size:132 final size:132
Alignment explanation
Indices: 82823868--82824114 Score: 325
Period size: 132 Copynumber: 1.9 Consensus size: 132
82823858 TGTGTGCTAG
* * * * ** * * *
82823868 TGTAAGACTATATCTGGGATATGGCATCGGCATCGGTATGTGATTTCATGTAAGACCATATCTGG
1 TGTAAGACCATATCTGGGACATGGAATCGGCACCGACATGAGATTTCATATAAGACCATATCTAG
* * ** *
82823933 GATATGGCGTTGATATG-AGATTTCGTGTAAGACCATGTCTGGGACATGGCATCGATGTGAGGTC
66 GATATGGCATCGATATGTAGA-CCCATGTAAGACCATGTCTGGGACATGGCATCGATGTGAGGTC
82823997 TCA
130 TCA
* **
82824000 TGTAAGACCATGTCTGGGACATGGAATCGGCACCGACATGAGATTTTGTATAAGACCATATCTAG
1 TGTAAGACCATATCTGGGACATGGAATCGGCACCGACATGAGATTTCATATAAGACCATATCTAG
82824065 GATATGGCATCGATATGTAGACCCATGTAAGACCATGTCTGGGACATGGC
66 GATATGGCATCGATATGTAGACCCATGTAAGACCATGTCTGGGACATGGC
82824115 TTTGGCATCC
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
132 94 0.97
133 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (132 bp):
TGTAAGACCATATCTGGGACATGGAATCGGCACCGACATGAGATTTCATATAAGACCATATCTAG
GATATGGCATCGATATGTAGACCCATGTAAGACCATGTCTGGGACATGGCATCGATGTGAGGTCT
CA
Found at i:82831674 original size:48 final size:48
Alignment explanation
Indices: 82831607--82831742 Score: 166
Period size: 48 Copynumber: 2.8 Consensus size: 48
82831597 ACCACAACTA
* *
82831607 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACGTTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATCGAT
* * **
82831655 ATGATAGCCAGTGTAAGACCATGTTTGGGACATGGCACCGGCATCGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATCGAT
* * * *
82831703 ATG-TGTGCCAATGTAAGACCATATCTGGGATATGGCATCA
1 ATGAT-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
82831743 GCCTCGGTAG
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 1 0.01
48 73 0.99
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATCGAT
Found at i:82831849 original size:90 final size:90
Alignment explanation
Indices: 82831694--82831918 Score: 217
Period size: 90 Copynumber: 2.5 Consensus size: 90
82831684 ACATGGCACC
* * * * * *
82831694 GGCATCGATATGT-GTGCCAATGTAAGACCATATCTGGGATATGGCATCAGC-CTCG--GTAGGT
1 GGCATCGATATGTAG-ACCCATGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGACGT--GA
* * *
82831755 GATTTCATGTAAGACCATATCTGGGATAT
62 GATTTCATATAAGACCATATCTAGGACAT
* * ** * *
82831784 GGCGTTGATATG-AGATTTCGTGTAATACCATGTCTGGGACATGGCATCGGCACCGACGTGAGAT
1 GGCATCGATATGTAGA-CCCATGTAAGACCATGTCTGGGACATGGCATCGGCACCGACGTGAGAT
**
82831848 TTTGTATAAGACCATATCTAGGACAT
65 TTCATATAAGACCATATCTAGGACAT
82831874 GGCATCGATATGTAGACCCATGTAAGACCATGTCTGGGACATGGC
1 GGCATCGATATGTAGACCCATGTAAGACCATGTCTGGGACATGGC
82831919 TTTGGCATCC
Statistics
Matches: 106, Mismatches: 23, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
90 100 0.94
91 4 0.04
92 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (90 bp):
GGCATCGATATGTAGACCCATGTAAGACCATGTCTGGGACATGGCATCGGCACCGACGTGAGATT
TCATATAAGACCATATCTAGGACAT
Found at i:82834101 original size:47 final size:47
Alignment explanation
Indices: 82834025--82834238 Score: 304
Period size: 47 Copynumber: 4.5 Consensus size: 47
82834015 CTTCGGGACT
* * * * * *
82834025 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
82834072 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
82834118 TCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
82834166 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
82834213 TATCACATATATATACACTTTCACAT
1 TATCAC--ATATATACACTTTCACAT
82834239 CACAATTATC
Statistics
Matches: 152, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
46 3 0.02
47 129 0.85
48 2 0.01
49 18 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:82837108 original size:29 final size:31
Alignment explanation
Indices: 82837072--82837147 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 31
82837062 GTTGAAGAAC
**
82837072 TCGCACACACAGTGCCTCAATT-ACCG-ATT
1 TCGCACACACAGTGCCTCAATTAAAAGAATT
* *
82837101 TCGCACACATAGTG-CTCGATTAAAAGAATT
1 TCGCACACACAGTGCCTCAATTAAAAGAATT
82837131 T-GCACACACAGTGCCTC
1 TCGCACACACAGTGCCTC
82837148 TAATCATTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.15
29 26 0.67
30 7 0.18
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (31 bp):
TCGCACACACAGTGCCTCAATTAAAAGAATT
Found at i:82837111 original size:57 final size:58
Alignment explanation
Indices: 82837039--82837147 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
82837029 GCCCACTGAT
* * *
82837039 CGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGATTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * *
82837096 CGATTTCGCACACATAGTGCTCGATTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGATTAAAAGAACTCGCACACACAGTGCCTC
82837148 TAATCATTCG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGATTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:82837391 original size:40 final size:40
Alignment explanation
Indices: 82837359--82837706 Score: 511
Period size: 40 Copynumber: 8.7 Consensus size: 40
82837349 CCAGCATGAT
* * * *
82837359 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
82837399 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
*
82837439 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
82837479 TACTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
82837519 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82837559 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
82837599 TGCTCTTCAGGACTTAGCCCGGGTACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82837639 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGGA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82837679 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
82837707 GTCGAGACCT
Statistics
Matches: 279, Mismatches: 27, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
39 5 0.02
40 272 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:82837701 original size:23 final size:23
Alignment explanation
Indices: 82837638--82837702 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 23
82837628 ACTAGCATGA
82837638 ATGCTCTTCGGGACTTAGCCCGG
1 ATGCTCTTCGGGACTTAGCCCGG
* * *
82837661 AT--ACATC---AC-TAGCACGG
1 ATGCTCTTCGGGACTTAGCCCGG
82837678 ATGCTCTTCGGGACTTAGCCCGG
1 ATGCTCTTCGGGACTTAGCCCGG
82837701 AT
1 AT
82837703 CATCGTCGAG
Statistics
Matches: 30, Mismatches: 6, Indels: 12
0.62 0.12 0.25
Matches are distributed among these distances:
17 9 0.30
18 2 0.07
19 3 0.10
21 3 0.10
22 2 0.07
23 11 0.37
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.25
Consensus pattern (23 bp):
ATGCTCTTCGGGACTTAGCCCGG
Found at i:82840009 original size:47 final size:47
Alignment explanation
Indices: 82839933--82840146 Score: 304
Period size: 47 Copynumber: 4.5 Consensus size: 47
82839923 CTTCGGGACT
* * * * * *
82839933 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
82839980 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
82840026 TCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
82840074 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
82840121 TATCACATATATATACACTTTCACAT
1 TATCAC--ATATATACACTTTCACAT
82840147 CACAATTATC
Statistics
Matches: 152, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
46 3 0.02
47 129 0.85
48 2 0.01
49 18 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:82843892 original size:50 final size:50
Alignment explanation
Indices: 82843775--82844208 Score: 404
Period size: 50 Copynumber: 8.6 Consensus size: 50
82843765 ATTGTGAGAA
* * * ** * *
82843775 CACATGTGTAGTACCATGTGCAGGCTACTATGTGTTTAAGACATTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--TACCAGATTGTTAGGT
*
82843827 CACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
82843877 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTC-GATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGT
** ** * * * *
82843928 CATGTGTGTAGTACTAAGCACAGGCTACTCCGTGTATCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
82843978 CACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * * * *
82844028 CGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCG-TTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGT
* ** * * *
82844079 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
82844129 CACATGTGTTGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
*
82844179 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
82844209 TTCATACCAG
Statistics
Matches: 303, Mismatches: 73, Indels: 14
0.78 0.19 0.04
Matches are distributed among these distances:
49 2 0.01
50 199 0.66
51 71 0.23
52 31 0.10
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:82844051 original size:151 final size:151
Alignment explanation
Indices: 82843821--82844209 Score: 580
Period size: 151 Copynumber: 2.6 Consensus size: 151
82843811 TAAGACATTT
* *
82843821 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* * ** *
82843886 AGTACTAAGTGCAGGCTACTATGTGTACTCGATAGTTTCGATCATGTGTGTAGTACTAAGCACAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGCACAG
*
82843951 GCTACTCCGTGTATCAAATGG
131 GCTACTACGTGTATCAAATGG
* * * *
82843972 TTAGGTCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGCCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* * **
82844037 AGTACTAAGTGCAGGCTATTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGCACAG
* *
82844102 GCTACTACGTGTATTAGATGG
131 GCTACTACGTGTATCAAATGG
* * * *
82844123 ATAAGTCACATGTGTTGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
82844188 AGTACTAAGTGCAGGCTACTAT
66 AGTACTAAGTGCAGGCTACTAT
82844210 TCATACCAGA
Statistics
Matches: 211, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
151 211 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGCACAG
GCTACTACGTGTATCAAATGG
Found at i:82844166 original size:101 final size:100
Alignment explanation
Indices: 82843827--82844208 Score: 318
Period size: 101 Copynumber: 3.8 Consensus size: 100
82843817 ATTTTTAGGT
** ** * * *
82843827 CACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAATAGATCACGTGTGTAGTACT
* * * ** *
82843892 AAGTGCAGGCTACTATGTGTACTC-GATAGTTTCGAT
66 AAGTGCAGGCTACTACGTGTAC-CAGATGGATAAG-C
** ** * * * * *** * *
82843928 CATGTGTGTAGTACTAAGCACAGGCTACTCCGTGTATCAAATGGTTAGGTCACGTGTGTAGCACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAATAGATCACGTGTGTAGTACT
* * *
82843993 AAGTGCAGGCTACTACGTGTACCGGATTGATAGGC
66 AAGTGCAGGCTACTACGTGTACCAGATGGATAAGC
* * * * *
82844028 CGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCG-TTAACTTCGATCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAA--TAGATCACGTGTGTAGTA
** *
82844092 CTAAGTGCAGGCTACTACGTGTATTAGATGGATAAGT
64 CTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGC
* * * * * * *
82844129 CACATGTGTTGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAATAGATCACGTGTGTAGTACT
82844194 AAGTGCAGGCTACTA
66 AAGTGCAGGCTACTA
82844209 TTCATACCAG
Statistics
Matches: 223, Mismatches: 54, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
99 1 0.00
100 60 0.27
101 159 0.71
102 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (100 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTAATAGATCACGTGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATGGATAAGC
Found at i:82845037 original size:180 final size:179
Alignment explanation
Indices: 82844777--82845142 Score: 497
Period size: 180 Copynumber: 2.0 Consensus size: 179
82844767 AGCATCCGAG
* * *
82844777 GTCT-GTACCATGACATAAATAATTTTTAGTGAAGAAAGATCGGAACTATCGGACAGTGAAATAG
1 GTCTCGTACCATGACATAAATAATTTTAAGTGAAGAAAGATCAGAACTATCAGACAGTGAAATAG
* * * *
82844841 TGGTATCTTTAATGAATAAACTATACTAATTGGCTGAACC-AAAAATTCTAAATATTTTATGATA
66 GGGTATCTTTAATGAATAAAATATACAAATTGGCTAAACCAAAAAATTCTAAAT-TTTTATG-TA
** *
82844905 AGAATATATGTGAGTCTAGTTTCTGGAAAAATTAGTGGTTCTTAATTTGGA
129 AGAATATATGTGAGTCTAGTTTCTGGAAAAATTAACGGATCTTAATTTGGA
* * * * *
82844956 GTCTCGTACCATGAGATAAATAATTTTAAGTGAAGAGATG-TCAGAACTGTTAGATAGTGAAATA
1 GTCTCGTACCATGACATAAATAATTTTAAGTGAAGA-AAGATCAGAACTATCAGACAGTGAAATA
* *
82845020 GGGGTAAT-TTTAATGAATAAAATGTACAAATTGGCTAAACCAAAAAATTCTAAATTTTTTTGTA
65 GGGGT-ATCTTTAATGAATAAAATATACAAATTGGCTAAACCAAAAAATTCTAAATTTTTATGTA
*
82845084 AGAATATATGTGAGTCTAGTTTTTGGAAAAATTAACGGATCTTAATTTGGA
129 AGAATATATGTGAGTCTAGTTTCTGGAAAAATTAACGGATCTTAATTTGGA
*
82845135 GTTTCGTA
1 GTCTCGTA
82845143 GCTCCAGCTA
Statistics
Matches: 164, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
179 60 0.37
180 87 0.53
181 17 0.10
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (179 bp):
GTCTCGTACCATGACATAAATAATTTTAAGTGAAGAAAGATCAGAACTATCAGACAGTGAAATAG
GGGTATCTTTAATGAATAAAATATACAAATTGGCTAAACCAAAAAATTCTAAATTTTTATGTAAG
AATATATGTGAGTCTAGTTTCTGGAAAAATTAACGGATCTTAATTTGGA
Found at i:82846103 original size:42 final size:42
Alignment explanation
Indices: 82846040--82846139 Score: 193
Period size: 42 Copynumber: 2.4 Consensus size: 42
82846030 AACACGGCCA
82846040 TGTG-GTCAAGCCGTGTGCCTCACACGGTTGAGAGCCACACT
1 TGTGTGTCAAGCCGTGTGCCTCACACGGTTGAGAGCCACACT
82846081 TGTGTGTCAAGCCGTGTGCCTCACACGGTTGAGAGCCACACT
1 TGTGTGTCAAGCCGTGTGCCTCACACGGTTGAGAGCCACACT
82846123 TGTGTGTCAAGCCGTGT
1 TGTGTGTCAAGCCGTGT
82846140 AACCTTCGAA
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 4 0.07
42 54 0.93
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (42 bp):
TGTGTGTCAAGCCGTGTGCCTCACACGGTTGAGAGCCACACT
Found at i:82847645 original size:28 final size:28
Alignment explanation
Indices: 82847611--82847706 Score: 183
Period size: 28 Copynumber: 3.4 Consensus size: 28
82847601 CAGCCTAGTT
82847611 CACGCCCGTGTCCTTCACACGGCCATGA
1 CACGCCCGTGTCCTTCACACGGCCATGA
*
82847639 CACGCCCGTCTCCTTCACACGGCCATGA
1 CACGCCCGTGTCCTTCACACGGCCATGA
82847667 CACGCCCGTGTCCTTCACACGGCCATGA
1 CACGCCCGTGTCCTTCACACGGCCATGA
82847695 CACGCCCGTGTC
1 CACGCCCGTGTC
82847707 TCAACCTGTG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.17, C:0.45, G:0.21, T:0.18
Consensus pattern (28 bp):
CACGCCCGTGTCCTTCACACGGCCATGA
Found at i:82848799 original size:48 final size:48
Alignment explanation
Indices: 82848728--82849105 Score: 361
Period size: 48 Copynumber: 7.9 Consensus size: 48
82848718 GTGTATTGTC
** * * *
82848728 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCT
* * * * *
82848776 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTC-ATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA-GGCT
* * * *
82848824 GATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCATGAT-GTGGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCGAGGCT
* * * *
82848872 GATGCCATGTCCCAGACATGGTCTTACACTA-ATGCACATATCAAAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATATCGAGGCT
* * * *
82848920 GATGACATGTCCTAGACATGGTCTTACACTGGCTCTCATGAT--ATGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCGA-GGCT
* * * * *
82848968 GATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCT
* * * *
82849016 GATGCCATGTCCCAGACATGTTCTTACACTAGATCTCATATCGTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCT
* * * *
82849064 GATGTCATGTCCTAGACATGGTCTTACACTGGCACACATATC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
82849106 ACCCAAATGT
Statistics
Matches: 267, Mismatches: 53, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
47 7 0.03
48 255 0.96
49 5 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGCT
Found at i:82848891 original size:96 final size:97
Alignment explanation
Indices: 82848727--82849106 Score: 482
Period size: 96 Copynumber: 4.0 Consensus size: 97
82848717 GGTGTATTGT
** * * * *
82848727 CGATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATG-TCGAGGCTGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGATCGTGGCTGATGCCATGTCCCAG
* * * *
82848791 ACATGGTCTTACACTAGCTCTCGTCTCATTGC
66 ACATGGTCTTACACTAGCTCACATATCAATGC
* *
82848823 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCATGAT-GTGGTTGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGATCGTGGCTGATGCCATGTCCCAG
* *
82848887 ACATGGTCTTACACTA-ATGCACATATCAAAGC
66 ACATGGTCTTACACTAGCT-CACATATCAATGC
* * * * *
82848919 CGATGACATGTCCTAGACATGGTCTTACACTGGCTCTCATGAT-ATGGCTGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGATCGTGGCTGATGCCATGTCCCAG
*
82848983 ACATGGTCTTACACTAGCACACATATCAATGC
66 ACATGGTCTTACACTAGCTCACATATCAATGC
* * * *
82849015 CGATGCCATGTCCCAGACATGTTCTTACACTAGATCTCAT-ATCGTGGCTGATGTCATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGATCGTGGCTGATGCCATGTCCCAG
* *
82849079 ACATGGTCTTACACTGGCACACATATCA
66 ACATGGTCTTACACTAGCTCACATATCA
82849107 CCCAAATGTC
Statistics
Matches: 248, Mismatches: 32, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
95 3 0.01
96 244 0.98
97 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (97 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGATCGTGGCTGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCACATATCAATGC
Found at i:82848991 original size:144 final size:143
Alignment explanation
Indices: 82848727--82849106 Score: 406
Period size: 144 Copynumber: 2.6 Consensus size: 143
82848717 GGTGTATTGT
** * * * * * * * * *
82848727 CGATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCACATATCAAAGCCGATGACATGTCCTAGA
* * * *
82848792 CATGGTCTTACACTAGCTCTCGTCTCATTGCCGATGCCATGTCCCAGACACGGTCTTACACTAGC
66 CATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACACGGTCTTACACTAGC
* * * *
82848857 TCTCATGAT-GTGGT
131 ACACAT-ATAAT-GC
*
82848871 TGATGCCATGTCCCAGACATGGTCTTACACTA-ATGCACATATCAAAGCCGATGACATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGAT-CACATATCAAAGCCGATGACATGTCCTAG
* * *
82848935 ACATGGTCTTACACTGGCTCTCATGAT-ATGGCTGATGCCATGTCCTAGACATGGTCTTACACTA
65 ACATGGTCTTACACTGGCTCTCAT-ATCATGGCCGATGCCATGTCCCAGACACGGTCTTACACTA
82848999 GCACACATATCAATGC
129 GCACACATAT-AATGC
* * *** * *
82849015 CGATGCCATGTCCCAGACATGTTCTTACACTAGATCTCATATCGTGGCTGATGTCATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCACATATCAAAGCCGATGACATGTCCTAGA
* *
82849080 CATGGTCTTACACTGGCACACATATCA
66 CATGGTCTTACACTGGCTCTCATATCA
82849107 CCCAAATGTC
Statistics
Matches: 197, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
143 5 0.03
144 188 0.95
145 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (143 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGATCACATATCAAAGCCGATGACATGTCCTAGA
CATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACACGGTCTTACACTAGC
ACACATATAATGC
Found at i:82851770 original size:20 final size:21
Alignment explanation
Indices: 82851745--82851783 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82851735 TCCTTAAGAC
*
82851745 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
82851765 AGGGCAACACGCCCATGTG
1 AGGGCAACACGCCCATGTG
82851784 ACCAACGCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:82852982 original size:47 final size:48
Alignment explanation
Indices: 82852913--82853183 Score: 224
Period size: 46 Copynumber: 5.8 Consensus size: 48
82852903 TGGGTAAGGT
* * *
82852913 GTCGATGCCATATCCTAGACATGGTCTTACACTGGCTCAT-ATCTTAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* *
82852960 GTCGATGCCATATCCCAGACATGGTCTTACACTGACT-ATCATCTCATA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-A
* * * *
82853008 -TTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AA
* * * * *
82853053 GCCGATG-CATGTCCTAAACAT-GTCTTACACTAGCTC-TCGTCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * ***
82853098 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTG
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCAA
* * *
82853147 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
82853184 CAAAAAATGA
Statistics
Matches: 188, Mismatches: 25, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
45 19 0.10
46 73 0.39
47 71 0.38
48 24 0.13
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
Found at i:82853155 original size:94 final size:92
Alignment explanation
Indices: 82853010--82853182 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 92
82853000 ATCTCATATT
* * * *
82853010 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAAACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAACATG
82853075 TCTTACACTAGCTCTCGTCTCAATGCC
66 TCTTACACTAGCTCTCGTCTCAATGCC
* *
82853102 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCAATGCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCATGTCCCAAA
82853165 CATGTCTTACACTAGCTC
62 CATGTCTTACACTAGCTC
82853183 ACAAAAAATG
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 51 0.72
95 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAACATG
TCTTACACTAGCTCTCGTCTCAATGCC
Found at i:82856012 original size:12 final size:12
Alignment explanation
Indices: 82855995--82856026 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
82855985 CGGGTGGTAG
82855995 TCGATAATCAAC
1 TCGATAATCAAC
82856007 TCGATAATCAAC
1 TCGATAATCAAC
82856019 TCG-TAATC
1 TCGATAATC
82856027 TTTTATTAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28
Consensus pattern (12 bp):
TCGATAATCAAC
Found at i:82860742 original size:14 final size:14
Alignment explanation
Indices: 82860723--82860752 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82860713 ACTTGCTTAC
82860723 GTCTCGAGGCCAAT
1 GTCTCGAGGCCAAT
*
82860737 GTCTCGAGGCCGAT
1 GTCTCGAGGCCAAT
82860751 GT
1 GT
82860753 ATGTCCCAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (14 bp):
GTCTCGAGGCCAAT
Found at i:82860874 original size:46 final size:45
Alignment explanation
Indices: 82860745--82860874 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 45
82860735 ATGTCTCGAG
* * *
82860745 GCCGATGTATGTCCCAGACATGTCTTACACTAACTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TATCAAT
*
82860791 GCCGATGCTCTGTCCCAGACATGTTCTTACACTAGCTCT-TAT-AATGT
1 GCCGATGC-ATGTCCCAGACATG-TCTTACACTAGCTCTCTATCAA--T
82860838 GACCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 G-CCGATGCATGTCCCAGACATGTCTTACACTAGCTC
82860875 ACAAACAAAT
Statistics
Matches: 74, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.03
46 23 0.31
47 28 0.38
48 21 0.28
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTATCAAT
Found at i:82862478 original size:27 final size:27
Alignment explanation
Indices: 82862448--82862625 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82862438 ATATTGAGTC
* * * *
82862448 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
82862475 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82862502 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
82862530 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
82862557 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
82862584 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82862611 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82862626 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:82862587 original size:82 final size:81
Alignment explanation
Indices: 82862469--82862624 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82862459 TGCTATATAA
* *
82862469 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
82862534 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
82862551 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
82862615 CACTTAGTGC
65 CACTTAGTGC
82862625 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:82870556 original size:27 final size:27
Alignment explanation
Indices: 82870526--82870703 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82870516 ATATTGAGTC
* * * *
82870526 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
82870553 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82870580 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
82870608 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
82870635 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
82870662 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82870689 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82870704 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:82870665 original size:82 final size:81
Alignment explanation
Indices: 82870547--82870702 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82870537 TGCTATATAA
* *
82870547 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
82870612 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
82870629 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
82870693 CACTTAGTGC
65 CACTTAGTGC
82870703 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:82875414 original size:20 final size:20
Alignment explanation
Indices: 82875391--82875429 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82875381 TATCAATACT
*
82875391 TTTCTTAAGATATCGATATA
1 TTTCATAAGATATCGATATA
*
82875411 TTTCATAAGGTATCGATAT
1 TTTCATAAGATATCGATAT
82875430 TCCTACTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (20 bp):
TTTCATAAGATATCGATATA
Found at i:82879061 original size:31 final size:31
Alignment explanation
Indices: 82879009--82879096 Score: 106
Period size: 31 Copynumber: 2.9 Consensus size: 31
82878999 TATGCCTTTA
* *
82879009 TAATGATTTAAA-ATAAATTTTTTAATAATT
1 TAATAATTTAAATATAAATTTTTTAATAATG
* *
82879039 TAATAATTTAAATAAAAATTTTTAAATAATG
1 TAATAATTTAAATATAAATTTTTTAATAATG
* * *
82879070 TAATAATCTAATTATATATTTTTTAAT
1 TAATAATTTAAATATAAATTTTTTAAT
82879097 TAAGTGATTA
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
30 11 0.23
31 37 0.77
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (31 bp):
TAATAATTTAAATATAAATTTTTTAATAATG
Found at i:82880310 original size:24 final size:24
Alignment explanation
Indices: 82880262--82880310 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
82880252 CACTCGTAAA
*
82880262 TCGGATTCCGATTCTGGTTCGGGT
1 TCGGATTCCGATTCTGGTTCAGGT
*
82880286 TCGGGTTCCGATTC-GGATTCAGGT
1 TCGGATTCCGATTCTGG-TTCAGGT
82880310 T
1 T
82880311 AGGGAGCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.10, C:0.20, G:0.33, T:0.37
Consensus pattern (24 bp):
TCGGATTCCGATTCTGGTTCAGGT
Found at i:82883249 original size:38 final size:38
Alignment explanation
Indices: 82883198--82883275 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
82883188 TTGTTCTTGA
82883198 ATATAAACTTAATAAATTTTAGTAACCAAAAAAAAAGT
1 ATATAAACTTAATAAATTTTAGTAACCAAAAAAAAAGT
82883236 ATATAAACTTAATAAATTTTAGTAACCAAAAAAAAAGT
1 ATATAAACTTAATAAATTTTAGTAACCAAAAAAAAAGT
82883274 AT
1 AT
82883276 CGGGCAGTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.29
Consensus pattern (38 bp):
ATATAAACTTAATAAATTTTAGTAACCAAAAAAAAAGT
Found at i:82887270 original size:25 final size:25
Alignment explanation
Indices: 82887236--82887284 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
82887226 TTCTAAATTG
82887236 TGAAGTCTGACTAAAACCTTTATTC
1 TGAAGTCTGACTAAAACCTTTATTC
82887261 TGAAGTCTGACTAAAACCTTTATT
1 TGAAGTCTGACTAAAACCTTTATT
82887285 TGTCCTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (25 bp):
TGAAGTCTGACTAAAACCTTTATTC
Found at i:82888126 original size:71 final size:71
Alignment explanation
Indices: 82888005--82888144 Score: 226
Period size: 71 Copynumber: 2.0 Consensus size: 71
82887995 AATTGTGAAG
* * ** *
82888005 GAGATTGGTTGATATGTTAGAGCTCAAATGCTTTATATGGTAAGTTGAATGTTGTTGTCGGACAA
1 GAGATTGATTGATATGTTAGAGCTCAAATACTTTATATGGTAAGAGGAATGTTGTTGCCGGACAA
82888070 GTCTAT
66 GTCTAT
*
82888076 GAGATTGATTGATATGTTAGAGCTCAAATACTTTATATGGTAAGAGGAATGTTGTTGCCTGACAA
1 GAGATTGATTGATATGTTAGAGCTCAAATACTTTATATGGTAAGAGGAATGTTGTTGCCGGACAA
82888141 GTCT
66 GTCT
82888145 GTCAAGAAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.36
Consensus pattern (71 bp):
GAGATTGATTGATATGTTAGAGCTCAAATACTTTATATGGTAAGAGGAATGTTGTTGCCGGACAA
GTCTAT
Found at i:82890788 original size:28 final size:27
Alignment explanation
Indices: 82890724--82890931 Score: 326
Period size: 28 Copynumber: 7.6 Consensus size: 27
82890714 TTATTAAGTC
* * *
82890724 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
82890751 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
82890779 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
82890806 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
82890834 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
82890862 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
82890890 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
82890917 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82890932 GCACAATTTA
Statistics
Matches: 173, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
27 66 0.38
28 107 0.62
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:82890808 original size:55 final size:55
Alignment explanation
Indices: 82890724--82890931 Score: 344
Period size: 55 Copynumber: 3.8 Consensus size: 55
82890714 TTATTAAGTC
* * * *
82890724 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
82890779 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAAACT
82890834 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAGTCAAACT
* *
82890890 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
82890932 GCACAATTTA
Statistics
Matches: 144, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
55 90 0.62
56 54 0.38
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:82890844 original size:83 final size:83
Alignment explanation
Indices: 82890724--82890956 Score: 360
Period size: 83 Copynumber: 2.8 Consensus size: 83
82890714 TTATTAAGTC
* * * *
82890724 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
82890789 GTGCTACATAGTC-AACT
66 GTGCTACATAGTCAAACT
82890806 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
82890871 AGTGCTACATAGTCAAACT
65 AGTGCTACATAGTCAAACT
* * * * *
82890890 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACCCGCACACTT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACTCGCACACTT
82890955 AG
65 AG
82890957 CGCCAATCTC
Statistics
Matches: 139, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
82 20 0.14
83 76 0.55
84 43 0.31
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (83 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAAACT
Found at i:82904886 original size:41 final size:42
Alignment explanation
Indices: 82904841--82904920 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 42
82904831 ATGCAGGGGA
*
82904841 CACATGGTCT-ATCAACATGCCCGTGTG-CAAGCCGTGTGTCT
1 CACATGGTCTAATC-ACAAGCCCGTGTGACAAGCCGTGTGTCT
* *
82904882 CACATGGTCTAATCACAAGCCTGTGTGACATGCCGTGTG
1 CACATGGTCTAATCACAAGCCCGTGTGACAAGCCGTGTG
82904921 GACTCAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 21 0.62
42 13 0.38
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (42 bp):
CACATGGTCTAATCACAAGCCCGTGTGACAAGCCGTGTGTCT
Found at i:82905641 original size:6 final size:6
Alignment explanation
Indices: 82905627--82905665 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
82905617 GGAATACATC
* * *
82905627 GTAACA GTAATA GTAATA GTAACA GTAATA GTAAAA GTA
1 GTAATA GTAATA GTAATA GTAATA GTAATA GTAATA GTA
82905666 GCAGTAGCAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.51, C:0.05, G:0.18, T:0.26
Consensus pattern (6 bp):
GTAATA
Found at i:82905650 original size:18 final size:18
Alignment explanation
Indices: 82905627--82905671 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
82905617 GGAATACATC
*
82905627 GTAACAGTAATAGTAATA
1 GTAACAGTAATAGTAAAA
82905645 GTAACAGTAATAGTAAAA
1 GTAACAGTAATAGTAAAA
*
82905663 GTAGCAGTA
1 GTAACAGTA
82905672 GCAGTACACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.49, C:0.07, G:0.20, T:0.24
Consensus pattern (18 bp):
GTAACAGTAATAGTAAAA
Found at i:82906539 original size:15 final size:15
Alignment explanation
Indices: 82906519--82906580 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
82906509 AAACCCTATT
*
82906519 TTTCCTTTCTTTTTC
1 TTTCCTTTCTATTTC
82906534 TTTCCTTTCTATTTC
1 TTTCCTTTCTATTTC
* * *
82906549 GTTTTCATTCTCTGTTC
1 -TTTCCTTTCTAT-TTC
*
82906566 TTTCTATTTCTATTT
1 TTTC-CTTTCTATTT
82906581 TGTTTCTTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
15 14 0.39
16 14 0.39
17 8 0.22
ACGTcount: A:0.06, C:0.23, G:0.03, T:0.68
Consensus pattern (15 bp):
TTTCCTTTCTATTTC
Found at i:82906661 original size:17 final size:17
Alignment explanation
Indices: 82906639--82906672 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82906629 AAAACTCAAA
82906639 AATAAAATACGAGAAAT
1 AATAAAATACGAGAAAT
82906656 AATAAAATACGAGAAAT
1 AATAAAATACGAGAAAT
82906673 CAACATCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (17 bp):
AATAAAATACGAGAAAT
Found at i:82908620 original size:19 final size:20
Alignment explanation
Indices: 82908578--82908621 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
82908568 CCATATTAAC
** *
82908578 ACAGTTGGGCCCATTTCAAG
1 ACAGTTGGGCCCATAACAAA
82908598 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
82908617 ACAGT
1 ACAGT
82908622 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.20
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:82914830 original size:44 final size:41
Alignment explanation
Indices: 82914728--82914835 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 41
82914718 GTAACTCAGT
* * *
82914728 ATCAATGCCTCTGTCCCAAACAGGGTCTTACACGAAATCAG
1 ATCAATGCCTATGTCCCAGACAGGGTCTTACACGAAATCAA
* *
82914769 ATACGATGCCTATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 AT-CAATGCCTATGTCCCAGACAGGGTCTTACACG-AAA--TCAA
*
82914814 ATCAAGGCCTATGTCCCAGACA
1 ATCAATGCCTATGTCCCAGACA
82914836 CGATCTTATA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
41 2 0.04
42 28 0.50
43 3 0.05
44 18 0.32
45 5 0.09
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (41 bp):
ATCAATGCCTATGTCCCAGACAGGGTCTTACACGAAATCAA
Found at i:82916541 original size:27 final size:27
Alignment explanation
Indices: 82916511--82916563 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
82916501 TATTGATATA
82916511 ATTATATCAATT-TTATTATATTTTAAT
1 ATTATATC-ATTATTATTATATTTTAAT
* *
82916538 ATTATTTCATTATTATTATTTTTTAA
1 ATTATATCATTATTATTATATTTTAA
82916564 ATTTTCAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 3 0.13
27 20 0.87
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTATATCATTATTATTATATTTTAAT
Found at i:82917535 original size:33 final size:33
Alignment explanation
Indices: 82917497--82917563 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
82917487 ACTTAATATC
* *
82917497 TGTTTTGAAGCAACAACTTTTGTTTAA-AATAGT
1 TGTTTTGAAG-AACAACTATTGTTCAAGAATAGT
**
82917530 TGTTTTTCAGAACAACTATTGTTCAAGAATAGT
1 TGTTTTGAAGAACAACTATTGTTCAAGAATAGT
82917563 T
1 T
82917564 ATGTCTTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTTTTGAAGAACAACTATTGTTCAAGAATAGT
Found at i:82919686 original size:27 final size:26
Alignment explanation
Indices: 82919624--82919735 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
82919614 AGCATGGCTG
* *
82919624 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
82919650 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
82919678 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
82919705 CCAGATCAGATAATCGTGGCATAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
82919732 CCAG
1 CCAG
82919736 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:82919688 original size:54 final size:54
Alignment explanation
Indices: 82919624--82919735 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
82919614 AGCATGGCTG
* *
82919624 CCAGAACAGATA-ATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* *
82919678 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
82919732 CCAG
1 CCAG
82919736 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:82921384 original size:26 final size:26
Alignment explanation
Indices: 82921348--82921457 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
82921338 CATGAAATTC
82921348 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
82921374 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
82921400 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* **
82921426 TTATCATGGAACATTTACCTAACATA
1 TTATCATGAAACATTTACCTAACCCA
82921452 TTATCA
1 TTATCA
82921458 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:82922835 original size:20 final size:20
Alignment explanation
Indices: 82922786--82922824 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82922776 TACAAGATTG
* *
82922786 CACTTTGGTGTCTCTATTTT
1 CACTATGGTGTCTTTATTTT
82922806 CACTATGGTGTCTTTATTT
1 CACTATGGTGTCTTTATTT
82922825 GTACTCTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.18, G:0.15, T:0.54
Consensus pattern (20 bp):
CACTATGGTGTCTTTATTTT
Found at i:82925029 original size:16 final size:16
Alignment explanation
Indices: 82925000--82925042 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
82924990 ATAATTCTAC
* *
82925000 TTATATAATGTAAAAT
1 TTATATATTTTAAAAT
*
82925016 TTATATATTTTAAACT
1 TTATATATTTTAAAAT
*
82925032 TAATATATTTT
1 TTATATATTTT
82925043 TTGAAAATGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (16 bp):
TTATATATTTTAAAAT
Found at i:82927063 original size:16 final size:16
Alignment explanation
Indices: 82927039--82927091 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
82927029 ATTTTGGTTA
*
82927039 TTTAATTATTAAATAT
1 TTTAGTTATTAAATAT
*
82927055 TTTAGTTATTTAAT-T
1 TTTAGTTATTAAATAT
* **
82927070 TTTTGAAATTAAATAT
1 TTTAGTTATTAAATAT
82927086 TTTAGT
1 TTTAGT
82927092 CACTCATCTG
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
15 11 0.39
16 17 0.61
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
TTTAGTTATTAAATAT
Found at i:82927315 original size:18 final size:17
Alignment explanation
Indices: 82927292--82927325 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
82927282 ATTTAAAAAG
*
82927292 AAATTATAAATTATAAAC
1 AAATTA-AAAATATAAAC
82927310 AAATTAAAAATATAAA
1 AAATTAAAAATATAAA
82927326 TATAAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAATTAAAAATATAAAC
Found at i:82927330 original size:30 final size:30
Alignment explanation
Indices: 82927269--82927331 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
82927259 TTAACTATAA
*
82927269 AAATTATAAAAATATTTAAAAAGAAATTAT
1 AAATTATAAAAATATTTAAAAAGAAAATAT
*
82927299 AAATTATAAACAA-A-TTAAAAATATAAATAT
1 AAATTATAAA-AATATTTAAAAAGA-AAATAT
82927329 AAA
1 AAA
82927332 AATATTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.28
30 19 0.66
31 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (30 bp):
AAATTATAAAAATATTTAAAAAGAAAATAT
Found at i:82929203 original size:87 final size:86
Alignment explanation
Indices: 82929052--82929214 Score: 272
Period size: 87 Copynumber: 1.9 Consensus size: 86
82929042 TTAAATTCTG
*
82929052 TGAATTCATCAAGTCCATCTCATTAGGACCACCCAAACTCTAGGATATGAACTCATTAAAAGTAA
1 TGAATTCATCAAGTCCATCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAAAGTAA
82929117 GAAACTTAACCTCACATATCAA
66 G-AACTTAACCTCACATATCAA
* * * *
82929139 TGAATTCATCAAGTCCATCTCAATAGGACCACCCAAACTGTGGGATATGAATTCATTAAGAGTAA
1 TGAATTCATCAAGTCCATCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAAAGTAA
82929204 GAACTTAACCT
66 GAACTTAACCT
82929215 TAGCATGTAC
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
86 10 0.14
87 61 0.86
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (86 bp):
TGAATTCATCAAGTCCATCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAAAGTAA
GAACTTAACCTCACATATCAA
Found at i:82945055 original size:29 final size:29
Alignment explanation
Indices: 82944992--82945059 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
82944982 TAATCAACCA
82944992 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
82945021 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
82945050 CGCACACTTA
1 CGCACACTTA
82945060 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:82945171 original size:173 final size:173
Alignment explanation
Indices: 82944882--82945207 Score: 555
Period size: 173 Copynumber: 1.9 Consensus size: 173
82944872 AACTCAAGGT
* *
82944882 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * *
82944947 TAAAATATATATTGGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGCA
66 GAAAATATATATTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGCA
82945012 CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
82945055 ACTTACCTTTTCCGCTGTCC-AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * *
82945119 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTT-GCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
82945184 ACTTTAAACTCGCACACTTAGTGC
130 ACTTTAAACTCACACACTTAGTGC
82945208 TGTACAATTT
Statistics
Matches: 143, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
172 59 0.41
173 84 0.59
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (173 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGCA
CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:82945237 original size:29 final size:27
Alignment explanation
Indices: 82945160--82945238 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 27
82945150 CTTAATAATC
82945160 AACCGCGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTG-C-TGTACTTTA
*
82945190 AACTCGCACACTTAGTGCTGTACAATTTA
1 AACCCGCACACTTAGTGCTGTAC--TTTA
82945219 AACCCGCACACTTAGTGCTG
1 AACCCGCACACTTAGTGCTG
82945239 AAAACCAGCC
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
27 5 0.11
28 1 0.02
29 36 0.80
30 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
AACCCGCACACTTAGTGCTGTACTTTA
Found at i:82953789 original size:4 final size:4
Alignment explanation
Indices: 82953770--82953805 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
82953760 AGCCTTCAAA
*
82953770 AAAT AATAT TAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAA
82953806 GACTGTTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 26 0.90
5 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:82954411 original size:4 final size:5
Alignment explanation
Indices: 82954393--82954426 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
82954383 TAAGAAGATA
*
82954393 TTATT TTATT TTA-T TTATT TTATT TTAAT TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT
82954427 AGATTAGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:82954412 original size:14 final size:15
Alignment explanation
Indices: 82954393--82954426 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
82954383 TAAGAAGATA
82954393 TTATTTTATTTT-AT
1 TTATTTTATTTTAAT
82954407 TTATTTTATTTTAAT
1 TTATTTTATTTTAAT
82954422 TTATT
1 TTATT
82954427 AGATTAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTATTTTATTTTAAT
Found at i:82957026 original size:22 final size:22
Alignment explanation
Indices: 82956975--82957036 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
82956965 TGACACACAT
* *
82956975 CCTGTGTTGAGTCGTAACAGCC
1 CCTGTGTTGAGCCGTAGCAGCC
* * *
82956997 CTTATGTTTAGCCGTAGCAGCC
1 CCTGTGTTGAGCCGTAGCAGCC
*
82957019 CCTGTGTTGAGCCATAGC
1 CCTGTGTTGAGCCGTAGC
82957037 CTGAACGTGG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.18, C:0.27, G:0.26, T:0.29
Consensus pattern (22 bp):
CCTGTGTTGAGCCGTAGCAGCC
Found at i:82964208 original size:24 final size:23
Alignment explanation
Indices: 82964181--82964287 Score: 64
Period size: 23 Copynumber: 4.7 Consensus size: 23
82964171 ATGCTACAGA
*
82964181 GCTTTTACAGAATGCAT-CACAAAG
1 GCTTTAACAGAAT--ATCCACAAAG
82964205 GC-TTAACAGAATATGCCACAAAG
1 GCTTTAACAGAATAT-CCACAAAG
* *
82964228 GCTTTATA-A-AATAGGCCGCAAAG
1 GCTTTA-ACAGAATA-TCCACAAAG
* * *
82964251 GC-TTAATAGAATGTGCCATAAAG
1 GCTTTAACAGAATAT-CCACAAAG
82964274 GC-TTAACAGAATAT
1 GCTTTAACAGAATAT
82964288 TACATGTTTA
Statistics
Matches: 66, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
21 3 0.05
22 4 0.06
23 52 0.79
24 6 0.09
25 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (23 bp):
GCTTTAACAGAATATCCACAAAG
Found at i:82964224 original size:23 final size:23
Alignment explanation
Indices: 82964198--82964287 Score: 108
Period size: 23 Copynumber: 3.9 Consensus size: 23
82964188 CAGAATGCAT
82964198 CACAAAGGCTTAACAGAATATGC
1 CACAAAGGCTTAACAGAATATGC
* * * *
82964221 CACAAAGGCTTTATAAAATAGGC
1 CACAAAGGCTTAACAGAATATGC
* * *
82964244 CGCAAAGGCTTAATAGAATGTGC
1 CACAAAGGCTTAACAGAATATGC
*
82964267 CATAAAGGCTTAACAGAATAT
1 CACAAAGGCTTAACAGAATAT
82964288 TACATGTTTA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (23 bp):
CACAAAGGCTTAACAGAATATGC
Found at i:82974165 original size:34 final size:33
Alignment explanation
Indices: 82974104--82974167 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
82974094 ATGTTTGCAT
*
82974104 ACTGTACTGAAATAGGCTAAGGTCCAGACTACC
1 ACTGTACTGAAATAGGCTAAGGCCCAGACTACC
* *
82974137 ACTGATACTGAAATGGGCTCAGGCCCAGACT
1 ACTG-TACTGAAATAGGCTAAGGCCCAGACT
82974168 GTTACCGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.20
Consensus pattern (33 bp):
ACTGTACTGAAATAGGCTAAGGCCCAGACTACC
Found at i:82990716 original size:29 final size:27
Alignment explanation
Indices: 82990683--82990761 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 27
82990673 GGTTGGTTTT
82990683 CAGCACTAAGTGTGCGGGTTTAAATTGTA
1 CAGCACTAAGTGTGCGGGTTTAAA--GTA
*
82990712 CAGCACTAAGTGTGCGAGTTTAAAGTA
1 CAGCACTAAGTGTGCGGGTTTAAAGTA
82990739 CATGGCACTAAGTGTGCGCGGTT
1 CA--GCACTAAGTGTGCG-GGTT
82990762 GATTATTAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
27 5 0.11
29 37 0.82
30 3 0.07
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
CAGCACTAAGTGTGCGGGTTTAAAGTA
Found at i:82991029 original size:173 final size:174
Alignment explanation
Indices: 82990714--82991040 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
82990704 AAATTGTACA
* *
82990714 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
82990779 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
82990844 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
82990888 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
82990953 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
82991017 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
82991041 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:82994104 original size:19 final size:19
Alignment explanation
Indices: 82994080--82994116 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
82994070 TGGATCAATC
82994080 GGCTTTCTTCTAGTAATTT
1 GGCTTTCTTCTAGTAATTT
82994099 GGCTTTCTTCTAGTAATT
1 GGCTTTCTTCTAGTAATT
82994117 CCTTGCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.51
Consensus pattern (19 bp):
GGCTTTCTTCTAGTAATTT
Found at i:83011113 original size:40 final size:40
Alignment explanation
Indices: 83011058--83011285 Score: 420
Period size: 40 Copynumber: 5.7 Consensus size: 40
83011048 GAGCATTGGA
83011058 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
83011098 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
83011138 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
83011178 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
83011218 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
83011258 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
83011286 ATGTGTTTGC
Statistics
Matches: 183, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 183 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:83014957 original size:16 final size:18
Alignment explanation
Indices: 83014923--83014960 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
83014913 ATCCTTATTT
*
83014923 AAATAAAATATAATGGTA
1 AAATAAAATATAATAGTA
83014941 AAATAAAATA-AA-AGTA
1 AAATAAAATATAATAGTA
83014957 AAAT
1 AAAT
83014961 CCAAATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
18 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAATATAATAGTA
Found at i:83019794 original size:11 final size:11
Alignment explanation
Indices: 83019775--83019807 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
83019765 ATTAAACCAT
*
83019775 TATTA-TTAAC
1 TATTATTTAAA
83019785 TATTATTTAAA
1 TATTATTTAAA
83019796 TATTATTTAAA
1 TATTATTTAAA
83019807 T
1 T
83019808 TGGATAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (11 bp):
TATTATTTAAA
Found at i:83019998 original size:13 final size:13
Alignment explanation
Indices: 83019982--83020007 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83019972 AAAATTCCAT
83019982 AAAAAAAAAGAAA
1 AAAAAAAAAGAAA
83019995 AAAAAAAAAGAAA
1 AAAAAAAAAGAAA
83020008 GAAAGTTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGAAA
Found at i:83025844 original size:34 final size:34
Alignment explanation
Indices: 83025774--83025844 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 34
83025764 TGCTGGGTTG
* * **
83025774 TATGGCTGAGTGTTGTGCAAATGACGTGTTACTC
1 TATGGCTAAGTGTGGTGCAAATGACGAATTACTC
* * *
83025808 TATGGCTAAGTGTGGTTCAAATGATGAATTATTC
1 TATGGCTAAGTGTGGTGCAAATGACGAATTACTC
83025842 TAT
1 TAT
83025845 AGTTGAATGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.38
Consensus pattern (34 bp):
TATGGCTAAGTGTGGTGCAAATGACGAATTACTC
Found at i:83027745 original size:13 final size:13
Alignment explanation
Indices: 83027727--83027752 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83027717 AAATAAAGTG
83027727 ATAAAAATAAAAA
1 ATAAAAATAAAAA
83027740 ATAAAAATAAAAA
1 ATAAAAATAAAAA
83027753 TGCAAGACGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
ATAAAAATAAAAA
Found at i:83030423 original size:42 final size:42
Alignment explanation
Indices: 83030333--83030425 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
83030323 TACCGTATCA
*
83030333 ATGCCATATCCTGGACATGGTCTTACATGAAATATCATATCG
1 ATGCCATATCCTGGACATGGTCTTACATGAAATATCAAATCG
* * * *
83030375 ACGCCATGTCCTTGACATGGTCTTATATGAAATCA-CACAAT-G
1 ATGCCATATCCTGGACATGGTCTTACATGAAAT-ATCA-AATCG
83030417 ATGCCATAT
1 ATGCCATAT
83030426 ACCAGATATG
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
42 39 0.93
43 3 0.07
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCTGGACATGGTCTTACATGAAATATCAAATCG
Found at i:83031528 original size:13 final size:13
Alignment explanation
Indices: 83031512--83031537 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83031502 GCCCAAATGT
83031512 CAAAATTTTCAAA
1 CAAAATTTTCAAA
83031525 CAAAATTTTCAAA
1 CAAAATTTTCAAA
83031538 AAATCATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
CAAAATTTTCAAA
Found at i:83033000 original size:44 final size:44
Alignment explanation
Indices: 83032924--83033043 Score: 116
Period size: 44 Copynumber: 2.7 Consensus size: 44
83032914 TCATTCCAAC
* * * * *
83032924 CCACTGCAATTTTCAGGAATATAAGAATTGTAA-TTTCAGTCTACT
1 CCACTGCAA-CTTCAGGGAGATCAGACTTGTAACTTT-AGTCTACT
* * * *
83032969 CCATTGTAACTTCAGGGAGATCAGACTTGTAACTTTTGTCTGCT
1 CCACTGCAACTTCAGGGAGATCAGACTTGTAACTTTAGTCTACT
* *
83033013 CCACTGCAACTTTAGGGAGATGAGACTTGTA
1 CCACTGCAACTTCAGGGAGATCAGACTTGTA
83033044 TCTTCAATTT
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
44 51 0.84
45 10 0.16
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATCAGACTTGTAACTTTAGTCTACT
Found at i:83033129 original size:51 final size:52
Alignment explanation
Indices: 83033074--83033186 Score: 176
Period size: 51 Copynumber: 2.2 Consensus size: 52
83033064 AACTTTAGAG
83033074 AGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAAATTCA-GGA
1 AGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAAATTCAGGGA
* * * *
83033125 AGATAAGATTTGTAACTTGTAGCTTTAATCTTTTCCATTGCAACTTTAGGGA
1 AGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAAATTCAGGGA
83033177 A-ATAAGATTT
1 AGATAAGATTT
83033187 TCTATCTTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
51 53 0.93
52 4 0.07
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (52 bp):
AGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAAATTCAGGGA
Found at i:83033212 original size:45 final size:45
Alignment explanation
Indices: 83032963--83033918 Score: 326
Period size: 44 Copynumber: 20.8 Consensus size: 45
83032953 GTAATTTCAG
* * * * * * **
83032963 TCTACTCCATTGTAACTTCAGGGAGATCAGA-CTTGTAACTTTTG
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
* * * * *
83033007 TCTGCTCCACTGCAACTTTAGGGAGATGAGA-CTTGTATCTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
* * *
83033051 TTTACT-CAGCTACAACTTTAGAGAGATAAGATTTGTAACTTGTAGCTTTAA
1 TCTACTCCA-CTGCAACTTTAGGGAGATAAGA--T-T---TTGTAGCTTTAA
** * * *
83033102 TCTGTTCCACTGCAAATTCAGGAAGATAAGATTTGTAACTTGTAGCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGA--T-T---TTGTAGCTTTAA
** * * * *
83033153 TCTTTTCCATTGCAACTTTAGGGAAATAAGATTTTCTATCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
** * * * *
83033198 TCTACTATACTGCAACTTCAGAGAGATGAGA-TTTGTAGCTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
* * * *
83033242 CCTGCTCCACCGTAACTTTAGGGAGATAAGATATGCAACTTGTAGCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGAT-T-----TTGTAGCTTTAA
* * ** *
83033293 TCTACTCCACTGCAACTTCAGGGAAATAAGATTCGGTA-TTTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTT-AA
*
83033338 TCTACTCCATTGCAACTTTAGGGAGATAAGA--TT-T-G---T-A
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
* * ** * * * * * * *
83033375 TCTATTCCATTATAAATTCAGGGAGGTAA-AATTGGTAACTTTGA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
** * *
83033419 TCTTTTCCATTGCAACTTTAGGGAGATAAGATTTGTGGCTTTAAGCTTTAG
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTT-T-G---T-AGCTTTAA
* * * * * *
83033470 TCTATTCCACTACAACTTCA-GGAGATAAGGTTTGCTATGGTAGATCTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAA-GATT--T-T-GTAGCTTTAA
* * * * * *
83033519 TCTAAC-CTACTGCAACTTTAGAGG-TATAGGA-CTTGTCGCTTCAA
1 TCT-ACTCCACTGCAACTTTAG-GGAGATAAGATTTTGTAGCTTTAA
* * ** * * *
83033563 TCTACTCCATTGTAACTCCAAGGAGATAAGA-TTAGTAGCTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
* * * * * *
83033607 TCTGCTCCACTGTAACTTCAGGGAGATAACA-TTAGTAGCTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
* * * *
83033651 TCTATTCCACTGTAACTTCAGGGAGATAAGACTTGTAACTTGTAGCTTTAG
1 TCTACTCCACTGCAACTTTAGGGAGATAAGA--T-T---TTGTAGCTTTAA
* * * *
83033702 TCTATTCCACTGTAACTTCAGGGAGATAAGACTTGCTATGGTAGATTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGA-TT--T-T-GTAGCTTTAA
* * * * * * * * *
83033752 TCTGAC-CTATTACAACTTCAGAGG-TATAGGA-CTTATCG-TTTCAA
1 TCT-ACTCCACTGCAACTTTAG-GGAGATAAGATTTTGTAGCTTT-AA
* **
83033796 TCTGCTCCACTTAAACTTTAGGGAGATAAGA-TTTGTAGCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
* * *
83033840 TCTACTCTACTGCAACTTTAGAGAGATAAGA-TTTGCTATCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTG-TAGCTTTAA
**
83033885 TCTACTCCACTATAACTTTAGGGAGATAAGATTT
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTT
83033919 GCCATAATGA
Statistics
Matches: 688, Mismatches: 166, Indels: 114
0.71 0.17 0.12
Matches are distributed among these distances:
36 1 0.00
37 24 0.03
38 1 0.00
39 2 0.00
42 1 0.00
43 13 0.02
44 275 0.40
45 108 0.16
46 5 0.01
47 1 0.00
48 4 0.01
49 23 0.03
50 43 0.06
51 181 0.26
52 2 0.00
53 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (45 bp):
TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTAGCTTTAA
Found at i:83033325 original size:95 final size:96
Alignment explanation
Indices: 83033192--83033369 Score: 232
Period size: 96 Copynumber: 1.9 Consensus size: 96
83033182 GATTTTCTAT
* * * * * *
83033192 CTTTAATCTACTATACTGCAACTTCAGAGAGATGAGATT-TGTAGCTTCAACCTGCTCCACCGTA
1 CTTTAATCTACTACACTGCAACTTCAGAGAAATAAGATTCGGTAGCTTCAACCTACTCCACCGCA
83033256 ACTTTAGGGAGATAAGATATGCAACTTGTAG
66 ACTTTAGGGAGATAAGATATGCAACTTGTAG
* * ** * **
83033287 CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGATTCGGTATTTTCAATCTACTCCATTGCA
1 CTTTAATCTACTACACTGCAACTTCAGAGAAATAAGATTCGGTAGCTTCAACCTACTCCACCGCA
83033352 ACTTTAGGGAGATAAGAT
66 ACTTTAGGGAGATAAGAT
83033370 TTGTATCTAT
Statistics
Matches: 69, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
95 34 0.49
96 35 0.51
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (96 bp):
CTTTAATCTACTACACTGCAACTTCAGAGAAATAAGATTCGGTAGCTTCAACCTACTCCACCGCA
ACTTTAGGGAGATAAGATATGCAACTTGTAG
Found at i:83033823 original size:233 final size:232
Alignment explanation
Indices: 83033391--83033915 Score: 631
Period size: 233 Copynumber: 2.3 Consensus size: 232
83033381 CCATTATAAA
* * * * * * * *
83033391 TTCAGGGAGGTAAAATTGGTAACTTTGATCTTTTCCATTGCAACTTTAGGGAGATAAGATTTGTG
1 TTCAGGGAGATAAAATTAGTAACTTTAATCTATTCCACTGTAACTTTAGGGAGATAAGACTTGTA
* **
83033456 GCTTTAAGCTTTAGTCTATTCCACTACAACTTCAGGAGATAAGGTTTGCTATGGTAGATCTAATC
66 ACTTTAAGCTTTAGTCTATTCCACTACAACTTCAGGAGATAAGACTTGCTATGGTAGATCTAATC
* * * *
83033521 TAACCTACTGCAACTTTAGAGGTATAGGACTTGTCGCTTCAATCTACTCCATTGTAACTCCAAGG
131 TAACCTACTACAACTTCAGAGGTATAGGACTTATCGCTTCAATCTACTCCATTGAAACTCCAAGG
* *
83033586 AGATAAGATTAGTAGCTTCAATCTGCTCCACTGTAAC
196 AGATAAGATTAGTAGCTTCAATCTACTCCACTGCAAC
* * * *
83033623 TTCAGGGAGATAACATTAGTAGCTTCAATCTATTCCACTGTAACTTCAGGGAGATAAGACTTGTA
1 TTCAGGGAGATAAAATTAGTAACTTTAATCTATTCCACTGTAACTTTAGGGAGATAAGACTTGTA
** *
83033688 ACTTGT-AGCTTTAGTCTATTCCACTGTAACTTCAGGGAGATAAGACTTGCTATGGTAGATTTAA
66 ACTT-TAAGCTTTAGTCTATTCCACTACAACTTCA-GGAGATAAGACTTGCTATGGTAGATCTAA
* * * * **
83033752 TCTGACCTATTACAACTTCAGAGGTATAGGACTTATCGTTTCAATCTGCTCCACTT-AAACTTTA
129 TCTAACCTACTACAACTTCAGAGGTATAGGACTTATCGCTTCAATCTACTCCA-TTGAAACTCCA
* * * *
83033816 GGGAGATAAGATTTGTAGCTTTAATCTACTCTACTGCAAC
193 AGGAGATAAGATTAGTAGCTTCAATCTACTCCACTGCAAC
* * * * * * *
83033856 TTTAGAGAGATAAGATTTGCTATCTTTAATCTACTCCACTATAACTTTAGGGAGATAAGA
1 TTCAGGGAGATAAAATTAG-TAACTTTAATCTATTCCACTGTAACTTTAGGGAGATAAGA
83033916 TTTGCCATAA
Statistics
Matches: 246, Mismatches: 43, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
232 82 0.33
233 127 0.52
234 37 0.15
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (232 bp):
TTCAGGGAGATAAAATTAGTAACTTTAATCTATTCCACTGTAACTTTAGGGAGATAAGACTTGTA
ACTTTAAGCTTTAGTCTATTCCACTACAACTTCAGGAGATAAGACTTGCTATGGTAGATCTAATC
TAACCTACTACAACTTCAGAGGTATAGGACTTATCGCTTCAATCTACTCCATTGAAACTCCAAGG
AGATAAGATTAGTAGCTTCAATCTACTCCACTGCAAC
Found at i:83033919 original size:45 final size:44
Alignment explanation
Indices: 83033785--83033920 Score: 175
Period size: 45 Copynumber: 3.0 Consensus size: 44
83033775 GTATAGGACT
*
83033785 TATCGTTTCAATCTGCTCCACTTAAACTTTAGGGAGATAAGATTTG-
1 TATC-TTT-AATCTACTCCACTT-AACTTTAGGGAGATAAGATTTGC
* * * *
83033831 TAGCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTTGC
1 TATCTTTAATCTACTCCACT-TAACTTTAGGGAGATAAGATTTGC
83033876 TATCTTTAATCTACTCCACTATAACTTTAGGGAGATAAGATTTGC
1 TATCTTTAATCTACTCCACT-TAACTTTAGGGAGATAAGATTTGC
83033921 CATAATGATT
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
44 32 0.41
45 43 0.55
46 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (44 bp):
TATCTTTAATCTACTCCACTTAACTTTAGGGAGATAAGATTTGC
Found at i:83036994 original size:12 final size:13
Alignment explanation
Indices: 83036972--83037000 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
83036962 TAATTAAATG
83036972 AATTAAAAAGCCA
1 AATTAAAAAGCCA
83036985 AATT-AAAAGCCA
1 AATTAAAAAGCCA
83036997 AATT
1 AATT
83037001 TTGTCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:83037907 original size:42 final size:42
Alignment explanation
Indices: 83037835--83037955 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 42
83037825 ACATTAGGGT
* *
83037835 TACTAAGATTATGTGTAATACCATATCTGGGATATGGCATCGA
1 TACT-AGATTACGTGTAAGACCATATCTGGGATATGGCATCGA
* *
83037878 TA-TGAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGA
1 TACT-AGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGA
* *
83037921 TACTAGATTACATGTAAGACTATATCTGGGATATG
1 TACTAGATTACGTGTAAGACCATATCTGGGATATG
83037956 ACATTGGTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
42 27 0.42
43 37 0.57
44 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (42 bp):
TACTAGATTACGTGTAAGACCATATCTGGGATATGGCATCGA
Found at i:83047206 original size:48 final size:48
Alignment explanation
Indices: 83047148--83047284 Score: 265
Period size: 48 Copynumber: 2.9 Consensus size: 48
83047138 ATATACACAC
*
83047148 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83047196 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
83047244 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
83047285 CACATATATA
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.33
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:83051739 original size:6 final size:6
Alignment explanation
Indices: 83051728--83051753 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
83051718 AAATAAAGTG
83051728 ATAAAA ATAAAA ATAAAA ATAAAA AT
1 ATAAAA ATAAAA ATAAAA ATAAAA AT
83051754 GCAAGATGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:83051944 original size:4 final size:4
Alignment explanation
Indices: 83051912--83051965 Score: 56
Period size: 4 Copynumber: 13.8 Consensus size: 4
83051902 ATCTTGTTTG
* * * * *
83051912 TAAA TATA TAAA -AAA TAAG CAAG TAAA TAAA TAAA TAGA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
83051959 TAAA TAA
1 TAAA TAA
83051966 TAGTTATAAG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
3 3 0.07
4 38 0.93
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:83056101 original size:29 final size:29
Alignment explanation
Indices: 83056059--83056147 Score: 117
Period size: 29 Copynumber: 3.1 Consensus size: 29
83056049 AAAGCATGAC
* *
83056059 TATGTATGTGATTTGGGCCTAATGGGCGA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
83056088 TATGAATGTGATTTGAGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* **
83056117 TATGAATGAGA-TTGGGCCTTGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
83056145 TAT
1 TAT
83056148 ACATATATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 17 0.32
29 36 0.68
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.33
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:83062364 original size:48 final size:45
Alignment explanation
Indices: 83062266--83062524 Score: 195
Period size: 46 Copynumber: 5.5 Consensus size: 45
83062256 TTTGTGCGCT
** *** *
83062266 AGTGTAAGACATGTCTGGGACATGCATTAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTGA-GATGAGAGCC
* *
83062312 AGTGTAAGACCATGTCTGGGATATGGCAAT-GGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GC-ATCGGC-TTGAGATGAGAGCC
* * *
83062360 AGTGTAAGACATGTCTGGGGCATGCGTCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTTGAGATG-AGAGCC
* *
83062406 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-TGAGATGAGAGCC
*
83062450 AGTGTAAGAGCATGTCTGGGACATGGCATCAGG-ATGAAGATATGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GGCTTG-AG--ATGAGAGCC
* * *
83062500 AATGTAAGGCCATGTCTAGGACATG
1 AGTGTAA-GACATGTCTGGGACATG
83062525 GCATTGGCCT
Statistics
Matches: 172, Mismatches: 23, Indels: 33
0.75 0.10 0.14
Matches are distributed among these distances:
44 11 0.06
45 19 0.11
46 63 0.37
47 29 0.17
48 23 0.13
49 4 0.02
50 22 0.13
51 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGATGAGAGCC
Found at i:83072857 original size:47 final size:48
Alignment explanation
Indices: 83072789--83073151 Score: 210
Period size: 47 Copynumber: 7.7 Consensus size: 48
83072779 TTTGTGCGCT
83072789 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * *
83072835 AGTGTAAGAACATGTCTAGGACATGGCAAC-G--ACATTGAGACGAGAGCT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCCACATT---ATGAGAGCC
*
83072883 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCACGA-GATGTA-AGCC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCCAC-ATTATG-AGAGCC
* * * *
83072929 AGTGTAAG-AGATGTCTGAGG-CAT-GCATCGG-C-TATGA-GATGTGTCC
1 AGTGTAAGAACATGTCTG-GGACATGGCATCGGCCACATTATGA-GAG-CC
* * * * ** * *
83072974 -GTGTCAGACCATGTTTGGGACATGGCATTGGGTTGA-AGATGTGAGAGCC
1 AGTGTAAGAACATGTCTGGGACATGGCA-TCGG-CCACA-TTATGAGAGCC
* * * * *
83073023 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGATAGTC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCC
* *
83073072 AGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATGGATGAGCT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCCACATT-AT-GA-GAGCC
* *
83073119 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGC
83073152 ATTACACCCT
Statistics
Matches: 247, Mismatches: 38, Indels: 61
0.71 0.11 0.18
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 13 0.05
45 18 0.07
46 49 0.20
47 67 0.27
48 21 0.09
49 45 0.18
50 29 0.12
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGAACATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:83072944 original size:46 final size:48
Alignment explanation
Indices: 83072789--83073151 Score: 256
Period size: 46 Copynumber: 7.7 Consensus size: 48
83072779 TTTGTGCGCT
*
83072789 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACGA-GATGTAGAGCC
* * * * * *
83072835 AGTGTAAGAACATGTCTAGGACATGGCAAC-GACATTGAGACG-AGAGCT
1 AGTGTAAG-ACATGTCTGGGACATGGCATCGGCCA-CGAGATGTAGAGCC
83072883 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACGAGATGTAGAGCC
* * * *
83072929 AGTGTAAGAGATGTCTGAGG-CAT-GCATCGGCTATGAGATGT-G-TCC
1 AGTGTAAGACATGTCTG-GGACATGGCATCGGCCACGAGATGTAGAGCC
* * * ***
83072974 -GTGTCAGACCATGTTTGGGACATGGCATTGG-GTTGAAGATGTGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACG-AGATGT-AGAGCC
* * * * *
83073023 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-TTTTGATAGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACGAGATGT-AGAGCC
** * *
83073072 AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACTTGATGGATGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACGAGATGTA-GAGCC
*
83073119 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC
83073152 ATTACACCCT
Statistics
Matches: 253, Mismatches: 43, Indels: 39
0.76 0.13 0.12
Matches are distributed among these distances:
44 9 0.04
45 13 0.05
46 69 0.27
47 69 0.27
48 22 0.09
49 40 0.16
50 29 0.11
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCACGAGATGTAGAGCC
Found at i:83073132 original size:96 final size:97
Alignment explanation
Indices: 83072789--83073151 Score: 269
Period size: 94 Copynumber: 3.8 Consensus size: 97
83072779 TTTGTGCGCT
* * * * *
83072789 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATTATGAGAGCCAGTGTAAGAACATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAGA-TGTGAGAGCCAGTGTAAGACCATGTC
* * * * *** *
83072851 TAGGACATGGCAACGACATTGA-GACGAGAG-C
65 TAGGACATGGCATCGGCCTCGATTTTGATAGTC
* *
83072882 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-GAGATGT-A-AGCCAGTGTAAGA-GAT
1 -AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACTTAGATGTGAGAGCCAGTGTAAGACCAT
** *
83072941 GTCTGAGG-CAT-GCATCGG-CT--A-TGAGATGTGTC
62 GTCT-AGGACATGGCATCGGCCTCGATTTTGAT-AGTC
* * * * **
83072973 CGTGTCAGACCATGTTTGGGACATGGCATTGGGTTGAAGATGTGAGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTT--AGATGTGAGAGCCAGTGTAAGACCATGT
*
83073038 CTGGGACATGGCATCGGCCTCGATTTTGATAGTC
64 CTAGGACATGGCATCGGCCTCGATTTTGATAGTC
*
83073072 AGTGTAAGACCATGTCTGGGACATGGCATCGACTT-GATG-GATGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAGATGTGA-GAGCCAGTGTAAGACCATGTC
83073135 TAGGACATGGCATCGGC
65 TAGGACATGGCATCGGC
83073152 ATTACACCCT
Statistics
Matches: 215, Mismatches: 33, Indels: 40
0.75 0.11 0.14
Matches are distributed among these distances:
89 3 0.01
90 8 0.04
91 16 0.07
92 15 0.07
93 10 0.05
94 59 0.27
95 13 0.06
96 49 0.23
97 5 0.02
99 33 0.15
100 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAGATGTGAGAGCCAGTGTAAGACCATGTCT
AGGACATGGCATCGGCCTCGATTTTGATAGTC
Found at i:83078319 original size:20 final size:20
Alignment explanation
Indices: 83078274--83078320 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
83078264 TTACTTTGCT
*
83078274 TTTCTTTTTAGGATATTTTAA
1 TTTC-TTTTAAGATATTTTAA
*
83078295 GTTCTTTTAAGATATTTCT-A
1 TTTCTTTTAAGATATTT-TAA
83078315 TTTCTT
1 TTTCTT
83078321 GCATAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.62
Consensus pattern (20 bp):
TTTCTTTTAAGATATTTTAA
Found at i:83079840 original size:40 final size:40
Alignment explanation
Indices: 83079811--83080036 Score: 206
Period size: 40 Copynumber: 5.7 Consensus size: 40
83079801 GCTCCTCGTT
*
83079811 CAAATGCCTTCGGGACATAGCCCGGATATAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATATAACAACTCGCA
* * * *
83079851 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATATAACAACTCGCA
* * * *
83079891 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATATAACAACTCGCA
* * * ** *
83079931 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATATAACAACTCGCA
* * * * *
83079971 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATATA-ACAAC-TCGCA
* *
83080012 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
83080037 CAGCATTCAA
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 151 0.92
41 11 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATATAACAACTCGCA
Found at i:83079915 original size:80 final size:80
Alignment explanation
Indices: 83079811--83080036 Score: 287
Period size: 80 Copynumber: 2.8 Consensus size: 80
83079801 GCTCCTCGTT
* *
83079811 CAAATGCCTTCGGGACATAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
83079876 ATTTAATAACTCGCA
66 ATTTAATAACTCGCA
* * *
83079891 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
* *
83079956 ATTTAGTATCTCGCA
66 ATTTAATAACTCGCA
* * * * * *
83079971 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATA-ACAAC-TCGCACGAATGCCTTCGGGACTTAACC
83080033 CGGA
63 CGGA
83080037 CAGCATTCAA
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
79 3 0.02
80 119 0.94
81 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
ATTTAATAACTCGCA
Found at i:83080020 original size:120 final size:120
Alignment explanation
Indices: 83079813--83080036 Score: 281
Period size: 120 Copynumber: 1.9 Consensus size: 120
83079803 TCCTCGTTCA
* * *
83079813 AATGCCTTCGGGACATAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATATAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGAT
* * *
83079878 TTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 ATAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * ** * *
83079933 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATATAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGA
* * *
83079997 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
65 TATAATAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
83080037 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
119 3 0.03
120 79 0.91
121 5 0.06
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAACCCGGATATAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGAT
ATAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:83103537 original size:39 final size:38
Alignment explanation
Indices: 83103435--83103577 Score: 171
Period size: 38 Copynumber: 3.7 Consensus size: 38
83103425 ATGAATTGTT
*
83103435 ACACCAGCACGAAGCCTGCTAGGCATC-AAGCCCGATAA
1 ACACCAGCACGAAGCCTGCTAGGC-TCAAAGCTCGATAA
* ** *
83103473 ACACCGGCACGAAGCCTATTAGGCTCAAAGCTCTATAA
1 ACACCAGCACGAAGCCTGCTAGGCTCAAAGCTCGATAA
* * * *
83103511 GTCATCAGCATGAAGCTTGCTAGGCTCAAAGCTCGATAA
1 -ACACCAGCACGAAGCCTGCTAGGCTCAAAGCTCGATAA
*
83103550 ACACCAGCACGATGCCTGCTAGGCTCAA
1 ACACCAGCACGAAGCCTGCTAGGCTCAA
83103578 GGCCCAATAC
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
37 2 0.02
38 53 0.62
39 30 0.35
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (38 bp):
ACACCAGCACGAAGCCTGCTAGGCTCAAAGCTCGATAA
Found at i:83112607 original size:46 final size:44
Alignment explanation
Indices: 83112513--83112676 Score: 172
Period size: 46 Copynumber: 3.6 Consensus size: 44
83112503 TGTGCCAATG
*
83112513 CATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATA
* * *
83112557 CATGTCCTAGACATGTCTTACATTGGCTTACATCTCG-AGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA-GCCGATA
* ** *
83112603 CATGTCCCAGACATGTCTTACACTAGCTC-TCGTC-TCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGATA
83112649 CATGTCCCAGACATGTCTTACACTAGCA
1 CATGTCCCAGACATGTCTTACACTAGCA
83112677 TTTTATAATA
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
43 2 0.02
44 27 0.27
45 1 0.01
46 70 0.70
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATA
Found at i:83124694 original size:40 final size:40
Alignment explanation
Indices: 83124649--83124841 Score: 255
Period size: 40 Copynumber: 4.8 Consensus size: 40
83124639 GGATATAGCT
*
83124649 ACTCGCCCAAATGCCTTTGGGACTTAGCCCGGTCATAGTA
1 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGTCATAGTA
* *
83124689 ACTCGCACAAATGCCTTTGGAACTTAACCCGGTCATAGTA
1 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGTCATAGTA
* * *
83124729 ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTATAGTA
1 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGTCATAGTA
* * * *
83124769 ACTCGCACAATTGCCTTCGGGACTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGTCA-TAGTA
*
83124809 ACTAGCACAAATG-CTTTCGGGACTTAGCCCGGT
1 ACTCGCACAAATGCCTTT-GGGACTTAGCCCGGT
83124842 TATTATCCGA
Statistics
Matches: 137, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
39 4 0.03
40 133 0.97
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTTGGGACTTAGCCCGGTCATAGTA
Found at i:83128974 original size:28 final size:28
Alignment explanation
Indices: 83128908--83129083 Score: 239
Period size: 28 Copynumber: 6.3 Consensus size: 28
83128898 GAGATTGGCG
* * *
83128908 CTAAGTGTGCGGGTTTAAAT-TGTACGGCA
1 CTAAGTGTGCGAGTTTGATTATGTA--GCA
83128937 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
83128965 CTAAGTGTGCGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
83128993 CTAAGTGTGCGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
* *
83129021 CTAAGTGTGCGAGTTTGATTATATATCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
83129049 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
83129076 CTGAGTGT
1 CTAAGTGT
83129084 ACGGACTTAA
Statistics
Matches: 137, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 20 0.15
28 96 0.70
29 17 0.12
30 4 0.03
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:83136425 original size:30 final size:30
Alignment explanation
Indices: 83136386--83136465 Score: 115
Period size: 30 Copynumber: 2.7 Consensus size: 30
83136376 AGCCGAAACT
*
83136386 ATCCCTTTTCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * * *
83136416 ATTCTTTTTCATAGTTCGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
83136446 ATCCCTTTTCATAATTTGAT
1 ATCCCTTTTCATAATTTGAT
83136466 TGCCAAAACT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCATCACC
Found at i:83139991 original size:27 final size:27
Alignment explanation
Indices: 83139938--83140070 Score: 97
Period size: 27 Copynumber: 4.9 Consensus size: 27
83139928 AAAGTCAGTC
*
83139938 CATTCAGAGTTTTCCACAAAGGCTATT
1 CATTCAAAGTTTTCCACAAAGGCTATT
*
83139965 CATTCAAAGTTTTCCATAAAGGCTATT
1 CATTCAAAGTTTTCCACAAAGGCTATT
* * * ** * **
83139992 CTTTCAGAGCTCGCTACAAATACTATT
1 CATTCAAAGTTTTCCACAAAGGCTATT
** **
83140019 TTTTCAAAGTTCACCACAAAGGCTATT
1 CATTCAAAGTTTTCCACAAAGGCTATT
* * *
83140046 CTTTCAGAGTTCAT-CACAAAGGCTA
1 CATTCAAAGTT-TTCCACAAAGGCTA
83140071 ACAAAATGCC
Statistics
Matches: 83, Mismatches: 22, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.33
Consensus pattern (27 bp):
CATTCAAAGTTTTCCACAAAGGCTATT
Found at i:83141778 original size:27 final size:27
Alignment explanation
Indices: 83141748--83141802 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
83141738 ATTTTATGAT
83141748 TATTTTGAGTTCTATGATATGTTTGCA
1 TATTTTGAGTTCTATGATATGTTTGCA
83141775 TATTTTGAGTTCTATGATATGTTTGCA
1 TATTTTGAGTTCTATGATATGTTTGCA
83141802 T
1 T
83141803 GATTGTGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.07, G:0.18, T:0.53
Consensus pattern (27 bp):
TATTTTGAGTTCTATGATATGTTTGCA
Found at i:83147782 original size:64 final size:64
Alignment explanation
Indices: 83147702--83147885 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
83147692 AGACATTATG
* * * *
83147702 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
83147766 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
83147831 AA
63 AA
* * *
83147833 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
83147886 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 21 0.21
67 32 0.33
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:83150407 original size:93 final size:93
Alignment explanation
Indices: 83150248--83150419 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
83150238 GCCCATAAGT
*** *
83150248 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83150313 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
83150341 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83150406 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
83150420 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83150415 original size:46 final size:46
Alignment explanation
Indices: 83150240--83150415 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
83150230 TGTAACCCGC
* *** *
83150240 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
83150286 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
83150336 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
83150379 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83150416 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 63 0.58
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:83152840 original size:15 final size:15
Alignment explanation
Indices: 83152814--83152869 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
83152804 CAAGGAAACC
83152814 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
83152829 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
83152844 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
83152859 GAATAAAGAAA
1 GAATAAAGAAA
83152870 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:83155988 original size:46 final size:46
Alignment explanation
Indices: 83155822--83155997 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
83155812 TGTAACCCGC
* * * *
83155822 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * *
83155868 CCATGAGTGAACTCAAACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
83155918 CTCA-CA---AACTCGGACTCAAATCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
*
83155961 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
83155998 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 8 0.08
44 1 0.01
46 59 0.57
47 24 0.23
49 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:83155993 original size:93 final size:93
Alignment explanation
Indices: 83155831--83156001 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
83155821 CCCATAAGTG
* * * * *
83155831 AACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCAAACTCAACTCAAT
1 AACTCAGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAAACTCAACTCAAC
83155896 GAGTTCGGATGCCTAGTTACATCTCACA
66 GAGTTCGGATGCCTAGTTACATCTCACA
* * * **
83155924 AACTCGGACTCAAATCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAAACTCAACTCAAC
83155989 GAGTTCGGATGCC
66 GAGTTCGGATGCC
83156002 CAAATATCCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCAGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAAACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACA
Found at i:83160540 original size:64 final size:64
Alignment explanation
Indices: 83160460--83160643 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
83160450 AGACATTATG
* * * *
83160460 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
83160524 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
83160589 AA
63 AA
* * *
83160591 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
83160644 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 21 0.21
67 32 0.33
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:83163226 original size:19 final size:19
Alignment explanation
Indices: 83163202--83163239 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
83163192 GTGAAAAGTC
83163202 TGATAAATTTCAAGAGTTT
1 TGATAAATTTCAAGAGTTT
83163221 TGATAAATTTCAAGAGTTT
1 TGATAAATTTCAAGAGTTT
83163240 CGTGCAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (19 bp):
TGATAAATTTCAAGAGTTT
Found at i:83165953 original size:13 final size:13
Alignment explanation
Indices: 83165935--83165959 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83165925 CGGTAGGGTT
83165935 ACGCCCGTGTGAC
1 ACGCCCGTGTGAC
83165948 ACGCCCGTGTGA
1 ACGCCCGTGTGA
83165960 GTCGTGCTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (13 bp):
ACGCCCGTGTGAC
Found at i:83183920 original size:47 final size:47
Alignment explanation
Indices: 83183853--83184196 Score: 526
Period size: 47 Copynumber: 7.3 Consensus size: 47
83183843 CCCTTCGGGA
* * * *
83183853 CTTATCACGTTTATACACTTTCACATCCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
83183900 CTTATCACATATATATACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
83183947 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
83183994 CTTATCACACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** *
83184043 CTTATCACATATATGTACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
83184090 CTTATCACATATATACACTTTTACATTCATCACATTGGCCATTCGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
83184137 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
83184184 CTTATCACATATA
1 CTTATCACATATA
83184197 CATATCTTGT
Statistics
Matches: 269, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
47 225 0.84
49 44 0.16
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:83189709 original size:7 final size:7
Alignment explanation
Indices: 83189697--83189758 Score: 65
Period size: 7 Copynumber: 9.0 Consensus size: 7
83189687 TCATAATTTC
83189697 TAAACCT
1 TAAACCT
83189704 TAAACCT
1 TAAACCT
*
83189711 TAAACCC
1 TAAACCT
83189718 TAAACCT
1 TAAACCT
83189725 TAAACC-
1 TAAACCT
* *
83189731 TAATCAT
1 TAAACCT
83189738 TAAACCT
1 TAAACCT
*
83189745 CAAA-CT
1 TAAACCT
83189751 CTAAACCT
1 -TAAACCT
83189759 AATCTTTGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
6 6 0.14
7 36 0.82
8 2 0.05
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.26
Consensus pattern (7 bp):
TAAACCT
Found at i:83189743 original size:27 final size:26
Alignment explanation
Indices: 83189710--83189785 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 26
83189700 ACCTTAAACC
83189710 TTAAACCCTAAACCTTAAACCTAATCA
1 TTAAA-CCTAAACCTTAAACCTAATCA
*
83189737 TTAAACCTCAAA-CTCTAAACCTAATCT
1 TTAAACCT-AAACCT-TAAACCTAATCA
*
83189764 TTGAATCCTAAATCC-TAAACCT
1 TT-AAACCTAAA-CCTTAAACCT
83189786 TAAACTTGGC
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
26 5 0.12
27 31 0.74
28 5 0.12
29 1 0.02
ACGTcount: A:0.41, C:0.29, G:0.01, T:0.29
Consensus pattern (26 bp):
TTAAACCTAAACCTTAAACCTAATCA
Found at i:83202886 original size:14 final size:14
Alignment explanation
Indices: 83202864--83202894 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
83202854 CTGTGTGTCT
83202864 CACACGGCCAAAGA
1 CACACGGCCAAAGA
*
83202878 CACATGGCCAAAGA
1 CACACGGCCAAAGA
83202892 CAC
1 CAC
83202895 GCTTGTGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.35, G:0.19, T:0.03
Consensus pattern (14 bp):
CACACGGCCAAAGA
Found at i:83203661 original size:242 final size:242
Alignment explanation
Indices: 83203227--83203716 Score: 854
Period size: 242 Copynumber: 2.0 Consensus size: 242
83203217 ATAGGCTATT
* *
83203227 TACCATGCCATCTTTCTCACCCAAATTGCAATCACCTACACCCAACCAAAAGGCATATAATATGG
1 TACCAAGCCATCTTTCTCACCCAAATTGCAATCACCTACACCCAACCAAAAGGCATAGAATATGG
*
83203292 CATAAGTAGGCATTTCAACCAATCTCAACCAAGCCTAATTCATACTAAATCCATACTATCATCTA
66 CATAAGTAGGCATTCCAACCAATCTCAACCAAGCCTAATTCATACTAAATCCATACTATCATCTA
** *
83203357 TATGACATACAAGTATTGCAAATAGTCATTCAATTTCATACCAAATTTACATTCTCAAATCACCT
131 TATGACATACAAGTATCACAAATAGTCATTCAATTTCATACCAAATTCACATTCTCAAATCACCT
83203422 AAATGGTCAATTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
196 AAATGGTCAATTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
* * *
83203469 TACCAAGCGATCTTTCTCACCCAAATTGCAATCACCTACACCTAACCAAAAGGCATAGAATGTGG
1 TACCAAGCCATCTTTCTCACCCAAATTGCAATCACCTACACCCAACCAAAAGGCATAGAATATGG
* * *
83203534 CATAAGTAGGCATTCCAACCAATCTCAACCATGCCTAATTCATGCTAAATCCATACTATCATTTA
66 CATAAGTAGGCATTCCAACCAATCTCAACCAAGCCTAATTCATACTAAATCCATACTATCATCTA
*
83203599 TATGACATACAAGTATCACAAATAGTCATTCAATTTCATACCAAATTCATATTCTCAAATCACCT
131 TATGACATACAAGTATCACAAATAGTCATTCAATTTCATACCAAATTCACATTCTCAAATCACCT
*
83203664 AAATGGTCACTTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
196 AAATGGTCAATTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
83203711 TACCAA
1 TACCAA
83203717 TTCTCAATTT
Statistics
Matches: 234, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
242 234 1.00
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.28
Consensus pattern (242 bp):
TACCAAGCCATCTTTCTCACCCAAATTGCAATCACCTACACCCAACCAAAAGGCATAGAATATGG
CATAAGTAGGCATTCCAACCAATCTCAACCAAGCCTAATTCATACTAAATCCATACTATCATCTA
TATGACATACAAGTATCACAAATAGTCATTCAATTTCATACCAAATTCACATTCTCAAATCACCT
AAATGGTCAATTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
Found at i:83205645 original size:49 final size:49
Alignment explanation
Indices: 83205579--83205822 Score: 290
Period size: 49 Copynumber: 4.9 Consensus size: 49
83205569 TAGCCAAAGC
* * * * *
83205579 TATCTGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
83205628 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
83205677 TATCCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * * * *
83205727 CATCTGATACAGGTAGCAACCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * * *
83205778 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAC
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
83205823 TTCACAATAG
Statistics
Matches: 166, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 89 0.54
50 40 0.24
51 36 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:83205811 original size:101 final size:98
Alignment explanation
Indices: 83205579--83205822 Score: 308
Period size: 101 Copynumber: 2.5 Consensus size: 98
83205569 TAGCCAAAGC
* * * ** *
83205579 TATCTGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAACCATCCGATACACGTAG
* *
83205644 TAGCCTGCACTTAGTACTACACACGTGACCAAT
66 CAACCTGCACTTAGTACTACACACGTGACCAAT
* * * * *
83205677 TATCCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGATACAGGTA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-AACCATCCGATACACGTA
*
83205742 GCAACCTGCACTTAGTACTACACACGTGATCACAGT
65 GCAACCTGCACTTAGTACTACACACGTGA-C-CAAT
* * *
83205778 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
83205823 TTCACAATAG
Statistics
Matches: 123, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 40 0.33
99 40 0.33
100 1 0.01
101 42 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (98 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAACCATCCGATACACGTAG
CAACCTGCACTTAGTACTACACACGTGACCAAT
Found at i:83213797 original size:40 final size:40
Alignment explanation
Indices: 83213749--83213996 Score: 349
Period size: 40 Copynumber: 6.2 Consensus size: 40
83213739 GGGATTTAAT
* *
83213749 CGGATATAGCT-ACTCACTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCACACAAATGCCTTCGGGACTTAGCC
* * *
83213789 CGGATATAGTAACTCGCACCAATGCCTTCGAGACTTAGCC
1 CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
*
83213829 CGGATATAGTAACTCACACAAATGCCTTCAGGACTTAGCC
1 CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
*
83213869 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
*
83213909 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
* *
83213949 CGGA-ACTAGTCACT-AGCGCAAATGCCTTCGGGACTTAGCC
1 CGGATA-TAGTAACTCA-CACAAATGCCTTCGGGACTTAGCC
*
83213989 CGGTTATA
1 CGGATATA
83213997 ATCCAAATAT
Statistics
Matches: 189, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.01
40 186 0.98
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
Done.