Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104050246
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4660000 characters in sequence are not A, C, G, or T
File 256 of 316
Found at i:84662848 original size:79 final size:80
Alignment explanation
Indices: 84662731--84662902 Score: 242
Period size: 79 Copynumber: 2.2 Consensus size: 80
84662721 GCTCCTCGTT
*
84662731 CAAATGCCTTCGGGACATACCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACATACCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
84662795 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
* * * **
84662811 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACATACCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
84662874 GATTTAGTATCTCGCA
65 GATTTAGTAACTCGCA
84662890 CAAATGCCTTCGG
1 CAAATGCCTTCGG
84662903 ATCTTAGTCA
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
78 4 0.05
79 65 0.78
80 14 0.17
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATACCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATTTAGTAACTCGCA
Found at i:84662911 original size:40 final size:40
Alignment explanation
Indices: 84662731--84662909 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
84662721 GCTCCTCGTT
* *
84662731 CAAATGCCTTCGGGA-CATACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
84662771 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
* * *
84662811 CAAATGCCTTCGG-GCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
84662850 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
84662890 CAAATGCCTTCGGATCTTAG
1 CAAATGCCTTCGGATCTTAG
84662910 TCAGATATGG
Statistics
Matches: 128, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 37 0.29
40 89 0.70
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:84662931 original size:40 final size:40
Alignment explanation
Indices: 84662757--84662941 Score: 148
Period size: 40 Copynumber: 4.7 Consensus size: 40
84662747 ATACCCCGGT
* * ** *
84662757 TATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 TATAGTATCTAGCACAAATGCCTTC-GGATCTTAGTCCAGA
* * * * * *
84662797 TTTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA
1 TATAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCAGA
* *
84662836 -ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 TA-TAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCAGA
* *
84662876 TTTAGTATCTCGCACAAATGCCTTCGGATCTTAGT-CAGA
1 TATAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCAGA
*
84662915 TATGGTCA-CTTAGCACAAA-GCCTTCGG
1 TATAGT-ATC-TAGCACAAATGCCTTCGG
84662942 GACTTAGCCC
Statistics
Matches: 128, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
39 52 0.41
40 76 0.59
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (40 bp):
TATAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCAGA
Found at i:84662938 original size:79 final size:79
Alignment explanation
Indices: 84662759--84662954 Score: 222
Period size: 79 Copynumber: 2.5 Consensus size: 79
84662749 ACCCCGGTTA
* * *
84662759 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTATCTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
*
84662824 GCTTAGCCCGGAAT
66 GCTTAGCCCAGAAT
* * *
84662838 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCACAAATGCCTTCG
1 TAGTATCTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCG
* *
84662902 GATCTTAG-TCAG-AT
65 G-GCTTAGCCCAGAAT
*
84662916 ATGGTCA-CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -TAGT-ATC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
84662955 CATCATTCAA
Statistics
Matches: 101, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
78 5 0.05
79 79 0.78
80 17 0.17
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (79 bp):
TAGTATCTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
GCTTAGCCCAGAAT
Found at i:84681011 original size:40 final size:40
Alignment explanation
Indices: 84680956--84681146 Score: 305
Period size: 40 Copynumber: 4.8 Consensus size: 40
84680946 CGGATGATAA
84680956 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
84680996 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
84681036 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
84681075 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
84681115 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
84681147 AGCTATATCC
Statistics
Matches: 140, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
39 38 0.27
40 102 0.73
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:84681088 original size:79 final size:80
Alignment explanation
Indices: 84680952--84681146 Score: 313
Period size: 79 Copynumber: 2.5 Consensus size: 80
84680942 TATTCGGATG
* *
84680952 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCA
*
84681017 TTTGTGCGAGTTACT
66 TTGGTGCGAGTTACT
*
84681032 A-ATTCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGC
84681095 ATTGGTGCGAGTTACT
65 ATTGGTGCGAGTTACT
* *
84681111 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
84681147 AGCTATATCC
Statistics
Matches: 105, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
79 73 0.70
80 32 0.30
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCGAAGGCA
TTGGTGCGAGTTACT
Found at i:84686121 original size:22 final size:21
Alignment explanation
Indices: 84686074--84686121 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
84686064 ATTAAATAAA
84686074 TTAAAAAATAATAAAAGATTT
1 TTAAAAAATAATAAAAGATTT
* * * *
84686095 ATAAATAAATAGTAATAGTTTT
1 TTAAA-AAATAATAAAAGATTT
84686117 TTAAA
1 TTAAA
84686122 CATAATTAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (21 bp):
TTAAAAAATAATAAAAGATTT
Found at i:84692898 original size:17 final size:16
Alignment explanation
Indices: 84692876--84692919 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
84692866 TAGTAGAAGG
84692876 GTTCGCCAAACCTTAGA
1 GTTCGCCAAACC-TAGA
*
84692893 GTTCGCCGAATCCTAGA
1 GTTCGCC-AAACCTAGA
84692910 GTTCGCCAAA
1 GTTCGCCAAA
84692920 TGGCGAATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 2 0.08
17 18 0.75
18 4 0.17
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (16 bp):
GTTCGCCAAACCTAGA
Found at i:84694368 original size:43 final size:43
Alignment explanation
Indices: 84694307--84694562 Score: 295
Period size: 43 Copynumber: 6.0 Consensus size: 43
84694297 AGGATTTTCA
* *
84694307 ATATGTGATTACGTGTAAGACCCTTTCTGGGACAG-TGGCATCG
1 ATATGTGATTACATGTAAGACCCTGTCTGGGAC-GTTGGCATCG
** * *
84694350 ATATGTGATTACATGTAAGACCAAGTTTGGGATGTTGGCATCG
1 ATATGTGATTACATGTAAGACCCTGTCTGGGACGTTGGCATCG
** * * *
84694393 ATATGTGATTATGTATAAGACTAC-GTCTGGGACGTTGGCATCA
1 ATATGTGATTACATGTAAGAC-CCTGTCTGGGACGTTGGCATCG
*
84694436 ATATGTGATTACATGTAAGACCCTGTCTGAGACAG-TGGCATCG
1 ATATGTGATTACATGTAAGACCCTGTCTGGGAC-GTTGGCATCG
** * *
84694479 ATATGTGATTACATGTAAGACTATGTCTAGGACGTTAGCATCG
1 ATATGTGATTACATGTAAGACCCTGTCTGGGACGTTGGCATCG
*
84694522 ATATGTGATTACATGTAAGACTAC-GTCTGGGACGTTGGCAT
1 ATATGTGATTACATGTAAGAC-CCTGTCTGGGACGTTGGCAT
84694563 TGTACGATAT
Statistics
Matches: 178, Mismatches: 29, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
42 3 0.02
43 174 0.98
44 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCCTGTCTGGGACGTTGGCATCG
Found at i:84694541 original size:129 final size:129
Alignment explanation
Indices: 84694304--84694562 Score: 410
Period size: 129 Copynumber: 2.0 Consensus size: 129
84694294 CATAGGATTT
* * *
84694304 TCAATATGTGATTACGTGTAAGACCCTTTCTGGGACAGTGGCATCGATATGTGATTACATGTAAG
1 TCAATATGTGATTACATGTAAGACCCTGTCTGAGACAGTGGCATCGATATGTGATTACATGTAAG
* * * * **
84694369 ACCAAGTTTGGGATGTTGGCATCGATATGTGATTATGTATAAGACTACGTCTGGGACGTTGGCA
66 ACCAAGTCTAGGACGTTAGCATCGATATGTGATTACATATAAGACTACGTCTGGGACGTTGGCA
84694433 TCAATATGTGATTACATGTAAGACCCTGTCTGAGACAGTGGCATCGATATGTGATTACATGTAAG
1 TCAATATGTGATTACATGTAAGACCCTGTCTGAGACAGTGGCATCGATATGTGATTACATGTAAG
* * *
84694498 ACTATGTCTAGGACGTTAGCATCGATATGTGATTACATGTAAGACTACGTCTGGGACGTTGGCA
66 ACCAAGTCTAGGACGTTAGCATCGATATGTGATTACATATAAGACTACGTCTGGGACGTTGGCA
84694562 T
1 T
84694563 TGTACGATAT
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
129 118 1.00
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (129 bp):
TCAATATGTGATTACATGTAAGACCCTGTCTGAGACAGTGGCATCGATATGTGATTACATGTAAG
ACCAAGTCTAGGACGTTAGCATCGATATGTGATTACATATAAGACTACGTCTGGGACGTTGGCA
Found at i:84696593 original size:22 final size:20
Alignment explanation
Indices: 84696566--84696605 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
84696556 AATCCTTTTT
84696566 ATAATACCAAAATTATATAAAA
1 ATAATA-CAAAATT-TATAAAA
84696588 ATAATACAAAATTTATAA
1 ATAATACAAAATTTATAA
84696606 TATATATACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 7 0.39
22 6 0.33
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.30
Consensus pattern (20 bp):
ATAATACAAAATTTATAAAA
Found at i:84696771 original size:41 final size:41
Alignment explanation
Indices: 84696726--84696806 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
84696716 AACATTTATT
84696726 TTTACAAATAAGTATATTATAACATTTGTATAACATATAAA
1 TTTACAAATAAGTATATTATAACATTTGTATAACATATAAA
* *
84696767 TTTACAAATAATTATATTATAACATTTTTATAACATATAA
1 TTTACAAATAAGTATATTATAACATTTGTATAACATATAA
84696807 GTTATTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.42
Consensus pattern (41 bp):
TTTACAAATAAGTATATTATAACATTTGTATAACATATAAA
Found at i:84696952 original size:31 final size:31
Alignment explanation
Indices: 84696890--84696952 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 31
84696880 TGTTTATGGT
*
84696890 TAAAATATAATTTTTATAACTTAAACTTGTA
1 TAAAATATAATTTTTATAACTTAAACATGTA
*
84696921 TAAAA-ATAATTTTT-TAAAGTTAAATCATGTA
1 TAAAATATAATTTTTAT-AACTTAAA-CATGTA
84696952 T
1 T
84696953 GAGTGATTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 1 0.04
30 16 0.57
31 11 0.39
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (31 bp):
TAAAATATAATTTTTATAACTTAAACATGTA
Found at i:84700281 original size:22 final size:24
Alignment explanation
Indices: 84700227--84700282 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
84700217 AAATGAAATT
*
84700227 ATAATAATAAATAATTTATTATATA
1 ATAAT-ATAAATAATGTATTATATA
84700252 ATTAAATATAAAT-ATGTATT-TATA
1 A-T-AATATAAATAATGTATTATATA
84700276 ATAATAT
1 ATAATAT
84700283 TGAAAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 5 0.18
23 1 0.04
24 5 0.18
25 7 0.25
26 7 0.25
27 3 0.11
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAATATAAATAATGTATTATATA
Found at i:84705088 original size:21 final size:21
Alignment explanation
Indices: 84705063--84705102 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
84705053 ATTCCTTGAC
* *
84705063 TTCCTACAATATATTATCTAT
1 TTCCTAAAATAGATTATCTAT
84705084 TTCCTAAAATAGATTATCT
1 TTCCTAAAATAGATTATCT
84705103 CGTATTATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (21 bp):
TTCCTAAAATAGATTATCTAT
Found at i:84713170 original size:26 final size:26
Alignment explanation
Indices: 84713141--84713193 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
84713131 TCAAACATGC
84713141 ATTTAGGTCAATTTA-CTCCTAGAGGT
1 ATTTAGGT-AATTTATCTCCTAGAGGT
* * *
84713167 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGAGGT
84713193 A
1 A
84713194 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGAGGT
Found at i:84714482 original size:24 final size:24
Alignment explanation
Indices: 84714440--84714545 Score: 131
Period size: 24 Copynumber: 4.4 Consensus size: 24
84714430 GCTGGCCAAC
* *
84714440 TCCTGCTCCTTGATCAGCTCTTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
** *
84714465 TATTCTCCTTTATTAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
* *
84714489 TCCTCTCCCTTATCATCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
84714513 TCCTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
84714537 TCTTCTCCT
1 TCCTCTCCT
84714546 GACAGCCTTC
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
24 66 0.97
25 2 0.03
ACGTcount: A:0.20, C:0.35, G:0.05, T:0.41
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:84714496 original size:12 final size:12
Alignment explanation
Indices: 84714481--84714545 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
84714471 CCTTTATTAG
*
84714481 CTCCTAAATCCT
1 CTCCTAAATCAT
*
84714493 CTCCCT-TATCAT
1 CT-CCTAAATCAT
*
84714505 CTCCTAAATCCT
1 CTCCTAAATCAT
** *
84714517 CTCCTTTATCAG
1 CTCCTAAATCAT
*
84714529 CTCCTAAATCTT
1 CTCCTAAATCAT
84714541 CTCCT
1 CTCCT
84714546 GACAGCCTTC
Statistics
Matches: 39, Mismatches: 12, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
11 3 0.08
12 33 0.85
13 3 0.08
ACGTcount: A:0.20, C:0.40, G:0.02, T:0.38
Consensus pattern (12 bp):
CTCCTAAATCAT
Found at i:84723506 original size:270 final size:269
Alignment explanation
Indices: 84722672--84723719 Score: 1975
Period size: 270 Copynumber: 3.9 Consensus size: 269
84722662 CGTCGTCCAT
*
84722672 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGGTTATTTTATAGAT
1 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
* *
84722737 ATATTTAAAAGTCTCTAATATAATATTATATATATATATATAAAATATATCCCAATGACATTTAT
66 ATATTTAAAAGTCTCTAATATAATATTATATATATATAT-GAAAATATATCCCAGTGACATTTAT
84722802 A-TTTAAAATAAAA-ATAAAATATAC-AAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATT
130 ATTTTAAAATAAAATA-AAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATT
84722864 TAAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTG--TATATAT
194 TAAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATAT
84722927 ATATACTTGAA
259 ATATACTTGAA
84722938 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
1 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
*
84723003 ATATTTAAAAGTCTCTAATATAATATTATATATATATATAAAAATATATCCCAGTGACATTTATA
66 ATATTTAAAAGTCTCTAATATAATATTATATATATATATGAAAATATATCCCAGTGACATTTATA
84723068 TTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATTTA
131 TTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATTTA
84723133 AAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATATAT
196 AAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATATAT
84723198 ATACTTGAA
261 ATACTTGAA
84723207 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
1 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
84723272 ATATTTAAAAGTCTCTAATATAATATTATATATATATATGAAAATATATCCCAGTGACATTTATA
66 ATATTTAAAAGTCTCTAATATAATATTATATATATATATGAAAATATATCCCAGTGACATTTATA
84723337 TTTTAAAATAAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATTT
131 TTTTAAAAT-AAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATTT
84723402 AAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATATA
195 AAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATATA
84723467 TATACTTGAA
260 TATACTTGAA
84723477 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
1 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
84723542 ATATTTAAAAGTCTCTAATATAATA-T-TATATATATATGAAAATATATCCCAGTGACATTTATA
66 ATATTTAAAAGTCTCTAATATAATATTATATATATATATGAAAATATATCCCAGTGACATTTATA
*
84723605 TTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTTTTAGAAATTGATTTA
131 TTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATTTA
84723670 AAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATAT
196 AAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATAT
84723720 CGGTGTAGAT
Statistics
Matches: 771, Mismatches: 5, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
265 24 0.03
266 124 0.16
267 200 0.26
268 46 0.06
269 157 0.20
270 220 0.29
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (269 bp):
CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
ATATTTAAAAGTCTCTAATATAATATTATATATATATATGAAAATATATCCCAGTGACATTTATA
TTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATTTA
AAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATATAT
ATACTTGAA
Found at i:84723683 original size:537 final size:535
Alignment explanation
Indices: 84722672--84723719 Score: 1985
Period size: 537 Copynumber: 2.0 Consensus size: 535
84722662 CGTCGTCCAT
*
84722672 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGGTTATTTTATAGAT
1 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
*
84722737 ATATTTAAAAGTCTCTAATATAATATTATATATATATATATAAAATATATCCCAATGACATTTAT
66 ATATTTAAAAGTCTCTAATATAATATTATATATATATATAGAAAATATATCCCAATGACATTTAT
84722802 ATTTAAAATAAAAATAAAATATACAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATTTAA
131 ATTTAAAATAAAAATAAAATATACAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATTTAA
84722867 AGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATATATA
196 AGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATATATA
84722932 CTTGAACTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTT
261 CTTGAACTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTT
84722997 ATAGATATATTTAAAAGTCTCTAATATAATATTATATATATATATAAAAATATATCCCAGTGACA
326 ATAGATATATTTAAAAGTCTCTAATATAATATTATATATATATATAAAAATATATCCCAGTGACA
84723062 TTTATATTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATT
391 TTTATATTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATT
84723127 GATTTAAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATAT
456 GATTTAAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATAT
84723192 ATATATATACTTGAA
521 ATATATATACTTGAA
84723207 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
1 CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
*
84723272 ATATTTAAAAGTCTCTAATATAATATTATATATATATAT-GAAAATATATCCCAGTGACATTTAT
66 ATATTTAAAAGTCTCTAATATAATATTATATATATATATAGAAAATATATCCCAATGACATTTAT
84723336 ATTTTAAAATAAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATT
131 A-TTTAAAATAAAAAT-AAAATATAC-AAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATT
84723401 TAAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATAT
193 TAAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTG--TATATAT
84723466 ATATACTTGAACTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATT
256 ATATACTTGAACTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATT
*
84723531 ATTTTATAGATATATTTAAAAGTCTCTAATATAATA-T-TATATATATATGAAAATATATCCCAG
321 ATTTTATAGATATATTTAAAAGTCTCTAATATAATATTATATATATATATAAAAATATATCCCAG
*
84723594 TGACATTTATATTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTTTTAG
386 TGACATTTATATTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAG
84723659 AAATTGATTTAAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATAT
451 AAATTGATTTAAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATAT
84723720 CGGTGTAGAT
Statistics
Matches: 503, Mismatches: 5, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
534 24 0.05
535 117 0.23
536 9 0.02
537 244 0.49
538 1 0.00
539 108 0.21
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (535 bp):
CTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTTATAGAT
ATATTTAAAAGTCTCTAATATAATATTATATATATATATAGAAAATATATCCCAATGACATTTAT
ATTTAAAATAAAAATAAAATATACAAAATATTTATGAGAGAAAAAAGTGTTAGAAATTGATTTAA
AGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATATATATATA
CTTGAACTAAACTCATCTATAATTTATTAAATGGTGTATATATATTTTAAATTTACGATTATTTT
ATAGATATATTTAAAAGTCTCTAATATAATATTATATATATATATAAAAATATATCCCAGTGACA
TTTATATTTTAAAATAAAATAAAAATATACAAAAATATTTATGAGAGAAAAAAGTGTTAGAAATT
GATTTAAAGAACTAAATACTTGAATTTATTTTAAGAATTTGAAAAATCAAATATATTGTGTATAT
ATATATATACTTGAA
Found at i:84725773 original size:30 final size:29
Alignment explanation
Indices: 84725739--84725797 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
84725729 ATTTATTTAG
*
84725739 GGTTTAAATTTTTTTTTAAAAATAAATTAA
1 GGTTTAAAGTTTTTTTTAAAAAT-AATTAA
**
84725769 GGTTTAGGGTTTTTTTTAAAAATAATTAA
1 GGTTTAAAGTTTTTTTTAAAAATAATTAA
84725798 ATTAGGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (29 bp):
GGTTTAAAGTTTTTTTTAAAAATAATTAA
Found at i:84725799 original size:34 final size:34
Alignment explanation
Indices: 84725761--84725895 Score: 115
Period size: 34 Copynumber: 4.0 Consensus size: 34
84725751 TTTTTAAAAA
*
84725761 TAAATTAAGGTTTAGGGTTTTTTTTAAAAATAAT
1 TAAATTAAGGTTTAGGGTTTTTTTAAAAAATAAT
*
84725795 TAAATT-AGGTTTTAGGG--GTTTTAAATAAATAAAT
1 TAAATTAAGG-TTTAGGGTTTTTTTAAA-AAAT-AAT
*
84725829 TAAATTATA-GTTTAGAG--TTTTTAAGAAAATTAAT
1 TAAATTA-AGGTTTAGGGTTTTTTTAA-AAAA-TAAT
* *
84725863 TAAATTAGGGTCTA--GTTTTTTTAAAAAATAAT
1 TAAATTAAGGTTTAGGGTTTTTTTAAAAAATAAT
84725895 T
1 T
84725896 TTGTGTTTAG
Statistics
Matches: 85, Mismatches: 6, Indels: 22
0.75 0.05 0.19
Matches are distributed among these distances:
32 12 0.14
33 11 0.13
34 58 0.68
35 3 0.04
36 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.14, T:0.44
Consensus pattern (34 bp):
TAAATTAAGGTTTAGGGTTTTTTTAAAAAATAAT
Found at i:84726406 original size:124 final size:125
Alignment explanation
Indices: 84725952--84726471 Score: 511
Period size: 124 Copynumber: 4.2 Consensus size: 125
84725942 ATTTTGTTTT
* * * * *
84725952 TTTTTCTACAGTAGTTTCAAAAAAATTAATTTTGAGAAAACGATTCTGAAAAGATA-ATGTTTCA
1 TTTTTCTACAGTAGTTCCTAAAAAA-TAATTTTGAGAAGACG-TTATGAAAA-A-ACA-GTGTCA
* * * * * * * *
84726016 AAAACACTTCAAGCAGGATGTACTGTCAGTAACATTACTGAAAAAAGCTTCCACGTGGAA-GCTC
61 AAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGATCCCACGTAGAATACTC
* * *
84726080 TTTTTCTACTGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTTTG-AAAAACTAGTTTCAAA
1 TTTTTCTACAGTAGTTCCT-AAAAAATAATTTTGAGAAGAC-GTTATGAAAAAAC-AGTGTCAAA
* ** * *
84726144 AACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAA-ATCCCATTTAGACT-CTT
63 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGATCCCACGTAGAATACTC
* * * * *
84726205 TTTTTCTGCAGTAGTTCTTGAAAAAATAATTTTGAGAAGACGATTATGAAAAAATAATGCCAAAA
1 TTTTTCTACAGTAGTTCCT-AAAAAATAATTTTGAGAAGACG-TTATGAAAAAACAGTGTCAAAA
* * * * *
84726270 A--CTTCAAGCAGGATGCACTTTTAGCGAAATTACTGAAAAAAGCTCCCACGT-GAATATTC
64 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGATCCCACGTAGAATACTC
** **
84726329 TTTTTCTACAGTAGTTCCT-AAATTTTTTTTTGAGAAGACTGTTATGAAAAAACAGTGTCAAAAA
1 TTTTTCTACAGTAGTTCCTAAAAAATAATTTTGAGAAGAC-GTTATGAAAAAACAGTGTCAAAAA
* * * *
84726393 CGCTTCAAGCAGGATGCATTGTCAGCAAAAATACTGAAAAAAGATCCCACGT-GGACACTC
65 CGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGATCCCACGTAGAATACTC
*
84726453 TTTTTCTACAGTAATTCCT
1 TTTTTCTACAGTAGTTCCT
84726472 GTTTGGCTTT
Statistics
Matches: 328, Mismatches: 52, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
122 36 0.11
123 40 0.12
124 92 0.28
125 60 0.18
126 55 0.17
127 4 0.01
128 34 0.10
129 7 0.02
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (125 bp):
TTTTTCTACAGTAGTTCCTAAAAAATAATTTTGAGAAGACGTTATGAAAAAACAGTGTCAAAAAC
GCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGATCCCACGTAGAATACTC
Found at i:84727173 original size:5 final size:5
Alignment explanation
Indices: 84727165--84727205 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
84727155 CAAAAATAAA
84727165 ATTTT ATTTT ATTTT ATTTT ATTTT A-TTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
84727206 GGTTGGCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:84727196 original size:14 final size:14
Alignment explanation
Indices: 84727165--84727205 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
84727155 CAAAAATAAA
84727165 ATTTTATTTTATTTT
1 ATTTTATTTTA-TTT
84727180 ATTTTATTTTATTT
1 ATTTTATTTTATTT
84727194 ATTTTATTTTAT
1 ATTTTATTTTAT
84727206 GGTTGGCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (14 bp):
ATTTTATTTTATTT
Found at i:84732230 original size:40 final size:40
Alignment explanation
Indices: 84732175--84732352 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
84732165 TGGATGATAA
* * *
84732175 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
84732215 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
84732255 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
84732295 CCGGGCTATGTCCCGAAGGTATTCGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
84732335 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84732353 TACTTGGCTT
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84746739 original size:38 final size:38
Alignment explanation
Indices: 84746696--84746771 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
84746686 TTCATCCTTT
*
84746696 TTCATTTCTTTTGGCTGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
84746734 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
84746772 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:84748054 original size:40 final size:40
Alignment explanation
Indices: 84747960--84748104 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
84747950 TACTCGAATG
*
84747960 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
84748001 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
84748041 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
84748081 ATATCCGGGTTAAGACCCAAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
84748105 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:84750406 original size:40 final size:40
Alignment explanation
Indices: 84750351--84750528 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
84750341 TGGATGATAA
* * *
84750351 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
84750391 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
84750431 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
84750471 CCGGGCTATGTCCCGAAGGTATTCGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
84750511 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84750529 TACTTGGCTT
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84784050 original size:18 final size:18
Alignment explanation
Indices: 84784023--84784065 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
84784013 ACTGGGAAAA
84784023 AGAA-ACATATAAGGGAT
1 AGAATACATATAAGGGAT
* *
84784040 AGGATACATATAAGGGTT
1 AGAATACATATAAGGGAT
84784058 AGAATACA
1 AGAATACA
84784066 CACATGGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.49, C:0.07, G:0.23, T:0.21
Consensus pattern (18 bp):
AGAATACATATAAGGGAT
Found at i:84785625 original size:24 final size:25
Alignment explanation
Indices: 84785509--84785631 Score: 83
Period size: 25 Copynumber: 5.0 Consensus size: 25
84785499 TTGAAAGAGT
* *
84785509 GTCCCGTTAT-TAGCTCTCACGAGC
1 GTCCTGTTATATAGCTCTTACGAGC
* * * *
84785533 ATCCTGATATATGGCCCTCTA-GAGC
1 GTCCTGTTATATAGCTCT-TACGAGC
* * * * *
84785558 TTCCTGTTATATGGTTTTTGCGAG-
1 GTCCTGTTATATAGCTCTTACGAGC
*
84785582 GTTCCTGTTATATAGTTCTTACGAGC
1 G-TCCTGTTATATAGCTCTTACGAGC
*
84785608 GTCCTGTTA-ATAGCTCTTATGAGC
1 GTCCTGTTATATAGCTCTTACGAGC
84785632 TCCCTTGATA
Statistics
Matches: 76, Mismatches: 18, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
24 21 0.28
25 53 0.70
26 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (25 bp):
GTCCTGTTATATAGCTCTTACGAGC
Found at i:84794920 original size:23 final size:23
Alignment explanation
Indices: 84794890--84794934 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
84794880 CCCGATCGGT
*
84794890 CGTGATCTTTCATGTGTTGTGGC
1 CGTGATCTTGCATGTGTTGTGGC
*
84794913 CGTGATCTTGCATTTGTTGTGG
1 CGTGATCTTGCATGTGTTGTGG
84794935 GCACACCACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.16, G:0.31, T:0.44
Consensus pattern (23 bp):
CGTGATCTTGCATGTGTTGTGGC
Found at i:84794981 original size:25 final size:25
Alignment explanation
Indices: 84794948--84795008 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
84794938 CACCACAACT
* * *
84794948 TTTGTGAGCTCCC-GTTATATGTCTC
1 TTTGTGAGCTCCCAATTA-AAGGCTC
84794973 TTTGTGAGCTTCCCAATTAAAGGCTC
1 TTTGTGAGC-TCCCAATTAAAGGCTC
84794999 TTTGTGAGCT
1 TTTGTGAGCT
84795009 TCTTAATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 10 0.32
26 18 0.58
27 3 0.10
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.41
Consensus pattern (25 bp):
TTTGTGAGCTCCCAATTAAAGGCTC
Found at i:84794986 original size:26 final size:26
Alignment explanation
Indices: 84794970--84795040 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 26
84794960 CGTTATATGT
84794970 CTCTTTGTGAGCTTCCCAATTAAAGG
1 CTCTTTGTGAGCTTCCCAATTAAAGG
** *
84794996 CTCTTTGTGAGCTTCTTAATTAATGG
1 CTCTTTGTGAGCTTCCCAATTAAAGG
* *
84795022 CTCTCTG-AAGCTTCCCAAT
1 CTCTTTGTGAGCTTCCCAAT
84795041 ATGGCTTGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 9 0.24
26 29 0.76
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (26 bp):
CTCTTTGTGAGCTTCCCAATTAAAGG
Found at i:84795105 original size:25 final size:25
Alignment explanation
Indices: 84794970--84795106 Score: 95
Period size: 25 Copynumber: 5.5 Consensus size: 25
84794960 CGTTATATGT
*
84794970 CTCTTTGTGAGCTTCCCAATTAAAGG
1 CTCTTTG-GAGCTTCCCAATTAATGG
**
84794996 CTCTTTGTGAGCTTCTTAATTAATGG
1 CTCTTTG-GAGCTTCCCAATTAATGG
* *
84795022 CTCTCTGAAGCTTCCCAA-T-ATGG
1 CTCTTTGGAGCTTCCCAATTAATGG
**
84795045 CT-TGCTT-GAATTTCCCAA-TATATGG
1 CTCT--TTGGAGCTTCCCAATTA-ATGG
* ** *
84795070 CTATTCAGAGCTTCCTAATTAATGG
1 CTCTTTGGAGCTTCCCAATTAATGG
84795095 CTCTTTGGAGCT
1 CTCTTTGGAGCT
84795107 ACCTGTTATT
Statistics
Matches: 86, Mismatches: 18, Indels: 15
0.72 0.15 0.13
Matches are distributed among these distances:
22 1 0.01
23 15 0.17
24 3 0.03
25 35 0.41
26 32 0.37
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (25 bp):
CTCTTTGGAGCTTCCCAATTAATGG
Found at i:84809771 original size:34 final size:34
Alignment explanation
Indices: 84809692--84809780 Score: 83
Period size: 34 Copynumber: 2.6 Consensus size: 34
84809682 TGGACATTGT
* * * **
84809692 ACTGAAATGGGCTAAGGCCTACATTGATACTATT
1 ACTGATATGGGCTAAGGCCCACAATGATACTACC
* *
84809726 ACTG-TATTGGGCTAAGGCCCACAATGATATTGCC
1 ACTGATA-TGGGCTAAGGCCCACAATGATACTACC
84809760 ACTGATATGGGCTTAA-GCCCA
1 ACTGATATGGGC-TAAGGCCCA
84809781 GACTGTTCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
33 1 0.02
34 39 0.87
35 5 0.11
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (34 bp):
ACTGATATGGGCTAAGGCCCACAATGATACTACC
Found at i:84810662 original size:25 final size:26
Alignment explanation
Indices: 84810634--84810686 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
84810624 GACTATGATA
*
84810634 AAAAATTATA-AAAT-AAAAAATAATT
1 AAAAATTACATAAATGAAAAAAT-ATT
84810659 -AAAATTACATAAATGAAAAAATATT
1 AAAAATTACATAAATGAAAAAATATT
84810684 AAA
1 AAA
84810687 TAAAATTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
24 8 0.33
25 7 0.29
26 9 0.38
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (26 bp):
AAAAATTACATAAATGAAAAAATATT
Found at i:84813083 original size:22 final size:21
Alignment explanation
Indices: 84813053--84813103 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 21
84813043 TTTTACCAAA
*
84813053 TTAACCTTAGTATAATAAACAT
1 TTAAGCTTA-TATAATAAACAT
84813075 TTAAGC-T-TATAATAAACAT
1 TTAAGCTTATATAATAAACAT
84813094 TTAAGCTTAT
1 TTAAGCTTAT
84813104 TATGGATGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 18 0.69
20 1 0.04
21 2 0.08
22 5 0.19
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (21 bp):
TTAAGCTTATATAATAAACAT
Found at i:84813087 original size:19 final size:19
Alignment explanation
Indices: 84813063--84813103 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
84813053 TTAACCTTAG
84813063 TATAATAAACATTTAAGCT
1 TATAATAAACATTTAAGCT
84813082 TATAATAAACATTTAAGCT
1 TATAATAAACATTTAAGCT
84813101 TAT
1 TAT
84813104 TATGGATGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (19 bp):
TATAATAAACATTTAAGCT
Found at i:84819437 original size:16 final size:16
Alignment explanation
Indices: 84819413--84819467 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
84819403 AAGGAAGTGA
84819413 TGTTATTCTCTAGGAT
1 TGTTATTCTCTAGGAT
*
84819429 TGTTCTTCTCT----T
1 TGTTATTCTCTAGGAT
84819441 TGTTATTCTCTAGGAT
1 TGTTATTCTCTAGGAT
*
84819457 TGTTCTTCTCT
1 TGTTATTCTCT
84819468 TTCTCTATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
12 11 0.34
16 21 0.66
ACGTcount: A:0.11, C:0.18, G:0.15, T:0.56
Consensus pattern (16 bp):
TGTTATTCTCTAGGAT
Found at i:84819453 original size:28 final size:28
Alignment explanation
Indices: 84819413--84819478 Score: 114
Period size: 28 Copynumber: 2.3 Consensus size: 28
84819403 AAGGAAGTGA
84819413 TGTTATTCTCTAGGATTGTTCTTCTCTT
1 TGTTATTCTCTAGGATTGTTCTTCTCTT
84819441 TGTTATTCTCTAGGATTGTTCTTCTCTT
1 TGTTATTCTCTAGGATTGTTCTTCTCTT
*
84819469 TCTCTATTCT
1 TGT-TATTCT
84819479 TTCTTCATCA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 30 0.83
29 6 0.17
ACGTcount: A:0.11, C:0.20, G:0.12, T:0.58
Consensus pattern (28 bp):
TGTTATTCTCTAGGATTGTTCTTCTCTT
Found at i:84823058 original size:46 final size:46
Alignment explanation
Indices: 84823008--84823183 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
84822998 TGTTTGGGCA
84823008 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84823054 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* **
84823099 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
84823147 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84823184 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 30 0.28
48 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84823163 original size:93 final size:93
Alignment explanation
Indices: 84823004--84823174 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
84822994 AGGATGTTTG
* ***
84823004 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAG
84823069 TTGAGTCCGAGTTCATGAAATGTAACTA
66 TTGAGTCCGAGTTCATGAAATGTAACTA
*
84823097 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAG
84823162 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
84823175 TGCTTATGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAAATGTAACTA
Found at i:84827738 original size:43 final size:42
Alignment explanation
Indices: 84827686--84827874 Score: 243
Period size: 43 Copynumber: 4.4 Consensus size: 42
84827676 TTTAACGTAA
* * *
84827686 TGGCACTAAGTGTGCGATACAATTATAGTTTCGGCTACTAAGT
1 TGGCACTAAGTGTGCAATACAATTATAGCTTCGGCTATTAA-T
* * *
84827729 TGGGACTAAGTGTGCAATATAATTATAGCTTCAGCTTATTAAT
1 TGGCACTAAGTGTGCAATACAATTATAGCTTCGGC-TATTAAT
* *
84827772 TGGCACTAAGTGTGCGATACAATTATAGCTTCCGCTAATTAAT
1 TGGCACTAAGTGTGCAATACAATTATAGCTTCGGCT-ATTAAT
**
84827815 TGGCACTAAGTGTGCAATACAATTATAGCTTCGATTAATTAAT
1 TGGCACTAAGTGTGCAATACAATTATAGCTTCGGCT-ATTAAT
*
84827858 TAGCACTAAGTGTGCAA
1 TGGCACTAAGTGTGCAA
84827875 GTTCGTTGAA
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 1 0.01
43 123 0.95
44 5 0.04
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (42 bp):
TGGCACTAAGTGTGCAATACAATTATAGCTTCGGCTATTAAT
Found at i:84827831 original size:86 final size:86
Alignment explanation
Indices: 84827686--84827872 Score: 279
Period size: 86 Copynumber: 2.2 Consensus size: 86
84827676 TTTAACGTAA
* * * *
84827686 TGGCACTAAGTGTGCGATACAATTATAGTTTCGGCTACTAAGTTGGGACTAAGTGTGCAATATAA
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCCGCTACTAAGTTGGCACTAAGTGTGCAATACAA
*
84827751 TTATAGCTTCAGCTT-ATTAAT
66 TTATAGCTTC-GATTAATTAAT
*
84827772 TGGCACTAAGTGTGCGATACAATTATAGCTTCCGCTAATTAA-TTGGCACTAAGTGTGCAATACA
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCCGCT-ACTAAGTTGGCACTAAGTGTGCAATACA
84827836 ATTATAGCTTCGATTAATTAAT
65 ATTATAGCTTCGATTAATTAAT
*
84827858 TAGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
84827873 AAGTTCGTTG
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
85 3 0.03
86 85 0.92
87 4 0.04
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (86 bp):
TGGCACTAAGTGTGCGATACAATTATAGCTTCCGCTACTAAGTTGGCACTAAGTGTGCAATACAA
TTATAGCTTCGATTAATTAAT
Found at i:84833299 original size:30 final size:31
Alignment explanation
Indices: 84833223--84833305 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
84833213 TCAGTCTCGA
84833223 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
84833253 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
84833284 CATATCACT-GGCCGAATCCTTT
1 CATATCACTGGGCCGAAGCCTTT
84833306 ACTGTAAGTG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 17 0.33
31 34 0.67
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:84833584 original size:26 final size:26
Alignment explanation
Indices: 84833513--84833755 Score: 294
Period size: 26 Copynumber: 9.3 Consensus size: 26
84833503 CTAGAGGCCT
*
84833513 AGCCTCTTTT-AAT-AACTGGGGCAAA
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
84833538 AGCCCTTTT-GGTAAACTGGGGCGTA
1 AGCCCTTTTCAATAAACTGGGGCATA
84833563 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*** **
84833589 AGCCCCAGTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
84833615 AGCCCTTTCCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
84833641 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
84833667 AGCCCCTTTCCAATAAACTGGGGCATA
1 AG-CCCTTTTCAATAAACTGGGGCATA
*
84833694 AGCCATTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
84833720 AGCCCTTTTTCAATAAACTAGGGCATA
1 AGCCC-TTTTCAATAAACTGGGGCATA
*
84833747 ATCCCTTTT
1 AGCCCTTTT
84833756 GCACTTCCTC
Statistics
Matches: 185, Mismatches: 29, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
24 6 0.03
25 23 0.12
26 109 0.59
27 47 0.25
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:84833697 original size:53 final size:52
Alignment explanation
Indices: 84833526--84833755 Score: 327
Period size: 53 Copynumber: 4.4 Consensus size: 52
84833516 CTCTTTTAAT
* * *
84833526 AACTGGGGCAAAAGCCCTTTT-GGTAAACTGGGGCGTAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTCCAATA
***
84833577 AACTGGGGCATAAGCCCCAGTCGGTAAACTGGGGCATAAGCCCTTTCCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTCCAATA
84833629 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCCTTTCCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAG-CCCTTTCCAATA
* ** *
84833682 AACTGGGGCATAAGCCATTTTCAATAAACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC-TTTCCAATA
* *
84833735 AACTAGGGCATAATCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
84833756 GCACTTCCTC
Statistics
Matches: 160, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
51 17 0.11
52 68 0.43
53 75 0.47
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTCCAATA
Found at i:84834647 original size:27 final size:27
Alignment explanation
Indices: 84834556--84834639 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 27
84834546 GGGCATATTT
* *
84834556 GTCATTTTACCATACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
* *
84834583 GTCACTTTACCCTACAAGGGCTTTATG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
84834610 ATCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
84834637 GTC
1 GTC
84834640 TTTTTACCTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:84834731 original size:27 final size:27
Alignment explanation
Indices: 84834701--84834835 Score: 103
Period size: 27 Copynumber: 4.9 Consensus size: 27
84834691 GTAAATCTAC
84834701 AAACCAGGGGTATTTCAGTAATTTTGT
1 AAACCAGGGGTATTTCAGTAATTTTGT
**
84834728 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAGGGGTATTTC-AGTAATTTTGT
* * *
84834754 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAGGGGTATTTCAGTAATTTTGT
* ** **
84834784 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAGGGGTATTTCAGTAATTTTGT
* **
84834811 AAACCAGAGGTATTTTTGTAATTTT
1 AAACCAGGGGTATTTCAGTAATTTT
84834836 CCTAATCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.01
27 62 0.70
28 7 0.08
29 18 0.20
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAGGGGTATTTCAGTAATTTTGT
Found at i:84834849 original size:27 final size:25
Alignment explanation
Indices: 84834763--84834849 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 25
84834753 TAGAAAGTCA
* *
84834763 AGGGTATTTCTGTAATTTTGTAAATC
1 AGGGTATTTTTGTAATTTTCT-AATC
* * *
84834789 AGGGGTATTTTGGTAATTTTACAAACC
1 A-GGGTATTTTTGTAATTTT-CTAATC
84834816 AGAGGTATTTTTGTAATTTTCCTAATC
1 AG-GGTATTTTTGTAATTTT-CTAATC
84834843 GAGGGTA
1 -AGGGTA
84834850 AAATGGTAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
26 2 0.04
27 44 0.92
28 2 0.04
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (25 bp):
AGGGTATTTTTGTAATTTTCTAATC
Found at i:84834887 original size:54 final size:54
Alignment explanation
Indices: 84834839--84835208 Score: 329
Period size: 54 Copynumber: 6.7 Consensus size: 54
84834829 TAATTTTCCT
*
84834839 AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAATTTTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTG------TA
* * ***** * * *
84834899 CAAACCAGAGGTATTTTTGTAATTTTCCTA-ATCGAGGGTAAAACGGTAATTCTGTA
1 -AATCGAG-GGTAAAACGGTAATTCT-GTAAATCGAGGGTAAAACGATAATTCTGTA
* *
84834955 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
* * *
84835009 AATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAC-AGTAATTCTAG-G
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCT-GTA
* * * *
84835063 AATCGAGGGTAAAACAGTAATTCTAG-GAATCGAGGGTAAAA-TAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCT-GTAAATCGAGGGTAAAACGA-TAATTCTGTA
* * * *
84835117 AATCGAGGGTAAAATGGTAATTCTAG-GAATCGAGGGAAAAATGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCT-GTAAATCGAGGGTAAAACGATAATTCTGTA
* * *
84835171 AATCGAGGATAAAACGATAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
84835209 CTTTGGTAAT
Statistics
Matches: 260, Mismatches: 39, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
53 3 0.01
54 206 0.79
55 7 0.03
56 2 0.01
61 5 0.02
62 35 0.13
63 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
Found at i:84834890 original size:27 final size:27
Alignment explanation
Indices: 84834839--84834893 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
84834829 TAATTTTCCT
* *
84834839 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
84834866 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
84834893 A
1 A
84834894 TTTTACAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:84834900 original size:89 final size:89
Alignment explanation
Indices: 84834801--84834982 Score: 355
Period size: 89 Copynumber: 2.0 Consensus size: 89
84834791 GGGTATTTTG
*
84834801 GTAATTTTACAAACCAGAGGTATTTTTGTAATTTTCCTAATCGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTACAAACCAGAGGTATTTTTGTAATTTTCCTAATCGAGGGTAAAACGGTAATTCTGTA
84834866 AATCGAGGGTAAAACGATAATTCT
66 AATCGAGGGTAAAACGATAATTCT
84834890 GTAATTTTACAAACCAGAGGTATTTTTGTAATTTTCCTAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTACAAACCAGAGGTATTTTTGTAATTTTCCTAATCGAGGGTAAAACGGTAATTCTGTA
84834955 AATCGAGGGTAAAACGATAATTCT
66 AATCGAGGGTAAAACGATAATTCT
84834979 GTAA
1 GTAA
84834983 ATCGAGGGTA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 92 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (89 bp):
GTAATTTTACAAACCAGAGGTATTTTTGTAATTTTCCTAATCGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAACGATAATTCT
Found at i:84834947 original size:27 final size:27
Alignment explanation
Indices: 84834928--84835208 Score: 352
Period size: 27 Copynumber: 10.4 Consensus size: 27
84834918 TAATTTTCCT
84834928 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
84834955 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
84834982 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
84835009 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
84835036 AATCGAGGGTAAAACAGTAATTCTAG-G
1 AATCGAGGGTAAAACGGTAATTCT-GTA
* *
84835063 AATCGAGGGTAAAACAGTAATTCTAG-G
1 AATCGAGGGTAAAACGGTAATTCT-GTA
** *
84835090 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
84835117 AATCGAGGGTAAAATGGTAATTCTAG-G
1 AATCGAGGGTAAAACGGTAATTCT-GTA
* * *
84835144 AATCGAGGGAAAAATGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
84835171 AATCGAGGATAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
84835198 AATCGAGGGTA
1 AATCGAGGGTA
84835209 CTTTGGTAAT
Statistics
Matches: 228, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.00
27 227 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:84835218 original size:27 final size:27
Alignment explanation
Indices: 84835188--84835361 Score: 113
Period size: 27 Copynumber: 6.4 Consensus size: 27
84835178 GATAAAACGA
*
84835188 TAATTTTGTAAATCGAGGGTACTTTGG
1 TAATTTTATAAATCGAGGGTACTTTGG
* * * * *
84835215 TAATTTTACAAATTGAGGGCATTTTAG
1 TAATTTTATAAATCGAGGGTACTTTGG
* ***
84835242 TAATTTTA-CAATCGACACTA-TTTCGG
1 TAATTTTATAAATCGAGGGTACTTT-GG
* *
84835268 TAATTTTATAAACCGGGGGTACTTTGG
1 TAATTTTATAAATCGAGGGTACTTTGG
* * * **
84835295 TAATTTTACAAGTCGAAGGTA-TTTCAA
1 TAATTTTATAAATCGAGGGTACTTT-GG
* *
84835322 TAATTTTACAAATCGAGGGTA-TTTCAG
1 TAATTTTATAAATCGAGGGTACTTT-GG
84835349 TAATTTTAGTAAA
1 TAATTTTA-TAAA
84835362 CTAAAGTATT
Statistics
Matches: 112, Mismatches: 30, Indels: 9
0.74 0.20 0.06
Matches are distributed among these distances:
25 3 0.03
26 18 0.16
27 85 0.76
28 6 0.05
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTACTTTGG
Found at i:84835271 original size:53 final size:54
Alignment explanation
Indices: 84835213--84835356 Score: 166
Period size: 54 Copynumber: 2.7 Consensus size: 54
84835203 AGGGTACTTT
* *
84835213 GGTAATTTTACAAATTGAGGGCATTTTAGTAATTTTACAA-TCGACA-CTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAGTCGA-AGCTATTTC
* * * * * *
84835266 GGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAGTCGAAGCTATTTC
** *
84835320 AATAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
1 GGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTA
84835357 GTAAACTAAA
Statistics
Matches: 73, Mismatches: 16, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
53 34 0.47
54 39 0.53
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (54 bp):
GGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAGTCGAAGCTATTTC
Found at i:84835289 original size:80 final size:81
Alignment explanation
Indices: 84835188--84835362 Score: 217
Period size: 80 Copynumber: 2.2 Consensus size: 81
84835178 GATAAAACGA
* * * * * *
84835188 TAATTTTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGGGCATTTTAGTAATTTTAC-A
1 TAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAATAATTTTACAA
*
84835252 ATCGACACTATTTCGG
66 ATCGACACTATTTCAG
* * *
84835268 TAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAATAATTTTACAA
1 TAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAATAATTTTACAA
***
84835333 ATCGAGGGTATTTCAG
66 ATCGACACTATTTCAG
84835349 TAATTTTAGTAAAC
1 TAATTTTA-TAAAC
84835363 TAAAGTATTC
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 54 0.68
81 21 0.26
82 5 0.06
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (81 bp):
TAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAAATCGAAGGCATTTCAATAATTTTACAA
ATCGACACTATTTCAG
Found at i:84837291 original size:46 final size:44
Alignment explanation
Indices: 84837202--84837361 Score: 135
Period size: 46 Copynumber: 3.5 Consensus size: 44
84837192 TGCTAATGTG
*
84837202 ATGTCCTAGACATGGTCTTACACTGACACATCTCGTAGCCGATGC
1 ATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGCCGATGC
* *
84837247 ATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AGGTCGATGC
1 ATGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA-GCCGATGC
* * * * * *
84837293 ATGTCCCAAACTTGTCTTACGCTAGCACTCGTCTC-CATGCCGATGCC
1 ATGTCCCAGACATGTCTTACACT-G-ACACATCTCGTA-GCCGATG-C
*
84837340 ATGTCCTAGACATGGTCTTACA
1 ATGTCCCAGACAT-GTCTTACA
84837362 TTGGCTCTCA
Statistics
Matches: 92, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
44 12 0.13
45 13 0.14
46 47 0.51
47 12 0.13
48 8 0.09
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (44 bp):
ATGTCCCAGACATGTCTTACACTGACACATCTCGTAGCCGATGC
Found at i:84838172 original size:25 final size:25
Alignment explanation
Indices: 84838142--84838192 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
84838132 CAAAAATATT
*
84838142 CAAGAAAAGCCATTAAAATCATTTA
1 CAAGAAAAGCCATTAAAATCACTTA
84838167 CAAGAAAAGCCATTAAAATCACTTA
1 CAAGAAAAGCCATTAAAATCACTTA
84838192 C
1 C
84838193 TTGTGAAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.51, C:0.20, G:0.08, T:0.22
Consensus pattern (25 bp):
CAAGAAAAGCCATTAAAATCACTTA
Found at i:84844012 original size:40 final size:40
Alignment explanation
Indices: 84843957--84844212 Score: 403
Period size: 40 Copynumber: 6.5 Consensus size: 40
84843947 GAGAATTGAG
84843957 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
84843997 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
84844037 GGTGTTATATCC-GGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
84844075 AGTGATATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
84844115 -GATGTTATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AG-TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
84844155 GGTGTTATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
84844194 AGTGATATATCTGGGCTAA
1 AGTGATATATCCGGGCTAA
84844213 ACCTCGAAGG
Statistics
Matches: 200, Mismatches: 12, Indels: 9
0.90 0.05 0.04
Matches are distributed among these distances:
38 28 0.14
39 49 0.25
40 122 0.61
41 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:84844066 original size:78 final size:80
Alignment explanation
Indices: 84843962--84844212 Score: 409
Period size: 78 Copynumber: 3.2 Consensus size: 80
84843952 TTGAGAGTGA
84843962 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
84844027 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
*
84844042 TATATCC-GGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGTTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
*
84844105 CATTCGTGCTGATGT
66 CATTCGTGCTGGTGT
* * *
84844120 TATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGT-CCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
* *
84844184 CATTCGTGCTAGTGA
66 CATTCGTGCTGGTGT
*
84844199 TATATCTGGGCTAA
1 TATATCCGGGCTAA
84844213 ACCTCGAAGG
Statistics
Matches: 159, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
78 68 0.43
79 49 0.31
80 42 0.26
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTGGTGT
Found at i:84844226 original size:118 final size:119
Alignment explanation
Indices: 84843957--84844233 Score: 454
Period size: 118 Copynumber: 2.3 Consensus size: 119
84843947 GAGAATTGAG
84843957 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGATATATCCGGGCTAAGTCCC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGAGTGATATATCCGGGCTAAGTCCC
*
84844021 GAAGAGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCGAAGAGCATTCGTGCT
66 AAAGAGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCGAAGAGCATTCGTGCT
* *
84844075 AGTGATATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGA-TGTTATATCCGGGCTAAGTCCC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGAGTGATATATCCGGGCTAAGTCCC
84844139 AAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
66 AAAGAGCATTCGTGCTGGTGTTATATCC-GGCTAAGTCCGAAGAGCATTCGTGCT
* * *
84844194 AGTGATATATCTGGGCTAA-ACCTCGAAG-GCATTCATGCTG
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTG
84844234 GAATTATGAG
Statistics
Matches: 149, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
118 100 0.67
119 49 0.33
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (119 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGAGTGATATATCCGGGCTAAGTCCC
AAAGAGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCGAAGAGCATTCGTGCT
Found at i:84856895 original size:18 final size:18
Alignment explanation
Indices: 84856874--84856909 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
84856864 GTACAATGTC
84856874 ATATCCAAGATATGGTCT
1 ATATCCAAGATATGGTCT
84856892 ATATCCAAGATATGGTCT
1 ATATCCAAGATATGGTCT
84856910 TACATGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (18 bp):
ATATCCAAGATATGGTCT
Found at i:84862987 original size:34 final size:34
Alignment explanation
Indices: 84862949--84863018 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
84862939 ATTCATATAA
*
84862949 AAAACTCATTGAAATCATTCACATTGTCCCTTAT
1 AAAACTCATTCAAATCATTCACATTGTCCCTTAT
84862983 AAAACTCATTCAAATCATTCACATTGTCCCTTAT
1 AAAACTCATTCAAATCATTCACATTGTCCCTTAT
84863017 AA
1 AA
84863019 GGCTCTATGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.34
Consensus pattern (34 bp):
AAAACTCATTCAAATCATTCACATTGTCCCTTAT
Found at i:84873289 original size:5 final size:5
Alignment explanation
Indices: 84873279--84873376 Score: 74
Period size: 6 Copynumber: 18.2 Consensus size: 5
84873269 TGAATCCTCC
*
84873279 TATTT TATTT TA-TT TATTCT TATTT TCATTT T-CTT TATTT TATTTT
1 TATTT TATTT TATTT TATT-T TATTT T-ATTT TATTT TATTT TA-TTT
* *
84873325 TATTTT TCTTT TGATTTT TATTT TCATTT CAATTT TATTAT TATTT TATTT
1 TA-TTT TATTT T-A-TTT TATTT T-ATTT -TATTT TATT-T TATTT TATTT
84873376 T
1 T
84873377 GAAAGACATA
Statistics
Matches: 77, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
4 7 0.09
5 32 0.42
6 34 0.44
7 4 0.05
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.74
Consensus pattern (5 bp):
TATTT
Found at i:84873315 original size:21 final size:20
Alignment explanation
Indices: 84873279--84873353 Score: 80
Period size: 21 Copynumber: 3.5 Consensus size: 20
84873269 TGAATCCTCC
*
84873279 TATTTT-ATTTTATTTATTCT
1 TATTTTCATTTTCTTTATT-T
84873299 TATTTTCATTTTCTTTATTT
1 TATTTTCATTTTCTTTATTT
*
84873319 TATTTTTATTTTTCTTTTGATTTT
1 TATTTTCA-TTTTC-TTT-A-TTT
84873343 TATTTTCATTT
1 TATTTTCATTT
84873354 CAATTTTATT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
20 14 0.30
21 16 0.34
22 3 0.06
23 4 0.09
24 10 0.21
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.76
Consensus pattern (20 bp):
TATTTTCATTTTCTTTATTT
Found at i:84873318 original size:35 final size:37
Alignment explanation
Indices: 84873279--84873371 Score: 102
Period size: 41 Copynumber: 2.4 Consensus size: 37
84873269 TGAATCCTCC
84873279 TATTTTATTTTATTTATTC-TT-ATTTTCATTTTC-TT
1 TATTTTATTTTATTT-TTCTTTGATTTTCATTTTCATT
*
84873314 TATTTTATTTTTATTTTTCTTTTGATTTTTATTTTCATT
1 TATTTTA-TTTTATTTTTC-TTTGATTTTCATTTTCATT
84873353 TCAATTTTATTATTATTTT
1 T--ATTTTATT-TTATTTT
84873372 ATTTTGAAAG
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
35 10 0.20
36 8 0.16
37 2 0.04
38 11 0.22
39 3 0.06
40 2 0.04
41 13 0.27
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.74
Consensus pattern (37 bp):
TATTTTATTTTATTTTTCTTTGATTTTCATTTTCATT
Found at i:84873325 original size:15 final size:15
Alignment explanation
Indices: 84873282--84873325 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
84873272 ATCCTCCTAT
84873282 TTTATTTTATTTATTC
1 TTTATTTTATTT-TTC
84873298 -TTATTTTCA-TTTTC
1 TTTATTTT-ATTTTTC
84873312 TTTATTTTATTTTT
1 TTTATTTTATTTTT
84873326 ATTTTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 4 0.16
15 20 0.80
16 1 0.04
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTATTTTATTTTTC
Found at i:84873349 original size:17 final size:16
Alignment explanation
Indices: 84873316--84873376 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
84873306 ATTTTCTTTA
84873316 TTTTATTTTTATTTTTC
1 TTTTATTTTTA-TTTTC
84873333 TTTTGATTTTTATTTTC
1 TTTT-ATTTTTATTTTC
* * *
84873350 ATTTCAATTTTATTATTA
1 -TTTTATTTTTATT-TTC
84873368 TTTTATTTT
1 TTTTATTTT
84873377 GAAAGACATA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
17 24 0.67
18 12 0.33
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTTATTTTTATTTTC
Found at i:84880335 original size:13 final size:13
Alignment explanation
Indices: 84880317--84880357 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
84880307 CTGCCAAAGA
*
84880317 GACACGGCTGTGT
1 GACACGCCTGTGT
*
84880330 GACACGCCTATGT
1 GACACGCCTGTGT
84880343 GACACGCCTGTGT
1 GACACGCCTGTGT
84880356 GA
1 GA
84880358 GGAAGTTCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.22
Consensus pattern (13 bp):
GACACGCCTGTGT
Found at i:84889015 original size:40 final size:39
Alignment explanation
Indices: 84888931--84889152 Score: 245
Period size: 39 Copynumber: 5.6 Consensus size: 39
84888921 TCGAATGATG
* * * *
84888931 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAT
* * *
84888970 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
84889011 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAT
*
84889050 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAT
*
84889089 TCCGGGTTAAGTCCCGAAGGCATCT-GTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCAT-TGGTGCGAGTTACTAAT
* *
84889128 AACCGGGCTATGTCCCGAAGGCATT
1 -TCCGGGCTAAG-CCCGAAGGCATT
84889153 TGAACGAGTA
Statistics
Matches: 162, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 76 0.47
40 76 0.47
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAT
Found at i:84889032 original size:39 final size:40
Alignment explanation
Indices: 84888931--84889154 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
84888921 TCGAATGATG
* * *
84888931 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
84888970 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
84889011 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
84889050 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
84889089 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
84889128 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
84889155 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 75 0.46
40 78 0.48
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:84889120 original size:79 final size:79
Alignment explanation
Indices: 84888931--84889152 Score: 279
Period size: 79 Copynumber: 2.8 Consensus size: 79
84888921 TCGAATGATG
* * * * * * *
84888931 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATTG
*
84888996 GTGCGAGTTACTAAT
65 GTGCGAGTTACTAAA
84889011 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCATT
84889073 GGTGCGAGTTACTAAA
64 GGTGCGAGTTACTAAA
* * * *
84889089 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCAT-TGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
84889153 TGAACGAGTA
Statistics
Matches: 125, Mismatches: 11, Indels: 12
0.84 0.07 0.08
Matches are distributed among these distances:
78 36 0.29
79 60 0.48
80 29 0.23
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTGG
TGCGAGTTACTAAA
Found at i:84889185 original size:79 final size:79
Alignment explanation
Indices: 84888984--84889187 Score: 211
Period size: 79 Copynumber: 2.6 Consensus size: 79
84888974 GGACTAAGAT
* ** * * *
84888984 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCT-AAGCCCGAAGGCATTGGTGCGAGTTACTA
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA
*
84889048 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** *
84889062 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATCT-GTGCGAGTTACT
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAT-TGGTGCGAGTTACT
*
84889126 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
84889142 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
84889188 TACGTGATTC
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
78 34 0.31
79 49 0.45
80 25 0.23
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTGGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA
ATACCGGGCTAAGC
Found at i:84903028 original size:6 final size:6
Alignment explanation
Indices: 84903001--84903078 Score: 70
Period size: 6 Copynumber: 12.8 Consensus size: 6
84902991 TTGAATCTTC
* *
84903001 TTATTT TT-TTAT TTATTC TTATTT TTA-TT TTATTT TATTTATT TTATTT
1 TTATTT TTATT-T TTATTT TTATTT TTATTT TTATTT T-TAT-TT TTATTT
* * *
84903050 TTATTT TTCTTT TTCTTT TGATTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATT
84903079 CTCATTTCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
5 7 0.12
6 43 0.73
7 6 0.10
8 3 0.05
ACGTcount: A:0.15, C:0.04, G:0.01, T:0.79
Consensus pattern (6 bp):
TTATTT
Found at i:84903033 original size:5 final size:5
Alignment explanation
Indices: 84903007--84903056 Score: 59
Period size: 5 Copynumber: 9.8 Consensus size: 5
84902997 CTTCTTATTT
84903007 TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA -TTTA TTTTA TTTTTA
1 TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA
84903053 TTTT
1 TTTT
84903057 TCTTTTTCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
4 8 0.20
5 19 0.47
6 11 0.28
7 2 0.05
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:84903039 original size:26 final size:25
Alignment explanation
Indices: 84903007--84903078 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
84902997 CTTCTTATTT
84903007 TTTTATTTATTCTTATTTTTATTTTA
1 TTTTATTTATT-TTATTTTTATTTTA
84903033 TTTTATTTATTTTATTTTTATTTT-
1 TTTTATTTATTTTATTTTTATTTTA
* *
84903057 TCTT-TTTCTTTTGATTTTTATT
1 TTTTATTTATTTT-ATTTTTATT
84903079 CTCATTTCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.16
24 12 0.28
25 13 0.30
26 11 0.26
ACGTcount: A:0.15, C:0.04, G:0.01, T:0.79
Consensus pattern (25 bp):
TTTTATTTATTTTATTTTTATTTTA
Found at i:84905831 original size:27 final size:26
Alignment explanation
Indices: 84905800--84905949 Score: 149
Period size: 27 Copynumber: 5.6 Consensus size: 26
84905790 TAAATTGTAC
84905800 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
84905827 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
84905853 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
84905881 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
84905908 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
84905935 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84905950 GACTCGATAT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 101 0.97
28 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:84905861 original size:54 final size:53
Alignment explanation
Indices: 84905800--84905949 Score: 167
Period size: 54 Copynumber: 2.8 Consensus size: 53
84905790 TAAATTGTAC
*
84905800 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAAATGAATATGT
* ** ** *
84905853 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGATTTGATTATGT
1 A-GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAAATGAATATGT
* * *
84905908 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
84905950 GACTCGATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
53 2 0.02
54 75 0.93
55 4 0.05
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGAATATGT
Found at i:84905940 original size:81 final size:81
Alignment explanation
Indices: 84905801--84905949 Score: 219
Period size: 81 Copynumber: 1.8 Consensus size: 81
84905791 AAATTGTACA
*
84905801 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
84905866 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * ** * *
84905882 GCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-ATAGCACTGAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
84905946 TGCG
65 TGCG
84905950 GACTCGATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.03
81 58 0.97
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84918216 original size:39 final size:39
Alignment explanation
Indices: 84918172--84918249 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
84918162 TTAAAACATA
84918172 GGCATTTATGCATTGATTGTTTAAACTTTAAGAAATTAG
1 GGCATTTATGCATTGATTGTTTAAACTTTAAGAAATTAG
*
84918211 GGCATTTATGCATTGATTGTTTAATCTTTAAGAAATTAG
1 GGCATTTATGCATTGATTGTTTAAACTTTAAGAAATTAG
84918250 AGAATCAAGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (39 bp):
GGCATTTATGCATTGATTGTTTAAACTTTAAGAAATTAG
Found at i:84922741 original size:27 final size:27
Alignment explanation
Indices: 84922711--84922887 Score: 151
Period size: 27 Copynumber: 6.6 Consensus size: 27
84922701 ATATTGAGCC
* *
84922711 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
84922738 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
84922765 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
84922793 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
84922820 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
84922846 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
84922873 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
84922888 GTACAATTTA
Statistics
Matches: 123, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 21 0.17
27 79 0.64
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:84922804 original size:55 final size:54
Alignment explanation
Indices: 84922711--84922887 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
84922701 ATATTGAGCC
* * * *
84922711 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
84922765 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
* ** * *
84922820 CGCACACTTAGTGC-ATCAT-TTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
*
84922873 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
84922888 GTACAATTTA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 36 0.35
54 25 0.24
55 42 0.41
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:84930726 original size:27 final size:27
Alignment explanation
Indices: 84930696--84930873 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
84930686 ATATTGAGCC
* *
84930696 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
84930723 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
84930750 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
84930778 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
84930805 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
84930832 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
84930859 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
84930874 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:84930835 original size:82 final size:81
Alignment explanation
Indices: 84930717--84930872 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
84930707 TGCTATATAA
* * * *
84930717 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
84930782 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
84930799 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
84930863 CCCTTAGTGC
65 CACTTAGTGC
84930873 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:84942745 original size:9 final size:9
Alignment explanation
Indices: 84942733--84942815 Score: 103
Period size: 9 Copynumber: 8.9 Consensus size: 9
84942723 TTATTGTTAC
84942733 ATGTGTTTA
1 ATGTGTTTA
*
84942742 ATGTGTTCA
1 ATGTGTTTA
84942751 ATGTGTTTA
1 ATGTGTTTA
*
84942760 ATTTGTTTA
1 ATGTGTTTA
84942769 ATGTGTGATTA
1 ATGTGT--TTA
84942780 ATGTGTTTA
1 ATGTGTTTA
*
84942789 ATGTATTTA
1 ATGTGTTTA
84942798 ATGTGTTTTA
1 ATGTG-TTTA
*
84942808 ATATGTTT
1 ATGTGTTT
84942816 GTTAAATGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
9 47 0.73
10 8 0.12
11 9 0.14
ACGTcount: A:0.24, C:0.01, G:0.19, T:0.55
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:84944845 original size:79 final size:81
Alignment explanation
Indices: 84944705--84944887 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
84944695 TCGAATGATG
* * *
84944705 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGGAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
84944769 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
84944784 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
84944846 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
84944864 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84944888 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:84944903 original size:40 final size:40
Alignment explanation
Indices: 84944706--84944889 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
84944696 CGAATGATGT
* * * *
84944706 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
84944746 CCGGACTAAGAT-CCGGAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
84944786 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84944824 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84944865 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
84944890 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:84944911 original size:79 final size:79
Alignment explanation
Indices: 84944762--84944922 Score: 202
Period size: 79 Copynumber: 2.0 Consensus size: 79
84944752 TAAGATCCGG
* **
84944762 AGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 AGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCC
*
84944827 GGGTTAAGTCCCGA
66 GGGTTAAATCCCGA
* * *
84944841 AGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 AGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
*
84944904 TCC-GGTTAAATTCCGA
63 TCCGGGTTAAATCCCGA
84944920 AGG
1 AGG
84944923 TACGTGATTC
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.63
80 24 0.34
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
AGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCC
GGGTTAAATCCCGA
Found at i:84954078 original size:12 final size:12
Alignment explanation
Indices: 84954047--84954081 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
84954037 AAGAAACATT
*
84954047 ATCAGAACTAGA
1 ATCAGAATTAGA
84954059 ATCAGAATTAGA
1 ATCAGAATTAGA
*
84954071 ATTAGAATTAG
1 ATCAGAATTAG
84954082 GTGACAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (12 bp):
ATCAGAATTAGA
Found at i:84954624 original size:27 final size:27
Alignment explanation
Indices: 84954594--84954906 Score: 305
Period size: 27 Copynumber: 12.0 Consensus size: 27
84954584 AGGGTAAAAT
* * *
84954594 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
84954621 GGTAATCCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
84954648 AGTAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
84954674 GGT-ATTTTATCCCTAC-AGGGTATTTTC
1 GGTAATTCTA-CCCTACAAGGGTA-TTTC
* *
84954701 GGTAATTTCTACCCTACATGGGTATTTT
1 GGTAA-TTCTACCCTACAAGGGTATTTC
*
84954729 AGTAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
84954755 GTTATTTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
84954782 GGTAATTCTA-CCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
84954808 AGTAATTCTACCCTACAAGGGTA----
1 GGTAATTCTACCCTACAAGGGTATTTC
*
84954831 --T--TTCTACCCTACAAGGGTACTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
84954854 GGTATTTCTACCCTACAAGGGTATTGTC
1 GGTAATTCTACCCTACAAGGGTATT-TC
* *
84954882 GGTAA-TCTA-CCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
84954907 AATAATTTTG
Statistics
Matches: 240, Mismatches: 30, Indels: 34
0.79 0.10 0.11
Matches are distributed among these distances:
19 18 0.08
21 1 0.00
25 8 0.03
26 80 0.33
27 104 0.43
28 20 0.08
29 9 0.04
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:84954688 original size:53 final size:54
Alignment explanation
Indices: 84954595--84954913 Score: 301
Period size: 53 Copynumber: 6.1 Consensus size: 54
84954585 GGGTAAAATG
* * * *
84954595 GTAATTTTACCCCACAAGGGTATCTCGGTAATCCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* *
84954649 GTAATTCTACCCTAC-AGGGTATTTCGGT-ATTTTATCCCTAC-AGGGTATTTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCCTACAAGGGTA-TTTCA
* **
84954702 GTAATTTCTACCCTACATGGGTATTTTAGTAATTCTACCCTAC-AGGGTATTTC-
1 GTAA-TTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * * * *
84954755 GTTATTTCTACCCTACAGGGGCATTTCGGTAATTCTA-CCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* *
84954809 GTAATTCTACCCTACAAGGGTA------T--TTCTACCCTACAAGGGTACTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * *
84954855 GTATTTCTACCCTACAAGGGTATTGTCGGTAA-TCTA-CCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATT-TCGGTAATTCTACCCTACAAGGGTATTTCA
*
84954908 ATAATT
1 GTAATT
84954914 TTGTAAATCG
Statistics
Matches: 216, Mismatches: 31, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
45 5 0.02
46 34 0.16
47 1 0.00
52 14 0.06
53 100 0.46
54 35 0.16
55 22 0.10
56 5 0.02
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
Found at i:84954837 original size:19 final size:19
Alignment explanation
Indices: 84954813--84954849 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
84954803 ATTTCAGTAA
84954813 TTCTACCCTACAAGGGTAT
1 TTCTACCCTACAAGGGTAT
84954832 TTCTACCCTACAAGGGTA
1 TTCTACCCTACAAGGGTA
84954850 CTTCGGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (19 bp):
TTCTACCCTACAAGGGTAT
Found at i:84954863 original size:46 final size:45
Alignment explanation
Indices: 84954782--84954878 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 45
84954772 GGGGCATTTC
* * * *
84954782 GGTAATTCTACCTATAGGGGTATTTCAGTAATTCTACCCTACAAG
1 GGTATTTCTACCTACAAGGGTACTTCAGTAATTCTACCCTACAAG
* *
84954827 GGTATTTCTACCCTACAAGGGTACTTCGGTATTTCTACCCTACAAG
1 GGTATTTCTA-CCTACAAGGGTACTTCAGTAATTCTACCCTACAAG
84954873 GGTATT
1 GGTATT
84954879 GTCGGTAATC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
45 9 0.20
46 36 0.80
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
GGTATTTCTACCTACAAGGGTACTTCAGTAATTCTACCCTACAAG
Found at i:84954891 original size:99 final size:98
Alignment explanation
Indices: 84954734--84954913 Score: 290
Period size: 99 Copynumber: 1.8 Consensus size: 98
84954724 ATTTTAGTAA
* * *
84954734 TTCTACCCTACAGGGTATTTCGTTATTTCTACCCTACAGGGGCATTTCGGTAATTCTACCTATAG
1 TTCTACCCTACAGGGTACTTCGGTATTTCTACCCTACAAGGGCATTTCGGTAATTCTACCTATAG
*
84954799 GGGTATTTCAGTAATTCTACCCTACAAGGGTAT
66 GGGTATTTCAATAATTCTACCCTACAAGGGTAT
*
84954832 TTCTACCCTACAAGGGTACTTCGGTATTTCTACCCTACAAGGGTATTGTCGGTAA-TCTACCTAT
1 TTCTACCCTAC-AGGGTACTTCGGTATTTCTACCCTACAAGGGCATT-TCGGTAATTCTACCTAT
84954896 AGGGGTATTTCAATAATT
64 AGGGGTATTTCAATAATT
84954914 TTGTAAATCG
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
98 11 0.15
99 57 0.76
100 7 0.09
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (98 bp):
TTCTACCCTACAGGGTACTTCGGTATTTCTACCCTACAAGGGCATTTCGGTAATTCTACCTATAG
GGGTATTTCAATAATTCTACCCTACAAGGGTAT
Found at i:84954902 original size:72 final size:72
Alignment explanation
Indices: 84954757--84954906 Score: 187
Period size: 72 Copynumber: 2.1 Consensus size: 72
84954747 GGTATTTCGT
* * * *
84954757 TATTTCTACCCTACAGGGGCATTTCGGTAATTCTACCTATAGGGGTATTTCAGTAATTCTACCCT
1 TATTTCTACCCTACAAGGGCACTTCGGTAATTCTACCTACAAGGGTATTTCAGTAATTCTACCCT
84954822 ACAAGGG
66 ACAAGGG
* * *
84954829 TATTTCTACCCTACAAGGGTACTTCGGTATTTCTACCCTACAAGGGTATTGTCGGTAA-TCTA-C
1 TATTTCTACCCTACAAGGGCACTTCGGTAATTCTA-CCTACAAGGGTATT-TCAGTAATTCTACC
* *
84954892 CTATAGGGG
64 CTACAAGGG
84954901 TATTTC
1 TATTTC
84954907 AATAATTTTG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
72 45 0.67
73 16 0.24
74 6 0.09
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (72 bp):
TATTTCTACCCTACAAGGGCACTTCGGTAATTCTACCTACAAGGGTATTTCAGTAATTCTACCCT
ACAAGGG
Found at i:84954995 original size:27 final size:27
Alignment explanation
Indices: 84954965--84955023 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
84954955 GTACTTTTGG
84954965 TAATTTTACAAGTCGA-GGTAATTTCAA
1 TAATTTTACAAGTCGAGGGT-ATTTCAA
*
84954992 TAATTTTACAAGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
84955019 TAATT
1 TAATT
84955024 CACAAATTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:84955054 original size:53 final size:52
Alignment explanation
Indices: 84954992--84955263 Score: 239
Period size: 53 Copynumber: 5.1 Consensus size: 52
84954982 GTAATTTCAA
* * **
84954992 TAATTTTACAAGTCGAGGGTATTTCAGTAA-TTCACAAATTAGGGGTATTTTGG
1 TAATTTTACAA--CTAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGG
* **
84955045 TAATTTTACAACTAGGATATTTTTG-AATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAACTAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGG
*
84955096 TAATTTTACAAACTAGGGGTATTTGA-TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTAC-AACTA-GGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGG
* ** * *
84955149 TAATTTTACAACCAAGGGTATTTTGGTGATTTTTATAAAACCAGGGGTATTCTT-G
1 TAATTTTACAA-CTAGGGTATTTCAGT-AATTTTA-CAAACCAGGGGTATT-TTGG
* * * ** *
84955204 TAATTTTATAAACCAAGGGTA-TTCTTGTAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTTA-CAA-CTAGGGTATTTC-AGTAATTTTACAAACCAGGGGTATTTTGG
84955258 TAATTT
1 TAATTT
84955264 CGTAAACTAA
Statistics
Matches: 185, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
50 2 0.01
51 39 0.21
52 15 0.08
53 58 0.31
54 26 0.14
55 30 0.16
56 15 0.08
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (52 bp):
TAATTTTACAACTAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGG
Found at i:84955078 original size:104 final size:104
Alignment explanation
Indices: 84954966--84955263 Score: 235
Period size: 104 Copynumber: 2.8 Consensus size: 104
84954956 TACTTTTGGT
** *
84954966 AATTTTACAAGTC-GAGGTAATTTCAATAATTTTACAAGTCGA-GGGTATTTCAGTAA-TTCACA
1 AATTTTACAAACCAGAGGT-ATTTCAATAATTTTACAA-ACGAGGGGTATTTCA-TAATTTCACA
**
84955028 AATTAGGGGTATTTTGGTAATTTTACAACTAGGATATTTTTG
63 AACCAGGGGTATTTTGGTAATTTTACAACTAGGATATTTTTG
* *** * * *
84955070 AATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTGATAATTTTACAAAC
1 AATTTTACAAACCAGAGGTATTTCAATAATTTTACAAACGAGGGGTATTTCATAATTTCACAAAC
* *
84955135 CAGGGGTATTTTGGTAATTTTACAACCAAGGGTATTTTGGTG
66 CAGGGGTATTTTGGTAATTTTACAA-CTAGGATATTTT--TG
* * * ** * * * ** ***
84955177 ATTTTTATAAAACCAGGGGTA-TTCTTGTAATTTTATAAACCAAGGGTATTCTTGTAATTTTGTA
1 AATTTTA-CAAACCAGAGGTATTTC-AATAATTTTACAAACGAGGGGTATT-TCATAATTTCACA
*
84955241 AACCAAGGGTATTTTGGTAATTT
63 AACCAGGGGTATTTTGGTAATTT
84955264 CGTAAACTAA
Statistics
Matches: 159, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
103 5 0.03
104 66 0.42
105 14 0.09
107 10 0.06
108 33 0.21
109 31 0.19
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (104 bp):
AATTTTACAAACCAGAGGTATTTCAATAATTTTACAAACGAGGGGTATTTCATAATTTCACAAAC
CAGGGGTATTTTGGTAATTTTACAACTAGGATATTTTTG
Found at i:84955103 original size:27 final size:27
Alignment explanation
Indices: 84955032--84955263 Score: 262
Period size: 27 Copynumber: 8.7 Consensus size: 27
84955022 TTCACAAATT
*
84955032 AGGGGTATTTTGGTAATTTTAC-AACT
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
84955058 A-GGATATTTTTG-AATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
84955083 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
*
84955110 AGGGGTA-TTTGATAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
84955136 AGGGGTATTTTGGTAATTTTAC-AACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * *
84955162 AAGGGTATTTTGGTGATTTTTATAAAACC
1 AGGGGTATTTTGGT-AATTTTA-CAAACC
*
84955191 AGGGGTATTCTT-GTAATTTTATAAACC
1 AGGGGTATT-TTGGTAATTTTACAAACC
* **
84955218 AAGGGTATTCTT-GTAATTTTGTAAACC
1 AGGGGTATT-TTGGTAATTTTACAAACC
*
84955245 AAGGGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTT
84955264 CGTAAACTAA
Statistics
Matches: 180, Mismatches: 17, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.04
25 13 0.07
26 53 0.29
27 84 0.47
28 6 0.03
29 14 0.08
30 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:84956706 original size:19 final size:19
Alignment explanation
Indices: 84956682--84956734 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
84956672 GAATCAGAAT
* * *
84956682 CAGAATTAGAATTAGGTGA
1 CAGAATCAGAATCAGGTAA
*
84956701 CAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGGTAA
*
84956720 CAGAATCAAAATCAG
1 CAGAATCAGAATCAG
84956735 AATGTGAATG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:84956919 original size:27 final size:26
Alignment explanation
Indices: 84956856--84956973 Score: 148
Period size: 27 Copynumber: 4.5 Consensus size: 26
84956846 AGCATGGCTG
* *
84956856 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
84956882 CCAG-ACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
*
84956908 CGAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
84956935 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
*
84956962 CCAGGACAGATA
1 CCAGAACAGATA
84956974 TATATATGTG
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
25 9 0.11
26 18 0.22
27 51 0.64
28 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:84956937 original size:53 final size:54
Alignment explanation
Indices: 84956856--84956976 Score: 174
Period size: 54 Copynumber: 2.3 Consensus size: 54
84956846 AGCATGGCTG
*
84956856 CCAGAACAGATA-ATGTGACAGAGTCACCAGA-CAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* * * *
84956908 CGAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
*
84956962 CCAGGACAGATATAT
1 CCAGAACAGATATAT
84956977 ATATGTGGCG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
52 11 0.18
53 17 0.28
54 32 0.53
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:84956992 original size:31 final size:30
Alignment explanation
Indices: 84956868--84956996 Score: 93
Period size: 27 Copynumber: 4.6 Consensus size: 30
84956858 AGAACAGATA
* *
84956868 ATGTGACAGAGTCACCA-GA-CAGATA-AT
1 ATGTGGCAGAGCCACCAGGATCAGATATAT
* * *
84956895 -CGTGGCAGAGCCACGA-GAACAG--ATAT
1 ATGTGGCAGAGCCACCAGGATCAGATATAT
84956921 ATGTGGCAGAGCCACCA-GATCAGATA-AT
1 ATGTGGCAGAGCCACCAGGATCAGATATAT
*
84956949 -TGTGGCATAGCCACCAGGA-CAGATATATAT
1 ATGTGGCAGAGCCACCAGGATCAG--ATATAT
84956979 ATGTGGC-GAAGCCACCAG
1 ATGTGGCAG-AGCCACCAG
84956997 ATTGTAGCGA
Statistics
Matches: 82, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
25 1 0.01
26 16 0.20
27 40 0.49
28 4 0.05
29 4 0.05
30 2 0.02
31 15 0.18
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (30 bp):
ATGTGGCAGAGCCACCAGGATCAGATATAT
Found at i:84957540 original size:27 final size:27
Alignment explanation
Indices: 84957241--84957533 Score: 371
Period size: 27 Copynumber: 11.0 Consensus size: 27
84957231 GGGGTAAAAT
* *
84957241 GGTAATTTTACCCATA-A-GGGTATCTC
1 GGTAATTCTACCC-TACAGGGGTATTTC
* *
84957267 GATAATCCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84957294 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
84957321 GGTATTTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84957348 GGTAATTCTACCCTACATGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84957375 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84957402 GGTATTTCTA-CCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84957428 GGTAACTCTA-CCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84957454 AGTAATTCTA-CCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
84957480 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
84957507 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
84957534 AATAATTTTG
Statistics
Matches: 232, Mismatches: 32, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
25 2 0.01
26 79 0.34
27 151 0.65
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:84957554 original size:27 final size:27
Alignment explanation
Indices: 84957524--84957825 Score: 118
Period size: 27 Copynumber: 11.3 Consensus size: 27
84957514 CTACCCTACA
* *
84957524 AGGGTATTTCAATAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTATAAATCG
** * *
84957551 AGGGTATAACGGTAA-TTTATAAATCA
1 AGGGTATTTCAGTAATTTTATAAATCG
* * * *
84957577 ATGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCAGTAATTTTATAAATCG
* * *
84957604 AGGGTATTTCAATAATTTTACAAGTCG
1 AGGGTATTTCAGTAATTTTATAAATCG
* *
84957631 AGGGTATTTTAGTAATTTCATAAATC-
1 AGGGTATTTCAGTAATTTTATAAATCG
** * *
84957657 AGGGGTATTTTGGTAATTTTACAAAT-T
1 A-GGGTATTTCAGTAATTTTATAAATCG
* * *
84957684 AGGGGTATTT-TGATAATTTTACAAA-CC
1 A-GGGTATTTCAG-TAATTTTATAAATCG
** * * *
84957711 AGGGGTATTTTGGTAATTTTACAAACCA
1 A-GGGTATTTCAGTAATTTTATAAATCG
** * * * *
84957739 AGGGTATTTTGGTGATTTTACAAACCA
1 AGGGTATTTCAGTAATTTTATAAATCG
* * *
84957766 AGGGTATTT-GGTAA-TTTACAAA-CC
1 AGGGTATTTCAGTAATTTTATAAATCG
** * * *
84957790 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTATTTCAGTAATTTTATAAATCG
84957818 AGGGTATT
1 AGGGTATT
84957826 CTTGTAATTT
Statistics
Matches: 229, Mismatches: 33, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
24 2 0.01
25 16 0.07
26 32 0.14
27 174 0.76
28 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTATAAATCG
Found at i:84957591 original size:80 final size:80
Alignment explanation
Indices: 84957495--84957774 Score: 208
Period size: 81 Copynumber: 3.5 Consensus size: 80
84957485 TTCTACCCTA
* **
84957495 CAAGGGTATTTCGGTAATTCTAC-CCTACAAGGGTATTTCAATAATTTTGTAAATCGAGGGTATA
1 CAAGGGTATTT-GGTAATTCTACAACT-CAAGGGTATTTCAATAATTTTACAAATCGAGGGTATA
*
84957559 ACGGTAATTT-ATAAAT
64 ACAGTAATTTCATAAAT
* * * * * **
84957575 CAATGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAAGTCGAGGGTATTT
1 CAAGGGTA-TTTGGTAATTCTACAACTCAAGGGTATTTCAATAATTTTACAAATCGAGGGTATAA
*
84957640 TAGTAATTTCATAAAT
65 CAGTAATTTCATAAAT
* * * * * ** * *
84957656 CAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGATAATTTTACAAA-CCAGGGGTATT
1 CAAGGGTA-TTTGGTAATTCTACAACTCAAGGGTATTTCAATAATTTTACAAATCGA-GGGTATA
*** * * *
84957720 TTGGTAATTTTACAAAC
64 ACAGTAATTTCATAAAT
* *
84957737 CAAGGGTATTTTGGTGATTTTACAAAC-CAAGGGTATTT
1 CAAGGGTA-TTTGGTAATTCTAC-AACTCAAGGGTATTT
84957775 GGTAATTTAC
Statistics
Matches: 163, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
80 58 0.36
81 103 0.63
82 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (80 bp):
CAAGGGTATTTGGTAATTCTACAACTCAAGGGTATTTCAATAATTTTACAAATCGAGGGTATAAC
AGTAATTTCATAAAT
Found at i:84957835 original size:27 final size:27
Alignment explanation
Indices: 84957561--84957888 Score: 342
Period size: 27 Copynumber: 12.3 Consensus size: 27
84957551 AGGGTATAAC
* * * *
84957561 GGTAA-TTTATAAATCAATGGTACTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
** * *
84957587 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTT
** ** *
84957614 AATAATTTTACAAGTCGAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* * * * *
84957641 AGTAATTTCATAAATCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
** *
84957668 GGTAATTTTACAAATTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
84957695 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
84957722 GGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
84957749 GGTGATTTTACAAACCAAGGGTA-TTT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
84957775 GGTAA-TTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
84957801 GGTGATTTTATAAACCAAGGGTATTCTT
1 GGTAATTTTACAAACCAAGGGTATT-TT
*
84957829 -GTAATTTTAC-AACCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
**
84957854 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
84957881 GGTAATTT
1 GGTAATTT
84957889 CGTAAACTAA
Statistics
Matches: 260, Mismatches: 36, Indels: 11
0.85 0.12 0.04
Matches are distributed among these distances:
25 18 0.07
26 39 0.15
27 201 0.77
28 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAACCAAGGGTATTTT
Found at i:84959081 original size:23 final size:23
Alignment explanation
Indices: 84959055--84959099 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
84959045 TAGACCTGGA
*
84959055 TTAT-TTTTATTTTTTTCTTTTAG
1 TTATATTTT-TTTATTTCTTTTAG
*
84959078 TTATATTTTTTTATTTGTTTTA
1 TTATATTTTTTTATTTCTTTTA
84959100 ATTAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (23 bp):
TTATATTTTTTTATTTCTTTTAG
Found at i:84959342 original size:69 final size:69
Alignment explanation
Indices: 84959229--84959373 Score: 254
Period size: 69 Copynumber: 2.1 Consensus size: 69
84959219 ATAAATAGGG
* * *
84959229 TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGATAATGTGCTATATAAAGTGTGAGGGT
1 TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGACAATGTGCTAAATAAAATGTGAGGGT
84959294 GATA
66 GATA
84959298 TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGACAATGTGCTAAATAAAATGTGAGGGT
1 TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGACAATGTGCTAAATAAAATGTGAGGGT
84959363 GATA
66 GATA
84959367 TAGATTT
1 TA-ATTT
84959374 TTTAATTTTT
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
69 68 0.94
70 4 0.06
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (69 bp):
TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGACAATGTGCTAAATAAAATGTGAGGGT
GATA
Found at i:84959470 original size:20 final size:21
Alignment explanation
Indices: 84959427--84959469 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
84959417 ATTTTTAGAG
84959427 TTAAATTTATTTTTTTGTGTT
1 TTAAATTTATTTTTTTGTGTT
84959448 TTAAATTTATTTTTTTGTGTT
1 TTAAATTTATTTTTTTGTGTT
84959469 T
1 T
84959470 ACAAGTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (21 bp):
TTAAATTTATTTTTTTGTGTT
Found at i:84963126 original size:16 final size:17
Alignment explanation
Indices: 84963093--84963129 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
84963083 TTCCAAATCA
84963093 AAAG-GAAGAATAGAGG
1 AAAGAGAAGAATAGAGG
*
84963109 AAAGAGAAGAAT-GGGG
1 AAAGAGAAGAATAGAGG
84963125 AAAGA
1 AAAGA
84963130 ACAATCACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.57, C:0.00, G:0.38, T:0.05
Consensus pattern (17 bp):
AAAGAGAAGAATAGAGG
Found at i:84967952 original size:43 final size:43
Alignment explanation
Indices: 84967773--84967936 Score: 249
Period size: 43 Copynumber: 3.8 Consensus size: 43
84967763 TTTATTGGAA
*
84967773 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGT-GGG
* * *
84967817 AAAA-CGCCGCTGAAGGTCAAGGCTTTTAGTGGCGTTTATGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
* *
84967859 AAAAGTGCCGCGAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
84967902 AAAAGCGCCGCTAAATGTCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
84967937 CTTTTTCTAC
Statistics
Matches: 108, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
42 7 0.06
43 97 0.90
44 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.34, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:84973977 original size:9 final size:9
Alignment explanation
Indices: 84973963--84974079 Score: 99
Period size: 9 Copynumber: 12.3 Consensus size: 9
84973953 ATGTATTAGT
84973963 TAAGTTATG
1 TAAGTTATG
84973972 TAAGTTGTTATG
1 TAA---GTTATG
*
84973984 TACGTTATG
1 TAAGTTATG
* *
84973993 TGAGATATG
1 TAAGTTATG
*
84974002 TAAATTATG
1 TAAGTTATG
*
84974011 TATGTTATG
1 TAAGTTATG
*
84974020 TGAGTTATG
1 TAAGTTATG
84974029 TAAGTTGTTATG
1 TAA---GTTATG
*
84974041 TAAATTATG
1 TAAGTTATG
*
84974050 TAAGTTATA
1 TAAGTTATG
*
84974059 TGAGTTATG
1 TAAGTTATG
84974068 TAAGTTATG
1 TAAGTTATG
84974077 TAA
1 TAA
84974080 TTTCTTTAAG
Statistics
Matches: 84, Mismatches: 18, Indels: 12
0.74 0.16 0.11
Matches are distributed among these distances:
9 67 0.80
12 17 0.20
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:84974041 original size:39 final size:39
Alignment explanation
Indices: 84973998--84974073 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
84973988 TTATGTGAGA
* *
84973998 TATGTAAATTATGTATGTTATGTGAGTTATGTAAGTTGT
1 TATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTGT
84974037 TATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
1 TATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
84974074 ATGTAATTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (39 bp):
TATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTGT
Found at i:84974049 original size:57 final size:57
Alignment explanation
Indices: 84973965--84974077 Score: 154
Period size: 57 Copynumber: 2.0 Consensus size: 57
84973955 GTATTAGTTA
** * * *
84973965 AGTTATGTAAGTTGTTATGTACGTTATGTGAGATATGTAAATTATGTATGTTATGTG
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGATATATAAATTATGTAAGTTATGTG
* * *
84974022 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGT
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGATATATAAATTATGTAAGTTATGT
84974078 AATTTCTTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.46
Consensus pattern (57 bp):
AGTTATGTAAGTTGTTATGTAAATTATGTAAGATATATAAATTATGTAAGTTATGTG
Found at i:84974527 original size:241 final size:242
Alignment explanation
Indices: 84974104--84974967 Score: 1676
Period size: 242 Copynumber: 3.6 Consensus size: 242
84974094 GATCAATATC
84974104 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
1 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
84974169 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
66 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
84974234 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
131 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
84974299 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAA-TTTTTTCA
196 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
84974345 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
1 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
*
84974410 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAACCTATATACTTTGAATCTTTAAAAT
66 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
84974475 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
131 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
84974540 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
196 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
*
84974587 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAAGGAGGATCCATTAT
1 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
* *
84974652 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGTCTATATACTTTGAATCTTTAAAAC
66 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
84974717 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
131 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
84974782 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
196 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
*
84974829 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGAGAGGATCCATTAT
1 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
84974894 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
66 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
84974959 ATTTAAAAT
131 ATTTAAAAT
84974968 CTAATGGAGC
Statistics
Matches: 613, Mismatches: 9, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
241 232 0.38
242 381 0.62
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (242 bp):
AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
Found at i:84978125 original size:12 final size:13
Alignment explanation
Indices: 84978108--84978139 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
84978098 TAGGGTTAGG
84978108 GGGGAAA-TTTTA
1 GGGGAAAGTTTTA
84978120 GGGGAAAGTTTTA
1 GGGGAAAGTTTTA
84978133 GGGGAAA
1 GGGGAAA
84978140 AACACTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.34, C:0.00, G:0.41, T:0.25
Consensus pattern (13 bp):
GGGGAAAGTTTTA
Found at i:84978606 original size:16 final size:18
Alignment explanation
Indices: 84978575--84978608 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
84978565 TTGATTTATT
84978575 TAATATATAATATAAAAA
1 TAATATATAATATAAAAA
84978593 TAATATA-AAT-TAAAAA
1 TAATATATAATATAAAAA
84978609 ACAATCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 3 0.19
18 7 0.44
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TAATATATAATATAAAAA
Done.