Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 252 of 316
Found at i:83216205 original size:31 final size:32
Alignment explanation
Indices: 83216144--83216205 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
83216134 TCAACTAACA
*
83216144 CAACTAACACAACAAATTTTTTCATGCTCTAC
1 CAACTAACACAACAAATTTTTTCATACTCTAC
83216176 CAACTAACACAACAAATTTTTTCA-ACTCTA
1 CAACTAACACAACAAATTTTTTCATACTCTA
83216206 GAATCCTGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 5 0.17
32 24 0.83
ACGTcount: A:0.40, C:0.27, G:0.02, T:0.31
Consensus pattern (32 bp):
CAACTAACACAACAAATTTTTTCATACTCTAC
Found at i:83217697 original size:21 final size:21
Alignment explanation
Indices: 83217671--83217726 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
83217661 AACAACGATG
*
83217671 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
83217692 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
83217713 ACGGTGAGATTAGA
1 GCGGTGAGATTAGA
83217727 AATAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:83223808 original size:175 final size:175
Alignment explanation
Indices: 83223592--83223938 Score: 511
Period size: 175 Copynumber: 2.0 Consensus size: 175
83223582 CACGGCCAAG
* * * * *
83223592 GCACACGCCCGTGTGCTAGGCCTTGCACTTCACACGGCTGAGACACATGGTCGTGTCTCTACCTG
1 GCACACGCCCGTGTACTAGGCCGTGCACTTCACACGGCTGAGACACACGGCCGTGTCTCTACCCG
*
83223657 TGTGTTTACTACCATGCATACTAACTTACAATTCTTACGTGCTA-GGGACACAC-GACCATATCA
66 TGTGTTTACTACCATGCATACTAACTTACAATTCTTACGT-CCAGGGGACACACAG-CCATATCA
* *
83223720 CACGCCGATGTGGTAAACCGTGTGTCACACACGGCCTAGGCACACTA
129 CACGCCCATGTGGTAAACCGTGTGTCACACACGGCCTAGACACACTA
* * *
83223767 GCACACGCCCGTGTACTAGGCCGTG-ACCTTCATAGGGCTGAGACACACGGCCGTGTCTCTTCCC
1 GCACACGCCCGTGTACTAGGCCGTGCA-CTTCACACGGCTGAGACACACGGCCGTGTCTCTACCC
* *
83223831 GTGTGTTTACTACCATGCATATTGACTTACAATTCTTACGTCCAGGGGACACACAGCCATATCAC
65 GTGTGTTTACTACCATGCATACTAACTTACAATTCTTACGTCCAGGGGACACACAGCCATATCAC
**
83223896 ACGCCCATGTGGTAAATTGTGTGTCACACACGGCCTAGACACA
130 ACGCCCATGTGGTAAACCGTGTGTCACACACGGCCTAGACACA
83223939 TGCCGCTGTG
Statistics
Matches: 154, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
174 3 0.02
175 150 0.97
176 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (175 bp):
GCACACGCCCGTGTACTAGGCCGTGCACTTCACACGGCTGAGACACACGGCCGTGTCTCTACCCG
TGTGTTTACTACCATGCATACTAACTTACAATTCTTACGTCCAGGGGACACACAGCCATATCACA
CGCCCATGTGGTAAACCGTGTGTCACACACGGCCTAGACACACTA
Found at i:83236661 original size:41 final size:42
Alignment explanation
Indices: 83236544--83236661 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
83236534 ACCGTTATAA
* * * * * *
83236544 AACATGATCTTTAGTGGCACTTTTTCTACAAATGCCGCTATAG
1 AACATGATCTTTAGCGACGCTTTTT-TACAAACGCCACTAAAG
* * *
83236587 AACGTGATCTTTAGCGATGCTTTTATTACAAACGCCACTAAAT
1 AACATGATCTTTAGCGACGCTTTT-TTACAAACGCCACTAAAG
*
83236630 AACATGATTTTTAGCGACG-TTTTTTACAAACG
1 AACATGATCTTTAGCGACGCTTTTTTACAAACG
83236662 TCGCAAGAGA
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
41 9 0.15
42 4 0.06
43 48 0.77
44 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (42 bp):
AACATGATCTTTAGCGACGCTTTTTTACAAACGCCACTAAAG
Found at i:83239761 original size:16 final size:16
Alignment explanation
Indices: 83239740--83239771 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
83239730 TGTGTAACGC
*
83239740 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
83239756 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
83239772 TCCCGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:83241291 original size:29 final size:29
Alignment explanation
Indices: 83241241--83241355 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
83241231 GTAAGCATGA
* **
83241241 ATATGAATGTGAC-TGGGCCTAACAGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
* *
83241269 ATATAAATGTTATTTGGGCCTAATGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
*
83241298 ATATACATGTGACTTGGGCCTAATGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
* * * *
83241327 ATATGAATATGA-ATGGGCTTAATGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
83241355 A
1 A
83241356 AATCCAGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 25 0.34
29 48 0.66
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGACTTGGGCCTAATGGGCC
Found at i:83241350 original size:57 final size:57
Alignment explanation
Indices: 83241247--83241355 Score: 139
Period size: 57 Copynumber: 1.9 Consensus size: 57
83241237 ATGAATATGA
* * *
83241247 ATGTGACTGGGCCTAACAGGCCATATAAATGTTATTTGGGCCTAATGGGCCATATAC
1 ATGTGACTGGGCCTAACAGGCCATATAAATATGATATGGGCCTAATGGGCCATATAC
** * *
83241304 ATGTGACTTGGGCCTAATGGGCCATATGAATATGA-ATGGGCTTAATGGGCCA
1 ATGTGAC-TGGGCCTAACAGGCCATATAAATATGATATGGGCCTAATGGGCCA
83241356 AATCCAGGTA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
57 22 0.50
58 22 0.50
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (57 bp):
ATGTGACTGGGCCTAACAGGCCATATAAATATGATATGGGCCTAATGGGCCATATAC
Found at i:83245460 original size:24 final size:24
Alignment explanation
Indices: 83245410--83245460 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
83245400 ATGAATTGGC
* * * *
83245410 AAAAGCCGAAATACCGAAATGATG
1 AAAAGCCAAAATACCAAAAAGACG
*
83245434 AAAAGCCAAAATGCCAAAAAGACG
1 AAAAGCCAAAATACCAAAAAGACG
83245458 AAA
1 AAA
83245461 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.18, G:0.18, T:0.08
Consensus pattern (24 bp):
AAAAGCCAAAATACCAAAAAGACG
Found at i:83245611 original size:17 final size:18
Alignment explanation
Indices: 83245579--83245613 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
83245569 ACGAGCCAGA
83245579 ATGGGCTAAATGGGCCCG
1 ATGGGCTAAATGGGCCCG
*
83245597 ATGGGCT-ATTGGGCCCG
1 ATGGGCTAAATGGGCCCG
83245614 TAATAGGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.17, C:0.23, G:0.40, T:0.20
Consensus pattern (18 bp):
ATGGGCTAAATGGGCCCG
Found at i:83245726 original size:29 final size:28
Alignment explanation
Indices: 83245671--83245783 Score: 109
Period size: 29 Copynumber: 4.0 Consensus size: 28
83245661 GTGAGGATGA
* * * *
83245671 ATATGAATGTGACTAGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
83245699 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
83245728 ATATATAGGTGACTTGGGCCTAATGGGTC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
83245757 ATATGAATATGAATGGGCTTAATGGGC
1 ATATAAATGTGATTGGGCCTAATGGGC
83245784 TAGATACAAG
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
28 23 0.33
29 46 0.67
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:83249658 original size:7 final size:7
Alignment explanation
Indices: 83249648--83249679 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
83249638 ATAATATATA
83249648 TATCAAG
1 TATCAAG
83249655 TATCAAG
1 TATCAAG
83249662 TATCAAG
1 TATCAAG
*
83249669 CATCAAG
1 TATCAAG
83249676 TATC
1 TATC
83249680 TAATTATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (7 bp):
TATCAAG
Found at i:83250006 original size:35 final size:34
Alignment explanation
Indices: 83249960--83250057 Score: 139
Period size: 31 Copynumber: 2.9 Consensus size: 34
83249950 TTTTTATATT
*
83249960 CTTTAAATGTTTATGTAAGTTATGATAATCATAAA
1 CTTTAAATGTTTAT-TAAGTTATGATTATCATAAA
83249995 CTTTAAATG--T-TTAAGTTATGATTATCATAAA
1 CTTTAAATGTTTATTAAGTTATGATTATCATAAA
*
83250026 CTTTGAATGTTTATATAAGTTATGATTATCAT
1 CTTTAAATGTTTAT-TAAGTTATGATTATCAT
83250058 CTTTAAATAT
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
31 27 0.47
32 1 0.02
33 2 0.04
34 1 0.02
35 26 0.46
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (34 bp):
CTTTAAATGTTTATTAAGTTATGATTATCATAAA
Found at i:83256945 original size:41 final size:41
Alignment explanation
Indices: 83256856--83256945 Score: 128
Period size: 41 Copynumber: 2.2 Consensus size: 41
83256846 TAAATTCGCG
*
83256856 GCGTTTATGGCAAAAATGCCGCTATTACTTTACCTTTTACA
1 GCGTTTATGGCAAAAACGCCGCTATTACTTTACCTTTTACA
* *
83256897 GCATTTATGGGC-AAAACGCCGCTATTACTTTACCTTTTGCA
1 GCGTTTAT-GGCAAAAACGCCGCTATTACTTTACCTTTTACA
*
83256938 GTGTTTAT
1 GCGTTTAT
83256946 TGTAACACCC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 40 0.93
42 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (41 bp):
GCGTTTATGGCAAAAACGCCGCTATTACTTTACCTTTTACA
Found at i:83260787 original size:27 final size:27
Alignment explanation
Indices: 83260665--83260858 Score: 169
Period size: 27 Copynumber: 7.2 Consensus size: 27
83260655 GGGCAAATCA
* * *
83260665 ATCATTTTACCTTACAGGGGTATTACG
1 ATCATTTTACCCTATAGGGGTATTTCG
* * *
83260692 AACATTTTACCCTACAGGGGTATTACAG
1 ATCATTTTACCCTATAGGGGTATTTC-G
** * *
83260720 A-CATTTTACCCTACCGAGGTATTTAG
1 ATCATTTTACCCTATAGGGGTATTTCG
* * *
83260746 GTCATTTTAACCTATAAGGGTATTTCG
1 ATCATTTTACCCTATAGGGGTATTTCG
* *
83260773 ATCATTTTACCCTAT-GTGCTATTTCG
1 ATCATTTTACCCTATAGGGGTATTTCG
* * *
83260799 GTCATTTTACCCTATGGGGGTATTTTG
1 ATCATTTTACCCTATAGGGGTATTTCG
* *
83260826 GTCATTTTACCCTAT-GAGGGAATTTCG
1 ATCATTTTACCCTATAG-GGGTATTTCG
83260853 ATCATT
1 ATCATT
83260859 ACATCAGCAC
Statistics
Matches: 138, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
26 24 0.17
27 112 0.81
28 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (27 bp):
ATCATTTTACCCTATAGGGGTATTTCG
Found at i:83260813 original size:53 final size:53
Alignment explanation
Indices: 83260694--83260843 Score: 176
Period size: 53 Copynumber: 2.8 Consensus size: 53
83260684 GTATTACGAA
* * * *
83260694 CATTTTACCCTACAGGGGTATTACAGA-CATTTTACCCTACCGAGGTATTTAGGT
1 CATTTTACCCTATAGGGGTATTTC-GATCATTTTACCCTA-TGAGCTATTTAGGT
* * * *
83260748 CATTTTAACCTATAAGGGTATTTCGATCATTTTACCCTATGTGCTATTTCGGT
1 CATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGAGCTATTTAGGT
* * *
83260801 CATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAG
1 CATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGAG
83260844 GGAATTTCGA
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
53 49 0.60
54 32 0.40
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (53 bp):
CATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGAGCTATTTAGGT
Found at i:83260908 original size:12 final size:12
Alignment explanation
Indices: 83260891--83260921 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
83260881 AATAGCCTAA
83260891 GCCCATGAGGTC
1 GCCCATGAGGTC
83260903 GCCCATGAGGTC
1 GCCCATGAGGTC
83260915 GCCCATG
1 GCCCATG
83260922 GTGGCCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.35, G:0.32, T:0.16
Consensus pattern (12 bp):
GCCCATGAGGTC
Found at i:83268410 original size:18 final size:18
Alignment explanation
Indices: 83268387--83268424 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
83268377 TTTTTTTTCT
*
83268387 CTTTGCTAAGTTCT-TCAA
1 CTTTGC-AAGCTCTGTCAA
83268405 CTTTGCAAGCTCTGTCAA
1 CTTTGCAAGCTCTGTCAA
83268423 CT
1 CT
83268425 AGAACAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.39
Consensus pattern (18 bp):
CTTTGCAAGCTCTGTCAA
Found at i:83275570 original size:13 final size:13
Alignment explanation
Indices: 83275552--83275577 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83275542 CTAAGCCATC
83275552 CCACACGGGCGTG
1 CCACACGGGCGTG
83275565 CCACACGGGCGTG
1 CCACACGGGCGTG
83275578 TCCCTGTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.38, T:0.08
Consensus pattern (13 bp):
CCACACGGGCGTG
Found at i:83276717 original size:14 final size:14
Alignment explanation
Indices: 83276698--83276725 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83276688 CCTATACACC
83276698 AACATTCATCAATA
1 AACATTCATCAATA
83276712 AACATTCATCAATA
1 AACATTCATCAATA
83276726 TGTTAGTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (14 bp):
AACATTCATCAATA
Found at i:83281844 original size:18 final size:17
Alignment explanation
Indices: 83281812--83281845 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
83281802 AACTGAATGG
83281812 ACTTTTAATTAAATTTT
1 ACTTTTAATTAAATTTT
*
83281829 ACTTTATAATTTAATTT
1 ACTTT-TAATTAAATTT
83281846 GGGTATTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (17 bp):
ACTTTTAATTAAATTTT
Found at i:83285039 original size:28 final size:28
Alignment explanation
Indices: 83284976--83285073 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
83284966 ATATTAAGTC
*
83284976 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
83285003 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
83285031 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
83285060 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83285074 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:83290029 original size:40 final size:40
Alignment explanation
Indices: 83289929--83290034 Score: 95
Period size: 40 Copynumber: 2.6 Consensus size: 40
83289919 GGGCTTCGGG
* * *
83289929 CCTAGTAGGCTATAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTA-AATGCCGGTG-ATGAATTCAGACTTAAAA
* *** * **
83289971 TCTAGCAGGCTTCGTGCCGGTGATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
*
83290011 CCTAGCAGGCTAAATGCCGATGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
83290035 TTGATAAAAG
Statistics
Matches: 49, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
40 32 0.65
41 8 0.16
42 9 0.18
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (40 bp):
CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
Found at i:83296279 original size:50 final size:49
Alignment explanation
Indices: 83296040--83296344 Score: 154
Period size: 46 Copynumber: 6.4 Consensus size: 49
83296030 TAGTGTATGA
* * ** * **
83296040 CATGTCTGGGACAT-GCATCGACCAC-ATTATGAGATCCAGGGTAAGAC
1 CATGTCTGGGACATGGCATCGGCCTCGAAGATGAGAGCCAGTATAAGAC
* * * * * * *
83296087 CATGTCTGGGACATGGCATCAGCATTG-AGACGAGTGCTAGTGTAAGA-
1 CATGTCTGGGACATGGCATCGGCCTCGAAGATGAGAGCCAGTATAAGAC
* * * * **
83296134 CATGTTTGGGACAT-GCATCAGCCTCG-GGACGTA-AGCCAAAATAAGA-
1 CATGTCTGGGACATGGCATCGGCCTCGAAGATG-AGAGCCAGTATAAGAC
* * * * * *
83296180 CATCTCTGGGACAT-GCTTTGG-CTACG-AGAT--GTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGCCT-CGAAGATGAGAGCCAGTATAAGAC
* * *
83296225 CATGTCTGGGACATGGCATCGGCACGGT-TATG-TGAGAGCTAGTATAAGAC
1 CATGTCTGGGACATGGCATCGGC-C--TCGAAGATGAGAGCCAGTATAAGAC
* * * * *
83296275 CATGTTTGGGACATGGCATTGGCCTCGAAGATGATAGCCAGTGTAAGAT
1 CATGTCTGGGACATGGCATCGGCCTCGAAGATGAGAGCCAGTATAAGAC
83296324 CATGTCTGGGACATGGCATCG
1 CATGTCTGGGACATGGCATCG
83296345 ACACTTTACC
Statistics
Matches: 190, Mismatches: 52, Indels: 30
0.70 0.19 0.11
Matches are distributed among these distances:
44 8 0.04
45 15 0.08
46 47 0.25
47 29 0.15
48 23 0.12
49 35 0.18
50 33 0.17
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (49 bp):
CATGTCTGGGACATGGCATCGGCCTCGAAGATGAGAGCCAGTATAAGAC
Found at i:83303148 original size:27 final size:27
Alignment explanation
Indices: 83303117--83303294 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
83303107 TAAATTGTAC
83303117 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
83303144 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83303170 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
83303198 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
83303226 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83303253 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
83303280 AGCACTGAGTATGCG
1 AGCACTAAGTGTGCG
83303295 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:83303231 original size:82 final size:81
Alignment explanation
Indices: 83303118--83303273 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83303108 AAATTGTACA
* *
83303118 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
83303182 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
83303199 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
83303264 TGCGAGTTGA
65 TGCGAATTGA
83303274 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:83305882 original size:20 final size:20
Alignment explanation
Indices: 83305857--83305897 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
83305847 CTTAAGGGGC
*
83305857 AGATTCAGCTTGCCTTTGCG
1 AGATTCAACTTGCCTTTGCG
83305877 AGATTCAACTTGCCTTTGCG
1 AGATTCAACTTGCCTTTGCG
83305897 A
1 A
83305898 CCAAATCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (20 bp):
AGATTCAACTTGCCTTTGCG
Found at i:83308496 original size:45 final size:45
Alignment explanation
Indices: 83308338--83308650 Score: 179
Period size: 46 Copynumber: 6.6 Consensus size: 45
83308328 GTATAATGCC
** *
83308338 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAGTCGAGACT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTA-C-ATCTCGAGGCT
* * * * * * *
83308387 GACGTCATGTCCTAGACATGTTCTTACACTAGCTCTCACATATTTG-TGCC
1 GATG-CATGTCCCAGACATG-TCTTACACT-G-ACT-ACAT-CTCGAGGCT
*
83308437 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-GTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTACATCTCG-AGGCT
* *
83308483 GATGCATGTCCCAGAAATGTCTTACACTGGCTTACATCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGAC-TACATCTCGAGGCT
* * * *
83308529 GATGCATGTCCCAGACATGTCTTACACT-AGCTCTCGTCTCAATG-T
1 GATGCATGTCCCAGACATGTCTTACACTGA-CT-ACATCTCGAGGCT
* * * * * * *
83308574 CAATTCCATGTCCCAGACATGTTCTTACACTGGCTCTCATAAT-GTGGCC
1 -GA-TGCATGTCCCAGACATG-TCTTACACTGACT-ACAT-CTCGAGGCT
83308623 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
83308651 AGCACACACA
Statistics
Matches: 207, Mismatches: 38, Indels: 41
0.72 0.13 0.14
Matches are distributed among these distances:
44 12 0.06
45 18 0.09
46 64 0.31
47 32 0.15
48 19 0.09
49 27 0.13
50 28 0.14
51 6 0.03
52 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTACATCTCGAGGCT
Found at i:83316993 original size:37 final size:37
Alignment explanation
Indices: 83316934--83317040 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
83316924 AGCTCAGACG
* *
83316934 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
83316971 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
83317008 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
83317041 AAATATATTT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:83317319 original size:48 final size:48
Alignment explanation
Indices: 83317167--83317320 Score: 238
Period size: 48 Copynumber: 3.2 Consensus size: 48
83317157 GGTCGTTCGG
*
83317167 CCACAATATACGTATCTCATACATATTTCACATT-GACCATTCAGCTTTA
1 CCAC-ATATACATATCTCATACATATTTCACATTAG-CCATTCAGCTTTA
** *
83317216 CCACATACGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTA
*
83317264 CCACATATACATATCTCATACATATTTCACATTAGCCATTCCGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTA
83317312 CCACATATA
1 CCACATATA
83317321 TGCATTTTCA
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
48 92 0.95
49 5 0.05
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTA
Found at i:83317383 original size:47 final size:47
Alignment explanation
Indices: 83317291--83317389 Score: 117
Period size: 47 Copynumber: 2.1 Consensus size: 47
83317281 ATACATATTT
* * ** *
83317291 CACATTAGCCATTCCGCTTTACCACATATATGCATTTTCATATTCAC
1 CACATTAGCCATTCCGCCTTACCACACATATGCATGCTCACATTCAC
* * * *
83317338 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTAGCCATTCCGCCTTACCACACATATGCATGCTCACATTCAC
83317385 CACAT
1 CACAT
83317390 AAAATCCTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CACATTAGCCATTCCGCCTTACCACACATATGCATGCTCACATTCAC
Found at i:83321350 original size:40 final size:40
Alignment explanation
Indices: 83321318--83321709 Score: 685
Period size: 40 Copynumber: 9.8 Consensus size: 40
83321308 CCAGCATGAT
* * * *
83321318 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83321358 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
83321398 TGCTCTTTGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83321438 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83321478 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83321518 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83321558 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83321598 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83321638 TGCTCTTCGGGACTTAGCTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83321678 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
83321710 CTCAATTCTC
Statistics
Matches: 337, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 337 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:83321695 original size:23 final size:23
Alignment explanation
Indices: 83321589--83321695 Score: 58
Period size: 23 Copynumber: 5.2 Consensus size: 23
83321579 GATACATCAC
83321589 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
83321612 TAGCCCGGAT--ACATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
83321629 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
83321652 TAGCTCGGAT--ACATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
83321669 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
83321692 TAGC
1 TAGC
83321696 CCGGATATAT
Statistics
Matches: 56, Mismatches: 16, Indels: 24
0.58 0.17 0.25
Matches are distributed among these distances:
17 16 0.29
18 4 0.07
19 6 0.11
21 6 0.11
22 4 0.07
23 20 0.36
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:83323029 original size:37 final size:37
Alignment explanation
Indices: 83322970--83323078 Score: 175
Period size: 37 Copynumber: 2.9 Consensus size: 37
83322960 AGCACAGACG
*
83322970 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACAC-ATAGTCATCGGGTCTTACCCGGACA
83323007 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
* *
83323044 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGA
83323079 ATATATTTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 1 0.01
37 67 0.99
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:83323355 original size:48 final size:48
Alignment explanation
Indices: 83323203--83323356 Score: 238
Period size: 48 Copynumber: 3.2 Consensus size: 48
83323193 GGTCGTTCGG
* *
83323203 CCACAATATACGTATCTCATACATATTTCACATT-GACCATTCAGCTTTA
1 CCAC-ATATACATATCTCATACATATTTCACATTAG-CCATTCGGCTTTA
**
83323252 CCACATACGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
83323300 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
83323348 CAACATATA
1 CCACATATA
83323357 TGCATGTTCA
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
48 92 0.95
49 5 0.05
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
Found at i:83323405 original size:47 final size:47
Alignment explanation
Indices: 83323327--83323425 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 47
83323317 ATACATATTT
* * * *
83323327 CACATTAGCCATTCGGCTTTACAACATATATGCATGTTCATATTCAC
1 CACATTAGCCATTCGGCCTTACAACACATATGCATGCTCACATTCAC
* *
83323374 CACATTGGCCATTCGGCCTTATC-ACACATATGCATGCTCACATTCAT
1 CACATTAGCCATTCGGCCTTA-CAACACATATGCATGCTCACATTCAC
83323421 CACAT
1 CACAT
83323426 AAAATCCTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 44 0.98
48 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.31
Consensus pattern (47 bp):
CACATTAGCCATTCGGCCTTACAACACATATGCATGCTCACATTCAC
Found at i:83326913 original size:8 final size:8
Alignment explanation
Indices: 83326880--83326934 Score: 58
Period size: 8 Copynumber: 6.9 Consensus size: 8
83326870 ATAAGATATT
83326880 TAATATATA
1 TAATATA-A
*
83326889 TAATATAT
1 TAATATAA
*
83326897 TATTATAA
1 TAATATAA
*
83326905 TAATTTAA
1 TAATATAA
83326913 TAATATAA
1 TAATATAA
*
83326921 TAAGAT-A
1 TAATATAA
83326928 TAATATA
1 TAATATA
83326935 TTAAGTAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
7 6 0.16
8 24 0.65
9 7 0.19
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (8 bp):
TAATATAA
Found at i:83337335 original size:21 final size:20
Alignment explanation
Indices: 83337303--83337341 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
83337293 GCCATTCAGC
*
83337303 CGTGTACAATAATACACGGG
1 CGTGTACAATAACACACGGG
*
83337323 CGTGCTACCATAACACACG
1 CGTG-TACAATAACACACG
83337342 AGTGTGGGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.18
Consensus pattern (20 bp):
CGTGTACAATAACACACGGG
Found at i:83339289 original size:6 final size:6
Alignment explanation
Indices: 83339264--83339324 Score: 72
Period size: 6 Copynumber: 10.2 Consensus size: 6
83339254 TGAATCCTCC
* *
83339264 TATTTT TTTTATT TAGTTT TATTTTT TATTTT TA-TTT TATTTT TA-TTT
1 TATTTT TATT-TT TATTTT TA-TTTT TATTTT TATTTT TATTTT TATTTT
83339312 TATTTT TATTTT T
1 TATTTT TATTTT T
83339325 TTTCATTTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
5 10 0.21
6 28 0.60
7 9 0.19
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (6 bp):
TATTTT
Found at i:83339290 original size:17 final size:17
Alignment explanation
Indices: 83339268--83339351 Score: 77
Period size: 17 Copynumber: 4.9 Consensus size: 17
83339258 TCCTCCTATT
83339268 TTTTTTA-TTTAGTTTTA
1 TTTTTTATTTTA-TTTTA
83339285 TTTTTTATTTTTATTTTA
1 TTTTTTA-TTTTATTTTA
83339303 -TTTTTATTTTATTTT-
1 TTTTTTATTTTATTTTA
* *
83339318 TATTTTT-TTTCATTTCAA
1 T-TTTTTATTTTATTT-TA
*
83339336 TTTATTATTTTATTTT
1 TTTTTTATTTTATTTT
83339352 GAAAGACAGA
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
16 16 0.29
17 22 0.40
18 13 0.24
19 4 0.07
ACGTcount: A:0.18, C:0.02, G:0.01, T:0.79
Consensus pattern (17 bp):
TTTTTTATTTTATTTTA
Found at i:83339295 original size:5 final size:5
Alignment explanation
Indices: 83339264--83339351 Score: 64
Period size: 5 Copynumber: 18.2 Consensus size: 5
83339254 TGAATCCTCC
*
83339264 TATTT T-TTT TA-TT TAGTTT TATTT T-TTA T-TTT TATTT TATTTT TATTT
1 TATTT TATTT TATTT TA-TTT TATTT TATTT TATTT TATTT TA-TTT TATTT
* *
83339312 TATTTT TATTT T-TTT TCATTT CAATT TA--T TATTT TATTT T
1 TA-TTT TATTT TATTT T-ATTT TATTT TATTT TATTT TATTT T
83339352 GAAAGACAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 20
0.73 0.05 0.22
Matches are distributed among these distances:
3 3 0.04
4 18 0.26
5 30 0.44
6 17 0.25
ACGTcount: A:0.18, C:0.02, G:0.01, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:83343748 original size:15 final size:16
Alignment explanation
Indices: 83343714--83343752 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
83343704 TAAGAACAGA
* *
83343714 GAAAGAAACTAAATAG
1 GAAAGAAACGAAAAAG
83343730 GAAAGAAA-GAAAAAG
1 GAAAGAAACGAAAAAG
83343745 GAAAGAAA
1 GAAAGAAA
83343753 AAGAAAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.69, C:0.03, G:0.23, T:0.05
Consensus pattern (16 bp):
GAAAGAAACGAAAAAG
Found at i:83344556 original size:6 final size:6
Alignment explanation
Indices: 83344545--83344578 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
83344535 TATGTGTCGA
* *
83344545 TTACTG TTACTG TTACTG TTACTG CTATTG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
83344579 CCTTACGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (6 bp):
TTACTG
Found at i:83345570 original size:22 final size:22
Alignment explanation
Indices: 83345539--83345593 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
83345529 GGGTTGATGG
* * *
83345539 CACGGGCGTGTCATATCAGACA
1 CACGGACGTGTCACATAAGACA
*
83345561 CACGGACGTGTCACATAAGCCA
1 CACGGACGTGTCACATAAGACA
83345583 CACGGACGTGT
1 CACGGACGTGT
83345594 GGTACCTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.16
Consensus pattern (22 bp):
CACGGACGTGTCACATAAGACA
Found at i:83345753 original size:15 final size:15
Alignment explanation
Indices: 83345733--83345763 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
83345723 CATGTAAATG
83345733 TGTTGCATTTATTCC
1 TGTTGCATTTATTCC
83345748 TGTTGCATTTATTCC
1 TGTTGCATTTATTCC
83345763 T
1 T
83345764 AGTTAGGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.13, T:0.55
Consensus pattern (15 bp):
TGTTGCATTTATTCC
Found at i:83346069 original size:26 final size:26
Alignment explanation
Indices: 83346034--83346108 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
83346024 GAAGACTTTC
*
83346034 CAGATGATATGCCACAAAGGTTTTTT
1 CAGATAATATGCCACAAAGGTTTTTT
* ***
83346060 CAGATAATATGGCACAAAACCTTTTT
1 CAGATAATATGCCACAAAGGTTTTTT
* *
83346086 -AGAGAATTTGCCACAAAGGTTTT
1 CAGATAATATGCCACAAAGGTTTT
83346109 CCAAAGGGCT
Statistics
Matches: 38, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
25 17 0.45
26 21 0.55
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (26 bp):
CAGATAATATGCCACAAAGGTTTTTT
Found at i:83346121 original size:25 final size:25
Alignment explanation
Indices: 83346093--83346211 Score: 100
Period size: 25 Copynumber: 4.8 Consensus size: 25
83346083 TTTAGAGAAT
* *
83346093 TTGCCACAAAGGTTTTCCAAAGGGC
1 TTGCCACAAAGGCTTTCCAAAGAGC
* * *
83346118 TTGCCACAAAGGCTTTCTAGAGAGT
1 TTGCCACAAAGGCTTTCCAAAGAGC
* **
83346143 TTTCCACAAAGGCTTTCCAAA-AAA
1 TTGCCACAAAGGCTTTCCAAAGAGC
* *
83346167 TTCACCACAAAGGCTTTCCAAAGA-A
1 TT-GCCACAAAGGCTTTCCAAAGAGC
83346192 TT-CACTACAAAGGCTTTCCA
1 TTGC-C-ACAAAGGCTTTCCA
83346212 GATAGTTCAC
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
23 1 0.01
24 4 0.05
25 73 0.92
26 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (25 bp):
TTGCCACAAAGGCTTTCCAAAGAGC
Found at i:83346161 original size:13 final size:13
Alignment explanation
Indices: 83346096--83346161 Score: 55
Period size: 13 Copynumber: 5.2 Consensus size: 13
83346086 AGAGAATTTG
*
83346096 CCACAAAGGTTTT
1 CCACAAAGGCTTT
* *
83346109 CCA-AAGGGCTTG
1 CCACAAAGGCTTT
83346121 CCACAAAGGCTTT
1 CCACAAAGGCTTT
* * * *
83346134 CTAGAGA-GTTTT
1 CCACAAAGGCTTT
83346146 CCACAAAGGCTTT
1 CCACAAAGGCTTT
83346159 CCA
1 CCA
83346162 AAAAATTCAC
Statistics
Matches: 38, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
12 17 0.45
13 21 0.55
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (13 bp):
CCACAAAGGCTTT
Found at i:83346220 original size:25 final size:25
Alignment explanation
Indices: 83346121--83346307 Score: 180
Period size: 25 Copynumber: 7.5 Consensus size: 25
83346111 AAAGGGCTTG
* * **
83346121 CCACAAAGGCTTTCTAGAGAGTTTT
1 CCACAAAGGCTTTCCAGAGAATTCA
* *
83346146 CCACAAAGGCTTTCCAAAAAATTCA
1 CCACAAAGGCTTTCCAGAGAATTCA
*
83346171 CCACAAAGGCTTTCCAAAGAATTCA
1 CCACAAAGGCTTTCCAGAGAATTCA
* * *
83346196 CTACAAAGGCTTTCCAGATAGTTCA
1 CCACAAAGGCTTTCCAGAGAATTCA
* * *
83346221 CTA-AAAGGCTTTCTAGAGAATTCT
1 CCACAAAGGCTTTCCAGAGAATTCA
* * *
83346245 CCACAAAAGCTTTCTAGAGAATTCG
1 CCACAAAGGCTTTCCAGAGAATTCA
* * *
83346270 CAATAAAGGCTTTCCAGAGAAATT-G
1 CCACAAAGGCTTTCCAGAG-AATTCA
83346295 CCACAAAGGCTTT
1 CCACAAAGGCTTT
83346308 TCAGGTAATT
Statistics
Matches: 136, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
24 19 0.14
25 113 0.83
26 4 0.03
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.26
Consensus pattern (25 bp):
CCACAAAGGCTTTCCAGAGAATTCA
Found at i:83346257 original size:74 final size:75
Alignment explanation
Indices: 83346123--83346307 Score: 194
Period size: 74 Copynumber: 2.5 Consensus size: 75
83346113 AGGGCTTGCC
* ** *
83346123 ACAAAGGCTTTCTAGAGAGTTTTCCACAAAGGCTTTCCAAAAAATTCACCACAAAGGCTTTCCAA
1 ACAAAGGCTTTCCAGAGAGTTCACCACAAAGGCTTTCCAAAAAATTCACCACAAAAGCTTTCCAA
*
83346188 AGAATTCACT
66 AGAATTCACA
* * * * * * * *
83346198 ACAAAGGCTTTCCAGATAGTTCACTA-AAAGGCTTTCTAGAGAATTCTCCACAAAAGCTTTCTAG
1 ACAAAGGCTTTCCAGAGAGTTCACCACAAAGGCTTTCCAAAAAATTCACCACAAAAGCTTTCCAA
*
83346262 AGAATTCGCA
66 AGAATTCACA
* * *
83346272 ATAAAGGCTTTCCAGAGAAATT-GCCACAAAGGCTTT
1 ACAAAGGCTTTCCAGAG-AGTTCACCACAAAGGCTTT
83346308 TCAGGTAATT
Statistics
Matches: 89, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
74 56 0.63
75 33 0.37
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (75 bp):
ACAAAGGCTTTCCAGAGAGTTCACCACAAAGGCTTTCCAAAAAATTCACCACAAAAGCTTTCCAA
AGAATTCACA
Found at i:83346257 original size:99 final size:99
Alignment explanation
Indices: 83346125--83346307 Score: 244
Period size: 99 Copynumber: 1.8 Consensus size: 99
83346115 GGCTTGCCAC
* * * *
83346125 AAAGGCTTTCTAGAGAGTTTTCCACAAAGGCTTTCCAAAAAATTCACCACAAAGGCTTTCCAAAG
1 AAAGGCTTTCTAGAGAATTCTCCACAAAAGCTTTCCAAAAAATTCACAACAAAGGCTTTCCAAAG
83346190 -AATT-CACTACAAAGGCTTTCCAGATAGTTCACTA
66 AAATTGC-C-ACAAAGGCTTTCCAGATAGTTCACTA
* * * * * *
83346224 AAAGGCTTTCTAGAGAATTCTCCACAAAAGCTTTCTAGAGAATTCGCAATAAAGGCTTTCCAGAG
1 AAAGGCTTTCTAGAGAATTCTCCACAAAAGCTTTCCAAAAAATTCACAACAAAGGCTTTCCAAAG
83346289 AAATTGCCACAAAGGCTTT
66 AAATTGCCACAAAGGCTTT
83346308 TCAGGTAATT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
99 66 0.92
100 5 0.07
101 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (99 bp):
AAAGGCTTTCTAGAGAATTCTCCACAAAAGCTTTCCAAAAAATTCACAACAAAGGCTTTCCAAAG
AAATTGCCACAAAGGCTTTCCAGATAGTTCACTA
Found at i:83358654 original size:42 final size:42
Alignment explanation
Indices: 83358576--83358655 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
83358566 GTGCAGGTTT
*
83358576 CACACAGCCAAGACACACGCCCGTGTTCTAGGCCGTGTACAA
1 CACACAGCCAAGACACACGCCCGTGTTCTAGCCCGTGTACAA
** * *
83358618 CACACAGCTGAGATACACGCCTGTGTCTCT-GCCCGTGT
1 CACACAGCCAAGACACACGCCCGTGT-TCTAGCCCGTGT
83358656 GCTCAATTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 29 0.91
43 3 0.09
ACGTcount: A:0.24, C:0.35, G:0.23, T:0.19
Consensus pattern (42 bp):
CACACAGCCAAGACACACGCCCGTGTTCTAGCCCGTGTACAA
Found at i:83372779 original size:73 final size:73
Alignment explanation
Indices: 83372690--83372868 Score: 286
Period size: 73 Copynumber: 2.5 Consensus size: 73
83372680 GAGTCACATG
*
83372690 GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGAGCATACTGACTTGCAATATTAAGGTGCAAGG
1 GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGAGCATACTAACTTGCAATATTAAGGTGCAAGG
83372755 GTTATACT
66 GTTATACT
* * *
83372763 GCCAAGTCACACGCCCGTGTCCTAGGCCGTGTAAGCATACTAACTTGCAATATTAAGTTGCAAGG
1 GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGAGCATACTAACTTGCAATATTAAGGTGCAAGG
*
83372828 GTTATATT
66 GTTATACT
** *
83372836 GCCAAGTCACATACCTGTGTGCTAGGCCGTGTG
1 GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTG
83372869 TCATACACGG
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 96 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (73 bp):
GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGAGCATACTAACTTGCAATATTAAGGTGCAAGG
GTTATACT
Found at i:83373682 original size:14 final size:15
Alignment explanation
Indices: 83373663--83373693 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
83373653 AATTAATCAG
83373663 TTCATAACA-ATTCA
1 TTCATAACATATTCA
83373677 TTCATAACATATTCA
1 TTCATAACATATTCA
83373692 TT
1 TT
83373694 TCTTATCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (15 bp):
TTCATAACATATTCA
Found at i:83373982 original size:41 final size:39
Alignment explanation
Indices: 83373860--83373994 Score: 125
Period size: 41 Copynumber: 3.4 Consensus size: 39
83373850 CCAGTTTGGT
*
83373860 ACCCAGTACCTCATCGAA-TAATTCGAAGTAATAAGTTGAC
1 ACCCAGTGCCTCATCGAATTAA-TCGAAGTAATAA-TTGAC
* * * * * *
83373900 ACCCAGTGTCTCATC-AGCTAAATCAAAGT-A-AATGGGC
1 ACCCAGTGCCTCATCGA-ATTAATCGAAGTAATAATTGAC
83373937 ACCCAGTGCCTCATCGAATTAATCCGAAGTAATAGATTGAC
1 ACCCAGTGCCTCATCGAATTAAT-CGAAGTAATA-ATTGAC
*
83373978 ACCCAGTGTCTCATCGA
1 ACCCAGTGCCTCATCGA
83373995 CTCGAGGTCA
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
37 21 0.28
38 8 0.11
39 3 0.04
40 20 0.27
41 22 0.30
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (39 bp):
ACCCAGTGCCTCATCGAATTAATCGAAGTAATAATTGAC
Found at i:83374836 original size:11 final size:12
Alignment explanation
Indices: 83374807--83374842 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
83374797 AAACCCTAAT
*
83374807 TCTTCTTCTTTC
1 TCTTTTTCTTTC
83374819 TCTTTTTCTTTC
1 TCTTTTTCTTTC
83374831 -CTTTTTCTTTC
1 TCTTTTTCTTTC
83374842 T
1 T
83374843 TTCTTCTCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
TCTTTTTCTTTC
Found at i:83374919 original size:5 final size:5
Alignment explanation
Indices: 83374909--83374957 Score: 98
Period size: 5 Copynumber: 9.8 Consensus size: 5
83374899 ATTTAGTTAT
83374909 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
83374958 TACTTAACAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:83375557 original size:10 final size:8
Alignment explanation
Indices: 83375499--83375566 Score: 59
Period size: 8 Copynumber: 8.4 Consensus size: 8
83375489 TATAATGTAC
83375499 ATATATT-
1 ATATATTA
83375506 ATATACTTA
1 ATATA-TTA
*
83375515 GTAT-TTA
1 ATATATTA
* *
83375522 AGAAATTA
1 ATATATTA
83375530 ATATATTA
1 ATATATTA
83375538 ATATATTA
1 ATATATTA
83375546 ATATAATATA
1 ATAT-AT-TA
*
83375556 ATATAATA
1 ATATATTA
83375564 ATA
1 ATA
83375567 AAATAAAGCA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
7 9 0.18
8 28 0.57
9 6 0.12
10 6 0.12
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.44
Consensus pattern (8 bp):
ATATATTA
Found at i:83376549 original size:44 final size:44
Alignment explanation
Indices: 83376468--83376559 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
83376458 TGTACAGGGA
*
83376468 TACTTCGACCTTGAGTCGATGAGGCACTAATAATGTCGTA-TCGT
1 TACTTCAACCTTGAGTCGATGAGGCACTAATAATGTCGTACT-GT
* * * *
83376512 TACTTCAACTTTGTGTCGATGAGGCACT-TTATGTGTCGTACTGT
1 TACTTCAACCTTGAGTCGATGAGGCACTAATA-ATGTCGTACTGT
83376556 TACT
1 TACT
83376560 GATATTTCGG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.05
44 38 0.93
45 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (44 bp):
TACTTCAACCTTGAGTCGATGAGGCACTAATAATGTCGTACTGT
Found at i:83391401 original size:26 final size:26
Alignment explanation
Indices: 83391365--83391418 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
83391355 ACAATGACTT
83391365 AGCCAAATACATGCCAAAATAATATC
1 AGCCAAATACATGCCAAAATAATATC
83391391 AGCCAAATACATGCCAAAATAATATC
1 AGCCAAATACATGCCAAAATAATATC
83391417 AG
1 AG
83391419 ACAATATGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.22, G:0.09, T:0.19
Consensus pattern (26 bp):
AGCCAAATACATGCCAAAATAATATC
Found at i:83395029 original size:48 final size:48
Alignment explanation
Indices: 83394911--83395678 Score: 622
Period size: 48 Copynumber: 15.9 Consensus size: 48
83394901 GGTAAGATGC
* * * * * ** *
83394911 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATTGGTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGAAGT
* * *
83394961 CAATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAAGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * * * *
83395009 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-AAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
* * * * *
83395057 CG-TGCCATGTTCCAGACATGGTATTACACTGGCTCTCATATATC-AGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGA-AGT
* * *
83395106 TGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAAGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * * * *
83395154 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-AAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
* * * * **
83395202 CG-TGCCATGTTCCAGACATGGTATTACACTGGCTCTCATATATCGGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGAAGT
* * *
83395251 TGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAAGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * * * *
83395299 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-AAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
* * * **
83395347 CG-TGCCATGTTCCAAACATGGTATTACACTAGCTCTTATATATCGGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGAAGT
* * * *
83395396 TGATGCCATGTTCCAAACATGGTCTTACAGTAGCCCACATGTCG-AGG
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * * *
83395443 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-AAATGT
1 C-GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
* * * *
83395492 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATTTC-AGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGA-AGT
* * * * * *
83395542 CGATGCCATGTTCCGAATATAGTCTTACACTAGCCCACATGTCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * *
83395590 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT-AAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
*
83395638 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATA
83395679 ACCCTAGTAT
Statistics
Matches: 567, Mismatches: 125, Indels: 54
0.76 0.17 0.07
Matches are distributed among these distances:
47 92 0.16
48 290 0.51
49 33 0.06
50 152 0.27
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
Found at i:83395177 original size:145 final size:145
Alignment explanation
Indices: 83394914--83395678 Score: 1251
Period size: 145 Copynumber: 5.3 Consensus size: 145
83394904 AAGATGCCGA
* * * * ***
83394914 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATTGGTGCCAATGCCATGTTCCAAAC
1 TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATCGGTGTTGATGCCATGTTCCAAAC
83394979 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
83395044 CTCATATAAATGTCG
131 CTCATATAAATGTCG
* *
83395059 TGCCATGTTCCAGACATGGTATTACACTGGCTCTCATATATCAGTGTTGATGCCATGTTCCAAAC
1 TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATCGGTGTTGATGCCATGTTCCAAAC
83395124 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
83395189 CTCATATAAATGTCG
131 CTCATATAAATGTCG
*
83395204 TGCCATGTTCCAGACATGGTATTACACTGGCTCTCATATATCGGTGTTGATGCCATGTTCCAAAC
1 TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATCGGTGTTGATGCCATGTTCCAAAC
83395269 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
83395334 CTCATATAAATGTCG
131 CTCATATAAATGTCG
* *
83395349 TGCCATGTTCCAAACATGGTATTACACTAGCTCTTATATATCGGTGTTGATGCCATGTTCCAAAC
1 TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATCGGTGTTGATGCCATGTTCCAAAC
* * **
83395414 ATGGTCTTACAGTAGCCCACATGTCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
83395479 CTCATATAAATGTCG
131 CTCATATAAATGTCG
* * * * *
83395494 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATTTCAGTGTCGATGCCATGTTCCGAA
1 -TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATCGGTGTTGATGCCATGTTCCAAA
* * * * *
83395559 TATAGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGC
65 CATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGC
83395624 TCTCATATAAATGTCG
130 TCTCATATAAATGTCG
* * *
83395640 ATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATA
1 -TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATA
83395679 ACCCTAGTAT
Statistics
Matches: 590, Mismatches: 29, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
145 420 0.71
146 170 0.29
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (145 bp):
TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATCGGTGTTGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
CTCATATAAATGTCG
Found at i:83396322 original size:12 final size:12
Alignment explanation
Indices: 83396305--83396329 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83396295 AAAACCCTAA
83396305 ACTCGCAACCAT
1 ACTCGCAACCAT
83396317 ACTCGCAACCAT
1 ACTCGCAACCAT
83396329 A
1 A
83396330 TTGCAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.40, G:0.08, T:0.16
Consensus pattern (12 bp):
ACTCGCAACCAT
Found at i:83404271 original size:50 final size:50
Alignment explanation
Indices: 83404196--83404590 Score: 364
Period size: 50 Copynumber: 7.9 Consensus size: 50
83404186 TCCGTTGTGA
* * *
83404196 GTCACTTGTGTAGTACTAAGTGCAGGCTACTGTGTGTACCAAATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* * * * * *
83404246 GTCACATATGTAGTATTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--TAG
* * * ** * * *
83404297 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* ** *
83404347 GTCACATGTATAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* * * * *
83404397 GTCGCATGTGTAGTTCTAAGTGCAGGCTACTATGCT-TACCCG-TTAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATG-TGTACCAGATTGA--TAG
* * * * * * *
83404448 ATCACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* *
83404498 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
*** * *
83404548 GTTGTATGTGTAGTACTAAGTCCAGGCTACTATGCGTACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
83404591 GAGCTTCTAT
Statistics
Matches: 271, Mismatches: 66, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
49 6 0.02
50 193 0.71
51 70 0.26
52 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
Found at i:83404377 original size:101 final size:101
Alignment explanation
Indices: 83404197--83404378 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 101
83404187 CCGTTGTGAG
* ** * * * *
83404197 TCACTTGTGTAGTACTAAGTGCAGGCTACTGTGTGTACCAAATTGATAGGTCACATATGTAGTAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGATAAGTCACATATATAGTAC
83404262 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
** * * *
83404298 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAAGTCACATGTATAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGATAAGTCACATATATAGTAC
83404363 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
83404379 CATGTACCAG
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 69 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGATAAGTCACATATATAGTAC
TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
Found at i:83404462 original size:101 final size:101
Alignment explanation
Indices: 83404348--83404537 Score: 272
Period size: 101 Copynumber: 1.9 Consensus size: 101
83404338 GATGGTTAAG
* * * *
83404348 TCACATGTATAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAAGTCGCATGTGTAGTTC
1 TCACATGTATAGTACTAAGTGCAAGCTACTACATGTACCAGATGGATAAGTCACATGTGTAGTAC
*
83404413 TAAGTGCAGGCTACTATGCTTACCCGTTAACTTTGA
66 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGA
* * ** * *
83404449 TCACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGATGGTTAAGTCACATGTGTAGTAC
1 TCACATGTATAGTACTAAGTGCAAGCTACTACATGTACCAGATGGATAAGTCACATGTGTAGTAC
*
83404514 TAAGTGTAGGCTACTATGCGTACC
66 TAAGTGCAGGCTACTATGCGTACC
83404538 AGATTGATAG
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (101 bp):
TCACATGTATAGTACTAAGTGCAAGCTACTACATGTACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGA
Found at i:83404469 original size:151 final size:151
Alignment explanation
Indices: 83404195--83404587 Score: 590
Period size: 151 Copynumber: 2.6 Consensus size: 151
83404185 ATCCGTTGTG
* * * * *
83404195 AGTCACTTGTGTAGTACTAAGTGCAGGCTACTGTGTGTACCAAATTGATAGGTCACATATGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
83404260 AT-TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGC
66 -TCTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
*
83404324 TACTACGTGTATTAGATGGTTA
130 TACTACGTGTATCAGATGGTTA
* ** *
83404346 AGTCACATGTATAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAAGTCGCATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
* *
83404411 TCTAAGTGCAGGCTACTATGCTTACCCGTTAACTTTGATCACGTGTGTAGTACTAAGTGCAAGCT
66 TCTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
*
83404476 ACTATGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* * * *
83404497 AGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATTGATAGGTTGTATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
* *
83404562 ACTAAGTCCAGGCTACTATGCGTACC
66 TCTAAGTGCAGGCTACTATGCGTACC
83404588 AGAGAGCTTC
Statistics
Matches: 216, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
150 1 0.00
151 215 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (151 bp):
AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
TCTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
ACTACGTGTATCAGATGGTTA
Found at i:83404811 original size:16 final size:16
Alignment explanation
Indices: 83404790--83404821 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
83404780 AGAATGGAGT
83404790 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
83404806 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
83404822 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:83407012 original size:48 final size:49
Alignment explanation
Indices: 83406902--83407368 Score: 450
Period size: 48 Copynumber: 9.6 Consensus size: 49
83406892 AGGGTAAGAT
* * * * * *
83406902 GCCGATGCCATATCCCAGACATGGTCTTACATTGGCTCTCATATATC-AG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCT-ACATATCAAG
*
83406951 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAGC-CTACATGTCAAG
1 -GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTACATATCAAG
* * *
83407000 GCCGATGCCATG-TCCTAGACATGGTCTTACACTAGCTCT-CATATAAAT
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTACATATCAAG
* * *
83407048 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATC-GG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCT-ACATATCAAG
* * * * *
83407097 TGTCGATGCCATGTACCAAACATGGTCTTACACTAGC-CCACATGTCGAG
1 -GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTACATATCAAG
* * *
83407146 TCCGATGCCATG-TCCTAAACATGGTCTTACACTAGCTCT-CATATAAAT
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTACATATCAAG
** * * * * *
83407194 GTTGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATATCGAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCT-ACATATCAAG
* * * * *
83407244 ACTGATGCCATGTTCCAAACATGGTCTTACACTAGC-CCACATGTCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTACATATCAAG
* * * * * *
83407292 GCCAATGCCATGTCCCAGACATGGTCTTGCACTAGCTCT-CATATAAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTACATATCAAG
83407340 GCCGATGCCATGTTCCAAACATGGTCTTA
1 GCCGATGCCATGTTCCAAACATGGTCTTA
83407369 TGCCGATGCC
Statistics
Matches: 340, Mismatches: 63, Indels: 30
0.79 0.15 0.07
Matches are distributed among these distances:
47 5 0.01
48 212 0.62
49 17 0.05
50 106 0.31
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTACATATCAAG
Found at i:83407104 original size:98 final size:95
Alignment explanation
Indices: 83406902--83407368 Score: 494
Period size: 98 Copynumber: 4.8 Consensus size: 95
83406892 AGGGTAAGAT
* * * *
83406902 GCCGATGCCATATCCCAGACATGGTCTTACATTGGCTCTCATATATCAGTGCCGATGCCATGTTC
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATATA--AATGCCGATGCCATGTTC
*
83406967 CAAACATGGTCTTACACTAGCCT-ACATGTCAAG
63 CAAACATGGTCTTACACTAGCCTCACATATC-AG
83407000 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
* * *
83407065 AACATGGTCTTACACTGGCTCTCATATATCGG
65 AACATGGTCTTACACTAGC-CTCACATATCAG
* * * * * **
83407097 TGTCGATGCCATGTACCAAACATGGTCTTACACTAGCCCACATGTCGA-GTCCGATGCCATG-TC
1 -GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATATAAATG-CCGATGCCATGTTC
* * *
83407160 CTAAACATGGTCTTACACTAG-CTCTCATATAAAT
63 C-AAACATGGTCTTACACTAGCCTCACATAT-CAG
** * * * * * *
83407194 GTTGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATATCGATACTGATGCCATGTTC
1 GCCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCTCATATA--AATGCCGATGCCATGTTC
*
83407259 CAAACATGGTCTTACACTAGCC-CACATGTCGAG
63 CAAACATGGTCTTACACTAGCCTCACATATC-AG
* *
83407292 GCCAATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
83407357 AACATGGTCTTA
65 AACATGGTCTTA
83407369 TGCCGATGCC
Statistics
Matches: 309, Mismatches: 44, Indels: 34
0.80 0.11 0.09
Matches are distributed among these distances:
96 109 0.35
97 11 0.04
98 183 0.59
99 6 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (95 bp):
GCCGATGCCATGTCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAA
ACATGGTCTTACACTAGCCTCACATATCAG
Found at i:83407168 original size:146 final size:146
Alignment explanation
Indices: 83406900--83407368 Score: 751
Period size: 146 Copynumber: 3.2 Consensus size: 146
83406890 AAAGGGTAAG
* * * * * *
83406900 ATGCCGATGCCATATCCCAGACATGGTCTTACATTGGCTCTCATATATCAGTGCCGATGCCATGT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGACGATGCCATGT
* *
83406965 TCCAAACATGGTCTTACACTAGCCTACATGTCAAGGCCGATGCCATGTCCTAGACATGGTCTTAC
66 TCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCTAGACATGGTCTTAC
83407030 ACTAGCTCTCATATAA
131 ACTAGCTCTCATATAA
*
83407046 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTCGATGCCATGT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGACGATGCCATGT
* * *
83407111 ACCAAACATGGTCTTACACTAGCCCACATGTCGAGTCCGATGCCATGTCCTAAACATGGTCTTAC
66 TCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCTAGACATGGTCTTAC
83407176 ACTAGCTCTCATATAA
131 ACTAGCTCTCATATAA
** * *
83407192 ATGTTGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATATCGAT-ACTGATGCCATG
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGAC-GATGCCATG
* * *
83407256 TTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCAATGCCATGTCCCAGACATGGTCTTG
65 TTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCTAGACATGGTCTTA
83407321 CACTAGCTCTCATATAA
130 CACTAGCTCTCATATAA
83407338 ATGCCGATGCCATGTTCCAAACATGGTCTTA
1 ATGCCGATGCCATGTTCCAAACATGGTCTTA
83407369 TGCCGATGCC
Statistics
Matches: 297, Mismatches: 25, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
145 1 0.00
146 296 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (146 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGACGATGCCATGT
TCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCTAGACATGGTCTTAC
ACTAGCTCTCATATAA
Found at i:83407374 original size:30 final size:30
Alignment explanation
Indices: 83407338--83407398 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
83407328 TCTCATATAA
83407338 ATGCCGATGCCATGTTCCAAACATGGTCTT
1 ATGCCGATGCCATGTTCCAAACATGGTCTT
83407368 ATGCCGATGCCATGTTCCAAACATGGTCTT
1 ATGCCGATGCCATGTTCCAAACATGGTCTT
83407398 A
1 A
83407399 CACTGGCTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (30 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTT
Found at i:83412006 original size:18 final size:18
Alignment explanation
Indices: 83411983--83412037 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
83411973 ACCATGTTAA
83411983 AAATGTTAGATTAATTTG
1 AAATGTTAGATTAATTTG
**
83412001 AAATGTTA-AGTT-GCTTG
1 AAATGTTAGA-TTAATTTG
83412018 AAATGTTAGATTAATTTG
1 AAATGTTAGATTAATTTG
83412036 AA
1 AA
83412038 CTCATCACCA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
17 14 0.47
18 16 0.53
ACGTcount: A:0.38, C:0.02, G:0.18, T:0.42
Consensus pattern (18 bp):
AAATGTTAGATTAATTTG
Found at i:83413510 original size:48 final size:48
Alignment explanation
Indices: 83413448--83413631 Score: 296
Period size: 48 Copynumber: 3.8 Consensus size: 48
83413438 TATATATGTG
83413448 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
83413496 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
83413544 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGACATGTAAA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * * *
83413592 TATGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATGAGA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
83413632 CAAGTGTGAA
Statistics
Matches: 128, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 128 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:83413638 original size:22 final size:22
Alignment explanation
Indices: 83413612--83413655 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
83413602 CCGAATGGCT
*
83413612 AGTGTGAAATGTGAATGAGACA
1 AGTGTGAAATATGAATGAGACA
83413634 AGTGTGAAATATGAATGAGACA
1 AGTGTGAAATATGAATGAGACA
83413656 TGTATATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.30, T:0.23
Consensus pattern (22 bp):
AGTGTGAAATATGAATGAGACA
Found at i:83413646 original size:70 final size:70
Alignment explanation
Indices: 83413564--83413701 Score: 240
Period size: 70 Copynumber: 2.0 Consensus size: 70
83413554 CCGAATGGCT
* *
83413564 AGTGTGAAATATGTATGAGACATGTAAATATGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATG
1 AGTGTGAAATATGAATGAGACATGTAAATATGGTAAAGCCGAATGGCTAGTGTGAAATATGAATG
83413629 AGACA
66 AGACA
* *
83413634 AGTGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATG
1 AGTGTGAAATATGAATGAGACATGTAAATATGGTAAAGCCGAATGGCTAGTGTGAAATATGAATG
83413699 AGA
66 AGA
83413702 TATGTATATG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.38, C:0.07, G:0.29, T:0.26
Consensus pattern (70 bp):
AGTGTGAAATATGAATGAGACATGTAAATATGGTAAAGCCGAATGGCTAGTGTGAAATATGAATG
AGACA
Found at i:83413659 original size:118 final size:118
Alignment explanation
Indices: 83413518--83413739 Score: 374
Period size: 118 Copynumber: 1.9 Consensus size: 118
83413508 GAATGGCTAA
* *
83413518 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 TGTGAAATATATATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
83413583 ACATGTAAATATGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
66 ACATGTAAATATGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
83413636 TGTGAAATATGA-ATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGA
1 TGTGAAATAT-ATATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGA
* * * *
83413700 GATATGTATATGTGGTAAAGCCGAATGGTTAGTGTGAAAT
65 GACATGTAAATATGGTAAAGCCGAATGGCTAGTGTGAAAT
83413740 ATGTACGAGA
Statistics
Matches: 97, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
118 96 0.99
119 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.29
Consensus pattern (118 bp):
TGTGAAATATATATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
ACATGTAAATATGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
Found at i:83413744 original size:166 final size:166
Alignment explanation
Indices: 83413470--83413787 Score: 548
Period size: 166 Copynumber: 1.9 Consensus size: 166
83413460 GAATGGCTAA
* *
83413470 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 TGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
83413535 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGACATGTAAATATGGTAA
66 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGACATGTAAATATGGTAA
83413600 AGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
131 AGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
*
83413636 TGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGA
1 TGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT-ATATGA
* * * *
83413700 GATATGTATATGTGGTAAAGCCGAATGGTTAGTGTGAAATATGTACGAGATATGTATATGTGGTA
65 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGACATGTAAATATGGTA
83413765 AAGCCGAATGGCTAGTGTGAAAT
130 AAGCCGAATGGCTAGTGTGAAAT
83413788 ATGTAGGAGA
Statistics
Matches: 143, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
166 142 0.99
167 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (166 bp):
TGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGACATGTAAATATGGTAA
AGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
Found at i:83413798 original size:48 final size:48
Alignment explanation
Indices: 83413634--83413790 Score: 278
Period size: 48 Copynumber: 3.3 Consensus size: 48
83413624 GAATGAGACA
*
83413634 AGTGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCT
1 AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCT
*
83413682 AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGTT
1 AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCT
* *
83413730 AGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCT
1 AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCT
83413778 AGTGTGAAATATG
1 AGTGTGAAATATG
83413791 TAGGAGATGT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 104 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29
Consensus pattern (48 bp):
AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:83413993 original size:37 final size:37
Alignment explanation
Indices: 83413943--83414041 Score: 162
Period size: 37 Copynumber: 2.7 Consensus size: 37
83413933 ATATATTCCG
83413943 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
* * *
83413980 GGTAAGACCCGATGACTATGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
*
83414017 GGTAAGACCCGATAACTACGTGTGG
1 GGTAAGACCCGATGACTACGTGTGG
83414042 GGACTATTCG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
Found at i:83419172 original size:50 final size:50
Alignment explanation
Indices: 83419055--83419449 Score: 461
Period size: 50 Copynumber: 7.8 Consensus size: 50
83419045 ATTGTGAGAA
* * * *
83419055 CACATGTGTAGTACTACGTGTAGGCTACTATGTGTTTAAGACA-ATT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
*
83419107 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
83419157 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * ** *
83419208 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTATTAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
83419258 CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAAATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
83419308 CGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *
83419358 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
83419408 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
83419450 AGGTTCGGTT
Statistics
Matches: 295, Mismatches: 45, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
48 2 0.01
49 4 0.01
50 219 0.74
51 40 0.14
52 30 0.10
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:83419482 original size:150 final size:150
Alignment explanation
Indices: 83419102--83419446 Score: 375
Period size: 151 Copynumber: 2.3 Consensus size: 150
83419092 AAGACAATTT
* * * * * * * *
83419102 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTA
1 TAGGTCACATGTGTAGTACTAAGTGCAGACTACTACGCGTACCAAATGGATAGGTCACAAGGGTA
** * * * * * * **
83419167 GTACTAAGTGCAGGCTACTATGCGTACCTGATAGTTTCGATCACGTGTGTAGTACTAAGTGAAGG
66 GTACTAAGCACAGGCTACTACGTGTATCAGATGGATAAG-TCACGTGTGTAGTACTAAGTGAAGG
** *
83419232 CTACTACGTGTATTAGATGGT
130 CTACTACGTGTACCAGATGGA
* * * * * *
83419253 TAGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAAATTGATAGGTCGCATGTGTA
1 TAGGTCACATGTGTAGTACTAAGTGCAGACTACTACGCGTACCAAATGGATAGGTCACAAGGGTA
** *
83419318 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGTGCAGGC
66 GTACTAAGCACAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGTGAAGGC
*
83419383 TACTACGTGTACCAGATTGA
131 TACTACGTGTACCAGATGGA
* * *
83419403 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TAGGTCACATGTGTAGTACTAAGTGCAGACTACTACGCGTACCA
83419447 GATAGGTTCG
Statistics
Matches: 172, Mismatches: 22, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
150 80 0.47
151 92 0.53
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (150 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGACTACTACGCGTACCAAATGGATAGGTCACAAGGGTA
GTACTAAGCACAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGTGAAGGC
TACTACGTGTACCAGATGGA
Found at i:83420388 original size:179 final size:178
Alignment explanation
Indices: 83420053--83420389 Score: 450
Period size: 179 Copynumber: 1.9 Consensus size: 178
83420043 ACTATCAGAT
* * * * *
83420053 AGTGAAATAGGGGTATCTTTAATGAATAAATTTTACTAATTTGCTAAATAAAAAATTCTAAAAAT
1 AGTGAAATAGGGGTAACTTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTCTAAAAAT
* *
83420118 TTTATGATAAGAATATATGTGAGTTCAGTTTCTGGGAAAATTATCAGTTCTTAATTTGGAGTCCC
66 TTTATGATAAGAATATATGTGAGTTCAGTTTCTAGGAAAATTATCAGATCTTAATTTGGAGTCCC
* *
83420183 GTACAATGAGATAAATAACTTTTAGTAAAGAGAGGTCGGAACTGTTGGAC
131 ATAC-ATCAGATAAATAAC-TTTAGTAAAGAGAGGTCGGAACTGTTGGAC
* *
83420233 AGTGAAATAGGGGTAACTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAA-
1 AGTGAAATAGGGGTAACTTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTCTAAAAAT
* *
83420297 TTTATGGTAAGAATATATGTGAG-TCTAGTTTCTAGGAAAATTAAT-AGATCTTAATTTGGAGTT
66 TTTATGATAAGAATATATGTGAGTTC-AGTTTCTAGGAAAATT-ATCAGATCTTAATTTGGAGTC
83420360 CCATAGC-TCCAGCTATAAATAA-TTTAGTAA
129 CCATA-CAT-CAG--ATAAATAACTTTAGTAA
83420390 CTGTGACTCA
Statistics
Matches: 138, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
178 3 0.02
179 67 0.49
180 60 0.43
181 8 0.06
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (178 bp):
AGTGAAATAGGGGTAACTTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTCTAAAAAT
TTTATGATAAGAATATATGTGAGTTCAGTTTCTAGGAAAATTATCAGATCTTAATTTGGAGTCCC
ATACATCAGATAAATAACTTTAGTAAAGAGAGGTCGGAACTGTTGGAC
Found at i:83428943 original size:27 final size:27
Alignment explanation
Indices: 83428905--83428961 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
83428895 AACACGTCAA
*
83428905 GAAAGGAATGCCTATGTGGCGCAAT-AT
1 GAAAGGAATGCCTATGTAGCG-AATCAT
*
83428932 GAAAGGAATGCCTTTGTAGCGAATCAT
1 GAAAGGAATGCCTATGTAGCGAATCAT
83428959 GAA
1 GAA
83428962 GGGATAGCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (27 bp):
GAAAGGAATGCCTATGTAGCGAATCAT
Found at i:83435230 original size:43 final size:42
Alignment explanation
Indices: 83435107--83435236 Score: 138
Period size: 43 Copynumber: 3.1 Consensus size: 42
83435097 CTATTCTAGA
* *
83435107 AAGGAAAGAAATCAACTGAAATAAAATTGCAAT-TGAAACCT
1 AAGGAAAGAAATGAACTGAAATAAAATTGCAATCAGAAACCT
* * ** *
83435148 AA-AAAATGAATTGAACTGAAATAAAATCCCAACTGAGAAACCT
1 AAGGAAA-GAAATGAACTGAAATAAAATTGCAA-TCAGAAACCT
* *
83435191 AAGGAAAGAAATGAACTGAAATAAGATTGCAATCAAGAAAACT
1 AAGGAAAGAAATGAACTGAAATAAAATTGCAATC-AGAAACCT
83435234 AAG
1 AAG
83435237 TCTTAAGTAG
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
40 3 0.04
41 23 0.32
42 2 0.03
43 40 0.56
44 3 0.04
ACGTcount: A:0.55, C:0.12, G:0.15, T:0.18
Consensus pattern (42 bp):
AAGGAAAGAAATGAACTGAAATAAAATTGCAATCAGAAACCT
Found at i:83444055 original size:27 final size:29
Alignment explanation
Indices: 83443991--83444055 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 29
83443981 TATGGATCCA
* *
83443991 CATGTATGAGTCTATCATATATGAGTTTG
1 CATGTATGAATCTATCATATATGAATTTG
**
83444020 CATCCATGAATCT-TC-TATATGAATTTG
1 CATGTATGAATCTATCATATATGAATTTG
*
83444047 TATGTATGA
1 CATGTATGA
83444056 TAGTCCACTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
27 17 0.59
28 2 0.07
29 10 0.34
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (29 bp):
CATGTATGAATCTATCATATATGAATTTG
Found at i:83447157 original size:28 final size:28
Alignment explanation
Indices: 83447123--83447249 Score: 155
Period size: 28 Copynumber: 4.5 Consensus size: 28
83447113 ATAGTAAGTC
83447123 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
* *
83447151 CACACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTG-TTATATAATCAAACT
*
83447180 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
* * ** * *
83447208 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGTTATATAA-TCAAACT
83447237 CGCACACTTAGTG
1 CGCACACTTAGTG
83447250 CCAATCTCAT
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 43 0.50
29 43 0.50
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGTTATATAATCAAACT
Found at i:83447179 original size:29 final size:29
Alignment explanation
Indices: 83447123--83447250 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
83447113 ATAGTAAGTC
83447123 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* *
83447151 CACACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
83447180 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* ** * *
83447208 TGCACACTTAGTGC-TATGCAATTTAAACC
1 CGCACACTTAGTGCTTATATAA-TCAAACT
83447237 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83447251 CAATCTCATG
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 43 0.49
29 45 0.51
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:83447214 original size:57 final size:57
Alignment explanation
Indices: 83447122--83447250 Score: 179
Period size: 57 Copynumber: 2.3 Consensus size: 57
83447112 TATAGTAAGT
*
83447122 CCGCACACTTAGTGTTATATAATCAAACTCACACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCACACACTTAGTGCTATACA-AATCAAAC
* ** * * *
83447179 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCACACACTTAGTGCTATACAAATCAAAC
83447236 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
83447251 CAATCTCATG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCACACACTTAGTGCTATACAAATCAAAC
Found at i:83450348 original size:48 final size:48
Alignment explanation
Indices: 83450277--83450626 Score: 648
Period size: 48 Copynumber: 7.3 Consensus size: 48
83450267 TGTACAAGAT
*
83450277 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
83450325 AAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
83450373 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
83450421 AAATATGTATGAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
83450468 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
83450516 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
83450564 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
83450612 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
83450627 GTGTGTATAT
Statistics
Matches: 294, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 47 0.16
48 247 0.84
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:83450614 original size:191 final size:191
Alignment explanation
Indices: 83450277--83450626 Score: 655
Period size: 191 Copynumber: 1.8 Consensus size: 191
83450267 TGTACAAGAT
83450277 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAG
83450342 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
*
83450407 GAATGGCTAATGTGAAATATGTATGAGATAGTATATGTGGTAAAGCCGAATGGCTAATGTG
131 GAATGGCTAATGTGAAATATGTAGGAGATAGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
83450468 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAG
*
83450533 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
*
83450598 GAATGGCTAGTGTGAAATATGTAGGAGAT
131 GAATGGCTAATGTGAAATATGTAGGAGAT
83450627 GTGTGTATAT
Statistics
Matches: 154, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
191 154 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (191 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAG
GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
GAATGGCTAATGTGAAATATGTAGGAGATAGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:83450821 original size:37 final size:37
Alignment explanation
Indices: 83450767--83450865 Score: 171
Period size: 37 Copynumber: 2.7 Consensus size: 37
83450757 GGAAATATAT
83450767 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
83450804 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
83450841 TCCGGGTAAGACCCGATAACTACGT
1 TCCGGGTAAGACCCGATGACTACGT
83450866 ATGGGGACTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:83452199 original size:40 final size:40
Alignment explanation
Indices: 83452151--83452698 Score: 874
Period size: 40 Copynumber: 13.8 Consensus size: 40
83452141 AGTTATATAG
83452151 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
83452191 CTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
83452231 CTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
83452271 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
83452311 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
83452351 CCGGGCTAAGTCCC-----G-ATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
83452385 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
83452425 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
83452465 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* *
83452505 CCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
83452545 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * * * *
83452585 CCGGGCTAAGTCTCGGAGAGCATTCGTGTTAGAGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
** * * *
83452625 TAGGGTTAAGTCCCGTAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * * *
83452665 CCAGGCTAGGTCCCAAAGAGCAATCATGCTGGTG
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
83452699 ATGTGTATTC
Statistics
Matches: 473, Mismatches: 29, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
34 33 0.07
35 1 0.00
39 1 0.00
40 438 0.93
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
Found at i:83452912 original size:25 final size:25
Alignment explanation
Indices: 83452862--83452912 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
83452852 TGTGTAACAA
* *
83452862 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
83452887 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
83452912 C
1 C
83452913 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:83456599 original size:48 final size:48
Alignment explanation
Indices: 83456528--83456968 Score: 741
Period size: 48 Copynumber: 9.3 Consensus size: 48
83456518 TGTACAAGAT
83456528 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
83456576 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
83456624 AAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
83456672 AAATATGTATGAGATATGTATATGTGGT--A----AATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
83456714 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
83456762 ATATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
83456810 AAATATATATGAGATATGTATATGTGGTAAAGACGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
83456858 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
83456906 AACTATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
83456954 AAATATGTAGGAGAT
1 AAATATATATGAGAT
83456969 GTGTGTATAT
Statistics
Matches: 372, Mismatches: 15, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
42 40 0.11
44 1 0.00
46 1 0.00
48 330 0.89
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:83456849 original size:186 final size:188
Alignment explanation
Indices: 83456528--83456968 Score: 742
Period size: 186 Copynumber: 2.3 Consensus size: 188
83456518 TGTACAAGAT
*
83456528 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
*
83456593 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGAC
*
83456658 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT-A-AATGGCTAATGTG
131 GAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAACAATGGCTAATGTG
*
83456714 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGATATATGTATGAGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
*
83456779 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGAC
66 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGAC
*
83456844 GAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
131 GAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT-AA--C-AATGGCTAATGTG
* * * *
83456906 AACTATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
83456969 GTGTGTATAT
Statistics
Matches: 238, Mismatches: 11, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
186 167 0.70
188 1 0.00
192 70 0.29
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (188 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGAC
GAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAACAATGGCTAATGTG
Found at i:83457164 original size:37 final size:37
Alignment explanation
Indices: 83457109--83457207 Score: 144
Period size: 37 Copynumber: 2.7 Consensus size: 37
83457099 GGAAATATAT
83457109 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
83457146 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
** * *
83457183 TCCGTTTAAGACCCGGTAACTACGT
1 TCCGGGTAAGACCCGATGACTACGT
83457208 ATGGGGACTA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:83461731 original size:9 final size:9
Alignment explanation
Indices: 83461717--83461746 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
83461707 CTAACATAAG
83461717 AATAATTGA
1 AATAATTGA
83461726 AATAATTGA
1 AATAATTGA
*
83461735 AATAATAGA
1 AATAATTGA
83461744 AAT
1 AAT
83461747 TTATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (9 bp):
AATAATTGA
Found at i:83464869 original size:21 final size:20
Alignment explanation
Indices: 83464843--83464885 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
83464833 CAAAGTATGC
*
83464843 ACTACAAATTAATAATAGCAA
1 ACTACAAATTAACAATAG-AA
83464864 ACTACAAATTAACAATAGAA
1 ACTACAAATTAACAATAGAA
83464884 AC
1 AC
83464886 AAGAAACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.58, C:0.16, G:0.05, T:0.21
Consensus pattern (20 bp):
ACTACAAATTAACAATAGAA
Found at i:83465549 original size:2 final size:2
Alignment explanation
Indices: 83465542--83465570 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
83465532 CAAACAAAAG
83465542 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
83465571 CTCTCAATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:83474779 original size:17 final size:17
Alignment explanation
Indices: 83474744--83474781 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
83474734 TATTGACGGC
*
83474744 AAGGAAGGTTCGGTAGT
1 AAGGAAGGTTCGGCAGT
*
83474761 AAGGAAGGTTCGGCGGT
1 AAGGAAGGTTCGGCAGT
83474778 AAGG
1 AAGG
83474782 TGTGGTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.29, C:0.08, G:0.45, T:0.18
Consensus pattern (17 bp):
AAGGAAGGTTCGGCAGT
Found at i:83486791 original size:30 final size:28
Alignment explanation
Indices: 83486728--83486790 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
83486718 ACGCACGGGC
*
83486728 GTGTGTGACACACGGCCATGTGGTTAGG
1 GTGTGTGACACACGGCCATGCGGTTAGG
83486756 GTGTGTGACACACGGCCATGCGGTTAGG
1 GTGTGTGACACACGGCCATGCGGTTAGG
*
83486784 CTGTGTG
1 GTGTGTG
83486791 TACCATGCAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.16, C:0.19, G:0.40, T:0.25
Consensus pattern (28 bp):
GTGTGTGACACACGGCCATGCGGTTAGG
Found at i:83498052 original size:8 final size:8
Alignment explanation
Indices: 83498039--83498068 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
83498029 AGATCGGCAC
83498039 AAGCCGAA
1 AAGCCGAA
83498047 AAGCCGAA
1 AAGCCGAA
*
83498055 ATGCCGAA
1 AAGCCGAA
83498063 AAGCCG
1 AAGCCG
83498069 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:83498541 original size:54 final size:54
Alignment explanation
Indices: 83498455--83498616 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
83498445 TAGAGGAAGC
* *
83498455 GTCCTGGTGGCTATGCCATAATTATCTAATCTGGTGGCTTTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
*
83498509 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
* * * * *
83498563 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTTTGCCACATATATCT
83498616 G
1 G
83498617 GCAGCCTCGC
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 13 0.13
54 85 0.87
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
Found at i:83498609 original size:27 final size:27
Alignment explanation
Indices: 83498458--83498616 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
83498448 AGGAAGCGTC
* * *
83498458 CTGGTGGCTATGCCATAATTATCT-AAT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
83498485 CTGGTGGCTTTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
83498512 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
83498539 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
83498566 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
83498593 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
83498617 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 103 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:83498610 original size:81 final size:80
Alignment explanation
Indices: 83498458--83498616 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 80
83498448 AGGAAGCGTC
* * *
83498458 CTGGTGGCTATGCCATAATTATCTAATCTGGTGGCTTTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
83498523 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* ** *
83498539 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTAATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
83498602 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
83498617 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:83499740 original size:24 final size:24
Alignment explanation
Indices: 83499674--83499788 Score: 101
Period size: 23 Copynumber: 4.9 Consensus size: 24
83499664 TCAACTTGTA
* *
83499674 AGAGCTTACTATTTT-AGCTCATT
1 AGAGCTTACTGTTTTCAGCTCGTT
* *** *
83499697 GGAGCTTAC-CAATTCAGCTCGGT
1 AGAGCTTACTGTTTTCAGCTCGTT
*
83499720 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACTGTTTTCAGCTCGTT
* *
83499744 GGAGCTTACCGTTTT-AGCTCGTT
1 AGAGCTTACTGTTTTCAGCTCGTT
*
83499767 AGAGCTTACTGTTCATCAGCTC
1 AGAGCTTACTGTT-TTCAGCTC
83499789 AAGACGAGCT
Statistics
Matches: 70, Mismatches: 18, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
22 2 0.03
23 40 0.57
24 23 0.33
25 5 0.07
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (24 bp):
AGAGCTTACTGTTTTCAGCTCGTT
Found at i:83499752 original size:47 final size:47
Alignment explanation
Indices: 83499642--83499789 Score: 176
Period size: 47 Copynumber: 3.1 Consensus size: 47
83499632 AGACTCACCA
* * *
83499642 CAGCTCATATGG-GCTTACCGATTCAACT-TGTAAGAGCTTACTATTTT
1 CAGCTCAT-TGGAGCTTACCGATTCAGCTCGGT-AGAGCTTACTGTTTT
*
83499689 -AGCTCATTGGAGCTTACCAATTCAGCTCGGTAGAGCTTACTGTTTT
1 CAGCTCATTGGAGCTTACCGATTCAGCTCGGTAGAGCTTACTGTTTT
* * * *
83499735 CAGCTCATTGGAGCTTACCGTTTTAGCTCGTTAGAGCTTACTGTTCAT
1 CAGCTCATTGGAGCTTACCGATTCAGCTCGGTAGAGCTTACTGTT-TT
83499783 CAGCTCA
1 CAGCTCA
83499790 AGACGAGCTT
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
45 3 0.03
46 35 0.40
47 42 0.48
48 8 0.09
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (47 bp):
CAGCTCATTGGAGCTTACCGATTCAGCTCGGTAGAGCTTACTGTTTT
Found at i:83500540 original size:396 final size:396
Alignment explanation
Indices: 83499808--83500581 Score: 1361
Period size: 396 Copynumber: 2.0 Consensus size: 396
83499798 TTACCGATCA
*
83499808 TGGCTCAAAAGAGCATATATGATGATGAATTGACAGATTAATGATGGTATTCACTCTTGTATCCT
1 TGGCTCAAAAGAGCATATATGATGATGAATTGACAGATTAATGATGATATTCACTCTTGTATCCT
*
83499873 TTGAAGTTCTAATAAGTTCAACGGGACAATATGCTGCTTATACGGATAAGTTACAGATTATAAAT
66 TTGAAGTTCTAATAAGTTCAACGGGACAATATGCTGCTTATACAGATAAGTTACAGATTATAAAT
*
83499938 GTTACTAGTGTTATATATATATGATATATGGATTTTGGAATGATGTAAAGTATTGTATCAATGGA
131 GTTACTAGTGTTATATATATATGATATATGAATTTTGGAATGATGTAAAGTATTGTATCAATGGA
*
83500003 TGATTTTATGTATTTGGCAAATGACTAACATGTGTTGGATACTTGTGATTAGGTGTTGGATAATT
196 TGATTTTATGTATTTGGCAAATGACTAACATGTGATGGATACTTGTGATTAGGTGTTGGATAATT
83500068 AAATTGTTGGCACATTTAATGTTACCTTGATTATGTTTGAATGGTAAGTTTAATTCTGAATTATA
261 AAATTGTTGGCACATTTAATGTTACCTTGATTATGTTTGAATGGTAAGTTTAATTCTGAATTATA
* *
83500133 CGGGCTTACTAAGCTTTAAAGCTTACTCATTTTCTTTTTCTATGTTTTATAGAGGTTCGTTAGCT
326 CGGGCTTACTAAACTTTAAAGCTTACTCAGTTTCTTTTTCTATGTTTTATAGAGGTTCGTTAGCT
83500198 CGCTCG
391 CGCTCG
* * *
83500204 TGGCTCAAAAGAGCATATATGATGATGAATTGACTGATTATTGATGATGTTCACT-TGTGTATCC
1 TGGCTCAAAAGAGCATATATGATGATGAATTGACAGATTAATGATGATATTCACTCT-TGTATCC
* *
83500268 TTTGAAGTTCTAATAAGTTCAACGGGACTATATGCTGTTTATACAGATAAGTTACAGATTATAAA
65 TTTGAAGTTCTAATAAGTTCAACGGGACAATATGCTGCTTATACAGATAAGTTACAGATTATAAA
*
83500333 TGTTACTAGTGTTATATATATATGATATGTGAATTTTGGAATGATGTAAAGTATTGTATCAATGG
130 TGTTACTAGTGTTATATATATATGATATATGAATTTTGGAATGATGTAAAGTATTGTATCAATGG
* *
83500398 ATGATTTTGTGTATTTGTCAAATGACTAACATGTGATGGATACTTGTGATTAGGTGTTGGATAAT
195 ATGATTTTATGTATTTGGCAAATGACTAACATGTGATGGATACTTGTGATTAGGTGTTGGATAAT
* * *
83500463 TAAATTGTTGGCATATTTAATTTTTCCTTGATTATGTTTGAATGGTAAGTTTAATTCTGAATTAT
260 TAAATTGTTGGCACATTTAATGTTACCTTGATTATGTTTGAATGGTAAGTTTAATTCTGAATTAT
* *
83500528 ACGGGCTTACTAAATTTTAAAGCTTACTCAGTTTCTTTTTCTATGTTTTCTAGA
325 ACGGGCTTACTAAACTTTAAAGCTTACTCAGTTTCTTTTTCTATGTTTTATAGA
83500582 TGTAACACCC
Statistics
Matches: 358, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
395 1 0.00
396 357 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (396 bp):
TGGCTCAAAAGAGCATATATGATGATGAATTGACAGATTAATGATGATATTCACTCTTGTATCCT
TTGAAGTTCTAATAAGTTCAACGGGACAATATGCTGCTTATACAGATAAGTTACAGATTATAAAT
GTTACTAGTGTTATATATATATGATATATGAATTTTGGAATGATGTAAAGTATTGTATCAATGGA
TGATTTTATGTATTTGGCAAATGACTAACATGTGATGGATACTTGTGATTAGGTGTTGGATAATT
AAATTGTTGGCACATTTAATGTTACCTTGATTATGTTTGAATGGTAAGTTTAATTCTGAATTATA
CGGGCTTACTAAACTTTAAAGCTTACTCAGTTTCTTTTTCTATGTTTTATAGAGGTTCGTTAGCT
CGCTCG
Found at i:83501584 original size:14 final size:14
Alignment explanation
Indices: 83501565--83501594 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
83501555 GATCCTATAA
83501565 AATGAGGAAAAAGG
1 AATGAGGAAAAAGG
83501579 AATGAGGAAAAAGG
1 AATGAGGAAAAAGG
83501593 AA
1 AA
83501595 GGGGTATGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.33, T:0.07
Consensus pattern (14 bp):
AATGAGGAAAAAGG
Found at i:83502738 original size:48 final size:48
Alignment explanation
Indices: 83502621--83502950 Score: 293
Period size: 48 Copynumber: 6.8 Consensus size: 48
83502611 GTAAAATGTT
*** * ** * *
83502621 GATGCCATGTCCTGGACAGGGTCTTACACTGGCTCTTATACATCAGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA-A-AAATGCC
* * * ** * *
83502671 GATGCCATGTCCCAGACATGGTCTTATACTGACAAATATAAAAATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
* *** *
83502719 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
* *
83502767 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
* * * *** *
83502815 GATTCCATGTTCCAAACATGGTCTTACACTGGCT-AGCGTATTGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCA-CATAAAAATGCC
* * * * * *
83502863 GATGCAATGTCCCAGACATGGTCTTACACTGGCTTACATAATACTGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
* *
83502911 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA
83502951 TCGCCGTGGT
Statistics
Matches: 226, Mismatches: 52, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
47 1 0.00
48 191 0.85
49 2 0.01
50 32 0.14
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
Found at i:83502823 original size:96 final size:96
Alignment explanation
Indices: 83502640--83502951 Score: 419
Period size: 96 Copynumber: 3.2 Consensus size: 96
83502630 TCCTGGACAG
** * * * * *
83502640 GGTCTTACACTGGCTCTTATACATCAGTGCCGATGCCATGTCCCAGACATGGTCTTATACTGACA
1 GGTCTTACACTGGCTCACATA-TTGAG-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
* *
83502705 AATATAAAAATGTCGATGCCATGTTCCAAACAT
64 AACATAAAAATGCCGATGCCATGTTCCAAACAT
*
83502738 GGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
1 GGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAA
* *
83502803 CATAACAATGCCGATTCCATGTTCCAAACAT
66 CATAAAAATGCCGATGCCATGTTCCAAACAT
* * *
83502834 GGTCTTACACTGGCT-AGCGTATTGAGGCCGATGCAATGTCCCAGACATGGTCTTACACTGGCTT
1 GGTCTTACACTGGCTCA-CATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA
* * *
83502898 ACATAATACTGCTGATGCCATGTTCCAAACAT
65 ACATAAAAATGCCGATGCCATGTTCCAAACAT
*
83502930 GGTCTTACACTGGCTCTCATAT
1 GGTCTTACACTGGCTCACATAT
83502952 CGCCGTGGTC
Statistics
Matches: 191, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 168 0.88
97 3 0.02
98 19 0.10
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (96 bp):
GGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAA
CATAAAAATGCCGATGCCATGTTCCAAACAT
Found at i:83513509 original size:15 final size:15
Alignment explanation
Indices: 83513489--83513519 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
83513479 CTTATTATAA
83513489 ATTAAAGTTTAATTT
1 ATTAAAGTTTAATTT
83513504 ATTAAAGTTTAATTT
1 ATTAAAGTTTAATTT
83513519 A
1 A
83513520 CATATAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (15 bp):
ATTAAAGTTTAATTT
Found at i:83514133 original size:14 final size:15
Alignment explanation
Indices: 83514109--83514138 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
83514099 AAATATCAAA
83514109 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
83514124 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
83514138 A
1 A
83514139 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:83519358 original size:40 final size:40
Alignment explanation
Indices: 83519281--83519538 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
83519271 AAACCAAGTA
* * * *
83519281 CCTTCGAGATTTAG-CCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
83519320 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
83519360 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
83519400 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
83519440 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
83519480 CCTTCGGGGCTTAGGCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
83519520 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
83519539 TTATCATCCG
Statistics
Matches: 200, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 14 0.07
40 186 0.93
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:83521818 original size:27 final size:27
Alignment explanation
Indices: 83521734--83521910 Score: 133
Period size: 27 Copynumber: 6.5 Consensus size: 27
83521724 AAATTGTACA
* * *
83521734 GCACTAAGTGTGCG-ATTCTACTTTGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
83521761 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
83521788 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* ** *
83521815 GCACTGAGTGTGCGGGTTTGACTATGTA
1 GCACTAAGTGTGC-GAATTGACTATGTG
* * *
83521843 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * * *
83521870 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
83521897 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
83521911 GGCTCAATAT
Statistics
Matches: 120, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
27 96 0.80
28 24 0.20
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:83521873 original size:55 final size:54
Alignment explanation
Indices: 83521761--83521910 Score: 140
Period size: 55 Copynumber: 2.8 Consensus size: 54
83521751 CTACTTTGTT
* ** * *
83521761 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * * ** *
83521815 GCACTGAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
83521870 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
83521911 GGCTCAATAT
Statistics
Matches: 77, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
54 36 0.47
55 41 0.53
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:83521874 original size:82 final size:82
Alignment explanation
Indices: 83521730--83521912 Score: 192
Period size: 82 Copynumber: 2.2 Consensus size: 82
83521720 GATTAAATTG
* * * * *
83521730 TACAGCACTAAGTGTGC-GATTCT-ACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACT
1 TACAGCACTGAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACT
*
83521793 AAGTGTGCGAATTGACCA
65 AAATGTGCGAATTGACCA
* * ** *
83521811 TGCGGCACTGAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTGAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
83521875 AAATGTGCGAGTTGATTA
65 AAATGTGCGAATTGACCA
*
83521893 TATAGCACTGAGTGTGCGGG
1 TACAGCACTGAGTGTGCGGG
83521913 CTCAATATAC
Statistics
Matches: 82, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
81 16 0.20
82 66 0.80
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (82 bp):
TACAGCACTGAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTA
AATGTGCGAATTGACCA
Found at i:83547405 original size:33 final size:33
Alignment explanation
Indices: 83547325--83547405 Score: 126
Period size: 33 Copynumber: 2.5 Consensus size: 33
83547315 TGCATTTTGC
*
83547325 ACTGTACTGATACTAAATAGGGCTTTAGCCCAG
1 ACTGTACTGATACTGAATAGGGCTTTAGCCCAG
* *
83547358 AATGTACTGATACTGAATAGGGCTTTGGCCCAG
1 ACTGTACTGATACTGAATAGGGCTTTAGCCCAG
*
83547391 ACTGTATTGATACTG
1 ACTGTACTGATACTG
83547406 TGTGATTCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (33 bp):
ACTGTACTGATACTGAATAGGGCTTTAGCCCAG
Found at i:83565618 original size:27 final size:27
Alignment explanation
Indices: 83565588--83565737 Score: 104
Period size: 27 Copynumber: 5.5 Consensus size: 27
83565578 ATATTGAGCC
*
83565588 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTACATAATCAACT
* * * * *
83565615 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTCAGTGCTACATAATCAACT
* * *
83565642 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTCAGTGCTACATAATC-AACT
** ** *
83565670 CGCACACTCAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTACATAATCAACT
* * **
83565697 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTA-CATAATCAACT
*
83565724 CGCACACTTAGTGC
1 CGCACACTCAGTGC
83565738 AACAAAGTAG
Statistics
Matches: 98, Mismatches: 23, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
27 77 0.79
28 21 0.21
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCTACATAATCAACT
Found at i:83573581 original size:27 final size:27
Alignment explanation
Indices: 83573551--83573700 Score: 104
Period size: 27 Copynumber: 5.5 Consensus size: 27
83573541 ATATTGAGCC
*
83573551 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTACATAATCAACT
* * * * *
83573578 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTCAGTGCTACATAATCAACT
* * *
83573605 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTCAGTGCTACATAATC-AACT
** ** *
83573633 CGCACACTCAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTACATAATCAACT
* * **
83573660 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTA-CATAATCAACT
*
83573687 CGCACACTTAGTGC
1 CGCACACTCAGTGC
83573701 AACAAAGTAG
Statistics
Matches: 98, Mismatches: 23, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
27 77 0.79
28 21 0.21
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCTACATAATCAACT
Done.